Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007746.t1 | XP_003606328.2 | 98.5 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 2.20E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007746.t1 | O65198 | 99.5 | 202 | 1 | 0 | 5 | 206 | 1 | 202 | 2.9e-108 | 392.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007746.t1 | B7FHQ5 | 98.5 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 1.6e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011492 | MS.gene007746 | PPI |
| MS.gene71901 | MS.gene007746 | PPI |
| MS.gene62862 | MS.gene007746 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007746.t1 | MTR_4g057240 | 98.544 | 206 | 3 | 0 | 1 | 206 | 1 | 206 | 3.04e-147 | 407 |
| MS.gene007746.t1 | MTR_7g114240 | 68.919 | 148 | 46 | 0 | 56 | 203 | 3 | 150 | 6.10e-71 | 213 |
| MS.gene007746.t1 | MTR_6g029200 | 60.403 | 149 | 58 | 1 | 56 | 203 | 9 | 157 | 1.26e-57 | 179 |
| MS.gene007746.t1 | MTR_6g029200 | 61.111 | 144 | 53 | 1 | 63 | 203 | 4 | 147 | 3.29e-56 | 175 |
| MS.gene007746.t1 | MTR_7g114240 | 63.366 | 101 | 37 | 0 | 56 | 156 | 3 | 103 | 1.27e-41 | 137 |
| MS.gene007746.t1 | MTR_4g101820 | 35.537 | 121 | 67 | 4 | 57 | 176 | 157 | 267 | 2.54e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007746.t1 | AT2G28190 | 72.986 | 211 | 48 | 2 | 3 | 206 | 8 | 216 | 1.65e-102 | 295 |
| MS.gene007746.t1 | AT1G08830 | 66.892 | 148 | 49 | 0 | 56 | 203 | 3 | 150 | 3.20e-67 | 203 |
| MS.gene007746.t1 | AT1G08830 | 66.892 | 148 | 49 | 0 | 56 | 203 | 3 | 150 | 3.20e-67 | 203 |
| MS.gene007746.t1 | AT5G18100 | 60.135 | 148 | 59 | 0 | 56 | 203 | 9 | 156 | 4.63e-61 | 188 |
| MS.gene007746.t1 | AT5G18100 | 58.730 | 126 | 52 | 0 | 56 | 181 | 9 | 134 | 1.49e-48 | 155 |
| MS.gene007746.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 28 | 139 | 1.74e-14 | 68.9 |
| MS.gene007746.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 164 | 275 | 4.71e-14 | 69.7 |
| MS.gene007746.t1 | AT1G12520 | 37.190 | 121 | 67 | 3 | 57 | 177 | 73 | 184 | 5.30e-14 | 68.6 |
Find 68 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTGCAACAGCTTTCT+TGG | 0.257195 | 4.4:-46096464 | None:intergenic |
| GGCCTTACTCCAGGGCTTCA+TGG | 0.278416 | 4.4:+46097315 | MS.gene007746:CDS |
| AACGGAGAGAGGCTGGAATT+TGG | 0.292602 | 4.4:-46096431 | None:intergenic |
| GGCTCTCCCAATGACTGAAT+TGG | 0.294518 | 4.4:-46097994 | None:intergenic |
| GAAAGCTGTTGCAGTTCTTA+AGG | 0.327591 | 4.4:+46096468 | MS.gene007746:CDS |
| GCTCTCCCAATGACTGAATT+GGG | 0.359785 | 4.4:-46097993 | None:intergenic |
| GCATGACGGATTTCATCTTC+AGG | 0.389426 | 4.4:-46097634 | None:intergenic |
| TTTATCTTGCAGCACGAGTA+TGG | 0.392047 | 4.4:+46097434 | MS.gene007746:intron |
| AAAGCTGTTGCAGTTCTTAA+GGG | 0.393106 | 4.4:+46096469 | MS.gene007746:CDS |
| AGCGTTTGTAGCATTTATAC+TGG | 0.397586 | 4.4:-46099670 | None:intergenic |
| GGCAACAATCGTTGACAATC+AGG | 0.399165 | 4.4:+46097791 | MS.gene007746:CDS |
| CGTATCACTGGCCTTACTCC+AGG | 0.406214 | 4.4:+46097306 | MS.gene007746:CDS |
| GAGTGAGAAGTGAGTGGCGA+AGG | 0.415982 | 4.4:-46096340 | None:intergenic |
| ACTGGCCCCAATTCAGTCAT+TGG | 0.417542 | 4.4:+46097987 | MS.gene007746:CDS |
| CAGGAGCACCGTGTGTCAAC+TGG | 0.432832 | 4.4:-46097615 | None:intergenic |
| AATCCGTCATGCGGGTGACC+TGG | 0.434387 | 4.4:+46097645 | MS.gene007746:CDS |
| AACCATGAAGCCCTGGAGTA+AGG | 0.443025 | 4.4:-46097317 | None:intergenic |
| CAGCAACAACGGAGAGAGGC+TGG | 0.455953 | 4.4:-46096438 | None:intergenic |
| GCACCGTGTGTCAACTGGTT+AGG | 0.459986 | 4.4:-46097610 | None:intergenic |
| AGTCATTGGGAGAGCCTTAG+TGG | 0.466496 | 4.4:+46098001 | MS.gene007746:CDS |
| AAGGGTAACTCCACTGTTGA+AGG | 0.471786 | 4.4:+46096487 | MS.gene007746:CDS |
| CTGGCCCCAATTCAGTCATT+GGG | 0.477587 | 4.4:+46097988 | MS.gene007746:CDS |
| TTGATTGTTTCAGGTGTGGT+TGG | 0.496252 | 4.4:+46099640 | MS.gene007746:intron |
| CTTGAAGATGACCTTGGAAA+GGG | 0.496504 | 4.4:+46098032 | MS.gene007746:CDS |
| CATCAGCAATTATGTTTCCC+AGG | 0.498669 | 4.4:-46097663 | None:intergenic |
| ACAGTCAATGTTCGTATCAC+TGG | 0.500510 | 4.4:+46097294 | MS.gene007746:CDS |
| ATACGAACATTGACTGTTGT+TGG | 0.508293 | 4.4:-46097288 | None:intergenic |
| CTGGAATTTGGAACGCGAAA+GGG | 0.512711 | 4.4:-46096419 | None:intergenic |
| CTTCTCCGATCATCTTTCTC+CGG | 0.517355 | 4.4:+46096364 | MS.gene007746:CDS |
| GAGAGTGTGACGCCATTGTT+AGG | 0.519424 | 4.4:-46096309 | None:intergenic |
| ATCCGTCATGCGGGTGACCT+GGG | 0.530041 | 4.4:+46097646 | MS.gene007746:CDS |
| CGCGAAAGGGTTGAGAATTG+AGG | 0.534704 | 4.4:-46096406 | None:intergenic |
| AGTTTGAGCACTGGAAATGC+CGG | 0.542289 | 4.4:+46098354 | MS.gene007746:CDS |
| CATGAACTTAGTTTGAGCAC+TGG | 0.549851 | 4.4:+46098345 | MS.gene007746:CDS |
| GTATCACTGGCCTTACTCCA+GGG | 0.550072 | 4.4:+46097307 | MS.gene007746:CDS |
| AGGTGAAAACCATGAAGCCC+TGG | 0.553380 | 4.4:-46097324 | None:intergenic |
| ACCAATGGGTGTATCTCGAC+AGG | 0.554865 | 4.4:+46097464 | MS.gene007746:CDS |
| TTCAAGCTCATGAACCACTA+AGG | 0.558296 | 4.4:-46098015 | None:intergenic |
| CATGAGCTTGAAGATGACCT+TGG | 0.559793 | 4.4:+46098026 | MS.gene007746:CDS |
| GAAGATGAAATCCGTCATGC+GGG | 0.564092 | 4.4:+46097637 | MS.gene007746:CDS |
| GCTGGAATTTGGAACGCGAA+AGG | 0.574919 | 4.4:-46096420 | None:intergenic |
| ACCTGTCGAGATACACCCAT+TGG | 0.575585 | 4.4:-46097465 | None:intergenic |
| AGAGAGCTTGACGGAGACGC+CGG | 0.577978 | 4.4:-46096383 | None:intergenic |
| AGTAACAACACCTTCAACAG+TGG | 0.579962 | 4.4:-46096497 | None:intergenic |
| GCTTGAAGATGACCTTGGAA+AGG | 0.581249 | 4.4:+46098031 | MS.gene007746:CDS |
| GAATTGAGGAGAGAGCTTGA+CGG | 0.581862 | 4.4:-46096392 | None:intergenic |
| AACATAATTGCTGATGCCAA+CGG | 0.589398 | 4.4:+46097670 | MS.gene007746:CDS |
| GGATGAACTAACCCTTTCCA+AGG | 0.593520 | 4.4:-46098043 | None:intergenic |
| GAGTATGGTGATACCACCAA+TGG | 0.595372 | 4.4:+46097449 | MS.gene007746:CDS |
| AGTATGGTGATACCACCAAT+GGG | 0.608769 | 4.4:+46097450 | MS.gene007746:CDS |
| GTGAAACACAGGCGTTGCAG+AGG | 0.609173 | 4.4:+46097770 | MS.gene007746:intron |
| TTTCTTGGCAGCAGCAACAA+CGG | 0.616837 | 4.4:-46096449 | None:intergenic |
| GCAGCAGCAACAACGGAGAG+AGG | 0.618791 | 4.4:-46096442 | None:intergenic |
| TGTCGAGATACACCCATTGG+TGG | 0.618804 | 4.4:-46097462 | None:intergenic |
| CTCTCCCAATGACTGAATTG+GGG | 0.619637 | 4.4:-46097992 | None:intergenic |
| ACCACAGGCTAATCTTCCAC+CGG | 0.621370 | 4.4:-46098373 | None:intergenic |
| AATCTTCATGCACCTAACAA+TGG | 0.624185 | 4.4:+46096297 | None:intergenic |
| AATCCTAACCAGTTGACACA+CGG | 0.627360 | 4.4:+46097607 | MS.gene007746:CDS |
| TTCCCAGGTCACCCGCATGA+CGG | 0.629118 | 4.4:-46097648 | None:intergenic |
| TGAAGATGAAATCCGTCATG+CGG | 0.631482 | 4.4:+46097636 | MS.gene007746:CDS |
| ATCATGCAGATACCACTCAC+TGG | 0.633823 | 4.4:+46097969 | MS.gene007746:intron |
| AGACGCCGGAGAAAGATGAT+CGG | 0.638557 | 4.4:-46096369 | None:intergenic |
| TTGAGCACTGGAAATGCCGG+TGG | 0.645778 | 4.4:+46098357 | MS.gene007746:CDS |
| AGAAGAGAGTGAGAAGTGAG+TGG | 0.648773 | 4.4:-46096346 | None:intergenic |
| ACTGAATTGGGGCCAGTGAG+TGG | 0.664251 | 4.4:-46097981 | None:intergenic |
| GCCGGTGGAAGATTAGCCTG+TGG | 0.696428 | 4.4:+46098372 | MS.gene007746:CDS |
| ACTCTTACTCAAGAAAACGA+AGG | 0.698943 | 4.4:+46096517 | MS.gene007746:CDS |
| AACTGGTTAGGATTGAAATG+TGG | 0.750548 | 4.4:-46097598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAATATATAAAA+TGG | - | chr4.4:46098067-46098086 | None:intergenic | 0.0% |
| !! | CAATAACATAATATTAATCT+AGG | + | chr4.4:46098776-46098795 | MS.gene007746:intron | 15.0% |
| !! | TCGATATCTTTAAATTAAAA+GGG | + | chr4.4:46098906-46098925 | MS.gene007746:intron | 15.0% |
| !!! | AAATATAAAGGTACAAAAAA+TGG | - | chr4.4:46097512-46097531 | None:intergenic | 15.0% |
| !!! | AACTAAATAAACAATTTTGA+AGG | - | chr4.4:46097374-46097393 | None:intergenic | 15.0% |
| !!! | ACTGTTTTAATATAATCTAT+AGG | + | chr4.4:46096823-46096842 | MS.gene007746:intron | 15.0% |
| !!! | TTATTTTCCTCTAAAAAATA+TGG | + | chr4.4:46097408-46097427 | MS.gene007746:intron | 15.0% |
| !! | AACATATAAGCATTTAAGTA+TGG | - | chr4.4:46098454-46098473 | None:intergenic | 20.0% |
| !! | AATAATTGAAGATCATGAAA+AGG | - | chr4.4:46098431-46098450 | None:intergenic | 20.0% |
| !! | AATGCATTATGAATCTTTAT+AGG | + | chr4.4:46096660-46096679 | MS.gene007746:intron | 20.0% |
| !! | AGGTTATTATTATACAGTAA+GGG | - | chr4.4:46099231-46099250 | None:intergenic | 20.0% |
| !! | ATCAATTATCGATAATAGTT+TGG | + | chr4.4:46096581-46096600 | MS.gene007746:intron | 20.0% |
| !! | ATCCAATAATCTTATGAAAA+CGG | - | chr4.4:46096918-46096937 | None:intergenic | 20.0% |
| !! | CCATTATCTATTGTTTATTT+GGG | - | chr4.4:46098149-46098168 | None:intergenic | 20.0% |
| !! | CTCGATATCTTTAAATTAAA+AGG | + | chr4.4:46098905-46098924 | MS.gene007746:intron | 20.0% |
| !! | GATTATGAGTAATTGAAATT+TGG | + | chr4.4:46096625-46096644 | MS.gene007746:intron | 20.0% |
| !!! | ACATAATATTTGGTGTTAAA+AGG | + | chr4.4:46099084-46099103 | MS.gene007746:intron | 20.0% |
| !!! | ATATATGCTTTTTAGAATTG+TGG | + | chr4.4:46098753-46098772 | MS.gene007746:intron | 20.0% |
| !!! | TAAAACACCATATTTTTTAG+AGG | - | chr4.4:46097418-46097437 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTATAGGTTTT+GGG | + | chr4.4:46096667-46096686 | MS.gene007746:intron | 20.0% |
| !!! | TTATCATCTCATTTTAAAGT+TGG | + | chr4.4:46099144-46099163 | MS.gene007746:intron | 20.0% |
| !!! | TTATGAATCTTTATAGGTTT+TGG | + | chr4.4:46096666-46096685 | MS.gene007746:intron | 20.0% |
| ! | AAAAAATGGAAACTAAGGTT+AGG | - | chr4.4:46097498-46097517 | None:intergenic | 25.0% |
| ! | ACCATAGGAACAAAATATAA+AGG | - | chr4.4:46097524-46097543 | None:intergenic | 25.0% |
| ! | AGCATGTTAATTTAGATAAG+GGG | + | chr4.4:46099434-46099453 | MS.gene007746:intron | 25.0% |
| ! | AGTCCAATTCTTAAAAGTTA+TGG | + | chr4.4:46099520-46099539 | MS.gene007746:intron | 25.0% |
| ! | ATAAATGTAATCCCTATACT+CGG | - | chr4.4:46099019-46099038 | None:intergenic | 25.0% |
| ! | ATATGAACTTGTCTTGATTT+GGG | + | chr4.4:46096708-46096727 | MS.gene007746:intron | 25.0% |
| ! | ATGTCTCGAAACATAATATT+TGG | + | chr4.4:46099074-46099093 | MS.gene007746:intron | 25.0% |
| ! | ATTGTTTATTTGGGTAATAC+AGG | - | chr4.4:46098140-46098159 | None:intergenic | 25.0% |
| ! | CAAGTATTAATTAGTGACAT+AGG | - | chr4.4:46099301-46099320 | None:intergenic | 25.0% |
| ! | CAGGTTATTATTATACAGTA+AGG | - | chr4.4:46099232-46099251 | None:intergenic | 25.0% |
| ! | CCCAAATAAACAATAGATAA+TGG | + | chr4.4:46098146-46098165 | MS.gene007746:intron | 25.0% |
| ! | GAATGACATGAATATGAAAT+TGG | + | chr4.4:46098187-46098206 | MS.gene007746:intron | 25.0% |
| ! | GAGCATGTTAATTTAGATAA+GGG | + | chr4.4:46099433-46099452 | MS.gene007746:intron | 25.0% |
| ! | GCCATTATCTATTGTTTATT+TGG | - | chr4.4:46098150-46098169 | None:intergenic | 25.0% |
| ! | TAACATTTAGCAACATATAC+AGG | - | chr4.4:46098676-46098695 | None:intergenic | 25.0% |
| ! | TAAGAATTGGACTATTGAAT+AGG | - | chr4.4:46099513-46099532 | None:intergenic | 25.0% |
| ! | TGAGCATGTTAATTTAGATA+AGG | + | chr4.4:46099432-46099451 | MS.gene007746:intron | 25.0% |
| ! | TGTATATGTTGCTAAATGTT+AGG | + | chr4.4:46098675-46098694 | MS.gene007746:intron | 25.0% |
| ! | TTTAAGTCTTTGAATAAGCT+TGG | + | chr4.4:46098584-46098603 | MS.gene007746:intron | 25.0% |
| !! | ACCTTTATATTTTGTTCCTA+TGG | + | chr4.4:46097520-46097539 | MS.gene007746:intron | 25.0% |
| !! | TAATTAAGAAGAGCATGTTT+AGG | - | chr4.4:46097165-46097184 | None:intergenic | 25.0% |
| !! | TATATTTTGTTCCTATGGTT+TGG | + | chr4.4:46097525-46097544 | MS.gene007746:intron | 25.0% |
| !!! | AGATACTTCCTAGTTTTAAT+TGG | - | chr4.4:46098807-46098826 | None:intergenic | 25.0% |
| !!! | AGGATATTGTTTTTAAAAGC+AGG | - | chr4.4:46099251-46099270 | None:intergenic | 25.0% |
| !!! | ATAAACAATTTTGAAGGAAG+AGG | - | chr4.4:46097368-46097387 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTAAAGTTGGAT+TGG | + | chr4.4:46099149-46099168 | MS.gene007746:intron | 25.0% |
| !!! | CGATAATAGTTTGGTTTTTT+TGG | + | chr4.4:46096590-46096609 | MS.gene007746:intron | 25.0% |
| !!! | TAACTGCAGTATTTTTACTT+TGG | + | chr4.4:46098287-46098306 | MS.gene007746:intron | 25.0% |
| !!! | TCGATAATTGATAACGAAAA+TGG | - | chr4.4:46096573-46096592 | None:intergenic | 25.0% |
| !!! | TGTAGCTATTTGTTTTTTTG+TGG | + | chr4.4:46097255-46097274 | MS.gene007746:intron | 25.0% |
| AACGAAAATGGAGAATTGAA+CGG | - | chr4.4:46096561-46096580 | None:intergenic | 30.0% | |
| AAGTTATTCCATAGAGCTTA+TGG | + | chr4.4:46097033-46097052 | MS.gene007746:intron | 30.0% | |
| AATACAGTGGATAGAATGTA+AGG | + | chr4.4:46099173-46099192 | MS.gene007746:intron | 30.0% | |
| AATAGGCTAAACAATTTGAC+TGG | - | chr4.4:46099496-46099515 | None:intergenic | 30.0% | |
| AGGATTCTCCAATTAAAACT+AGG | + | chr4.4:46098796-46098815 | MS.gene007746:intron | 30.0% | |
| ATACAGTGGATAGAATGTAA+GGG | + | chr4.4:46099174-46099193 | MS.gene007746:intron | 30.0% | |
| ATAGGCTAAACAATTTGACT+GGG | - | chr4.4:46099495-46099514 | None:intergenic | 30.0% | |
| CAATAGACAAGTTATCATAG+AGG | - | chr4.4:46099617-46099636 | None:intergenic | 30.0% | |
| CATATGAACTTGTCTTGATT+TGG | + | chr4.4:46096707-46096726 | MS.gene007746:intron | 30.0% | |
| GGTACAAAAAATGGAAACTA+AGG | - | chr4.4:46097503-46097522 | None:intergenic | 30.0% | |
| TCTTAAGTATACTGTATACG+TGG | + | chr4.4:46097195-46097214 | MS.gene007746:intron | 30.0% | |
| TGTGGTATGTAGAAAACTAT+GGG | + | chr4.4:46098390-46098409 | MS.gene007746:intron | 30.0% | |
| ! | GCTTCTTGAATCTCTTATTT+AGG | + | chr4.4:46097574-46097593 | MS.gene007746:intron | 30.0% |
| !! | AGCCGTTTTCATAAGATTAT+TGG | + | chr4.4:46096913-46096932 | MS.gene007746:intron | 30.0% |
| !! | CAGCCATAACTTTTAAGAAT+TGG | - | chr4.4:46099526-46099545 | None:intergenic | 30.0% |
| !!! | GTTTTTTTGGTTAGTGAGAA+TGG | + | chr4.4:46096603-46096622 | MS.gene007746:intron | 30.0% |
| !!! | TTGTTTTTTTGTGGATGAGT+AGG | + | chr4.4:46097264-46097283 | MS.gene007746:intron | 30.0% |
| !!! | TTTTTGTTGTTGTGAAACAC+AGG | + | chr4.4:46097759-46097778 | MS.gene007746:intron | 30.0% |
| AAAGCTGTTGCAGTTCTTAA+GGG | + | chr4.4:46096469-46096488 | MS.gene007746:CDS | 35.0% | |
| AACATAATTGCTGATGCCAA+CGG | + | chr4.4:46097670-46097689 | MS.gene007746:CDS | 35.0% | |
| AACTGGTTAGGATTGAAATG+TGG | - | chr4.4:46097601-46097620 | None:intergenic | 35.0% | |
| ACGAAAATGGAGAATTGAAC+GGG | - | chr4.4:46096560-46096579 | None:intergenic | 35.0% | |
| ACTCTTACTCAAGAAAACGA+AGG | + | chr4.4:46096517-46096536 | MS.gene007746:CDS | 35.0% | |
| ATAATGGCTACATATCACAG+GGG | + | chr4.4:46098162-46098181 | MS.gene007746:intron | 35.0% | |
| ATGTAAACAAGCATTACCGT+TGG | - | chr4.4:46097689-46097708 | None:intergenic | 35.0% | |
| ATTGAACGGGATTAAGAAGA+TGG | - | chr4.4:46096547-46096566 | None:intergenic | 35.0% | |
| CTATTGTGCTTGATTGTTTC+AGG | + | chr4.4:46099631-46099650 | MS.gene007746:intron | 35.0% | |
| CTGTGGTATGTAGAAAACTA+TGG | + | chr4.4:46098389-46098408 | MS.gene007746:intron | 35.0% | |
| CTTGGATATGAATCAATGTC+TGG | + | chr4.4:46098850-46098869 | MS.gene007746:intron | 35.0% | |
| CTTGTTGGAAACCAATATGT+GGG | - | chr4.4:46098503-46098522 | None:intergenic | 35.0% | |
| GATACTAGAGAAATTGTGAC+TGG | + | chr4.4:46098709-46098728 | MS.gene007746:intron | 35.0% | |
| GCTTATTTCCATAAGCTCTA+TGG | - | chr4.4:46097044-46097063 | None:intergenic | 35.0% | |
| GTTTATTTGAGCTTGTCTAC+CGG | - | chr4.4:46097138-46097157 | None:intergenic | 35.0% | |
| TAAATCAGAATTAGACCCAC+TGG | - | chr4.4:46097888-46097907 | None:intergenic | 35.0% | |
| TTAAGCTCGTTATCCAAACA+TGG | - | chr4.4:46096734-46096753 | None:intergenic | 35.0% | |
| TTGAACGGGATTAAGAAGAT+GGG | - | chr4.4:46096546-46096565 | None:intergenic | 35.0% | |
| ! | AAGAAGAGCATGTTTAGGAT+GGG | - | chr4.4:46097160-46097179 | None:intergenic | 35.0% |
| ! | AAGTAGCTAACTGTGTTGTT+TGG | + | chr4.4:46097942-46097961 | MS.gene007746:intron | 35.0% |
| ! | ACAGTTAGCTACTTTCAACA+AGG | - | chr4.4:46097936-46097955 | None:intergenic | 35.0% |
| ! | ACGACTCTTTGAGAATTGTA+TGG | - | chr4.4:46098561-46098580 | None:intergenic | 35.0% |
| ! | ACTTGTTGGAAACCAATATG+TGG | - | chr4.4:46098504-46098523 | None:intergenic | 35.0% |
| ! | AGATAATGGCTACATATCAC+AGG | + | chr4.4:46098160-46098179 | MS.gene007746:intron | 35.0% |
| ! | ATACGAACATTGACTGTTGT+TGG | - | chr4.4:46097291-46097310 | None:intergenic | 35.0% |
| ! | CATAGTTTTCTACATACCAC+AGG | - | chr4.4:46098391-46098410 | None:intergenic | 35.0% |
| ! | GATAATGGCTACATATCACA+GGG | + | chr4.4:46098161-46098180 | MS.gene007746:intron | 35.0% |
| ! | TAAGAAGAGCATGTTTAGGA+TGG | - | chr4.4:46097161-46097180 | None:intergenic | 35.0% |
| ! | TACAGTCTTTTCCGAGTATA+GGG | + | chr4.4:46099005-46099024 | MS.gene007746:intron | 35.0% |
| ! | TTACAGTCTTTTCCGAGTAT+AGG | + | chr4.4:46099004-46099023 | MS.gene007746:intron | 35.0% |
| ! | TTATTATACAGTAAGGGTGC+AGG | - | chr4.4:46099225-46099244 | None:intergenic | 35.0% |
| !! | ACATTGATTCATATCCAAGC+AGG | - | chr4.4:46098849-46098868 | None:intergenic | 35.0% |
| !! | AGCTTGGTCTTGATTTATAG+CGG | + | chr4.4:46098600-46098619 | MS.gene007746:intron | 35.0% |
| !! | CAAAACTGTGTGTTACTTGT+TGG | - | chr4.4:46098518-46098537 | None:intergenic | 35.0% |
| !! | GTTGTTTTCATATGCTATCC+TGG | + | chr4.4:46096845-46096864 | MS.gene007746:intron | 35.0% |
| !! | TTTGTTCCTATGGTTTGGTT+TGG | + | chr4.4:46097530-46097549 | MS.gene007746:intron | 35.0% |
| AAATCACTTGTGAGGCTGTT+TGG | - | chr4.4:46097113-46097132 | None:intergenic | 40.0% | |
| AACTATAGTTCTTCTGCCAG+TGG | + | chr4.4:46097869-46097888 | MS.gene007746:intron | 40.0% | |
| AAGAACTGCAACAGCTTTCT+TGG | - | chr4.4:46096467-46096486 | None:intergenic | 40.0% | |
| AATCACTTGTGAGGCTGTTT+GGG | - | chr4.4:46097112-46097131 | None:intergenic | 40.0% | |
| AATCCTAACCAGTTGACACA+CGG | + | chr4.4:46097607-46097626 | MS.gene007746:CDS | 40.0% | |
| ACAGTCAATGTTCGTATCAC+TGG | + | chr4.4:46097294-46097313 | MS.gene007746:CDS | 40.0% | |
| ACTAGAGAAATTGTGACTGG+AGG | + | chr4.4:46098712-46098731 | MS.gene007746:intron | 40.0% | |
| ACTATAGTTCTTCTGCCAGT+GGG | + | chr4.4:46097870-46097889 | MS.gene007746:intron | 40.0% | |
| AGTAACAACACCTTCAACAG+TGG | - | chr4.4:46096500-46096519 | None:intergenic | 40.0% | |
| AGTATGGTGATACCACCAAT+GGG | + | chr4.4:46097450-46097469 | MS.gene007746:CDS | 40.0% | |
| ATCCAAGCAGGCAACAAAAT+GGG | - | chr4.4:46098837-46098856 | None:intergenic | 40.0% | |
| ATGCTATCCTGGAGAGATTA+TGG | + | chr4.4:46096856-46096875 | MS.gene007746:intron | 40.0% | |
| CATCAGCAATTATGTTTCCC+AGG | - | chr4.4:46097666-46097685 | None:intergenic | 40.0% | |
| CCTCTGCGTTGAAAACTTTA+TGG | + | chr4.4:46097710-46097729 | MS.gene007746:intron | 40.0% | |
| CTCATTTCCATAATCTCTCC+AGG | - | chr4.4:46096866-46096885 | None:intergenic | 40.0% | |
| CTGGAGAGATTATGGAAATG+AGG | + | chr4.4:46096864-46096883 | MS.gene007746:intron | 40.0% | |
| CTTGAAGATGACCTTGGAAA+GGG | + | chr4.4:46098032-46098051 | MS.gene007746:CDS | 40.0% | |
| GAAAGCTGTTGCAGTTCTTA+AGG | + | chr4.4:46096468-46096487 | MS.gene007746:CDS | 40.0% | |
| TACCGGAAAAATCACTTGTG+AGG | - | chr4.4:46097121-46097140 | None:intergenic | 40.0% | |
| TATCCAAGCAGGCAACAAAA+TGG | - | chr4.4:46098838-46098857 | None:intergenic | 40.0% | |
| TGAAGATGAAATCCGTCATG+CGG | + | chr4.4:46097636-46097655 | MS.gene007746:CDS | 40.0% | |
| TTCAAGCTCATGAACCACTA+AGG | - | chr4.4:46098018-46098037 | None:intergenic | 40.0% | |
| TTTATCTTGCAGCACGAGTA+TGG | + | chr4.4:46097434-46097453 | MS.gene007746:intron | 40.0% | |
| ! | AGCCTCACAAGTGATTTTTC+CGG | + | chr4.4:46097116-46097135 | MS.gene007746:intron | 40.0% |
| ! | CATGAACTTAGTTTGAGCAC+TGG | + | chr4.4:46098345-46098364 | MS.gene007746:CDS | 40.0% |
| ! | CCATAAAGTTTTCAACGCAG+AGG | - | chr4.4:46097713-46097732 | None:intergenic | 40.0% |
| ! | TTGATTGTTTCAGGTGTGGT+TGG | + | chr4.4:46099640-46099659 | MS.gene007746:intron | 40.0% |
| !! | AAGTTGGATTGGCAATACAG+TGG | + | chr4.4:46099160-46099179 | MS.gene007746:intron | 40.0% |
| AAGGGTAACTCCACTGTTGA+AGG | + | chr4.4:46096487-46096506 | MS.gene007746:CDS | 45.0% | |
| AGAAGAGAGTGAGAAGTGAG+TGG | - | chr4.4:46096349-46096368 | None:intergenic | 45.0% | |
| ATCATGCAGATACCACTCAC+TGG | + | chr4.4:46097969-46097988 | MS.gene007746:intron | 45.0% | |
| CATGAGCTTGAAGATGACCT+TGG | + | chr4.4:46098026-46098045 | MS.gene007746:CDS | 45.0% | |
| CTCTCCCAATGACTGAATTG+GGG | - | chr4.4:46097995-46098014 | None:intergenic | 45.0% | |
| CTTCAGCCAAACCAAACCAT+AGG | - | chr4.4:46097539-46097558 | None:intergenic | 45.0% | |
| CTTCTCCGATCATCTTTCTC+CGG | + | chr4.4:46096364-46096383 | MS.gene007746:CDS | 45.0% | |
| GAAGATGAAATCCGTCATGC+GGG | + | chr4.4:46097637-46097656 | MS.gene007746:CDS | 45.0% | |
| GAATTGAGGAGAGAGCTTGA+CGG | - | chr4.4:46096395-46096414 | None:intergenic | 45.0% | |
| GAGTATGGTGATACCACCAA+TGG | + | chr4.4:46097449-46097468 | MS.gene007746:CDS | 45.0% | |
| GCTCTCCCAATGACTGAATT+GGG | - | chr4.4:46097996-46098015 | None:intergenic | 45.0% | |
| GCTTGAAGATGACCTTGGAA+AGG | + | chr4.4:46098031-46098050 | MS.gene007746:CDS | 45.0% | |
| GGATGAACTAACCCTTTCCA+AGG | - | chr4.4:46098046-46098065 | None:intergenic | 45.0% | |
| GGCAACAATCGTTGACAATC+AGG | + | chr4.4:46097791-46097810 | MS.gene007746:CDS | 45.0% | |
| TTTCTTGGCAGCAGCAACAA+CGG | - | chr4.4:46096452-46096471 | None:intergenic | 45.0% | |
| ! | ATACAGTAAGGGTGCAGGTT+AGG | - | chr4.4:46099220-46099239 | None:intergenic | 45.0% |
| ! | CGCTGCATTTTCCCACATAT+TGG | + | chr4.4:46098489-46098508 | MS.gene007746:intron | 45.0% |
| ! | CTGGAATTTGGAACGCGAAA+GGG | - | chr4.4:46096422-46096441 | None:intergenic | 45.0% |
| ! | GTGCTTGATTGTTTCAGGTG+TGG | + | chr4.4:46099636-46099655 | MS.gene007746:intron | 45.0% |
| ! | TACAGTAAGGGTGCAGGTTA+GGG | - | chr4.4:46099219-46099238 | None:intergenic | 45.0% |
| ! | TTCCCATTTTGTTGCCTGCT+TGG | + | chr4.4:46098832-46098851 | MS.gene007746:intron | 45.0% |
| !! | AGTTTGAGCACTGGAAATGC+CGG | + | chr4.4:46098354-46098373 | MS.gene007746:CDS | 45.0% |
| !! | GCATGACGGATTTCATCTTC+AGG | - | chr4.4:46097637-46097656 | None:intergenic | 45.0% |
| !! | GTCTTGATTTGGGCCATGTT+TGG | + | chr4.4:46096718-46096737 | MS.gene007746:intron | 45.0% |
| AACCATGAAGCCCTGGAGTA+AGG | - | chr4.4:46097320-46097339 | None:intergenic | 50.0% | |
| AACGGAGAGAGGCTGGAATT+TGG | - | chr4.4:46096434-46096453 | None:intergenic | 50.0% | |
| ACCAATGGGTGTATCTCGAC+AGG | + | chr4.4:46097464-46097483 | MS.gene007746:CDS | 50.0% | |
| ACCACAGGCTAATCTTCCAC+CGG | - | chr4.4:46098376-46098395 | None:intergenic | 50.0% | |
| ACCTGTCGAGATACACCCAT+TGG | - | chr4.4:46097468-46097487 | None:intergenic | 50.0% | |
| ACTGGCCCCAATTCAGTCAT+TGG | + | chr4.4:46097987-46098006 | MS.gene007746:CDS | 50.0% | |
| AGACGCCGGAGAAAGATGAT+CGG | - | chr4.4:46096372-46096391 | None:intergenic | 50.0% | |
| AGGTGAAAACCATGAAGCCC+TGG | - | chr4.4:46097327-46097346 | None:intergenic | 50.0% | |
| AGTCATTGGGAGAGCCTTAG+TGG | + | chr4.4:46098001-46098020 | MS.gene007746:CDS | 50.0% | |
| ATGGCTACATATCACAGGGG+AGG | + | chr4.4:46098165-46098184 | MS.gene007746:intron | 50.0% | |
| ATTAGTGACATAGGCGACGC+AGG | - | chr4.4:46099292-46099311 | None:intergenic | 50.0% | |
| CGCGAAAGGGTTGAGAATTG+AGG | - | chr4.4:46096409-46096428 | None:intergenic | 50.0% | |
| CTGGCCCCAATTCAGTCATT+GGG | + | chr4.4:46097988-46098007 | MS.gene007746:CDS | 50.0% | |
| GCATCTGCTCGTACTTATGC+AGG | + | chr4.4:46098318-46098337 | MS.gene007746:intron | 50.0% | |
| GGCTCTCCCAATGACTGAAT+TGG | - | chr4.4:46097997-46098016 | None:intergenic | 50.0% | |
| TCTGCTCGTACTTATGCAGG+TGG | + | chr4.4:46098321-46098340 | MS.gene007746:intron | 50.0% | |
| TGTCGAGATACACCCATTGG+TGG | - | chr4.4:46097465-46097484 | None:intergenic | 50.0% | |
| ! | AGGGCTTCATGGTTTTCACC+TGG | + | chr4.4:46097326-46097345 | MS.gene007746:CDS | 50.0% |
| ! | GAGAGTGTGACGCCATTGTT+AGG | - | chr4.4:46096312-46096331 | None:intergenic | 50.0% |
| ! | GCTGGAATTTGGAACGCGAA+AGG | - | chr4.4:46096423-46096442 | None:intergenic | 50.0% |
| ! | GGCATGAAGTATCACTCACC+AGG | - | chr4.4:46097347-46097366 | None:intergenic | 50.0% |
| !! | GTATCACTGGCCTTACTCCA+GGG | + | chr4.4:46097307-46097326 | MS.gene007746:CDS | 50.0% |
| ACTGAATTGGGGCCAGTGAG+TGG | - | chr4.4:46097984-46098003 | None:intergenic | 55.0% | |
| CAGAGTGCACATCCTACACG+GGG | - | chr4.4:46099469-46099488 | None:intergenic | 55.0% | |
| CGCAGAGTGCACATCCTACA+CGG | - | chr4.4:46099471-46099490 | None:intergenic | 55.0% | |
| GAGTGAGAAGTGAGTGGCGA+AGG | - | chr4.4:46096343-46096362 | None:intergenic | 55.0% | |
| GCACCGTGTGTCAACTGGTT+AGG | - | chr4.4:46097613-46097632 | None:intergenic | 55.0% | |
| GCAGAGTGCACATCCTACAC+GGG | - | chr4.4:46099470-46099489 | None:intergenic | 55.0% | |
| ! | GTGAAACACAGGCGTTGCAG+AGG | + | chr4.4:46097770-46097789 | MS.gene007746:intron | 55.0% |
| !! | CGTATCACTGGCCTTACTCC+AGG | + | chr4.4:46097306-46097325 | MS.gene007746:CDS | 55.0% |
| !! | TTGAGCACTGGAAATGCCGG+TGG | + | chr4.4:46098357-46098376 | MS.gene007746:CDS | 55.0% |
| AATCCGTCATGCGGGTGACC+TGG | + | chr4.4:46097645-46097664 | MS.gene007746:CDS | 60.0% | |
| AGAGAGCTTGACGGAGACGC+CGG | - | chr4.4:46096386-46096405 | None:intergenic | 60.0% | |
| ATCCGTCATGCGGGTGACCT+GGG | + | chr4.4:46097646-46097665 | MS.gene007746:CDS | 60.0% | |
| CAGCAACAACGGAGAGAGGC+TGG | - | chr4.4:46096441-46096460 | None:intergenic | 60.0% | |
| GCAGCAGCAACAACGGAGAG+AGG | - | chr4.4:46096445-46096464 | None:intergenic | 60.0% | |
| GGCCTTACTCCAGGGCTTCA+TGG | + | chr4.4:46097315-46097334 | MS.gene007746:CDS | 60.0% | |
| GGGTTAAACCTGCCCCGTGT+AGG | + | chr4.4:46099454-46099473 | MS.gene007746:intron | 60.0% | |
| TGACATAGGCGACGCAGGCA+TGG | - | chr4.4:46099287-46099306 | None:intergenic | 60.0% | |
| TTCCCAGGTCACCCGCATGA+CGG | - | chr4.4:46097651-46097670 | None:intergenic | 60.0% | |
| !! | CAGGAGCACCGTGTGTCAAC+TGG | - | chr4.4:46097618-46097637 | None:intergenic | 60.0% |
| !! | GCCGGTGGAAGATTAGCCTG+TGG | + | chr4.4:46098372-46098391 | MS.gene007746:CDS | 60.0% |
| GGCATGGCGCAGAGCAGGTT+AGG | - | chr4.4:46099271-46099290 | None:intergenic | 65.0% | |
| GTGCACATCCTACACGGGGC+AGG | - | chr4.4:46099465-46099484 | None:intergenic | 65.0% | |
| ACGCAGGCATGGCGCAGAGC+AGG | - | chr4.4:46099276-46099295 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 46096304 | 46099678 | 46096304 | ID=MS.gene007746 |
| chr4.4 | mRNA | 46096304 | 46099678 | 46096304 | ID=MS.gene007746.t1;Parent=MS.gene007746 |
| chr4.4 | exon | 46096304 | 46096538 | 46096304 | ID=MS.gene007746.t1.exon1;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46096304 | 46096538 | 46096304 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46097286 | 46097347 | 46097286 | ID=MS.gene007746.t1.exon2;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46097286 | 46097347 | 46097286 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46097446 | 46097485 | 46097446 | ID=MS.gene007746.t1.exon3;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46097446 | 46097485 | 46097446 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46097596 | 46097691 | 46097596 | ID=MS.gene007746.t1.exon4;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46097596 | 46097691 | 46097596 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46097781 | 46097812 | 46097781 | ID=MS.gene007746.t1.exon5;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46097781 | 46097812 | 46097781 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46097978 | 46098053 | 46097978 | ID=MS.gene007746.t1.exon6;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46097978 | 46098053 | 46097978 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46098340 | 46098393 | 46098340 | ID=MS.gene007746.t1.exon7;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46098340 | 46098393 | 46098340 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| chr4.4 | exon | 46099653 | 46099678 | 46099653 | ID=MS.gene007746.t1.exon8;Parent=MS.gene007746.t1 |
| chr4.4 | CDS | 46099653 | 46099678 | 46099653 | ID=cds.MS.gene007746.t1;Parent=MS.gene007746.t1 |
| Gene Sequence |
| Protein sequence |
