Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71901.t1 | XP_003608775.1 | 96.4 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 4.10E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71901.t1 | Q9LD47 | 72.8 | 250 | 63 | 2 | 2 | 250 | 74 | 319 | 6.0e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71901.t1 | G7JK60 | 96.4 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 3.0e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049760 | MS.gene71901 | 0.83772 | 4.40E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71901 | MS.gene024631 | PPI |
| MS.gene71901 | MS.gene049760 | PPI |
| MS.gene71901 | MS.gene03709 | PPI |
| MS.gene71901 | MS.gene09134 | PPI |
| MS.gene71901 | MS.gene066545 | PPI |
| MS.gene71901 | MS.gene066547 | PPI |
| MS.gene71901 | MS.gene007746 | PPI |
| MS.gene71901 | MS.gene024629 | PPI |
| MS.gene22685 | MS.gene71901 | PPI |
| MS.gene29281 | MS.gene71901 | PPI |
| MS.gene71901 | MS.gene78312 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71901.t1 | MTR_4g101820 | 96.414 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 0.0 | 506 |
| MS.gene71901.t1 | MTR_7g114240 | 34.234 | 111 | 65 | 2 | 104 | 206 | 13 | 123 | 6.78e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71901.t1 | AT1G12520 | 72.800 | 250 | 63 | 2 | 2 | 250 | 74 | 319 | 3.75e-135 | 384 |
| MS.gene71901.t1 | AT1G12520 | 76.316 | 228 | 53 | 1 | 24 | 250 | 1 | 228 | 2.40e-130 | 368 |
| MS.gene71901.t1 | AT1G12520 | 74.863 | 183 | 45 | 1 | 69 | 250 | 1 | 183 | 3.38e-101 | 292 |
| MS.gene71901.t1 | AT2G28190 | 35.833 | 120 | 68 | 3 | 96 | 206 | 67 | 186 | 5.06e-13 | 66.6 |
| MS.gene71901.t1 | AT1G08830 | 31.818 | 110 | 67 | 2 | 105 | 206 | 14 | 123 | 4.13e-11 | 60.1 |
| MS.gene71901.t1 | AT1G08830 | 31.818 | 110 | 67 | 2 | 105 | 206 | 14 | 123 | 4.13e-11 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAGTGGCTGATCTTAT+TGG | 0.270265 | 8.3:-19522936 | MS.gene71901:CDS |
| AATCAGGTTGTTAGGATTCT+TGG | 0.277482 | 8.3:-19525028 | MS.gene71901:CDS |
| TGTCACCAGGGAAGCATTCC+TGG | 0.284728 | 8.3:-19523510 | MS.gene71901:CDS |
| TCCTGGTCTATTAATGAGTT+TGG | 0.306150 | 8.3:-19523493 | MS.gene71901:CDS |
| AAGGGTGAGGCCTTCTACAC+TGG | 0.329684 | 8.3:-19522972 | MS.gene71901:CDS |
| ATTTGAGCAATCAGGTTGTT+AGG | 0.331503 | 8.3:-19525036 | MS.gene71901:CDS |
| TTCTTTGACCCCAGTGTAGA+AGG | 0.374494 | 8.3:+19522962 | None:intergenic |
| TGACGGATTGAACACTTTAC+CGG | 0.379266 | 8.3:+19523444 | None:intergenic |
| TCGCCTGGCTCAAGTAAGTA+TGG | 0.403626 | 8.3:-19523566 | MS.gene71901:CDS |
| GTACCTGAGAAGAGAGATTA+TGG | 0.408288 | 8.3:+19526004 | None:intergenic |
| GATGTTATAGACAGAGTATA+TGG | 0.415903 | 8.3:-19525733 | MS.gene71901:intron |
| AACTTCAGTGGGCTGTCACC+AGG | 0.418853 | 8.3:-19523523 | MS.gene71901:CDS |
| TGATGTGTTACCTGAGTTGC+TGG | 0.424399 | 8.3:-19525878 | MS.gene71901:intron |
| TCTTCAGCCACTTGGTGACC+TGG | 0.447517 | 8.3:-19523015 | MS.gene71901:intron |
| ATAGACCAGGAATGCTTCCC+TGG | 0.473850 | 8.3:+19523505 | None:intergenic |
| CGTTCACATCCAGTGTTCCC+AGG | 0.476668 | 8.3:+19522997 | None:intergenic |
| TGATTGGATCTTCAGCCACT+TGG | 0.478442 | 8.3:-19523023 | MS.gene71901:intron |
| TTAGTTCATCAGAACTTGCT+AGG | 0.478813 | 8.3:+19522759 | None:intergenic |
| GGACCATAATCTCTCTTCTC+AGG | 0.485297 | 8.3:-19526007 | MS.gene71901:intron |
| TGTCTCTGAATTCAAAGGTC+CGG | 0.504920 | 8.3:-19523605 | MS.gene71901:CDS |
| GTTCCATACTTACTTGAGCC+AGG | 0.507267 | 8.3:+19523563 | None:intergenic |
| TGTGTCACTCGCCTCCCATA+TGG | 0.514090 | 8.3:+19522791 | None:intergenic |
| ACTTGGTGACCTGGGAACAC+TGG | 0.521939 | 8.3:-19523006 | MS.gene71901:CDS |
| AGGAATCAAGAATGTGGAGG+TGG | 0.522472 | 8.3:-19525059 | MS.gene71901:CDS |
| GGAGGTGGATTTGAGCAATC+AGG | 0.531013 | 8.3:-19525044 | MS.gene71901:CDS |
| AGGGTGAGGCCTTCTACACT+GGG | 0.539540 | 8.3:-19522971 | MS.gene71901:CDS |
| CTTCAGCCACTTGGTGACCT+GGG | 0.540096 | 8.3:-19523014 | MS.gene71901:intron |
| AGTGAAGCTTTGGAGCAGAC+TGG | 0.542020 | 8.3:-19524983 | MS.gene71901:CDS |
| AATAAGCTGCAAACAATCCA+TGG | 0.544755 | 8.3:-19525672 | MS.gene71901:intron |
| ACACTGGATGTGAACGAAAA+GGG | 0.549598 | 8.3:-19522990 | MS.gene71901:CDS |
| CATGTGATGGCACCACCATA+TGG | 0.553031 | 8.3:-19522806 | MS.gene71901:CDS |
| ATGTGATGGCACCACCATAT+GGG | 0.558693 | 8.3:-19522805 | MS.gene71901:CDS |
| CTGCTCCAAAGCTTCACTCA+TGG | 0.565126 | 8.3:+19524988 | None:intergenic |
| AACACTGGATGTGAACGAAA+AGG | 0.566311 | 8.3:-19522991 | MS.gene71901:CDS |
| AAACGAGGAAAACACTAAAG+AGG | 0.567123 | 8.3:-19523422 | MS.gene71901:intron |
| TAGTTCATCAGAACTTGCTA+GGG | 0.568401 | 8.3:+19522760 | None:intergenic |
| TTAAAACTAACCAGCAACTC+AGG | 0.568886 | 8.3:+19525868 | None:intergenic |
| ACTAGAGGTGCAGCAAGCAC+CGG | 0.584846 | 8.3:-19523463 | MS.gene71901:CDS |
| ACTTCAGTGGGCTGTCACCA+GGG | 0.586367 | 8.3:-19523522 | MS.gene71901:CDS |
| GAATTGAAGCAAACTTCAGT+GGG | 0.590735 | 8.3:-19523534 | MS.gene71901:CDS |
| GCGGCTGTCTCTGAATTCAA+AGG | 0.596170 | 8.3:-19523610 | MS.gene71901:CDS |
| AGAATTGAAGCAAACTTCAG+TGG | 0.596475 | 8.3:-19523535 | MS.gene71901:CDS |
| CTCAGGTAACACATCATGAT+CGG | 0.597257 | 8.3:+19525885 | None:intergenic |
| ACACGGTATAGCTGCTGCAG+TGG | 0.603121 | 8.3:-19522874 | MS.gene71901:CDS |
| GTTATAGACAGAGTATATGG+TGG | 0.606271 | 8.3:-19525730 | MS.gene71901:intron |
| TATAGGAATCAAGAATGTGG+AGG | 0.613868 | 8.3:-19525062 | MS.gene71901:intron |
| GGATGTGAACGAAAAGGGTG+AGG | 0.614241 | 8.3:-19522985 | MS.gene71901:CDS |
| ACCAAACTCATTAATAGACC+AGG | 0.615247 | 8.3:+19523492 | None:intergenic |
| ATTGGACAAGGAGTGCCAGA+AGG | 0.627026 | 8.3:-19524944 | MS.gene71901:intron |
| TAGGATTCTTGGTTCAACAC+CGG | 0.627780 | 8.3:-19525017 | MS.gene71901:CDS |
| GGTTGCTAGAAGTGCAGCAG+TGG | 0.630108 | 8.3:-19522853 | MS.gene71901:CDS |
| GTCACTCGCCTCCCATATGG+TGG | 0.633316 | 8.3:+19522794 | None:intergenic |
| AAAGCTCGATTAATTGGACA+AGG | 0.655932 | 8.3:-19524956 | MS.gene71901:CDS |
| ATGGTGGATATGAAATGCGA+AGG | 0.670127 | 8.3:-19525714 | MS.gene71901:CDS |
| TGATGGCACCACCATATGGG+AGG | 0.673765 | 8.3:-19522802 | MS.gene71901:CDS |
| AGTGTTCAATCCGTCAAACG+AGG | 0.687984 | 8.3:-19523437 | MS.gene71901:CDS |
| GAGTTTGGTGATCTGACTAG+AGG | 0.700866 | 8.3:-19523478 | MS.gene71901:CDS |
| GTTGCTAGAAGTGCAGCAGT+GGG | 0.712487 | 8.3:-19522852 | MS.gene71901:CDS |
| ACTGAAGATAAATCAGAACA+CGG | 0.722342 | 8.3:-19522891 | MS.gene71901:CDS |
| AGTGTTCCCAGGTCACCAAG+TGG | 0.723488 | 8.3:+19523008 | None:intergenic |
| GGGTGAGGCCTTCTACACTG+GGG | 0.799147 | 8.3:-19522970 | MS.gene71901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAGAAAATAAAATATAAA+AGG | + | chr8.3:19522858-19522877 | None:intergenic | 10.0% |
| !! | GTTATTTATAAACATTAAAA+TGG | - | chr8.3:19525456-19525475 | MS.gene71901:intron | 10.0% |
| !! | AAACAGAAAAAAAATGAAAT+TGG | + | chr8.3:19522946-19522965 | None:intergenic | 15.0% |
| !! | AATTAGGATTAAATAATAAG+AGG | + | chr8.3:19524287-19524306 | None:intergenic | 15.0% |
| !! | AGAGGAATAATAAATAATTA+AGG | + | chr8.3:19522797-19522816 | None:intergenic | 15.0% |
| !! | ATAAAATATAAAAGGATTAG+AGG | + | chr8.3:19522850-19522869 | None:intergenic | 15.0% |
| !! | ATTCTATTATTTAACCTTAA+TGG | - | chr8.3:19524260-19524279 | MS.gene71901:intron | 15.0% |
| !! | TTATAAACATTAAAATGGAT+AGG | - | chr8.3:19525461-19525480 | MS.gene71901:intron | 15.0% |
| !! | TTCTATTATTTAACCTTAAT+GGG | - | chr8.3:19524261-19524280 | MS.gene71901:intron | 15.0% |
| !!! | AATAGTTGAAATTGATATTT+TGG | - | chr8.3:19525588-19525607 | MS.gene71901:intron | 15.0% |
| !!! | AATTCAATTAATTGTTTTCA+TGG | - | chr8.3:19525068-19525087 | MS.gene71901:intron | 15.0% |
| !!! | ATTTCATTTTTTTTCTGTTT+AGG | - | chr8.3:19522946-19522965 | MS.gene71901:CDS | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr8.3:19524238-19524257 | None:intergenic | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | + | chr8.3:19524239-19524258 | None:intergenic | 15.0% |
| !! | ATTAAATTTAAGAATATCCG+AGG | + | chr8.3:19524400-19524419 | None:intergenic | 20.0% |
| !! | TAATTTATTTGGATGACAAT+TGG | - | chr8.3:19524416-19524435 | MS.gene71901:intron | 20.0% |
| !! | TGATAAAGCAAGAAAAAAAA+AGG | + | chr8.3:19523862-19523881 | None:intergenic | 20.0% |
| !! | TTATTAGTAAGTTGTCAATT+AGG | + | chr8.3:19524303-19524322 | None:intergenic | 20.0% |
| !!! | AGCGTAAAAAAATTCTTTTA+AGG | - | chr8.3:19525414-19525433 | MS.gene71901:intron | 20.0% |
| !!! | ATGAAACTTTTAATTCATGA+AGG | - | chr8.3:19525505-19525524 | MS.gene71901:intron | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr8.3:19524237-19524256 | None:intergenic | 20.0% |
| !!! | TATTAACCTTTTCTAAGTAA+GGG | - | chr8.3:19525623-19525642 | MS.gene71901:intron | 20.0% |
| !!! | TTATTAACCTTTTCTAAGTA+AGG | - | chr8.3:19525622-19525641 | MS.gene71901:intron | 20.0% |
| ! | AAATATAAAAGGATTAGAGG+CGG | + | chr8.3:19522847-19522866 | None:intergenic | 25.0% |
| ! | AACACAAATATGAAAATCTC+AGG | + | chr8.3:19523667-19523686 | None:intergenic | 25.0% |
| ! | AATTAAGAGTGAAATTAGAG+AGG | + | chr8.3:19522815-19522834 | None:intergenic | 25.0% |
| ! | ACAATTTCAAACACAACTTA+AGG | - | chr8.3:19525722-19525741 | MS.gene71901:CDS | 25.0% |
| ! | ACACAAATATGAAAATCTCA+GGG | + | chr8.3:19523666-19523685 | None:intergenic | 25.0% |
| ! | AGTAACAATAATAGTTGTAG+AGG | - | chr8.3:19524120-19524139 | MS.gene71901:intron | 25.0% |
| ! | ATACTTTCAATGTTAATGAC+AGG | + | chr8.3:19524737-19524756 | None:intergenic | 25.0% |
| ! | ATAGCATAAACAAGAAGAAA+CGG | - | chr8.3:19524063-19524082 | MS.gene71901:intron | 25.0% |
| ! | GAATGAATAGATATGATTTC+AGG | + | chr8.3:19523528-19523547 | None:intergenic | 25.0% |
| ! | GCAACTAAACATATATTTAC+AGG | + | chr8.3:19524987-19525006 | None:intergenic | 25.0% |
| ! | GTAACAATAATAGTTGTAGA+GGG | - | chr8.3:19524121-19524140 | MS.gene71901:intron | 25.0% |
| ! | TAAAACAAAAACACTTACCA+TGG | + | chr8.3:19523124-19523143 | None:intergenic | 25.0% |
| ! | TGACAATTGGAGTATAATAT+TGG | - | chr8.3:19524429-19524448 | MS.gene71901:intron | 25.0% |
| ! | TGTAAAGCAAAAGAAAGATT+CGG | + | chr8.3:19525131-19525150 | None:intergenic | 25.0% |
| ! | TTCTTAATGATGTATCCAAA+TGG | - | chr8.3:19525541-19525560 | MS.gene71901:intron | 25.0% |
| !! | ATATTGTGTTTGTTAGACAA+TGG | + | chr8.3:19524849-19524868 | None:intergenic | 25.0% |
| !! | CTGTTTGCAATTTTTATGAT+AGG | - | chr8.3:19523888-19523907 | MS.gene71901:intron | 25.0% |
| !! | GCTAGATGATTTATCAATTT+TGG | - | chr8.3:19524957-19524976 | MS.gene71901:CDS | 25.0% |
| !! | TACAGACTTTTTAATATCAG+CGG | - | chr8.3:19525147-19525166 | MS.gene71901:intron | 25.0% |
| !! | TTAATTGTTTTCATGGTTTC+AGG | - | chr8.3:19525075-19525094 | MS.gene71901:intron | 25.0% |
| !! | TTTTATAGGAATCAAGAATG+TGG | - | chr8.3:19523711-19523730 | MS.gene71901:intron | 25.0% |
| !!! | AAAAACATTGAAAGTATTGC+TGG | - | chr8.3:19524768-19524787 | MS.gene71901:intron | 25.0% |
| !!! | TCTATTTCATTCTAGCTTAT+TGG | - | chr8.3:19524815-19524834 | MS.gene71901:intron | 25.0% |
| !!! | TGTGCTCTCATTTTTTTTAT+AGG | - | chr8.3:19523697-19523716 | MS.gene71901:intron | 25.0% |
| AAAAAAAAAGGTGAACCTTC+TGG | + | chr8.3:19523850-19523869 | None:intergenic | 30.0% | |
| AAATAATAAGAGGCCCATTA+AGG | + | chr8.3:19524277-19524296 | None:intergenic | 30.0% | |
| AATTGGAGTATAATATTGGC+AGG | - | chr8.3:19524433-19524452 | MS.gene71901:intron | 30.0% | |
| ACTGAAGATAAATCAGAACA+CGG | - | chr8.3:19525885-19525904 | MS.gene71901:CDS | 30.0% | |
| ATCAAATCCATTCAACCATT+TGG | + | chr8.3:19525559-19525578 | None:intergenic | 30.0% | |
| ATTCAAAAACTGTTGAACCT+GGG | + | chr8.3:19524892-19524911 | None:intergenic | 30.0% | |
| ATTTCAAACACAACTTAAGG+AGG | - | chr8.3:19525725-19525744 | MS.gene71901:CDS | 30.0% | |
| ATTTCTGTGACATACACAAA+AGG | + | chr8.3:19524590-19524609 | None:intergenic | 30.0% | |
| CAACAGAGAATTAACACAAA+AGG | + | chr8.3:19523947-19523966 | None:intergenic | 30.0% | |
| GACGGTTTATACTATTATGA+CGG | - | chr8.3:19524688-19524707 | MS.gene71901:intron | 30.0% | |
| GATGTTATAGACAGAGTATA+TGG | - | chr8.3:19523043-19523062 | MS.gene71901:intron | 30.0% | |
| GGATGGTAATTTAGGAAAAT+AGG | - | chr8.3:19524084-19524103 | MS.gene71901:intron | 30.0% | |
| GGTAAAAAAGCTCGATTAAT+TGG | - | chr8.3:19523814-19523833 | MS.gene71901:intron | 30.0% | |
| GTGTTTGGTAAGTTATACAT+TGG | + | chr8.3:19523622-19523641 | None:intergenic | 30.0% | |
| TATTCAAAAACTGTTGAACC+TGG | + | chr8.3:19524893-19524912 | None:intergenic | 30.0% | |
| TATTGTCCTAACCTTCAATT+TGG | + | chr8.3:19523996-19524015 | None:intergenic | 30.0% | |
| TTAAACTGTGTATCCAAACA+AGG | + | chr8.3:19523194-19523213 | None:intergenic | 30.0% | |
| TTATCACCCTTACTTAGAAA+AGG | + | chr8.3:19525632-19525651 | None:intergenic | 30.0% | |
| ! | ACAGAATACGTTTTCTGTTT+AGG | + | chr8.3:19524190-19524209 | None:intergenic | 30.0% |
| ! | CAGAATACGTTTTCTGTTTA+GGG | + | chr8.3:19524189-19524208 | None:intergenic | 30.0% |
| ! | CTTTTGTGTTAATTCTCTGT+TGG | - | chr8.3:19523945-19523964 | MS.gene71901:intron | 30.0% |
| ! | GCGATATGCTTTAAGTTATT+AGG | - | chr8.3:19523168-19523187 | MS.gene71901:intron | 30.0% |
| !! | AAAGAAAGATTCGGTGAAAT+TGG | + | chr8.3:19525122-19525141 | None:intergenic | 30.0% |
| !! | ATCATGTCTGATTGATAATG+TGG | + | chr8.3:19524625-19524644 | None:intergenic | 30.0% |
| !! | CGTTTTAAGTAATTAGTAGG+TGG | + | chr8.3:19524345-19524364 | None:intergenic | 30.0% |
| !! | TTAAGTTATTAGGCCTTGTT+TGG | - | chr8.3:19523178-19523197 | MS.gene71901:intron | 30.0% |
| !! | TTCTTTTAAGGATTGATGAC+TGG | - | chr8.3:19525426-19525445 | MS.gene71901:intron | 30.0% |
| !! | TTGATAATGTGGATCACTAA+AGG | + | chr8.3:19524614-19524633 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTTTAACTGCAGT+AGG | - | chr8.3:19524933-19524952 | MS.gene71901:intron | 30.0% |
| AAAAACCATGAGTGAAGCTT+TGG | - | chr8.3:19523783-19523802 | MS.gene71901:intron | 35.0% | |
| AAAAAGCTCTGTACATGTGA+TGG | - | chr8.3:19525957-19525976 | MS.gene71901:intron | 35.0% | |
| AAACACAATATACCCATCAG+AGG | - | chr8.3:19524858-19524877 | MS.gene71901:intron | 35.0% | |
| AAACGAGGAAAACACTAAAG+AGG | - | chr8.3:19525354-19525373 | MS.gene71901:intron | 35.0% | |
| AAAGCGAGTATGAATTTGAG+GGG | - | chr8.3:19523548-19523567 | MS.gene71901:CDS | 35.0% | |
| AAAGCTCGATTAATTGGACA+AGG | - | chr8.3:19523820-19523839 | MS.gene71901:intron | 35.0% | |
| AAGCAGAAAATGGGTCTATT+TGG | + | chr8.3:19523459-19523478 | None:intergenic | 35.0% | |
| AAGCTATCTTGGAGAACTTA+TGG | - | chr8.3:19523314-19523333 | MS.gene71901:intron | 35.0% | |
| AATAAGCTGCAAACAATCCA+TGG | - | chr8.3:19523104-19523123 | MS.gene71901:intron | 35.0% | |
| ACCAAACTCATTAATAGACC+AGG | + | chr8.3:19525287-19525306 | None:intergenic | 35.0% | |
| AGAATTGAAGCAAACTTCAG+TGG | - | chr8.3:19525241-19525260 | MS.gene71901:intron | 35.0% | |
| AGTATGCTGAAAGCAGAAAA+TGG | + | chr8.3:19523469-19523488 | None:intergenic | 35.0% | |
| CAAAGCGAGTATGAATTTGA+GGG | - | chr8.3:19523547-19523566 | MS.gene71901:CDS | 35.0% | |
| CATAAACAAGAAGAAACGGA+TGG | - | chr8.3:19524067-19524086 | MS.gene71901:intron | 35.0% | |
| CGAACAACACCAAAAATTTC+CGG | + | chr8.3:19525193-19525212 | None:intergenic | 35.0% | |
| CTAAGTAAGGGTGATAAAGT+TGG | - | chr8.3:19525635-19525654 | MS.gene71901:intron | 35.0% | |
| GAAAATGGGTCTATTTGGAT+CGG | + | chr8.3:19523454-19523473 | None:intergenic | 35.0% | |
| GAAGAAACGGATGGTAATTT+AGG | - | chr8.3:19524076-19524095 | MS.gene71901:intron | 35.0% | |
| GAAGGTTAGGACAATAGTTT+AGG | - | chr8.3:19524000-19524019 | MS.gene71901:intron | 35.0% | |
| GAATTGAAGCAAACTTCAGT+GGG | - | chr8.3:19525242-19525261 | MS.gene71901:intron | 35.0% | |
| GATGTATCCAAATGGTTGAA+TGG | - | chr8.3:19525549-19525568 | MS.gene71901:intron | 35.0% | |
| GTATGCTGAAAGCAGAAAAT+GGG | + | chr8.3:19523468-19523487 | None:intergenic | 35.0% | |
| GTGCTACATTATCATCAAAC+TGG | - | chr8.3:19524790-19524809 | MS.gene71901:intron | 35.0% | |
| GTTATAGACAGAGTATATGG+TGG | - | chr8.3:19523046-19523065 | MS.gene71901:intron | 35.0% | |
| TATAGGAATCAAGAATGTGG+AGG | - | chr8.3:19523714-19523733 | MS.gene71901:intron | 35.0% | |
| TCAAAGCGAGTATGAATTTG+AGG | - | chr8.3:19523546-19523565 | MS.gene71901:CDS | 35.0% | |
| TCACATTGGATCCTAACATT+AGG | - | chr8.3:19524370-19524389 | MS.gene71901:intron | 35.0% | |
| TCCTGGTCTATTAATGAGTT+TGG | - | chr8.3:19525283-19525302 | MS.gene71901:intron | 35.0% | |
| TGATTGATCACAAGATCCTT+TGG | + | chr8.3:19524035-19524054 | None:intergenic | 35.0% | |
| TTAAAACTAACCAGCAACTC+AGG | + | chr8.3:19522911-19522930 | None:intergenic | 35.0% | |
| TTAAAGCATATCGCATAAGC+AGG | + | chr8.3:19523162-19523181 | None:intergenic | 35.0% | |
| TTTCTGCCAAATTGAAGGTT+AGG | - | chr8.3:19523987-19524006 | MS.gene71901:intron | 35.0% | |
| TTTCTGCTTTCAGCATACTT+GGG | - | chr8.3:19523470-19523489 | MS.gene71901:CDS | 35.0% | |
| ! | AATCAGGTTGTTAGGATTCT+TGG | - | chr8.3:19523748-19523767 | MS.gene71901:intron | 35.0% |
| ! | ATTTGAGCAATCAGGTTGTT+AGG | - | chr8.3:19523740-19523759 | MS.gene71901:intron | 35.0% |
| ! | TGTGCAGAGATGCTATTTAA+AGG | + | chr8.3:19524548-19524567 | None:intergenic | 35.0% |
| ! | TTAGTGTTTTCCTCGTTTGA+CGG | + | chr8.3:19525352-19525371 | None:intergenic | 35.0% |
| ! | TTCAAAGGTCCGGAAATTTT+TGG | - | chr8.3:19525181-19525200 | MS.gene71901:intron | 35.0% |
| ! | TTTTCTGCTTTCAGCATACT+TGG | - | chr8.3:19523469-19523488 | MS.gene71901:CDS | 35.0% |
| ! | TTTTCTTCAGCGTCTAATGA+CGG | - | chr8.3:19524670-19524689 | MS.gene71901:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr8.3:19523303-19523322 | MS.gene71901:intron | 35.0% |
| !! | GGGCGTTTTAAGTAATTAGT+AGG | + | chr8.3:19524348-19524367 | None:intergenic | 35.0% |
| AACACTGGATGTGAACGAAA+AGG | - | chr8.3:19525785-19525804 | MS.gene71901:intron | 40.0% | |
| ACACTGGATGTGAACGAAAA+GGG | - | chr8.3:19525786-19525805 | MS.gene71901:intron | 40.0% | |
| ACTTAAGGAGGTTGCTTGAT+TGG | - | chr8.3:19525737-19525756 | MS.gene71901:intron | 40.0% | |
| ATGTTAGGATCCAATGTGAG+AGG | + | chr8.3:19524369-19524388 | None:intergenic | 40.0% | |
| ATTGGATCCTAACATTAGGC+TGG | - | chr8.3:19524374-19524393 | MS.gene71901:intron | 40.0% | |
| CGCAATTTCTGCCAAATTGA+AGG | - | chr8.3:19523982-19524001 | MS.gene71901:intron | 40.0% | |
| CTCAGGTAACACATCATGAT+CGG | + | chr8.3:19522894-19522913 | None:intergenic | 40.0% | |
| GACATACACAAAAGGATGCT+GGG | + | chr8.3:19524582-19524601 | None:intergenic | 40.0% | |
| GGTCAAAGAAAAACTGAGAG+TGG | - | chr8.3:19525827-19525846 | MS.gene71901:intron | 40.0% | |
| GGTTAGGACAATAGTTTAGG+TGG | - | chr8.3:19524003-19524022 | MS.gene71901:intron | 40.0% | |
| GTACCTGAGAAGAGAGATTA+TGG | + | chr8.3:19522775-19522794 | None:intergenic | 40.0% | |
| GTTTAGGTGGTAGAAACCAA+AGG | - | chr8.3:19524016-19524035 | MS.gene71901:intron | 40.0% | |
| TAGGATTCTTGGTTCAACAC+CGG | - | chr8.3:19523759-19523778 | MS.gene71901:intron | 40.0% | |
| TGACATACACAAAAGGATGC+TGG | + | chr8.3:19524583-19524602 | None:intergenic | 40.0% | |
| TGTCTCTGAATTCAAAGGTC+CGG | - | chr8.3:19525171-19525190 | MS.gene71901:intron | 40.0% | |
| TGTTAGGATCCAATGTGAGA+GGG | + | chr8.3:19524368-19524387 | None:intergenic | 40.0% | |
| ! | CAAACGAGTCTTATCGTGTT+TGG | + | chr8.3:19523637-19523656 | None:intergenic | 40.0% |
| ! | GCTTCACTCATGGTTTTTAC+CGG | + | chr8.3:19523781-19523800 | None:intergenic | 40.0% |
| !! | ATGGTGGATATGAAATGCGA+AGG | - | chr8.3:19523062-19523081 | MS.gene71901:intron | 40.0% |
| !! | TGACGGATTGAACACTTTAC+CGG | + | chr8.3:19525335-19525354 | None:intergenic | 40.0% |
| !!! | AATTTTTGGTGTTGTTCGCC+TGG | - | chr8.3:19525195-19525214 | MS.gene71901:intron | 40.0% |
| AGGAATCAAGAATGTGGAGG+TGG | - | chr8.3:19523717-19523736 | MS.gene71901:intron | 45.0% | |
| AGTGTTCAATCCGTCAAACG+AGG | - | chr8.3:19525339-19525358 | MS.gene71901:intron | 45.0% | |
| ATATCTGTTCACTGTGGCCA+CGG | - | chr8.3:19524460-19524479 | MS.gene71901:intron | 45.0% | |
| ATGTGATGGCACCACCATAT+GGG | - | chr8.3:19525971-19525990 | MS.gene71901:intron | 45.0% | |
| CTGAGAGTGGCTGATCTTAT+TGG | - | chr8.3:19525840-19525859 | MS.gene71901:intron | 45.0% | |
| CTTAAAACGCCCTCTCACAT+TGG | - | chr8.3:19524356-19524375 | MS.gene71901:intron | 45.0% | |
| GATATGTATCAGTGAGACCG+TGG | + | chr8.3:19524480-19524499 | None:intergenic | 45.0% | |
| GGACCATAATCTCTCTTCTC+AGG | - | chr8.3:19522769-19522788 | MS.gene71901:CDS | 45.0% | |
| GGTGTGATATCTGTTCACTG+TGG | - | chr8.3:19524454-19524473 | MS.gene71901:intron | 45.0% | |
| GTTCCATACTTACTTGAGCC+AGG | + | chr8.3:19525216-19525235 | None:intergenic | 45.0% | |
| TGATGTGTTACCTGAGTTGC+TGG | - | chr8.3:19522898-19522917 | MS.gene71901:CDS | 45.0% | |
| TGATTGGATCTTCAGCCACT+TGG | - | chr8.3:19525753-19525772 | MS.gene71901:intron | 45.0% | |
| TGGGCATAATAGCCTCTGAT+GGG | + | chr8.3:19524873-19524892 | None:intergenic | 45.0% | |
| TTCTTTGACCCCAGTGTAGA+AGG | + | chr8.3:19525817-19525836 | None:intergenic | 45.0% | |
| ! | GAGTTTGGTGATCTGACTAG+AGG | - | chr8.3:19525298-19525317 | MS.gene71901:intron | 45.0% |
| ! | TTTCTGTTTAGGGCCAGAGT+AGG | + | chr8.3:19524179-19524198 | None:intergenic | 45.0% |
| !! | CATATAAAAATTAAAATAAT+TGG | + | chr8.3:19523588-19523607 | None:intergenic | 5.0% |
| !!! | ATTCTTAAATTTAATTTATT+TGG | - | chr8.3:19524405-19524424 | MS.gene71901:intron | 5.0% |
| ATAGACCAGGAATGCTTCCC+TGG | + | chr8.3:19525274-19525293 | None:intergenic | 50.0% | |
| CATCAGAGGCTATTATGCCC+AGG | - | chr8.3:19524872-19524891 | MS.gene71901:intron | 50.0% | |
| CATGTGATGGCACCACCATA+TGG | - | chr8.3:19525970-19525989 | MS.gene71901:intron | 50.0% | |
| CTCGTAGAGTAAGCCTACTC+TGG | - | chr8.3:19524163-19524182 | MS.gene71901:intron | 50.0% | |
| CTGCTCCAAAGCTTCACTCA+TGG | + | chr8.3:19523791-19523810 | None:intergenic | 50.0% | |
| CTGGGCATAATAGCCTCTGA+TGG | + | chr8.3:19524874-19524893 | None:intergenic | 50.0% | |
| GCGGCTGTCTCTGAATTCAA+AGG | - | chr8.3:19525166-19525185 | MS.gene71901:intron | 50.0% | |
| GGATGTGAACGAAAAGGGTG+AGG | - | chr8.3:19525791-19525810 | MS.gene71901:intron | 50.0% | |
| TCGCCTGGCTCAAGTAAGTA+TGG | - | chr8.3:19525210-19525229 | MS.gene71901:intron | 50.0% | |
| ! | GGAGGTGGATTTGAGCAATC+AGG | - | chr8.3:19523732-19523751 | MS.gene71901:intron | 50.0% |
| ! | GTTGCTAGAAGTGCAGCAGT+GGG | - | chr8.3:19525924-19525943 | MS.gene71901:intron | 50.0% |
| !! | AGTGAAGCTTTGGAGCAGAC+TGG | - | chr8.3:19523793-19523812 | MS.gene71901:intron | 50.0% |
| !! | ATTGGACAAGGAGTGCCAGA+AGG | - | chr8.3:19523832-19523851 | MS.gene71901:intron | 50.0% |
| !! | TCCTAACATTAGGCTGGCCT+CGG | - | chr8.3:19524380-19524399 | MS.gene71901:intron | 50.0% |
| AAGGGTGAGGCCTTCTACAC+TGG | - | chr8.3:19525804-19525823 | MS.gene71901:intron | 55.0% | |
| ACACGGTATAGCTGCTGCAG+TGG | - | chr8.3:19525902-19525921 | MS.gene71901:intron | 55.0% | |
| AGGGTGAGGCCTTCTACACT+GGG | - | chr8.3:19525805-19525824 | MS.gene71901:intron | 55.0% | |
| AGTGTTCCCAGGTCACCAAG+TGG | + | chr8.3:19525771-19525790 | None:intergenic | 55.0% | |
| CGTTCACATCCAGTGTTCCC+AGG | + | chr8.3:19525782-19525801 | None:intergenic | 55.0% | |
| TCCGAGGCCAGCCTAATGTT+AGG | + | chr8.3:19524384-19524403 | None:intergenic | 55.0% | |
| TGATGGCACCACCATATGGG+AGG | - | chr8.3:19525974-19525993 | MS.gene71901:intron | 55.0% | |
| ! | ACTAGAGGTGCAGCAAGCAC+CGG | - | chr8.3:19525313-19525332 | MS.gene71901:intron | 55.0% |
| ! | ACTTGGTGACCTGGGAACAC+TGG | - | chr8.3:19525770-19525789 | MS.gene71901:intron | 55.0% |
| ! | CTTCAGCCACTTGGTGACCT+GGG | - | chr8.3:19525762-19525781 | MS.gene71901:intron | 55.0% |
| ! | GGTTGCTAGAAGTGCAGCAG+TGG | - | chr8.3:19525923-19525942 | MS.gene71901:intron | 55.0% |
| ! | TCTTCAGCCACTTGGTGACC+TGG | - | chr8.3:19525761-19525780 | MS.gene71901:intron | 55.0% |
| ! | TGTGTCACTCGCCTCCCATA+TGG | + | chr8.3:19525988-19526007 | None:intergenic | 55.0% |
| !! | AACTTCAGTGGGCTGTCACC+AGG | - | chr8.3:19525253-19525272 | MS.gene71901:intron | 55.0% |
| !! | ACTTCAGTGGGCTGTCACCA+GGG | - | chr8.3:19525254-19525273 | MS.gene71901:intron | 55.0% |
| !! | TGTCACCAGGGAAGCATTCC+TGG | - | chr8.3:19525266-19525285 | MS.gene71901:intron | 55.0% |
| GGGTGAGGCCTTCTACACTG+GGG | - | chr8.3:19525806-19525825 | MS.gene71901:intron | 60.0% | |
| GTCACTCGCCTCCCATATGG+TGG | + | chr8.3:19525985-19526004 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19522767 | 19526031 | 19522767 | ID=MS.gene71901 |
| chr8.3 | mRNA | 19522767 | 19526031 | 19522767 | ID=MS.gene71901.t1;Parent=MS.gene71901 |
| chr8.3 | exon | 19526008 | 19526031 | 19526008 | ID=MS.gene71901.t1.exon1;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19526008 | 19526031 | 19526008 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| chr8.3 | exon | 19525879 | 19525914 | 19525879 | ID=MS.gene71901.t1.exon2;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19525879 | 19525914 | 19525879 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| chr8.3 | exon | 19525673 | 19525745 | 19525673 | ID=MS.gene71901.t1.exon3;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19525673 | 19525745 | 19525673 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| chr8.3 | exon | 19524945 | 19525079 | 19524945 | ID=MS.gene71901.t1.exon4;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19524945 | 19525079 | 19524945 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| chr8.3 | exon | 19523423 | 19523646 | 19523423 | ID=MS.gene71901.t1.exon5;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19523423 | 19523646 | 19523423 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| chr8.3 | exon | 19522767 | 19523030 | 19522767 | ID=MS.gene71901.t1.exon6;Parent=MS.gene71901.t1 |
| chr8.3 | CDS | 19522767 | 19523030 | 19522767 | ID=cds.MS.gene71901.t1;Parent=MS.gene71901.t1 |
| Gene Sequence |
| Protein sequence |
