Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62862.t1 | XP_003608775.1 | 96.8 | 251 | 8 | 0 | 1 | 251 | 62 | 312 | 8.30E-133 | 483 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62862.t1 | Q9LD47 | 73.2 | 250 | 62 | 2 | 2 | 250 | 74 | 319 | 9.3e-101 | 367.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62862.t1 | G7JK60 | 96.8 | 251 | 8 | 0 | 1 | 251 | 62 | 312 | 6.0e-133 | 483.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03709 | MS.gene62862 | PPI |
| MS.gene78312 | MS.gene62862 | PPI |
| MS.gene29281 | MS.gene62862 | PPI |
| MS.gene066547 | MS.gene62862 | PPI |
| MS.gene62862 | MS.gene024631 | PPI |
| MS.gene62862 | MS.gene066545 | PPI |
| MS.gene22685 | MS.gene62862 | PPI |
| MS.gene049760 | MS.gene62862 | PPI |
| MS.gene09134 | MS.gene62862 | PPI |
| MS.gene62862 | MS.gene007746 | PPI |
| MS.gene024629 | MS.gene62862 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62862.t1 | MTR_4g101820 | 96.813 | 251 | 8 | 0 | 1 | 251 | 62 | 312 | 0.0 | 508 |
| MS.gene62862.t1 | MTR_7g114240 | 34.234 | 111 | 65 | 2 | 104 | 206 | 13 | 123 | 6.57e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62862.t1 | AT1G12520 | 73.200 | 250 | 62 | 2 | 2 | 250 | 74 | 319 | 3.53e-136 | 386 |
| MS.gene62862.t1 | AT1G12520 | 76.754 | 228 | 52 | 1 | 24 | 250 | 1 | 228 | 3.23e-131 | 370 |
| MS.gene62862.t1 | AT1G12520 | 74.863 | 183 | 45 | 1 | 69 | 250 | 1 | 183 | 3.90e-101 | 292 |
| MS.gene62862.t1 | AT2G28190 | 35.833 | 120 | 68 | 3 | 96 | 206 | 67 | 186 | 5.53e-13 | 66.6 |
| MS.gene62862.t1 | AT1G08830 | 31.818 | 110 | 67 | 2 | 105 | 206 | 14 | 123 | 3.77e-11 | 60.1 |
| MS.gene62862.t1 | AT1G08830 | 31.818 | 110 | 67 | 2 | 105 | 206 | 14 | 123 | 3.77e-11 | 60.1 |
Find 62 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAGTGGCTGATCTTAT+TGG | 0.237491 | 8.1:-21863287 | MS.gene62862:CDS |
| AATCAGGTTGTTAGGATTCT+TGG | 0.277482 | 8.1:-21865368 | MS.gene62862:CDS |
| TCTTGGTCTATTAATGAGTT+TGG | 0.315012 | 8.1:-21863825 | MS.gene62862:CDS |
| TGTCACCAGGGAAGCATTCT+TGG | 0.315612 | 8.1:-21863842 | MS.gene62862:CDS |
| AAGGGTGAGGCCTTCTACAC+TGG | 0.329684 | 8.1:-21863323 | MS.gene62862:CDS |
| ATTTGAGCAATCAGGTTGTT+AGG | 0.331503 | 8.1:-21865376 | MS.gene62862:CDS |
| TTCTTTGACCCCAGTGTAGA+AGG | 0.339109 | 8.1:+21863313 | None:intergenic |
| AATAAGCTGCAAACAATTCA+TGG | 0.366563 | 8.1:-21866022 | MS.gene62862:intron |
| TGACGGATTGAACACTTTAC+CGG | 0.379266 | 8.1:+21863776 | None:intergenic |
| GATGTTATAGACAGAGTATA+TGG | 0.386885 | 8.1:-21866083 | MS.gene62862:intron |
| TGAGAGTGGCTGATCTTATT+GGG | 0.397290 | 8.1:-21863286 | MS.gene62862:CDS |
| TCGCCTGGCTCAAGTAAGTA+TGG | 0.403626 | 8.1:-21863898 | MS.gene62862:CDS |
| GTACCTGAGAAGAGAGATTA+TGG | 0.408288 | 8.1:+21866354 | None:intergenic |
| AACTTCAGTGGGCTGTCACC+AGG | 0.418853 | 8.1:-21863855 | MS.gene62862:CDS |
| TGATGTGTTACCTGAGTTGC+TGG | 0.424399 | 8.1:-21866228 | MS.gene62862:intron |
| TCTTCAGCCACTTGGTGACC+TGG | 0.447517 | 8.1:-21863366 | MS.gene62862:intron |
| CGTTCACATCCAGTGTTCCC+AGG | 0.476668 | 8.1:+21863348 | None:intergenic |
| TGATTGGATCTTCAGCCACT+TGG | 0.478442 | 8.1:-21863374 | MS.gene62862:intron |
| GGACCATAATCTCTCTTCTC+AGG | 0.485297 | 8.1:-21866357 | MS.gene62862:intron |
| TGTCTCTGAATTCAAAGGTC+CGG | 0.504920 | 8.1:-21863937 | MS.gene62862:CDS |
| GTTCCATACTTACTTGAGCC+AGG | 0.507267 | 8.1:+21863895 | None:intergenic |
| TTAGTTCATCAGAACTTGCT+AGG | 0.511807 | 8.1:+21863110 | None:intergenic |
| TGTGTCACTCGCCTCCCATA+TGG | 0.514090 | 8.1:+21863142 | None:intergenic |
| ACTTGGTGACCTGGGAACAC+TGG | 0.521939 | 8.1:-21863357 | MS.gene62862:CDS |
| AGGAATCAAGAATGTGGAGG+TGG | 0.522472 | 8.1:-21865399 | MS.gene62862:CDS |
| GGAGGTGGATTTGAGCAATC+AGG | 0.531013 | 8.1:-21865384 | MS.gene62862:CDS |
| ATAGACCAAGAATGCTTCCC+TGG | 0.535955 | 8.1:+21863837 | None:intergenic |
| AGGGTGAGGCCTTCTACACT+GGG | 0.539540 | 8.1:-21863322 | MS.gene62862:CDS |
| CTTCAGCCACTTGGTGACCT+GGG | 0.540096 | 8.1:-21863365 | MS.gene62862:intron |
| AGTGAAGCTTTGGAGCAGAC+TGG | 0.542020 | 8.1:-21865323 | MS.gene62862:CDS |
| ACACTGGATGTGAACGAAAA+GGG | 0.549598 | 8.1:-21863341 | MS.gene62862:CDS |
| CATGTGATGGCACCACCATA+TGG | 0.553031 | 8.1:-21863157 | MS.gene62862:CDS |
| ATGTGATGGCACCACCATAT+GGG | 0.558693 | 8.1:-21863156 | MS.gene62862:CDS |
| CTGCTCCAAAGCTTCACTCA+TGG | 0.565126 | 8.1:+21865328 | None:intergenic |
| AACACTGGATGTGAACGAAA+AGG | 0.566311 | 8.1:-21863342 | MS.gene62862:CDS |
| AAACGAGGAAAACACTAAAG+AGG | 0.567123 | 8.1:-21863754 | MS.gene62862:intron |
| TACAGACTTCTTAATATCAG+CGG | 0.568744 | 8.1:-21863961 | MS.gene62862:intron |
| TTAAAACTAACCAGCAACTC+AGG | 0.568886 | 8.1:+21866218 | None:intergenic |
| ACTAGAGGTGCAGCAAGCAC+CGG | 0.584846 | 8.1:-21863795 | MS.gene62862:CDS |
| ACTTCAGTGGGCTGTCACCA+GGG | 0.586367 | 8.1:-21863854 | MS.gene62862:CDS |
| GAATTGAAGCAAACTTCAGT+GGG | 0.590735 | 8.1:-21863866 | MS.gene62862:CDS |
| GCGGCTGTCTCTGAATTCAA+AGG | 0.596170 | 8.1:-21863942 | MS.gene62862:CDS |
| AGAATTGAAGCAAACTTCAG+TGG | 0.596475 | 8.1:-21863867 | MS.gene62862:CDS |
| CTCAGGTAACACATCATGAT+CGG | 0.597257 | 8.1:+21866235 | None:intergenic |
| ACACGGTATAGCTGCTGCAG+TGG | 0.603121 | 8.1:-21863225 | MS.gene62862:CDS |
| TATAGGAATCAAGAATGTGG+AGG | 0.613868 | 8.1:-21865402 | MS.gene62862:intron |
| GGATGTGAACGAAAAGGGTG+AGG | 0.614241 | 8.1:-21863336 | MS.gene62862:CDS |
| ATTGGACAAGGAGTGCCAGA+AGG | 0.627026 | 8.1:-21865284 | MS.gene62862:intron |
| TAGGATTCTTGGTTCAACAC+CGG | 0.627780 | 8.1:-21865357 | MS.gene62862:CDS |
| GGTTGCTAGAAGTGCAGCAG+TGG | 0.630108 | 8.1:-21863204 | MS.gene62862:CDS |
| GTCACTCGCCTCCCATATGG+TGG | 0.633316 | 8.1:+21863145 | None:intergenic |
| AAAGCTCGATTAATTGGACA+AGG | 0.655932 | 8.1:-21865296 | MS.gene62862:CDS |
| ATGGTTGATATGAAATGCGA+AGG | 0.659694 | 8.1:-21866064 | MS.gene62862:CDS |
| GGTCAAAGAAAAGCTGAGAG+TGG | 0.664417 | 8.1:-21863300 | MS.gene62862:CDS |
| TGATGGCACCACCATATGGG+AGG | 0.673765 | 8.1:-21863153 | MS.gene62862:CDS |
| AGTGTTCAATCCGTCAAACG+AGG | 0.687984 | 8.1:-21863769 | MS.gene62862:CDS |
| GAGTTTGGTGATCTGACTAG+AGG | 0.700866 | 8.1:-21863810 | MS.gene62862:CDS |
| ATGCGAAGGCTGTGTTAATG+CGG | 0.708798 | 8.1:-21866050 | MS.gene62862:CDS |
| GTTGCTAGAAGTGCAGCAGT+GGG | 0.712487 | 8.1:-21863203 | MS.gene62862:CDS |
| ACTGAAGATAAATCAGAACA+CGG | 0.722342 | 8.1:-21863242 | MS.gene62862:CDS |
| AGTGTTCCCAGGTCACCAAG+TGG | 0.723488 | 8.1:+21863359 | None:intergenic |
| GGGTGAGGCCTTCTACACTG+GGG | 0.799147 | 8.1:-21863321 | MS.gene62862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAGAAAATAAAATATAAA+AGG | + | chr8.1:21863209-21863228 | None:intergenic | 10.0% |
| !! | GTTATTTATAAACATTAAAA+TGG | - | chr8.1:21865825-21865844 | MS.gene62862:intron | 10.0% |
| !! | AAACAGAAAAAAAATGAAAT+TGG | + | chr8.1:21863297-21863316 | None:intergenic | 15.0% |
| !! | AGAGGAATAATAAATAATTA+AGG | + | chr8.1:21863148-21863167 | None:intergenic | 15.0% |
| !! | ATAAAATATAAAAGGATTAG+AGG | + | chr8.1:21863201-21863220 | None:intergenic | 15.0% |
| !! | TCTGTTTATTTGTATATAAA+GGG | + | chr8.1:21864605-21864624 | None:intergenic | 15.0% |
| !! | TTATAAACATTAAAATGGAT+AGG | - | chr8.1:21865830-21865849 | MS.gene62862:intron | 15.0% |
| !! | TTATAAATAACATTTATACC+AGG | + | chr8.1:21865816-21865835 | None:intergenic | 15.0% |
| !! | TTCTGTTTATTTGTATATAA+AGG | + | chr8.1:21864606-21864625 | None:intergenic | 15.0% |
| !!! | AATAGTTGAAATTGATATTT+TGG | - | chr8.1:21865957-21865976 | MS.gene62862:intron | 15.0% |
| !!! | AATTCAATTAATTGTTTTCA+TGG | - | chr8.1:21865437-21865456 | MS.gene62862:intron | 15.0% |
| !!! | ATTTCATTTTTTTTCTGTTT+AGG | - | chr8.1:21863297-21863316 | MS.gene62862:CDS | 15.0% |
| !! | AATTAAGATTGAAATTAGAG+AGG | + | chr8.1:21863166-21863185 | None:intergenic | 20.0% |
| !! | ATAAAGCAAAAAAGAAAGAA+AGG | + | chr8.1:21864223-21864242 | None:intergenic | 20.0% |
| !! | ATTAAATTTAAGAATATCCG+AGG | + | chr8.1:21864767-21864786 | None:intergenic | 20.0% |
| !! | ATTCTATTATTTAACCCTAA+TGG | - | chr8.1:21864627-21864646 | MS.gene62862:intron | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | + | chr8.1:21864654-21864673 | None:intergenic | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | - | chr8.1:21864652-21864671 | MS.gene62862:intron | 20.0% |
| !! | CTGTTTATTTGTATATAAAG+GGG | + | chr8.1:21864604-21864623 | None:intergenic | 20.0% |
| !! | GCAACTAAATATATATTTAC+AGG | + | chr8.1:21865358-21865377 | None:intergenic | 20.0% |
| !! | TAATTTATTTGGATGACAAT+TGG | - | chr8.1:21864783-21864802 | MS.gene62862:intron | 20.0% |
| !! | TTCTATTATTTAACCCTAAT+GGG | - | chr8.1:21864628-21864647 | MS.gene62862:intron | 20.0% |
| !!! | AGCGTAAAAAAATTCTTTTA+AGG | - | chr8.1:21865783-21865802 | MS.gene62862:intron | 20.0% |
| !!! | ATATTGTTTTTGTTAGACAA+TGG | + | chr8.1:21865220-21865239 | None:intergenic | 20.0% |
| !!! | ATGAAACTTTTAATTCATGA+AGG | - | chr8.1:21865874-21865893 | MS.gene62862:intron | 20.0% |
| !!! | ATTAGTTTATTAACCTTTTC+TGG | - | chr8.1:21865985-21866004 | MS.gene62862:intron | 20.0% |
| !!! | CTATTTGCAATTTTTATGAT+AGG | - | chr8.1:21864251-21864270 | MS.gene62862:intron | 20.0% |
| ! | AAATATAAAAGGATTAGAGG+CGG | + | chr8.1:21863198-21863217 | None:intergenic | 25.0% |
| ! | AACAAGAGAATTAACACAAA+AGG | + | chr8.1:21864310-21864329 | None:intergenic | 25.0% |
| ! | ACAATTTCAAACACAACTTA+AGG | - | chr8.1:21866072-21866091 | MS.gene62862:CDS | 25.0% |
| ! | ATACTTTCAATGTTAATGAC+AGG | + | chr8.1:21865106-21865125 | None:intergenic | 25.0% |
| ! | CAAAATTCACCTATAAAAGT+AGG | + | chr8.1:21864280-21864299 | None:intergenic | 25.0% |
| ! | GATGGTAATTTAGGAAAATA+GGG | - | chr8.1:21864452-21864471 | MS.gene62862:intron | 25.0% |
| ! | TAAAAAACATCGAACTGAAT+TGG | - | chr8.1:21863848-21863867 | MS.gene62862:CDS | 25.0% |
| ! | TAATTAGTAGGTGGTTAATT+AGG | + | chr8.1:21864703-21864722 | None:intergenic | 25.0% |
| ! | TGACAATTGGAGTATAATAT+TGG | - | chr8.1:21864796-21864815 | MS.gene62862:intron | 25.0% |
| ! | TGTAAAGCAAAAGAAAGATT+CGG | + | chr8.1:21865500-21865519 | None:intergenic | 25.0% |
| ! | TTAAACTGTTTATCCAAACA+AGG | + | chr8.1:21863544-21863563 | None:intergenic | 25.0% |
| ! | TTATTAGTAAGTTGTCCATT+AGG | + | chr8.1:21864670-21864689 | None:intergenic | 25.0% |
| ! | TTCTTAATGATGTATCCAAA+TGG | - | chr8.1:21865910-21865929 | MS.gene62862:intron | 25.0% |
| !! | ACAGAATAAGTTTTCTGTTT+AGG | + | chr8.1:21864557-21864576 | None:intergenic | 25.0% |
| !! | CAGAATAAGTTTTCTGTTTA+GGG | + | chr8.1:21864556-21864575 | None:intergenic | 25.0% |
| !! | GCTAGATGATTTATCAATTT+TGG | - | chr8.1:21865328-21865347 | MS.gene62862:CDS | 25.0% |
| !! | TGATTTTGTATTACCAGAAA+AGG | + | chr8.1:21866001-21866020 | None:intergenic | 25.0% |
| !! | TTAATTGTTTTCATGGTTTC+AGG | - | chr8.1:21865444-21865463 | MS.gene62862:intron | 25.0% |
| !! | TTTTATAGGAATCAAGAATG+TGG | - | chr8.1:21864072-21864091 | MS.gene62862:intron | 25.0% |
| !! | TTTTGTGTTAATTCTCTTGT+TGG | - | chr8.1:21864309-21864328 | MS.gene62862:intron | 25.0% |
| !!! | AAAAACATTGAAAGTATTGC+TGG | - | chr8.1:21865137-21865156 | MS.gene62862:intron | 25.0% |
| !!! | AACATGTTTGATTGATAATG+TGG | + | chr8.1:21864994-21865013 | None:intergenic | 25.0% |
| !!! | CAGTTTAATTTGCATCTTAT+AGG | - | chr8.1:21863556-21863575 | MS.gene62862:intron | 25.0% |
| !!! | TCTATTTCATTCTAGCTTAT+TGG | - | chr8.1:21865186-21865205 | MS.gene62862:intron | 25.0% |
| !!! | TTATAGGTGAATTTTGAGTA+TGG | - | chr8.1:21864284-21864303 | MS.gene62862:intron | 25.0% |
| AAAAACAATATACCCATCAG+AGG | - | chr8.1:21865229-21865248 | MS.gene62862:intron | 30.0% | |
| AAATAAGCTGAAACAGCTTA+TGG | - | chr8.1:21863687-21863706 | MS.gene62862:intron | 30.0% | |
| AAATAATAAGAGGCCCATTA+GGG | + | chr8.1:21864644-21864663 | None:intergenic | 30.0% | |
| AACACAGATATGAAAATCTC+AGG | + | chr8.1:21864029-21864048 | None:intergenic | 30.0% | |
| AAGATATCTTGGAGAACTTA+TGG | - | chr8.1:21863664-21863683 | MS.gene62862:intron | 30.0% | |
| AAGCAGAAAATGGATCTATT+TGG | + | chr8.1:21863809-21863828 | None:intergenic | 30.0% | |
| AATAAGCTGCAAACAATTCA+TGG | - | chr8.1:21863455-21863474 | MS.gene62862:intron | 30.0% | |
| AATTGGAGTATAATATTGGC+TGG | - | chr8.1:21864800-21864819 | MS.gene62862:intron | 30.0% | |
| ACACAGATATGAAAATCTCA+GGG | + | chr8.1:21864028-21864047 | None:intergenic | 30.0% | |
| ACTGAAGATAAATCAGAACA+CGG | - | chr8.1:21866235-21866254 | MS.gene62862:CDS | 30.0% | |
| AGTAACGATAATAGTTGTAG+AGG | - | chr8.1:21864487-21864506 | MS.gene62862:intron | 30.0% | |
| ATCAAATCCATTCAACCATT+TGG | + | chr8.1:21865928-21865947 | None:intergenic | 30.0% | |
| ATTCAAAAACTGTTGAACCT+GGG | + | chr8.1:21865263-21865282 | None:intergenic | 30.0% | |
| ATTTCAAACACAACTTAAGG+AGG | - | chr8.1:21866075-21866094 | MS.gene62862:CDS | 30.0% | |
| GAAAATGGATCTATTTGGAT+TGG | + | chr8.1:21863804-21863823 | None:intergenic | 30.0% | |
| GACGGTTTATACTATTATGA+CGG | - | chr8.1:21865057-21865076 | MS.gene62862:intron | 30.0% | |
| GATGTTATAGACAGAGTATA+TGG | - | chr8.1:21863394-21863413 | MS.gene62862:intron | 30.0% | |
| GCATAAACAAGAAGAAGAAA+CGG | - | chr8.1:21864430-21864449 | MS.gene62862:intron | 30.0% | |
| GCTACATTATCATCAAACTT+AGG | - | chr8.1:21865161-21865180 | MS.gene62862:intron | 30.0% | |
| GGATGGTAATTTAGGAAAAT+AGG | - | chr8.1:21864451-21864470 | MS.gene62862:intron | 30.0% | |
| GGTAAAAAAGCTCGATTAAT+TGG | - | chr8.1:21864175-21864194 | MS.gene62862:intron | 30.0% | |
| GTAACGATAATAGTTGTAGA+GGG | - | chr8.1:21864488-21864507 | MS.gene62862:intron | 30.0% | |
| GTGTTTGGTAAGTTATACAT+TGG | + | chr8.1:21863984-21864003 | None:intergenic | 30.0% | |
| TAAAATCATATCGCATAAGC+AGG | + | chr8.1:21863512-21863531 | None:intergenic | 30.0% | |
| TAAATAATAAGAGGCCCATT+AGG | + | chr8.1:21864645-21864664 | None:intergenic | 30.0% | |
| TACAGACTTCTTAATATCAG+CGG | - | chr8.1:21865516-21865535 | MS.gene62862:intron | 30.0% | |
| TATTCAAAAACTGTTGAACC+TGG | + | chr8.1:21865264-21865283 | None:intergenic | 30.0% | |
| TCTTGGTCTATTAATGAGTT+TGG | - | chr8.1:21865652-21865671 | MS.gene62862:intron | 30.0% | |
| ! | CTATAAAAAAATGAGAGCAC+AGG | + | chr8.1:21864060-21864079 | None:intergenic | 30.0% |
| !! | CGTTTTAAGTAATTAGTAGG+TGG | + | chr8.1:21864712-21864731 | None:intergenic | 30.0% |
| !! | GATAGGAATCCTACTTTTAT+AGG | - | chr8.1:21864268-21864287 | MS.gene62862:intron | 30.0% |
| !! | GCTGTTTTCATAAGATATCT+TGG | - | chr8.1:21863653-21863672 | MS.gene62862:intron | 30.0% |
| !!! | CTGTGCTCTCATTTTTTTAT+AGG | - | chr8.1:21864058-21864077 | MS.gene62862:intron | 30.0% |
| AAAAACCATGAGTGAAGCTT+TGG | - | chr8.1:21864144-21864163 | MS.gene62862:intron | 35.0% | |
| AAAAAGCTCTGTACATGTGA+TGG | - | chr8.1:21866307-21866326 | MS.gene62862:intron | 35.0% | |
| AAACAAGAAGAAGAAACGGA+TGG | - | chr8.1:21864434-21864453 | MS.gene62862:intron | 35.0% | |
| AAACGAGGAAAACACTAAAG+AGG | - | chr8.1:21865723-21865742 | MS.gene62862:intron | 35.0% | |
| AAAGCTCGATTAATTGGACA+AGG | - | chr8.1:21864181-21864200 | MS.gene62862:intron | 35.0% | |
| AGAATTGAAGCAAACTTCAG+TGG | - | chr8.1:21865610-21865629 | MS.gene62862:intron | 35.0% | |
| AGTATGCTGAAAGCAGAAAA+TGG | + | chr8.1:21863819-21863838 | None:intergenic | 35.0% | |
| CAAACAAGTCTAATCGTGTT+TGG | + | chr8.1:21863999-21864018 | None:intergenic | 35.0% | |
| CGAACAACACCAAAAATTTC+CGG | + | chr8.1:21865562-21865581 | None:intergenic | 35.0% | |
| CTGGGAAAATGAATATTGTG+CGG | + | chr8.1:21864931-21864950 | None:intergenic | 35.0% | |
| GAAGAAACGGATGGTAATTT+AGG | - | chr8.1:21864443-21864462 | MS.gene62862:intron | 35.0% | |
| GAATTGAAGCAAACTTCAGT+GGG | - | chr8.1:21865611-21865630 | MS.gene62862:intron | 35.0% | |
| GACATACAAAAAAGGATGCT+GGG | + | chr8.1:21864949-21864968 | None:intergenic | 35.0% | |
| GATGTATCCAAATGGTTGAA+TGG | - | chr8.1:21865918-21865937 | MS.gene62862:intron | 35.0% | |
| TATAGGAATCAAGAATGTGG+AGG | - | chr8.1:21864075-21864094 | MS.gene62862:intron | 35.0% | |
| TATTGCCCTATCCTTCAATT+TGG | + | chr8.1:21864360-21864379 | None:intergenic | 35.0% | |
| TCACATTGGATCCTAACATT+AGG | - | chr8.1:21864737-21864756 | MS.gene62862:intron | 35.0% | |
| TGATTGATCACAAGATCCTT+TGG | + | chr8.1:21864399-21864418 | None:intergenic | 35.0% | |
| TTAAAACTAACCAGCAACTC+AGG | + | chr8.1:21863262-21863281 | None:intergenic | 35.0% | |
| TTCTCTGCGACATACAAAAA+AGG | + | chr8.1:21864957-21864976 | None:intergenic | 35.0% | |
| TTCTGCCAAATTGAAGGATA+GGG | - | chr8.1:21864352-21864371 | MS.gene62862:intron | 35.0% | |
| TTTCTGCCAAATTGAAGGAT+AGG | - | chr8.1:21864351-21864370 | MS.gene62862:intron | 35.0% | |
| TTTCTGCTTTCAGCATACTT+GGG | - | chr8.1:21863820-21863839 | MS.gene62862:CDS | 35.0% | |
| ! | AAAGCGACTATGATTTTGAG+GGG | - | chr8.1:21863910-21863929 | MS.gene62862:CDS | 35.0% |
| ! | AATCAGGTTGTTAGGATTCT+TGG | - | chr8.1:21864109-21864128 | MS.gene62862:intron | 35.0% |
| ! | ATGGTTGATATGAAATGCGA+AGG | - | chr8.1:21863413-21863432 | MS.gene62862:intron | 35.0% |
| ! | ATTTGAGCAATCAGGTTGTT+AGG | - | chr8.1:21864101-21864120 | MS.gene62862:intron | 35.0% |
| ! | CAAAGCGACTATGATTTTGA+GGG | - | chr8.1:21863909-21863928 | MS.gene62862:CDS | 35.0% |
| ! | TCAAAGCGACTATGATTTTG+AGG | - | chr8.1:21863908-21863927 | MS.gene62862:CDS | 35.0% |
| ! | TTAGTGTTTTCCTCGTTTGA+CGG | + | chr8.1:21865721-21865740 | None:intergenic | 35.0% |
| ! | TTCAAAGGTCCGGAAATTTT+TGG | - | chr8.1:21865550-21865569 | MS.gene62862:intron | 35.0% |
| ! | TTTTCTGCTTTCAGCATACT+TGG | - | chr8.1:21863819-21863838 | MS.gene62862:CDS | 35.0% |
| !! | GGGCGTTTTAAGTAATTAGT+AGG | + | chr8.1:21864715-21864734 | None:intergenic | 35.0% |
| !! | TTCTTTTAAGGATTGATGCC+TGG | - | chr8.1:21865795-21865814 | MS.gene62862:intron | 35.0% |
| !!! | GCGATATGATTTTAGCTACT+AGG | - | chr8.1:21863518-21863537 | MS.gene62862:intron | 35.0% |
| AACACTGGATGTGAACGAAA+AGG | - | chr8.1:21866135-21866154 | MS.gene62862:intron | 40.0% | |
| ACACTGGATGTGAACGAAAA+GGG | - | chr8.1:21866136-21866155 | MS.gene62862:intron | 40.0% | |
| ACTTAAGGAGGTTGCTTGAT+TGG | - | chr8.1:21866087-21866106 | MS.gene62862:intron | 40.0% | |
| AGAAAGAAAGGTGAACCTTC+TGG | + | chr8.1:21864211-21864230 | None:intergenic | 40.0% | |
| ATGTTAGGATCCAATGTGAG+AGG | + | chr8.1:21864736-21864755 | None:intergenic | 40.0% | |
| ATTGGATCCTAACATTAGGC+TGG | - | chr8.1:21864741-21864760 | MS.gene62862:intron | 40.0% | |
| CGACATACAAAAAAGGATGC+TGG | + | chr8.1:21864950-21864969 | None:intergenic | 40.0% | |
| CGCAATTTCTGCCAAATTGA+AGG | - | chr8.1:21864346-21864365 | MS.gene62862:intron | 40.0% | |
| CTCAGGTAACACATCATGAT+CGG | + | chr8.1:21863245-21863264 | None:intergenic | 40.0% | |
| CTGTCTAACTACTCACAACT+CGG | - | chr8.1:21864512-21864531 | MS.gene62862:intron | 40.0% | |
| GAAGGATAGGGCAATAGTTT+AGG | - | chr8.1:21864364-21864383 | MS.gene62862:intron | 40.0% | |
| GTACCTGAGAAGAGAGATTA+TGG | + | chr8.1:21863126-21863145 | None:intergenic | 40.0% | |
| GTTTAGGTGGTAGAAACCAA+AGG | - | chr8.1:21864380-21864399 | MS.gene62862:intron | 40.0% | |
| TAGGATTCTTGGTTCAACAC+CGG | - | chr8.1:21864120-21864139 | MS.gene62862:intron | 40.0% | |
| TGAGAGTGGCTGATCTTATT+GGG | - | chr8.1:21866191-21866210 | MS.gene62862:intron | 40.0% | |
| TGTCTCTGAATTCAAAGGTC+CGG | - | chr8.1:21865540-21865559 | MS.gene62862:intron | 40.0% | |
| TGTTAGGATCCAATGTGAGA+GGG | + | chr8.1:21864735-21864754 | None:intergenic | 40.0% | |
| ! | GCTTCACTCATGGTTTTTAC+CGG | + | chr8.1:21864142-21864161 | None:intergenic | 40.0% |
| ! | TTTTCTTCAGCGTCTAGTGA+CGG | - | chr8.1:21865039-21865058 | MS.gene62862:intron | 40.0% |
| !! | TGACGGATTGAACACTTTAC+CGG | + | chr8.1:21865704-21865723 | None:intergenic | 40.0% |
| !! | TTTAGCTACTAGGCCTTGTT+TGG | - | chr8.1:21863528-21863547 | MS.gene62862:intron | 40.0% |
| !!! | AATTTTTGGTGTTGTTCGCC+TGG | - | chr8.1:21865564-21865583 | MS.gene62862:intron | 40.0% |
| AGGAATCAAGAATGTGGAGG+TGG | - | chr8.1:21864078-21864097 | MS.gene62862:intron | 45.0% | |
| AGTGTTCAATCCGTCAAACG+AGG | - | chr8.1:21865708-21865727 | MS.gene62862:intron | 45.0% | |
| ATAGACCAAGAATGCTTCCC+TGG | + | chr8.1:21865643-21865662 | None:intergenic | 45.0% | |
| ATATCTGTTCACTGTGGCCA+CGG | - | chr8.1:21864827-21864846 | MS.gene62862:intron | 45.0% | |
| ATGCGAAGGCTGTGTTAATG+CGG | - | chr8.1:21863427-21863446 | MS.gene62862:intron | 45.0% | |
| ATGTGATGGCACCACCATAT+GGG | - | chr8.1:21866321-21866340 | MS.gene62862:intron | 45.0% | |
| CTGAGAGTGGCTGATCTTAT+TGG | - | chr8.1:21866190-21866209 | MS.gene62862:intron | 45.0% | |
| CTTAAAACGCCCTCTCACAT+TGG | - | chr8.1:21864723-21864742 | MS.gene62862:intron | 45.0% | |
| GGACCATAATCTCTCTTCTC+AGG | - | chr8.1:21863120-21863139 | MS.gene62862:CDS | 45.0% | |
| GGATAGGGCAATAGTTTAGG+TGG | - | chr8.1:21864367-21864386 | MS.gene62862:intron | 45.0% | |
| GGTCAAAGAAAAGCTGAGAG+TGG | - | chr8.1:21866177-21866196 | MS.gene62862:intron | 45.0% | |
| GGTGTGATATCTGTTCACTG+TGG | - | chr8.1:21864821-21864840 | MS.gene62862:intron | 45.0% | |
| GTTCCATACTTACTTGAGCC+AGG | + | chr8.1:21865585-21865604 | None:intergenic | 45.0% | |
| TGATGTGTTACCTGAGTTGC+TGG | - | chr8.1:21863249-21863268 | MS.gene62862:CDS | 45.0% | |
| TGATTGGATCTTCAGCCACT+TGG | - | chr8.1:21866103-21866122 | MS.gene62862:intron | 45.0% | |
| TTCTTTGACCCCAGTGTAGA+AGG | + | chr8.1:21866167-21866186 | None:intergenic | 45.0% | |
| ! | GAGTTTGGTGATCTGACTAG+AGG | - | chr8.1:21865667-21865686 | MS.gene62862:intron | 45.0% |
| ! | TTCTGTTTAGGGCCAGAGTA+GGG | + | chr8.1:21864545-21864564 | None:intergenic | 45.0% |
| ! | TTTCTGTTTAGGGCCAGAGT+AGG | + | chr8.1:21864546-21864565 | None:intergenic | 45.0% |
| !! | CATATAAAAATTAAAATAAT+TGG | + | chr8.1:21863950-21863969 | None:intergenic | 5.0% |
| !!! | ATTCTTAAATTTAATTTATT+TGG | - | chr8.1:21864772-21864791 | MS.gene62862:intron | 5.0% |
| CATGTGATGGCACCACCATA+TGG | - | chr8.1:21866320-21866339 | MS.gene62862:intron | 50.0% | |
| CTGCTCCAAAGCTTCACTCA+TGG | + | chr8.1:21864152-21864171 | None:intergenic | 50.0% | |
| GATATGCATCAGTGAGACCG+TGG | + | chr8.1:21864847-21864866 | None:intergenic | 50.0% | |
| GCGGCTGTCTCTGAATTCAA+AGG | - | chr8.1:21865535-21865554 | MS.gene62862:intron | 50.0% | |
| GGATGTGAACGAAAAGGGTG+AGG | - | chr8.1:21866141-21866160 | MS.gene62862:intron | 50.0% | |
| TCGCCTGGCTCAAGTAAGTA+TGG | - | chr8.1:21865579-21865598 | MS.gene62862:intron | 50.0% | |
| TGGGCGTAATAGCCTCTGAT+GGG | + | chr8.1:21865244-21865263 | None:intergenic | 50.0% | |
| ! | GGAGGTGGATTTGAGCAATC+AGG | - | chr8.1:21864093-21864112 | MS.gene62862:intron | 50.0% |
| ! | GTTGCTAGAAGTGCAGCAGT+GGG | - | chr8.1:21866274-21866293 | MS.gene62862:intron | 50.0% |
| ! | TGTGCGGAGATGCTGCTTAA+AGG | + | chr8.1:21864915-21864934 | None:intergenic | 50.0% |
| !! | AGTGAAGCTTTGGAGCAGAC+TGG | - | chr8.1:21864154-21864173 | MS.gene62862:intron | 50.0% |
| !! | ATTGGACAAGGAGTGCCAGA+AGG | - | chr8.1:21864193-21864212 | MS.gene62862:intron | 50.0% |
| !! | TCCTAACATTAGGCTGGCCT+CGG | - | chr8.1:21864747-21864766 | MS.gene62862:intron | 50.0% |
| !! | TGTCACCAGGGAAGCATTCT+TGG | - | chr8.1:21865635-21865654 | MS.gene62862:intron | 50.0% |
| AAGGGTGAGGCCTTCTACAC+TGG | - | chr8.1:21866154-21866173 | MS.gene62862:intron | 55.0% | |
| ACACGGTATAGCTGCTGCAG+TGG | - | chr8.1:21866252-21866271 | MS.gene62862:intron | 55.0% | |
| AGGGTGAGGCCTTCTACACT+GGG | - | chr8.1:21866155-21866174 | MS.gene62862:intron | 55.0% | |
| AGTGTTCCCAGGTCACCAAG+TGG | + | chr8.1:21866121-21866140 | None:intergenic | 55.0% | |
| CATCAGAGGCTATTACGCCC+AGG | - | chr8.1:21865243-21865262 | MS.gene62862:intron | 55.0% | |
| CGTTCACATCCAGTGTTCCC+AGG | + | chr8.1:21866132-21866151 | None:intergenic | 55.0% | |
| CTCGGAGAGTTACCCTACTC+TGG | - | chr8.1:21864530-21864549 | MS.gene62862:intron | 55.0% | |
| CTGGGCGTAATAGCCTCTGA+TGG | + | chr8.1:21865245-21865264 | None:intergenic | 55.0% | |
| TCCGAGGCCAGCCTAATGTT+AGG | + | chr8.1:21864751-21864770 | None:intergenic | 55.0% | |
| TGATGGCACCACCATATGGG+AGG | - | chr8.1:21866324-21866343 | MS.gene62862:intron | 55.0% | |
| ! | ACTAGAGGTGCAGCAAGCAC+CGG | - | chr8.1:21865682-21865701 | MS.gene62862:intron | 55.0% |
| ! | ACTTGGTGACCTGGGAACAC+TGG | - | chr8.1:21866120-21866139 | MS.gene62862:intron | 55.0% |
| ! | CTTCAGCCACTTGGTGACCT+GGG | - | chr8.1:21866112-21866131 | MS.gene62862:intron | 55.0% |
| ! | GGTTGCTAGAAGTGCAGCAG+TGG | - | chr8.1:21866273-21866292 | MS.gene62862:intron | 55.0% |
| ! | TCTTCAGCCACTTGGTGACC+TGG | - | chr8.1:21866111-21866130 | MS.gene62862:intron | 55.0% |
| ! | TGTGTCACTCGCCTCCCATA+TGG | + | chr8.1:21866338-21866357 | None:intergenic | 55.0% |
| !! | AACTTCAGTGGGCTGTCACC+AGG | - | chr8.1:21865622-21865641 | MS.gene62862:intron | 55.0% |
| !! | ACTTCAGTGGGCTGTCACCA+GGG | - | chr8.1:21865623-21865642 | MS.gene62862:intron | 55.0% |
| GGGTGAGGCCTTCTACACTG+GGG | - | chr8.1:21866156-21866175 | MS.gene62862:intron | 60.0% | |
| GTCACTCGCCTCCCATATGG+TGG | + | chr8.1:21866335-21866354 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21863118 | 21866381 | 21863118 | ID=MS.gene62862 |
| chr8.1 | mRNA | 21863118 | 21866381 | 21863118 | ID=MS.gene62862.t1;Parent=MS.gene62862 |
| chr8.1 | exon | 21866358 | 21866381 | 21866358 | ID=MS.gene62862.t1.exon1;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21866358 | 21866381 | 21866358 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| chr8.1 | exon | 21866229 | 21866264 | 21866229 | ID=MS.gene62862.t1.exon2;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21866229 | 21866264 | 21866229 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| chr8.1 | exon | 21866023 | 21866095 | 21866023 | ID=MS.gene62862.t1.exon3;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21866023 | 21866095 | 21866023 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| chr8.1 | exon | 21865285 | 21865419 | 21865285 | ID=MS.gene62862.t1.exon4;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21865285 | 21865419 | 21865285 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| chr8.1 | exon | 21863755 | 21863978 | 21863755 | ID=MS.gene62862.t1.exon5;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21863755 | 21863978 | 21863755 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| chr8.1 | exon | 21863118 | 21863381 | 21863118 | ID=MS.gene62862.t1.exon6;Parent=MS.gene62862.t1 |
| chr8.1 | CDS | 21863118 | 21863381 | 21863118 | ID=cds.MS.gene62862.t1;Parent=MS.gene62862.t1 |
| Gene Sequence |
| Protein sequence |
