Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011492.t1 | XP_003608775.1 | 96.4 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 9.10E-132 | 479.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011492.t1 | Q9LD47 | 72.8 | 250 | 63 | 2 | 2 | 250 | 74 | 319 | 1.0e-99 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011492.t1 | G7JK60 | 96.4 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 6.6e-132 | 479.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011492 | MS.gene049760 | PPI |
| MS.gene011492 | MS.gene09134 | PPI |
| MS.gene22685 | MS.gene011492 | PPI |
| MS.gene011492 | MS.gene066545 | PPI |
| MS.gene011492 | MS.gene78312 | PPI |
| MS.gene29281 | MS.gene011492 | PPI |
| MS.gene011492 | MS.gene007746 | PPI |
| MS.gene011492 | MS.gene024631 | PPI |
| MS.gene011492 | MS.gene03709 | PPI |
| MS.gene011492 | MS.gene066547 | PPI |
| MS.gene011492 | MS.gene024629 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011492.t1 | MTR_4g101820 | 96.414 | 251 | 9 | 0 | 1 | 251 | 62 | 312 | 0.0 | 506 |
| MS.gene011492.t1 | MTR_7g114240 | 33.333 | 111 | 66 | 2 | 104 | 206 | 13 | 123 | 4.51e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011492.t1 | AT1G12520 | 72.800 | 250 | 63 | 2 | 2 | 250 | 74 | 319 | 1.12e-134 | 382 |
| MS.gene011492.t1 | AT1G12520 | 76.316 | 228 | 53 | 1 | 24 | 250 | 1 | 228 | 8.93e-130 | 366 |
| MS.gene011492.t1 | AT1G12520 | 74.317 | 183 | 46 | 1 | 69 | 250 | 1 | 183 | 1.15e-99 | 288 |
| MS.gene011492.t1 | AT2G28190 | 35.000 | 120 | 69 | 3 | 96 | 206 | 67 | 186 | 5.72e-12 | 63.5 |
Find 62 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAGTGGCTGATCTTAT+TGG | 0.266810 | 8.2:-21597903 | MS.gene011492:CDS |
| AATCAGGTTGTTAGGATTCT+TGG | 0.277482 | 8.2:-21600001 | MS.gene011492:CDS |
| TGTCACCAGGGAAGCGTTCT+TGG | 0.295597 | 8.2:-21598475 | MS.gene011492:CDS |
| AAGGGTGAGGCCTTCTACAC+TGG | 0.329684 | 8.2:-21597939 | MS.gene011492:CDS |
| ATTTGAGCAATCAGGTTGTT+AGG | 0.331503 | 8.2:-21600009 | MS.gene011492:CDS |
| TTCTTTGACCCCAGTGTAGA+AGG | 0.339109 | 8.2:+21597929 | None:intergenic |
| TCTTGGTCTATTAATGAGTT+TGG | 0.340933 | 8.2:-21598458 | MS.gene011492:CDS |
| AATAAGCTGCAAACAATTCA+TGG | 0.366563 | 8.2:-21600653 | MS.gene011492:intron |
| GTACCTGAGAAGAGAGGTTT+TGG | 0.377703 | 8.2:+21600993 | None:intergenic |
| TGACGGATTGAACACTTTAC+CGG | 0.379266 | 8.2:+21598409 | None:intergenic |
| GATGTTATAGACAGAGTATA+TGG | 0.386885 | 8.2:-21600714 | MS.gene011492:intron |
| TCGCCTGGCTCAAGTAAGTA+TGG | 0.403626 | 8.2:-21598531 | MS.gene011492:CDS |
| AACTTCAGTGGGCTGTCACC+AGG | 0.418853 | 8.2:-21598488 | MS.gene011492:CDS |
| TGATGTGTTACCTGAGTTGC+TGG | 0.424399 | 8.2:-21600864 | MS.gene011492:intron |
| TCTTCAGCCACTTGGTGACC+TGG | 0.447517 | 8.2:-21597982 | MS.gene011492:intron |
| GGACCAAAACCTCTCTTCTC+AGG | 0.474658 | 8.2:-21600996 | MS.gene011492:intron |
| CGTTCACATCCAGTGTTCCC+AGG | 0.476668 | 8.2:+21597964 | None:intergenic |
| TGATTGGATCTTCAGCCACT+TGG | 0.478442 | 8.2:-21597990 | MS.gene011492:intron |
| TGTCTCTGAATTCAAAGGTC+CGG | 0.504920 | 8.2:-21598570 | MS.gene011492:CDS |
| GTTCCATACTTACTTGAGCC+AGG | 0.507267 | 8.2:+21598528 | None:intergenic |
| TTAGTTCATCAGAACTTGCT+AGG | 0.511807 | 8.2:+21597726 | None:intergenic |
| TGTGTCACTCGCCTCCCATA+TGG | 0.514090 | 8.2:+21597758 | None:intergenic |
| ACTTGGTGACCTGGGAACAC+TGG | 0.521939 | 8.2:-21597973 | MS.gene011492:CDS |
| AGGAATCAAGAATGTGGAGG+TGG | 0.522472 | 8.2:-21600032 | MS.gene011492:CDS |
| GGAGGTGGATTTGAGCAATC+AGG | 0.531013 | 8.2:-21600017 | MS.gene011492:CDS |
| AGGGTGAGGCCTTCTACACT+GGG | 0.539540 | 8.2:-21597938 | MS.gene011492:CDS |
| CTTCAGCCACTTGGTGACCT+GGG | 0.540096 | 8.2:-21597981 | MS.gene011492:intron |
| AGTGAAGCTTTGGAGCAGAC+TGG | 0.542020 | 8.2:-21599956 | MS.gene011492:CDS |
| ACACTGGATGTGAACGAAAA+GGG | 0.549598 | 8.2:-21597957 | MS.gene011492:CDS |
| CATGTGATGGCACCACCATA+TGG | 0.553031 | 8.2:-21597773 | MS.gene011492:CDS |
| ATAGACCAAGAACGCTTCCC+TGG | 0.553255 | 8.2:+21598470 | None:intergenic |
| ATGTGATGGCACCACCATAT+GGG | 0.558693 | 8.2:-21597772 | MS.gene011492:CDS |
| CTGCTCCAAAGCTTCACTCA+TGG | 0.565126 | 8.2:+21599961 | None:intergenic |
| AACACTGGATGTGAACGAAA+AGG | 0.566311 | 8.2:-21597958 | MS.gene011492:CDS |
| TACAGACTTCTTAATATCAG+CGG | 0.568744 | 8.2:-21598594 | MS.gene011492:intron |
| TTAAAACTAACCAGCAACTC+AGG | 0.568886 | 8.2:+21600854 | None:intergenic |
| ACTAGAGGTGCAGCAAGCAC+CGG | 0.584846 | 8.2:-21598428 | MS.gene011492:CDS |
| ACTTCAGTGGGCTGTCACCA+GGG | 0.586367 | 8.2:-21598487 | MS.gene011492:CDS |
| GAATTGAAGCAAACTTCAGT+GGG | 0.590735 | 8.2:-21598499 | MS.gene011492:CDS |
| GCGGCTGTCTCTGAATTCAA+AGG | 0.596170 | 8.2:-21598575 | MS.gene011492:CDS |
| AGAATTGAAGCAAACTTCAG+TGG | 0.596475 | 8.2:-21598500 | MS.gene011492:CDS |
| CTCAGGTAACACATCATGAT+CGG | 0.597257 | 8.2:+21600871 | None:intergenic |
| ACACGGTATAGCTGCTGCAG+TGG | 0.603121 | 8.2:-21597841 | MS.gene011492:CDS |
| TATAGGAATCAAGAATGTGG+AGG | 0.613868 | 8.2:-21600035 | MS.gene011492:intron |
| GGATGTGAACGAAAAGGGTG+AGG | 0.614241 | 8.2:-21597952 | MS.gene011492:CDS |
| ATTGGACAAGGAGTGCCAGA+AGG | 0.627026 | 8.2:-21599917 | MS.gene011492:intron |
| TAGGATTCTTGGTTCAACAC+CGG | 0.627780 | 8.2:-21599990 | MS.gene011492:CDS |
| AAACGAGGAAAACACTGAAG+AGG | 0.628576 | 8.2:-21598387 | MS.gene011492:intron |
| GGTTGCTAGAAGTGCAGCAG+TGG | 0.630108 | 8.2:-21597820 | MS.gene011492:CDS |
| GTCACTCGCCTCCCATATGG+TGG | 0.633316 | 8.2:+21597761 | None:intergenic |
| ATTAAGGTACCTGAGAAGAG+AGG | 0.639907 | 8.2:+21600987 | None:intergenic |
| AAAGCTCGATTAATTGGACA+AGG | 0.655932 | 8.2:-21599929 | MS.gene011492:CDS |
| ATGGTTGATATGAAATGCGA+AGG | 0.659694 | 8.2:-21600695 | MS.gene011492:CDS |
| GGTCAAAGAAAAGCTGAGAG+TGG | 0.664417 | 8.2:-21597916 | MS.gene011492:CDS |
| TGATGGCACCACCATATGGG+AGG | 0.673765 | 8.2:-21597769 | MS.gene011492:CDS |
| AGTGTTCAATCCGTCAAACG+AGG | 0.687984 | 8.2:-21598402 | MS.gene011492:CDS |
| GAGTTTGGTGATCTGACTAG+AGG | 0.700866 | 8.2:-21598443 | MS.gene011492:CDS |
| ATGCGAAGGCTGTGTTAATG+CGG | 0.708798 | 8.2:-21600681 | MS.gene011492:CDS |
| GTTGCTAGAAGTGCAGCAGT+GGG | 0.712487 | 8.2:-21597819 | MS.gene011492:CDS |
| ACTGAAGATAAATCAGAACA+CGG | 0.722342 | 8.2:-21597858 | MS.gene011492:CDS |
| AGTGTTCCCAGGTCACCAAG+TGG | 0.723488 | 8.2:+21597975 | None:intergenic |
| GGGTGAGGCCTTCTACACTG+GGG | 0.799147 | 8.2:-21597937 | MS.gene011492:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTTATAAACATTAAAA+TGG | - | chr8.2:21600447-21600466 | MS.gene011492:intron | 10.0% |
| !! | AAATAAAATAAAACGATTAG+AGG | + | chr8.2:21597817-21597836 | None:intergenic | 15.0% |
| !! | AGTTTATTAATTCTAAGTAA+GGG | - | chr8.2:21600612-21600631 | MS.gene011492:intron | 15.0% |
| !! | ATTATATTATTTAACCCTAA+CGG | - | chr8.2:21599249-21599268 | MS.gene011492:intron | 15.0% |
| !! | TAGTTTATTAATTCTAAGTA+AGG | - | chr8.2:21600611-21600630 | MS.gene011492:intron | 15.0% |
| !! | TCTGTTTATTTGTATATAAA+GGG | + | chr8.2:21599227-21599246 | None:intergenic | 15.0% |
| !! | TTATAAACATTAAAATGGAT+AGG | - | chr8.2:21600452-21600471 | MS.gene011492:intron | 15.0% |
| !! | TTCTGTTTATTTGTATATAA+AGG | + | chr8.2:21599228-21599247 | None:intergenic | 15.0% |
| !!! | AATTCAATTAATTGTTTTCA+TGG | - | chr8.2:21600059-21600078 | MS.gene011492:intron | 15.0% |
| !!! | AATTTCTTTTTTTTCTGTTT+AGG | - | chr8.2:21597921-21597940 | MS.gene011492:CDS | 15.0% |
| !!! | ATATTATTTTTGTTAGACAA+TGG | + | chr8.2:21599842-21599861 | None:intergenic | 15.0% |
| !! | ACAATTTCAAACATAACTTA+AGG | - | chr8.2:21600711-21600730 | MS.gene011492:intron | 20.0% |
| !! | AGAGGAATTATGAATAATTA+AGG | + | chr8.2:21597764-21597783 | None:intergenic | 20.0% |
| !! | ATAAAGCAAAAAAGAAAGAA+AGG | + | chr8.2:21598845-21598864 | None:intergenic | 20.0% |
| !! | ATTAAATTTAAGAATATCCG+AGG | + | chr8.2:21599389-21599408 | None:intergenic | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | + | chr8.2:21599276-21599295 | None:intergenic | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | - | chr8.2:21599274-21599293 | MS.gene011492:intron | 20.0% |
| !! | CTGTTTATTTGTATATAAAG+GGG | + | chr8.2:21599226-21599245 | None:intergenic | 20.0% |
| !! | TAATTTATTTGGATGACAAT+TGG | - | chr8.2:21599405-21599424 | MS.gene011492:intron | 20.0% |
| !! | TTATATTATTTAACCCTAAC+GGG | - | chr8.2:21599250-21599269 | MS.gene011492:intron | 20.0% |
| !!! | AATAGTTGAAATTGCTATTT+TGG | - | chr8.2:21600581-21600600 | MS.gene011492:intron | 20.0% |
| !!! | AGCGTAAAAAAATTCTTTTA+AGG | - | chr8.2:21600405-21600424 | MS.gene011492:intron | 20.0% |
| !!! | ATGAAACTTTTAATTCATGA+AGG | - | chr8.2:21600496-21600515 | MS.gene011492:intron | 20.0% |
| !!! | CTATTTGCAATTTTTATGAT+AGG | - | chr8.2:21598873-21598892 | MS.gene011492:intron | 20.0% |
| ! | AAAAATAATATACCCATCAG+AGG | - | chr8.2:21599851-21599870 | MS.gene011492:intron | 25.0% |
| ! | AACAAGAGAATTAACACAAA+AGG | + | chr8.2:21598932-21598951 | None:intergenic | 25.0% |
| ! | AATTAAGAGTGAAATTAGAG+AGG | + | chr8.2:21597782-21597801 | None:intergenic | 25.0% |
| ! | ATACTTTCAATGTTAATGAC+AGG | + | chr8.2:21599728-21599747 | None:intergenic | 25.0% |
| ! | ATTTCAAACATAACTTAAGG+AGG | - | chr8.2:21600714-21600733 | MS.gene011492:intron | 25.0% |
| ! | CAAAATTCACCTATAAAAGT+AGG | + | chr8.2:21598902-21598921 | None:intergenic | 25.0% |
| ! | CTTAATGATATGTATCCAAA+TGG | - | chr8.2:21600534-21600553 | MS.gene011492:intron | 25.0% |
| ! | GATGGTAATTTAGGAAAATA+GGG | - | chr8.2:21599074-21599093 | MS.gene011492:intron | 25.0% |
| ! | GCAACTAAACATATATTTAC+AGG | + | chr8.2:21599980-21599999 | None:intergenic | 25.0% |
| ! | TAAAAAACATCGAACTGAAT+TGG | - | chr8.2:21598470-21598489 | MS.gene011492:CDS | 25.0% |
| ! | TAAAATAAAACGATTAGAGG+CGG | + | chr8.2:21597814-21597833 | None:intergenic | 25.0% |
| ! | TAATTAGTAGGTGGTTAATT+AGG | + | chr8.2:21599325-21599344 | None:intergenic | 25.0% |
| ! | TGACAATTGGAGTATAATAT+TGG | - | chr8.2:21599418-21599437 | MS.gene011492:intron | 25.0% |
| ! | TGTAAAGCAAAAGAAAGATT+CGG | + | chr8.2:21600122-21600141 | None:intergenic | 25.0% |
| ! | TTAAACTGTTTATCCAAACA+AGG | + | chr8.2:21598168-21598187 | None:intergenic | 25.0% |
| ! | TTATTAGTAAGTTGTCCATT+AGG | + | chr8.2:21599292-21599311 | None:intergenic | 25.0% |
| !! | ACAGAATAAGTTTTCTGTTT+AGG | + | chr8.2:21599179-21599198 | None:intergenic | 25.0% |
| !! | CAGAATAAGTTTTCTGTTTA+GGG | + | chr8.2:21599178-21599197 | None:intergenic | 25.0% |
| !! | GCTAGATGATTTATCAATTT+TGG | - | chr8.2:21599950-21599969 | MS.gene011492:CDS | 25.0% |
| !! | TTAATTGTTTTCATGGTTTC+AGG | - | chr8.2:21600066-21600085 | MS.gene011492:intron | 25.0% |
| !! | TTTTATAGGAATCAAGAATG+TGG | - | chr8.2:21598694-21598713 | MS.gene011492:intron | 25.0% |
| !! | TTTTGTGTTAATTCTCTTGT+TGG | - | chr8.2:21598931-21598950 | MS.gene011492:intron | 25.0% |
| !!! | AAAAACATTGAAAGTATTGC+TGG | - | chr8.2:21599759-21599778 | MS.gene011492:intron | 25.0% |
| !!! | CAGTTTAATTTGCATCTTAT+AGG | - | chr8.2:21598180-21598199 | MS.gene011492:intron | 25.0% |
| !!! | TCTATTTCATTCTAGCTTAT+TGG | - | chr8.2:21599808-21599827 | MS.gene011492:intron | 25.0% |
| !!! | TTATAGGTGAATTTTGAGTA+TGG | - | chr8.2:21598906-21598925 | MS.gene011492:intron | 25.0% |
| AAATAAGCTGAAACAGCTTA+TGG | - | chr8.2:21598311-21598330 | MS.gene011492:intron | 30.0% | |
| AACACAGATATGAAAATCTC+AGG | + | chr8.2:21598651-21598670 | None:intergenic | 30.0% | |
| AAGATATCTTGGAGAACTTA+TGG | - | chr8.2:21598288-21598307 | MS.gene011492:intron | 30.0% | |
| AAGCAGAAAATGGATCTATT+TGG | + | chr8.2:21598431-21598450 | None:intergenic | 30.0% | |
| AATAAGCTGCAAACAATTCA+TGG | - | chr8.2:21598079-21598098 | MS.gene011492:intron | 30.0% | |
| AATTGGAGTATAATATTGGC+AGG | - | chr8.2:21599422-21599441 | MS.gene011492:intron | 30.0% | |
| ACACAGATATGAAAATCTCA+GGG | + | chr8.2:21598650-21598669 | None:intergenic | 30.0% | |
| ACTGAAGATAAATCAGAACA+CGG | - | chr8.2:21600874-21600893 | MS.gene011492:CDS | 30.0% | |
| AGTAACGATAATAGTTGTAG+AGG | - | chr8.2:21599109-21599128 | MS.gene011492:intron | 30.0% | |
| ATCAAATCCATTCAACCATT+TGG | + | chr8.2:21600552-21600571 | None:intergenic | 30.0% | |
| ATTCAAAAACTGTTGAACCT+GGG | + | chr8.2:21599885-21599904 | None:intergenic | 30.0% | |
| GAAAATGGATCTATTTGGAT+TGG | + | chr8.2:21598426-21598445 | None:intergenic | 30.0% | |
| GACGGTTTATACTATTATGA+CGG | - | chr8.2:21599679-21599698 | MS.gene011492:intron | 30.0% | |
| GATGTTATAGACAGAGTATA+TGG | - | chr8.2:21598018-21598037 | MS.gene011492:intron | 30.0% | |
| GCATAAACAAGAAGAAGAAA+CGG | - | chr8.2:21599052-21599071 | MS.gene011492:intron | 30.0% | |
| GCTACATTATCATCAAACTT+AGG | - | chr8.2:21599783-21599802 | MS.gene011492:intron | 30.0% | |
| GGATGGTAATTTAGGAAAAT+AGG | - | chr8.2:21599073-21599092 | MS.gene011492:intron | 30.0% | |
| GGTAAAAAAGCTCGATTAAT+TGG | - | chr8.2:21598797-21598816 | MS.gene011492:intron | 30.0% | |
| GTAACGATAATAGTTGTAGA+GGG | - | chr8.2:21599110-21599129 | MS.gene011492:intron | 30.0% | |
| GTGTTTGGTAAGTTATACAT+TGG | + | chr8.2:21598606-21598625 | None:intergenic | 30.0% | |
| TAAAATCATATCGCATAAGC+AGG | + | chr8.2:21598136-21598155 | None:intergenic | 30.0% | |
| TACAGACTTCTTAATATCAG+CGG | - | chr8.2:21600138-21600157 | MS.gene011492:intron | 30.0% | |
| TATGTATCCAAATGGTTGAA+TGG | - | chr8.2:21600542-21600561 | MS.gene011492:intron | 30.0% | |
| TATTCAAAAACTGTTGAACC+TGG | + | chr8.2:21599886-21599905 | None:intergenic | 30.0% | |
| TCTTGGTCTATTAATGAGTT+TGG | - | chr8.2:21600274-21600293 | MS.gene011492:intron | 30.0% | |
| TGTATATAAAGGGGAATTCT+TGG | + | chr8.2:21599217-21599236 | None:intergenic | 30.0% | |
| ! | CTATAAAAAAATGAGAGCAC+AGG | + | chr8.2:21598682-21598701 | None:intergenic | 30.0% |
| !! | AACATGTCTGATTGATAATG+TGG | + | chr8.2:21599616-21599635 | None:intergenic | 30.0% |
| !! | CGTTTTAAGTAATTAGTAGG+TGG | + | chr8.2:21599334-21599353 | None:intergenic | 30.0% |
| !! | GATAGGAATCCTACTTTTAT+AGG | - | chr8.2:21598890-21598909 | MS.gene011492:intron | 30.0% |
| !! | GCTGTTTTCATAAGATATCT+TGG | - | chr8.2:21598277-21598296 | MS.gene011492:intron | 30.0% |
| !! | TTCTTTTAAGGATTGATGAC+TGG | - | chr8.2:21600417-21600436 | MS.gene011492:intron | 30.0% |
| !!! | CTGTGCTCTCATTTTTTTAT+AGG | - | chr8.2:21598680-21598699 | MS.gene011492:intron | 30.0% |
| AAAAACCATGAGTGAAGCTT+TGG | - | chr8.2:21598766-21598785 | MS.gene011492:intron | 35.0% | |
| AAAAAGCTCTGTACATGTGA+TGG | - | chr8.2:21600946-21600965 | MS.gene011492:intron | 35.0% | |
| AAACAAGAAGAAGAAACGGA+TGG | - | chr8.2:21599056-21599075 | MS.gene011492:intron | 35.0% | |
| AAAGCTCGATTAATTGGACA+AGG | - | chr8.2:21598803-21598822 | MS.gene011492:intron | 35.0% | |
| AAATAATAAGAGGCCCGTTA+GGG | + | chr8.2:21599266-21599285 | None:intergenic | 35.0% | |
| AGAATTGAAGCAAACTTCAG+TGG | - | chr8.2:21600232-21600251 | MS.gene011492:intron | 35.0% | |
| AGTATGCTGAAAGCAGAAAA+TGG | + | chr8.2:21598441-21598460 | None:intergenic | 35.0% | |
| CGAACAACACCAAAAATTTC+CGG | + | chr8.2:21600184-21600203 | None:intergenic | 35.0% | |
| CTAAGTAAGGGTGATAAAGT+TGG | - | chr8.2:21600624-21600643 | MS.gene011492:intron | 35.0% | |
| CTGGGAAAATGAATATTGTG+CGG | + | chr8.2:21599553-21599572 | None:intergenic | 35.0% | |
| GAAGAAACGGATGGTAATTT+AGG | - | chr8.2:21599065-21599084 | MS.gene011492:intron | 35.0% | |
| GAATTGAAGCAAACTTCAGT+GGG | - | chr8.2:21600233-21600252 | MS.gene011492:intron | 35.0% | |
| TAAATAATAAGAGGCCCGTT+AGG | + | chr8.2:21599267-21599286 | None:intergenic | 35.0% | |
| TATAGGAATCAAGAATGTGG+AGG | - | chr8.2:21598697-21598716 | MS.gene011492:intron | 35.0% | |
| TATTGCCCTATCCTTCAATT+TGG | + | chr8.2:21598982-21599001 | None:intergenic | 35.0% | |
| TCACATTGGATCCTAACATT+AGG | - | chr8.2:21599359-21599378 | MS.gene011492:intron | 35.0% | |
| TGATTGATCACAAGATCCTT+TGG | + | chr8.2:21599021-21599040 | None:intergenic | 35.0% | |
| TTAAAACTAACCAGCAACTC+AGG | + | chr8.2:21597881-21597900 | None:intergenic | 35.0% | |
| TTCTGCCAAATTGAAGGATA+GGG | - | chr8.2:21598974-21598993 | MS.gene011492:intron | 35.0% | |
| TTTCTGCCAAATTGAAGGAT+AGG | - | chr8.2:21598973-21598992 | MS.gene011492:intron | 35.0% | |
| TTTCTGCTTTCAGCATACTT+GGG | - | chr8.2:21598442-21598461 | MS.gene011492:CDS | 35.0% | |
| ! | AAAGCGAGTATGATTTTGAG+GGG | - | chr8.2:21598532-21598551 | MS.gene011492:CDS | 35.0% |
| ! | AATCAGGTTGTTAGGATTCT+TGG | - | chr8.2:21598731-21598750 | MS.gene011492:intron | 35.0% |
| ! | ATGGTTGATATGAAATGCGA+AGG | - | chr8.2:21598037-21598056 | MS.gene011492:intron | 35.0% |
| ! | ATTTGAGCAATCAGGTTGTT+AGG | - | chr8.2:21598723-21598742 | MS.gene011492:intron | 35.0% |
| ! | CAAACAAGTCTTATCGTGTT+TGG | + | chr8.2:21598621-21598640 | None:intergenic | 35.0% |
| ! | CAAAGCGAGTATGATTTTGA+GGG | - | chr8.2:21598531-21598550 | MS.gene011492:CDS | 35.0% |
| ! | TCAAAGCGAGTATGATTTTG+AGG | - | chr8.2:21598530-21598549 | MS.gene011492:CDS | 35.0% |
| ! | TTCAAAGGTCCGGAAATTTT+TGG | - | chr8.2:21600172-21600191 | MS.gene011492:intron | 35.0% |
| ! | TTTTCTGCTTTCAGCATACT+TGG | - | chr8.2:21598441-21598460 | MS.gene011492:CDS | 35.0% |
| ! | TTTTCTTCAGCGTCTAATGA+CGG | - | chr8.2:21599661-21599680 | MS.gene011492:intron | 35.0% |
| !! | GGGCGTTTTAAGTAATTAGT+AGG | + | chr8.2:21599337-21599356 | None:intergenic | 35.0% |
| !!! | GCGATATGATTTTAGCTACT+AGG | - | chr8.2:21598142-21598161 | MS.gene011492:intron | 35.0% |
| AAACGAGGAAAACACTGAAG+AGG | - | chr8.2:21600345-21600364 | MS.gene011492:intron | 40.0% | |
| AACACTGGATGTGAACGAAA+AGG | - | chr8.2:21600774-21600793 | MS.gene011492:intron | 40.0% | |
| ACACTGGATGTGAACGAAAA+GGG | - | chr8.2:21600775-21600794 | MS.gene011492:intron | 40.0% | |
| ACTTAAGGAGGTTGCTTGAT+TGG | - | chr8.2:21600726-21600745 | MS.gene011492:intron | 40.0% | |
| AGAAAGAAAGGTGAACCTTC+TGG | + | chr8.2:21598833-21598852 | None:intergenic | 40.0% | |
| ATGTTAGGATCCAATGTGAG+AGG | + | chr8.2:21599358-21599377 | None:intergenic | 40.0% | |
| ATTGGATCCTAACATTAGGC+TGG | - | chr8.2:21599363-21599382 | MS.gene011492:intron | 40.0% | |
| CGCAATTTCTGCCAAATTGA+AGG | - | chr8.2:21598968-21598987 | MS.gene011492:intron | 40.0% | |
| CTCAGGTAACACATCATGAT+CGG | + | chr8.2:21597864-21597883 | None:intergenic | 40.0% | |
| CTGTCTAACTACTCACAACT+CGG | - | chr8.2:21599134-21599153 | MS.gene011492:intron | 40.0% | |
| GAAGGATAGGGCAATAGTTT+AGG | - | chr8.2:21598986-21599005 | MS.gene011492:intron | 40.0% | |
| GTTTAGGTGGTAGAAACCAA+AGG | - | chr8.2:21599002-21599021 | MS.gene011492:intron | 40.0% | |
| TAGGATTCTTGGTTCAACAC+CGG | - | chr8.2:21598742-21598761 | MS.gene011492:intron | 40.0% | |
| TGTCTCTGAATTCAAAGGTC+CGG | - | chr8.2:21600162-21600181 | MS.gene011492:intron | 40.0% | |
| TGTTAGGATCCAATGTGAGA+GGG | + | chr8.2:21599357-21599376 | None:intergenic | 40.0% | |
| TTCTTTGCGACATGCACAAA+AGG | + | chr8.2:21599579-21599598 | None:intergenic | 40.0% | |
| ! | ATTAAGGTACCTGAGAAGAG+AGG | + | chr8.2:21597748-21597767 | None:intergenic | 40.0% |
| ! | GCTTCACTCATGGTTTTTAC+CGG | + | chr8.2:21598764-21598783 | None:intergenic | 40.0% |
| ! | TCAGTGTTTTCCTCGTTTGA+CGG | + | chr8.2:21600343-21600362 | None:intergenic | 40.0% |
| !! | TGACGGATTGAACACTTTAC+CGG | + | chr8.2:21600326-21600345 | None:intergenic | 40.0% |
| !! | TTTAGCTACTAGGCCTTGTT+TGG | - | chr8.2:21598152-21598171 | MS.gene011492:intron | 40.0% |
| !!! | AATTTTTGGTGTTGTTCGCC+TGG | - | chr8.2:21600186-21600205 | MS.gene011492:intron | 40.0% |
| AGGAATCAAGAATGTGGAGG+TGG | - | chr8.2:21598700-21598719 | MS.gene011492:intron | 45.0% | |
| AGTGTTCAATCCGTCAAACG+AGG | - | chr8.2:21600330-21600349 | MS.gene011492:intron | 45.0% | |
| ATATCTGTTCACTGTGGCCA+CGG | - | chr8.2:21599449-21599468 | MS.gene011492:intron | 45.0% | |
| ATGCGAAGGCTGTGTTAATG+CGG | - | chr8.2:21598051-21598070 | MS.gene011492:intron | 45.0% | |
| ATGTGATGGCACCACCATAT+GGG | - | chr8.2:21600960-21600979 | MS.gene011492:intron | 45.0% | |
| CTGAGAGTGGCTGATCTTAT+TGG | - | chr8.2:21600829-21600848 | MS.gene011492:intron | 45.0% | |
| CTTAAAACGCCCTCTCACAT+TGG | - | chr8.2:21599345-21599364 | MS.gene011492:intron | 45.0% | |
| GACATGCACAAAAGGATGCT+GGG | + | chr8.2:21599571-21599590 | None:intergenic | 45.0% | |
| GGATAGGGCAATAGTTTAGG+TGG | - | chr8.2:21598989-21599008 | MS.gene011492:intron | 45.0% | |
| GGTCAAAGAAAAGCTGAGAG+TGG | - | chr8.2:21600816-21600835 | MS.gene011492:intron | 45.0% | |
| GGTGTGATATCTGTTCACTG+TGG | - | chr8.2:21599443-21599462 | MS.gene011492:intron | 45.0% | |
| GTTCCATACTTACTTGAGCC+AGG | + | chr8.2:21600207-21600226 | None:intergenic | 45.0% | |
| TGATGTGTTACCTGAGTTGC+TGG | - | chr8.2:21597868-21597887 | MS.gene011492:CDS | 45.0% | |
| TGATTGGATCTTCAGCCACT+TGG | - | chr8.2:21600742-21600761 | MS.gene011492:intron | 45.0% | |
| TTCTTTGACCCCAGTGTAGA+AGG | + | chr8.2:21600806-21600825 | None:intergenic | 45.0% | |
| ! | GAGTTTGGTGATCTGACTAG+AGG | - | chr8.2:21600289-21600308 | MS.gene011492:intron | 45.0% |
| ! | GTACCTGAGAAGAGAGGTTT+TGG | + | chr8.2:21597742-21597761 | None:intergenic | 45.0% |
| ! | TTCTGTTTAGGGCCAGAGTA+GGG | + | chr8.2:21599167-21599186 | None:intergenic | 45.0% |
| ! | TTTCTGTTTAGGGCCAGAGT+AGG | + | chr8.2:21599168-21599187 | None:intergenic | 45.0% |
| !! | CATATAAAAATTAAAATAAT+TGG | + | chr8.2:21598572-21598591 | None:intergenic | 5.0% |
| !!! | ATTCTTAAATTTAATTTATT+TGG | - | chr8.2:21599394-21599413 | MS.gene011492:intron | 5.0% |
| ATAGACCAAGAACGCTTCCC+TGG | + | chr8.2:21600265-21600284 | None:intergenic | 50.0% | |
| CATGTGATGGCACCACCATA+TGG | - | chr8.2:21600959-21600978 | MS.gene011492:intron | 50.0% | |
| CGACATGCACAAAAGGATGC+TGG | + | chr8.2:21599572-21599591 | None:intergenic | 50.0% | |
| CTGCTCCAAAGCTTCACTCA+TGG | + | chr8.2:21598774-21598793 | None:intergenic | 50.0% | |
| GATATGCATCAGTGAGACCG+TGG | + | chr8.2:21599469-21599488 | None:intergenic | 50.0% | |
| GCGGCTGTCTCTGAATTCAA+AGG | - | chr8.2:21600157-21600176 | MS.gene011492:intron | 50.0% | |
| GGACCAAAACCTCTCTTCTC+AGG | - | chr8.2:21597736-21597755 | MS.gene011492:CDS | 50.0% | |
| GGATGTGAACGAAAAGGGTG+AGG | - | chr8.2:21600780-21600799 | MS.gene011492:intron | 50.0% | |
| TCGCCTGGCTCAAGTAAGTA+TGG | - | chr8.2:21600201-21600220 | MS.gene011492:intron | 50.0% | |
| TGGGCGTAATAGCCTCTGAT+GGG | + | chr8.2:21599866-21599885 | None:intergenic | 50.0% | |
| ! | GGAGGTGGATTTGAGCAATC+AGG | - | chr8.2:21598715-21598734 | MS.gene011492:intron | 50.0% |
| ! | GTTGCTAGAAGTGCAGCAGT+GGG | - | chr8.2:21600913-21600932 | MS.gene011492:intron | 50.0% |
| ! | TGTGCGGAGATGCTGCTTAA+AGG | + | chr8.2:21599537-21599556 | None:intergenic | 50.0% |
| !! | AGTGAAGCTTTGGAGCAGAC+TGG | - | chr8.2:21598776-21598795 | MS.gene011492:intron | 50.0% |
| !! | ATTGGACAAGGAGTGCCAGA+AGG | - | chr8.2:21598815-21598834 | MS.gene011492:intron | 50.0% |
| !! | TCCTAACATTAGGCTGGCCT+CGG | - | chr8.2:21599369-21599388 | MS.gene011492:intron | 50.0% |
| AAGGGTGAGGCCTTCTACAC+TGG | - | chr8.2:21600793-21600812 | MS.gene011492:intron | 55.0% | |
| ACACGGTATAGCTGCTGCAG+TGG | - | chr8.2:21600891-21600910 | MS.gene011492:intron | 55.0% | |
| AGGGTGAGGCCTTCTACACT+GGG | - | chr8.2:21600794-21600813 | MS.gene011492:intron | 55.0% | |
| AGTGTTCCCAGGTCACCAAG+TGG | + | chr8.2:21600760-21600779 | None:intergenic | 55.0% | |
| CATCAGAGGCTATTACGCCC+AGG | - | chr8.2:21599865-21599884 | MS.gene011492:intron | 55.0% | |
| CGTTCACATCCAGTGTTCCC+AGG | + | chr8.2:21600771-21600790 | None:intergenic | 55.0% | |
| CTCGGAGAGTTACCCTACTC+TGG | - | chr8.2:21599152-21599171 | MS.gene011492:intron | 55.0% | |
| CTGGGCGTAATAGCCTCTGA+TGG | + | chr8.2:21599867-21599886 | None:intergenic | 55.0% | |
| TCCGAGGCCAGCCTAATGTT+AGG | + | chr8.2:21599373-21599392 | None:intergenic | 55.0% | |
| TGATGGCACCACCATATGGG+AGG | - | chr8.2:21600963-21600982 | MS.gene011492:intron | 55.0% | |
| ! | ACTAGAGGTGCAGCAAGCAC+CGG | - | chr8.2:21600304-21600323 | MS.gene011492:intron | 55.0% |
| ! | ACTTGGTGACCTGGGAACAC+TGG | - | chr8.2:21600759-21600778 | MS.gene011492:intron | 55.0% |
| ! | CTTCAGCCACTTGGTGACCT+GGG | - | chr8.2:21600751-21600770 | MS.gene011492:intron | 55.0% |
| ! | GGTTGCTAGAAGTGCAGCAG+TGG | - | chr8.2:21600912-21600931 | MS.gene011492:intron | 55.0% |
| ! | TCTTCAGCCACTTGGTGACC+TGG | - | chr8.2:21600750-21600769 | MS.gene011492:intron | 55.0% |
| ! | TGTGTCACTCGCCTCCCATA+TGG | + | chr8.2:21600977-21600996 | None:intergenic | 55.0% |
| !! | AACTTCAGTGGGCTGTCACC+AGG | - | chr8.2:21600244-21600263 | MS.gene011492:intron | 55.0% |
| !! | ACTTCAGTGGGCTGTCACCA+GGG | - | chr8.2:21600245-21600264 | MS.gene011492:intron | 55.0% |
| !! | TGTCACCAGGGAAGCGTTCT+TGG | - | chr8.2:21600257-21600276 | MS.gene011492:intron | 55.0% |
| GGGTGAGGCCTTCTACACTG+GGG | - | chr8.2:21600795-21600814 | MS.gene011492:intron | 60.0% | |
| GTCACTCGCCTCCCATATGG+TGG | + | chr8.2:21600974-21600993 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21597734 | 21601020 | 21597734 | ID=MS.gene011492 |
| chr8.2 | mRNA | 21597734 | 21601020 | 21597734 | ID=MS.gene011492.t1;Parent=MS.gene011492 |
| chr8.2 | exon | 21600997 | 21601020 | 21600997 | ID=MS.gene011492.t1.exon1;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21600997 | 21601020 | 21600997 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| chr8.2 | exon | 21600865 | 21600900 | 21600865 | ID=MS.gene011492.t1.exon2;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21600865 | 21600900 | 21600865 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| chr8.2 | exon | 21600654 | 21600726 | 21600654 | ID=MS.gene011492.t1.exon3;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21600654 | 21600726 | 21600654 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| chr8.2 | exon | 21599918 | 21600052 | 21599918 | ID=MS.gene011492.t1.exon4;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21599918 | 21600052 | 21599918 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| chr8.2 | exon | 21598388 | 21598611 | 21598388 | ID=MS.gene011492.t1.exon5;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21598388 | 21598611 | 21598388 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| chr8.2 | exon | 21597734 | 21597997 | 21597734 | ID=MS.gene011492.t1.exon6;Parent=MS.gene011492.t1 |
| chr8.2 | CDS | 21597734 | 21597997 | 21597734 | ID=cds.MS.gene011492.t1;Parent=MS.gene011492.t1 |
| Gene Sequence |
| Protein sequence |
