Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064366.t1 | XP_013459848.1 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.50E-117 | 432.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064366.t1 | O94903 | 47.1 | 225 | 107 | 6 | 7 | 220 | 9 | 232 | 9.3e-44 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064366.t1 | A0A072UVQ6 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.1e-117 | 432.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene064366 | 0.803908 | 2.79E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene064366 | 0.874402 | 6.95E-68 | -1.69E-46 |
| MS.gene049217 | MS.gene064366 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene064366 | 0.872175 | 3.89E-67 | -1.69E-46 |
| MS.gene049232 | MS.gene064366 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene064366 | 0.883799 | 3.30E-71 | -1.69E-46 |
| MS.gene049320 | MS.gene064366 | 0.861811 | 7.89E-64 | -1.69E-46 |
| MS.gene049609 | MS.gene064366 | 0.854571 | 1.13E-61 | -1.69E-46 |
| MS.gene049627 | MS.gene064366 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene064366 | 0.849137 | 3.92E-60 | -1.69E-46 |
| MS.gene049805 | MS.gene064366 | 0.823978 | 1.03E-53 | -1.69E-46 |
| MS.gene049865 | MS.gene064366 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene064366 | 0.856292 | 3.55E-62 | -1.69E-46 |
| MS.gene050163 | MS.gene064366 | 0.842351 | 2.73E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene064366 | 0.84735 | 1.22E-59 | -1.69E-46 |
| MS.gene050170 | MS.gene064366 | 0.857659 | 1.40E-62 | -1.69E-46 |
| MS.gene050323 | MS.gene064366 | 0.849237 | 3.68E-60 | -1.69E-46 |
| MS.gene050333 | MS.gene064366 | 0.860455 | 2.04E-63 | -1.69E-46 |
| MS.gene050444 | MS.gene064366 | 0.839058 | 1.99E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene064366 | 0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene064366 | 0.875705 | 2.50E-68 | -1.69E-46 |
| MS.gene050518 | MS.gene064366 | 0.861668 | 8.73E-64 | -1.69E-46 |
| MS.gene050538 | MS.gene064366 | 0.850568 | 1.56E-60 | -1.69E-46 |
| MS.gene050577 | MS.gene064366 | 0.846526 | 2.05E-59 | -1.69E-46 |
| MS.gene050593 | MS.gene064366 | 0.816897 | 4.36E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene064366 | 0.874325 | 7.38E-68 | -1.69E-46 |
| MS.gene050675 | MS.gene064366 | 0.837578 | 4.79E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene064366 | 0.849505 | 3.10E-60 | -1.69E-46 |
| MS.gene050747 | MS.gene064366 | 0.858869 | 6.13E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene064366 | 0.875213 | 3.68E-68 | -1.69E-46 |
| MS.gene05080 | MS.gene064366 | 0.859055 | 5.39E-63 | -1.69E-46 |
| MS.gene05081 | MS.gene064366 | 0.855637 | 5.52E-62 | -1.69E-46 |
| MS.gene050868 | MS.gene064366 | 0.867897 | 9.75E-66 | -1.69E-46 |
| MS.gene050871 | MS.gene064366 | 0.866197 | 3.40E-65 | -1.69E-46 |
| MS.gene050876 | MS.gene064366 | 0.84048 | 8.48E-58 | -1.69E-46 |
| MS.gene050904 | MS.gene064366 | 0.853863 | 1.80E-61 | -1.69E-46 |
| MS.gene050950 | MS.gene064366 | 0.862558 | 4.65E-64 | -1.69E-46 |
| MS.gene050986 | MS.gene064366 | 0.832589 | 8.67E-56 | -1.69E-46 |
| MS.gene05100 | MS.gene064366 | 0.806527 | 7.88E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene064366 | 0.801185 | 1.01E-48 | -1.69E-46 |
| MS.gene051228 | MS.gene064366 | 0.813314 | 2.73E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene064366 | 0.818689 | 1.72E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene064366 | 0.858903 | 5.98E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene064366 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene064366 | 0.806801 | 6.90E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene064366 | 0.833362 | 5.57E-56 | -1.69E-46 |
| MS.gene051651 | MS.gene064366 | -0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene051666 | MS.gene064366 | 0.834786 | 2.45E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene064366 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene064366 | 0.841752 | 3.93E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene064366 | 0.852665 | 3.98E-61 | -1.69E-46 |
| MS.gene051858 | MS.gene064366 | 0.832403 | 9.64E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene064366 | 0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene064366 | 0.824229 | 9.04E-54 | -1.69E-46 |
| MS.gene052129 | MS.gene064366 | -0.809639 | 1.71E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene064366 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene064366 | 0.841602 | 4.30E-58 | -1.69E-46 |
| MS.gene052482 | MS.gene064366 | 0.828954 | 6.74E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene064366 | 0.836125 | 1.12E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene064366 | 0.826966 | 2.03E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene064366 | 0.821378 | 4.17E-53 | -1.69E-46 |
| MS.gene052605 | MS.gene064366 | 0.820225 | 7.68E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene064366 | 0.834462 | 2.96E-56 | -1.69E-46 |
| MS.gene052822 | MS.gene064366 | 0.835701 | 1.44E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene064366 | 0.81564 | 8.34E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene064366 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene064366 | 0.877412 | 6.42E-69 | -1.69E-46 |
| MS.gene052872 | MS.gene064366 | 0.885697 | 6.50E-72 | -1.69E-46 |
| MS.gene052916 | MS.gene064366 | 0.811481 | 6.85E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene064366 | 0.838073 | 3.57E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene064366 | 0.825805 | 3.84E-54 | -1.69E-46 |
| MS.gene053107 | MS.gene064366 | 0.806204 | 9.22E-50 | -1.69E-46 |
| MS.gene053117 | MS.gene064366 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene064366 | 0.825917 | 3.61E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene064366 | 0.841669 | 4.13E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene064366 | 0.85373 | 1.97E-61 | -1.69E-46 |
| MS.gene053284 | MS.gene064366 | 0.817551 | 3.11E-52 | -1.69E-46 |
| MS.gene053285 | MS.gene064366 | 0.811565 | 6.57E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene064366 | 0.853182 | 2.83E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene064366 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene064366 | -0.802077 | 6.66E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene064366 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene064366 | 0.900654 | 5.90E-78 | -1.69E-46 |
| MS.gene053480 | MS.gene064366 | 0.838605 | 2.60E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene064366 | 0.842222 | 2.95E-58 | -1.69E-46 |
| MS.gene053626 | MS.gene064366 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene064366 | 0.840564 | 8.06E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene064366 | 0.891021 | 5.81E-74 | -1.69E-46 |
| MS.gene053916 | MS.gene064366 | 0.853744 | 1.95E-61 | -1.69E-46 |
| MS.gene054374 | MS.gene064366 | 0.817525 | 3.15E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene064366 | 0.865544 | 5.47E-65 | -1.69E-46 |
| MS.gene054595 | MS.gene064366 | 0.830477 | 2.87E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene064366 | 0.869835 | 2.30E-66 | -1.69E-46 |
| MS.gene054642 | MS.gene064366 | 0.865869 | 4.32E-65 | -1.69E-46 |
| MS.gene054706 | MS.gene064366 | -0.81606 | 6.72E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene064366 | 0.833281 | 5.84E-56 | -1.69E-46 |
| MS.gene05494 | MS.gene064366 | 0.855397 | 6.48E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene064366 | 0.856246 | 3.66E-62 | -1.69E-46 |
| MS.gene05505 | MS.gene064366 | 0.837305 | 5.62E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene064366 | 0.85341 | 2.43E-61 | -1.69E-46 |
| MS.gene055224 | MS.gene064366 | 0.872583 | 2.84E-67 | -1.69E-46 |
| MS.gene055289 | MS.gene064366 | 0.825524 | 4.47E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene064366 | 0.859634 | 3.61E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene064366 | 0.882313 | 1.16E-70 | -1.69E-46 |
| MS.gene055577 | MS.gene064366 | 0.887042 | 2.02E-72 | -1.69E-46 |
| MS.gene055638 | MS.gene064366 | 0.812391 | 4.34E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene064366 | 0.820563 | 6.42E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene064366 | 0.879292 | 1.40E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene064366 | 0.872407 | 3.26E-67 | -1.69E-46 |
| MS.gene055751 | MS.gene064366 | 0.879479 | 1.21E-69 | -1.69E-46 |
| MS.gene05589 | MS.gene064366 | 0.856071 | 4.12E-62 | -1.69E-46 |
| MS.gene05592 | MS.gene064366 | 0.841706 | 4.04E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene064366 | 0.855722 | 5.21E-62 | -1.69E-46 |
| MS.gene056374 | MS.gene064366 | 0.806097 | 9.71E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene064366 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene056409 | MS.gene064366 | 0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene056446 | MS.gene064366 | 0.82813 | 1.07E-54 | -1.69E-46 |
| MS.gene056449 | MS.gene064366 | 0.826635 | 2.44E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene064366 | 0.859436 | 4.14E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene064366 | 0.850525 | 1.61E-60 | -1.69E-46 |
| MS.gene056610 | MS.gene064366 | 0.832949 | 7.06E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene064366 | 0.859343 | 4.42E-63 | -1.69E-46 |
| MS.gene056692 | MS.gene064366 | 0.877048 | 8.59E-69 | -1.69E-46 |
| MS.gene056897 | MS.gene064366 | 0.809459 | 1.87E-50 | -1.69E-46 |
| MS.gene056898 | MS.gene064366 | 0.857683 | 1.38E-62 | -1.69E-46 |
| MS.gene056903 | MS.gene064366 | 0.801073 | 1.07E-48 | -1.69E-46 |
| MS.gene056947 | MS.gene064366 | 0.818617 | 1.78E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene064366 | 0.840008 | 1.13E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene064366 | 0.807408 | 5.13E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene064366 | 0.833617 | 4.81E-56 | -1.69E-46 |
| MS.gene057332 | MS.gene064366 | 0.834158 | 3.52E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene064366 | 0.83445 | 2.98E-56 | -1.69E-46 |
| MS.gene057658 | MS.gene064366 | 0.842348 | 2.73E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene064366 | 0.852484 | 4.48E-61 | -1.69E-46 |
| MS.gene057857 | MS.gene064366 | 0.808648 | 2.79E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene064366 | 0.825353 | 4.91E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene064366 | 0.805273 | 1.45E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene064366 | 0.857014 | 2.18E-62 | -1.69E-46 |
| MS.gene058323 | MS.gene064366 | 0.831932 | 1.26E-55 | -1.69E-46 |
| MS.gene058335 | MS.gene064366 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene064366 | 0.851934 | 6.42E-61 | -1.69E-46 |
| MS.gene05837 | MS.gene064366 | 0.900699 | 5.64E-78 | -1.69E-46 |
| MS.gene058419 | MS.gene064366 | 0.875988 | 2.00E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene064366 | 0.863516 | 2.35E-64 | -1.69E-46 |
| MS.gene058723 | MS.gene064366 | 0.822847 | 1.90E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene064366 | 0.890612 | 8.41E-74 | -1.69E-46 |
| MS.gene058838 | MS.gene064366 | 0.861867 | 7.59E-64 | -1.69E-46 |
| MS.gene059022 | MS.gene064366 | 0.86105 | 1.35E-63 | -1.69E-46 |
| MS.gene059023 | MS.gene064366 | 0.913544 | 5.44E-84 | -1.69E-46 |
| MS.gene059029 | MS.gene064366 | 0.814483 | 1.51E-51 | -1.69E-46 |
| MS.gene059079 | MS.gene064366 | 0.826777 | 2.25E-54 | -1.69E-46 |
| MS.gene05913 | MS.gene064366 | 0.823613 | 1.26E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene064366 | 0.834138 | 3.56E-56 | -1.69E-46 |
| MS.gene059305 | MS.gene064366 | 0.809899 | 1.51E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene064366 | 0.83994 | 1.17E-57 | -1.69E-46 |
| MS.gene059667 | MS.gene064366 | 0.822151 | 2.76E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene064366 | 0.873299 | 1.64E-67 | -1.69E-46 |
| MS.gene059718 | MS.gene064366 | 0.864957 | 8.36E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene064366 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene059801 | MS.gene064366 | 0.836407 | 9.53E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene064366 | 0.832561 | 8.81E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene064366 | 0.821459 | 3.99E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene064366 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene064366 | 0.831324 | 1.78E-55 | -1.69E-46 |
| MS.gene06027 | MS.gene064366 | 0.811852 | 5.69E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene064366 | 0.834529 | 2.84E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene064366 | 0.864336 | 1.31E-64 | -1.69E-46 |
| MS.gene060778 | MS.gene064366 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene064366 | 0.87409 | 8.86E-68 | -1.69E-46 |
| MS.gene060835 | MS.gene064366 | 0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene064366 | 0.893187 | 7.94E-75 | -1.69E-46 |
| MS.gene060982 | MS.gene064366 | 0.866511 | 2.70E-65 | -1.69E-46 |
| MS.gene061150 | MS.gene064366 | 0.876746 | 1.09E-68 | -1.69E-46 |
| MS.gene061200 | MS.gene064366 | 0.801756 | 7.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002999 | MS.gene064366 | PPI |
| MS.gene00778 | MS.gene064366 | PPI |
| MS.gene02348 | MS.gene064366 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064366.t1 | MTR_3g053230 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.19e-165 | 456 |
| MS.gene064366.t1 | MTR_2g024060 | 65.000 | 220 | 75 | 1 | 1 | 220 | 1 | 218 | 1.39e-106 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064366.t1 | AT4G26860 | 74.545 | 220 | 55 | 1 | 1 | 220 | 1 | 219 | 1.81e-123 | 350 |
| MS.gene064366.t1 | AT4G26860 | 71.304 | 230 | 55 | 2 | 1 | 220 | 1 | 229 | 3.99e-120 | 342 |
| MS.gene064366.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 6 | 220 | 16 | 232 | 6.46e-115 | 328 |
| MS.gene064366.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 6 | 220 | 16 | 232 | 7.19e-115 | 328 |
Find 72 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAACCATGGCCAAATT+TGG | 0.192964 | 3.1:+40408686 | None:intergenic |
| CATGGAAATGGGTTTGGTTT+TGG | 0.200720 | 3.1:+40410196 | None:intergenic |
| TGCAGGCGGAGTTCCAAATT+TGG | 0.235525 | 3.1:-40408699 | MS.gene064366:intron |
| GAGCTTTCTCAACGATTTCT+TGG | 0.267769 | 3.1:+40410123 | None:intergenic |
| CTCAACTCCGCAGAACTTTC+GGG | 0.271171 | 3.1:-40407147 | MS.gene064366:intron |
| GACGCTGGTCATAGAGTCTT+TGG | 0.279588 | 3.1:-40410158 | MS.gene064366:CDS |
| AAGCATACTCAGAAGTGTTT+TGG | 0.293617 | 3.1:+40409255 | None:intergenic |
| CTTCAGTCCTGCAATTTGAT+AGG | 0.293960 | 3.1:+40406933 | None:intergenic |
| CCTCAACTCCGCAGAACTTT+CGG | 0.295923 | 3.1:-40407148 | MS.gene064366:CDS |
| CGGATCTTTCCGCCGCTTGT+TGG | 0.314049 | 3.1:+40410255 | None:intergenic |
| AAGAAATCGTCTGAGGGTTT+TGG | 0.327681 | 3.1:-40408352 | MS.gene064366:CDS |
| GATATTCAGTGGCACTTCAT+TGG | 0.337723 | 3.1:-40409298 | MS.gene064366:CDS |
| AACTCGATCGGGTTTAGTTC+CGG | 0.356458 | 3.1:+40410235 | None:intergenic |
| GGAAGGATCAACACCAGATT+TGG | 0.364216 | 3.1:+40407259 | None:intergenic |
| AAGCCAGAGAATTCTAAGTT+TGG | 0.370526 | 3.1:+40407197 | None:intergenic |
| TCCAAATTTGGCCATGGTTG+AGG | 0.375364 | 3.1:-40408687 | MS.gene064366:CDS |
| CCAAATTTGGCCATGGTTGA+GGG | 0.385322 | 3.1:-40408686 | MS.gene064366:CDS |
| GAACTAAACCCGATCGAGTT+CGG | 0.386699 | 3.1:-40410232 | MS.gene064366:CDS |
| AACTAAACCCGATCGAGTTC+GGG | 0.394096 | 3.1:-40410231 | MS.gene064366:CDS |
| TTGTTTGTTGCAGCCAAATC+TGG | 0.399983 | 3.1:-40407272 | MS.gene064366:intron |
| CCCTCAGACGATTTCTTCCC+AGG | 0.401232 | 3.1:+40408358 | None:intergenic |
| TGTAGACCCTATCAAATTGC+AGG | 0.402948 | 3.1:-40406940 | MS.gene064366:intron |
| GCGAATCATGGAAATGGGTT+TGG | 0.406661 | 3.1:+40410190 | None:intergenic |
| AGTTTGCAAGGCACTTGAAA+TGG | 0.408160 | 3.1:-40406912 | MS.gene064366:CDS |
| ACGCTGGTCATAGAGTCTTT+GGG | 0.415706 | 3.1:-40410157 | MS.gene064366:CDS |
| GAGTTGGCGAATCATGGAAA+TGG | 0.416981 | 3.1:+40410184 | None:intergenic |
| ATATTCAGTGGCACTTCATT+GGG | 0.425650 | 3.1:-40409297 | MS.gene064366:CDS |
| GGAGCAATGTGAACTGTCAA+TGG | 0.426611 | 3.1:-40406885 | MS.gene064366:CDS |
| TTTGGCCATGGTTGAGGGCG+TGG | 0.429084 | 3.1:-40408681 | MS.gene064366:CDS |
| CAACAAGCGGCGGAAAGATC+CGG | 0.431700 | 3.1:-40410254 | MS.gene064366:CDS |
| TGACCGTATGGTTTCAAACC+TGG | 0.441164 | 3.1:-40408376 | MS.gene064366:CDS |
| TGTCCAAACTTAGAATTCTC+TGG | 0.463779 | 3.1:-40407200 | MS.gene064366:CDS |
| GTCATAGAGTTGGCGAATCA+TGG | 0.468873 | 3.1:+40410178 | None:intergenic |
| TTCTCTGGCTTAATGACAAT+AGG | 0.469053 | 3.1:-40407185 | MS.gene064366:CDS |
| AGTTGGCGAATCATGGAAAT+GGG | 0.484870 | 3.1:+40410185 | None:intergenic |
| GAACTGTCAATGGGCATGTC+TGG | 0.485338 | 3.1:-40406875 | MS.gene064366:CDS |
| CGGAGTTCCAAATTTGGCCA+TGG | 0.493079 | 3.1:-40408693 | MS.gene064366:CDS |
| TTCAGTCCTGCAATTTGATA+GGG | 0.493507 | 3.1:+40406934 | None:intergenic |
| GCAGCTGCTTCCGCCATCAC+CGG | 0.493802 | 3.1:+40410311 | None:intergenic |
| GAACTTACATTCTTCTCCAC+TGG | 0.501852 | 3.1:+40408317 | None:intergenic |
| GCAACGACCCGAACTCGATC+GGG | 0.502938 | 3.1:+40410224 | None:intergenic |
| TGCGGAGTTGAGGTATAGTC+TGG | 0.506981 | 3.1:+40407158 | None:intergenic |
| GGCAAACAACCTTGACCGTA+TGG | 0.508466 | 3.1:-40408388 | MS.gene064366:CDS |
| AATCGTTGAGAAAGCTCCTC+AGG | 0.525653 | 3.1:-40410117 | MS.gene064366:intron |
| TTTCCGCCGCTTGTTGGACA+CGG | 0.529093 | 3.1:+40410261 | None:intergenic |
| ACCAATGACATCTCCGGTGA+TGG | 0.531744 | 3.1:-40410324 | None:intergenic |
| TGCAACGACCCGAACTCGAT+CGG | 0.532215 | 3.1:+40410223 | None:intergenic |
| TTCCCAGGTTTGAAACCATA+CGG | 0.534502 | 3.1:+40408373 | None:intergenic |
| GCCATCACCGGAGATGTCAT+TGG | 0.538406 | 3.1:+40410323 | None:intergenic |
| CCGAAAGTTCTGCGGAGTTG+AGG | 0.549382 | 3.1:+40407148 | None:intergenic |
| CGCTGGTCATAGAGTCTTTG+GGG | 0.550567 | 3.1:-40410156 | MS.gene064366:CDS |
| GAGCAATGTGAACTGTCAAT+GGG | 0.553747 | 3.1:-40406884 | MS.gene064366:CDS |
| GACCGTATGGTTTCAAACCT+GGG | 0.557992 | 3.1:-40408375 | MS.gene064366:CDS |
| CAAGGCACTTGAAATGGACG+AGG | 0.572444 | 3.1:-40406906 | MS.gene064366:CDS |
| ATTCGCCAACTCTATGACGC+TGG | 0.577025 | 3.1:-40410173 | MS.gene064366:CDS |
| GGTTTGAAACCATACGGTCA+AGG | 0.578649 | 3.1:+40408379 | None:intergenic |
| TTGCAGGACTGAAGTTTGCA+AGG | 0.579031 | 3.1:-40406924 | MS.gene064366:CDS |
| CACACCACCAATGACATCTC+CGG | 0.585132 | 3.1:-40410330 | None:intergenic |
| TATGACCAGCGTCATAGAGT+TGG | 0.589921 | 3.1:+40410168 | None:intergenic |
| GCAAGATCAACACAATCGGA+AGG | 0.593111 | 3.1:+40407242 | None:intergenic |
| CCTGGGAAGAAATCGTCTGA+GGG | 0.593514 | 3.1:-40408358 | MS.gene064366:CDS |
| ACCTGGGAAGAAATCGTCTG+AGG | 0.602661 | 3.1:-40408359 | MS.gene064366:CDS |
| ATTGTCCACGCCCTCAACCA+TGG | 0.606710 | 3.1:+40408676 | None:intergenic |
| AATGACATCTCCGGTGATGG+CGG | 0.614760 | 3.1:-40410321 | MS.gene064366:CDS |
| TGAGGGCGTGGACAATCAGA+AGG | 0.626680 | 3.1:-40408669 | MS.gene064366:intron |
| AAGTGCCACTGAATATCTTG+CGG | 0.648199 | 3.1:+40409304 | None:intergenic |
| AGCTTCCGCAAGATATTCAG+TGG | 0.656965 | 3.1:-40409309 | MS.gene064366:CDS |
| GGACACGGAGCATTACTGAT+CGG | 0.662757 | 3.1:+40410276 | None:intergenic |
| AATGCTCCGTGTCCAACAAG+CGG | 0.669810 | 3.1:-40410267 | MS.gene064366:CDS |
| TTGGTGCAAGTAAATACCAG+TGG | 0.675365 | 3.1:-40408333 | MS.gene064366:CDS |
| GCTCCGTGTCCAACAAGCGG+CGG | 0.683370 | 3.1:-40410264 | MS.gene064366:CDS |
| ACTATTACCCGAAAGTTCTG+CGG | 0.684747 | 3.1:+40407140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCAATTTCTTAATTTTA+GGG | - | chr3.1:40407542-40407561 | MS.gene064366:intron | 10.0% |
| !!! | TTTATCAATTTCTTAATTTT+AGG | - | chr3.1:40407541-40407560 | MS.gene064366:intron | 10.0% |
| !! | AATAGAAAAGTAAAACAATA+TGG | + | chr3.1:40409641-40409660 | None:intergenic | 15.0% |
| !! | TTTAATTATATTCTGACTTA+TGG | + | chr3.1:40409346-40409365 | None:intergenic | 15.0% |
| !! | TTTATATATTTAGACATGTA+AGG | + | chr3.1:40409734-40409753 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTATCATCTGTT+TGG | - | chr3.1:40409304-40409323 | MS.gene064366:CDS | 15.0% |
| !!! | ATTTTTTAGAATCATTTCAT+TGG | - | chr3.1:40410008-40410027 | MS.gene064366:intron | 15.0% |
| !!! | CATTTATTCTAAGTTATTTT+AGG | + | chr3.1:40408108-40408127 | None:intergenic | 15.0% |
| !!! | TTTACTTTTCTATTATGTAT+TGG | - | chr3.1:40409647-40409666 | MS.gene064366:intron | 15.0% |
| !! | AACATCCTTCATATTTATAA+AGG | - | chr3.1:40408241-40408260 | MS.gene064366:intron | 20.0% |
| !! | ACATAATTCAGTGTAATTAT+AGG | + | chr3.1:40407102-40407121 | None:intergenic | 20.0% |
| !! | CTTGAAATATCTGATAATTA+TGG | - | chr3.1:40410281-40410300 | MS.gene064366:CDS | 20.0% |
| !! | TAACTCCTTTATAAATATGA+AGG | + | chr3.1:40408249-40408268 | None:intergenic | 20.0% |
| !! | TATTTATAAAGGAGTTATCT+TGG | - | chr3.1:40408252-40408271 | MS.gene064366:intron | 20.0% |
| !! | TTCTTTATCATCCTTATATT+AGG | - | chr3.1:40408297-40408316 | MS.gene064366:intron | 20.0% |
| !!! | AAAGTTCTAAGAATTTTGTT+TGG | - | chr3.1:40407702-40407721 | MS.gene064366:intron | 20.0% |
| !!! | AAGTTCTAAGAATTTTGTTT+GGG | - | chr3.1:40407703-40407722 | MS.gene064366:intron | 20.0% |
| !!! | CTTTTAGCAATATTTTAAGT+TGG | - | chr3.1:40407246-40407265 | MS.gene064366:CDS | 20.0% |
| !!! | GAGAGATTTATCTTTTTTTT+AGG | - | chr3.1:40409066-40409085 | MS.gene064366:intron | 20.0% |
| ! | AGTATAAAAATCAGAAACAG+TGG | + | chr3.1:40408208-40408227 | None:intergenic | 25.0% |
| ! | ATAATATGAACTCAAGAAAC+AGG | + | chr3.1:40409968-40409987 | None:intergenic | 25.0% |
| ! | ATAATTTCAGGGACAAATTT+GGG | - | chr3.1:40407583-40407602 | MS.gene064366:intron | 25.0% |
| ! | ATTTGTCTATCAAAAAAGAG+AGG | + | chr3.1:40409376-40409395 | None:intergenic | 25.0% |
| ! | CACACCATTTATAACATAAT+TGG | + | chr3.1:40408991-40409010 | None:intergenic | 25.0% |
| ! | CATGTTATCATATTAATGCT+TGG | - | chr3.1:40407167-40407186 | MS.gene064366:CDS | 25.0% |
| ! | GAAATTGTAGTTATGAAGTA+CGG | - | chr3.1:40407017-40407036 | MS.gene064366:intron | 25.0% |
| ! | GAGTGATGTTAGTAAAATAT+AGG | - | chr3.1:40408911-40408930 | MS.gene064366:intron | 25.0% |
| ! | GATGTTAGTAAAATATAGGA+AGG | - | chr3.1:40408915-40408934 | MS.gene064366:intron | 25.0% |
| ! | GTGACCAATTATGTTATAAA+TGG | - | chr3.1:40408984-40409003 | MS.gene064366:intron | 25.0% |
| ! | GTTAACGTTAACCTAATATA+AGG | + | chr3.1:40408311-40408330 | None:intergenic | 25.0% |
| ! | GTTGTGCTCAATTATAATTT+AGG | - | chr3.1:40408488-40408507 | MS.gene064366:intron | 25.0% |
| ! | TAAAGGTTTGTCAAATGATA+TGG | + | chr3.1:40408607-40408626 | None:intergenic | 25.0% |
| ! | TATAATTTCAGGGACAAATT+TGG | - | chr3.1:40407582-40407601 | MS.gene064366:intron | 25.0% |
| ! | TCTCAAATTATTATGTGTGT+CGG | - | chr3.1:40407127-40407146 | MS.gene064366:intron | 25.0% |
| ! | TTAGTAAAATATAGGAAGGA+GGG | - | chr3.1:40408919-40408938 | MS.gene064366:intron | 25.0% |
| ! | TTGTATTTGGTTATTTACGA+GGG | - | chr3.1:40408784-40408803 | MS.gene064366:intron | 25.0% |
| !! | AAAAAAAGTTTTCATACCTG+AGG | + | chr3.1:40406948-40406967 | None:intergenic | 25.0% |
| !! | AAGAAGTTGAAATAAGCTTT+TGG | + | chr3.1:40408037-40408056 | None:intergenic | 25.0% |
| !! | ACTAAACTCAAAGTATTCTA+AGG | + | chr3.1:40407952-40407971 | None:intergenic | 25.0% |
| !! | AGAAGTTGAAATAAGCTTTT+GGG | + | chr3.1:40408036-40408055 | None:intergenic | 25.0% |
| !! | AGTGATTATGTTAGTTTCTA+AGG | - | chr3.1:40409407-40409426 | MS.gene064366:intron | 25.0% |
| !! | ATATATTCTCCTCTTATTTG+AGG | - | chr3.1:40409155-40409174 | MS.gene064366:intron | 25.0% |
| !! | ATCTGATAATTATGGTCTTA+CGG | - | chr3.1:40410289-40410308 | MS.gene064366:CDS | 25.0% |
| !! | ATTCCTTTTAGATAACTAGT+TGG | - | chr3.1:40408531-40408550 | MS.gene064366:intron | 25.0% |
| !! | ATTTGAAATGCAATATGAAG+AGG | + | chr3.1:40406973-40406992 | None:intergenic | 25.0% |
| !! | CTCTAAATTCTTGTTGTATT+TGG | - | chr3.1:40408771-40408790 | MS.gene064366:intron | 25.0% |
| !! | TAATTTGAAATATTCGCCAA+TGG | - | chr3.1:40407468-40407487 | MS.gene064366:intron | 25.0% |
| !!! | AGTTCTAAGAATTTTGTTTG+GGG | - | chr3.1:40407704-40407723 | MS.gene064366:intron | 25.0% |
| !!! | TAGTTATATTCTAAAGCATG+TGG | - | chr3.1:40409925-40409944 | MS.gene064366:intron | 25.0% |
| AAGTCACAACATACACAATA+AGG | + | chr3.1:40409211-40409230 | None:intergenic | 30.0% | |
| AATTAACGAAGCTCTACATA+CGG | + | chr3.1:40407453-40407472 | None:intergenic | 30.0% | |
| AATTATAATTGAGCACAACC+TGG | + | chr3.1:40408487-40408506 | None:intergenic | 30.0% | |
| ACTCCAACTAGTTATCTAAA+AGG | + | chr3.1:40408537-40408556 | None:intergenic | 30.0% | |
| AGTCACAACATACACAATAA+GGG | + | chr3.1:40409210-40409229 | None:intergenic | 30.0% | |
| ATAAATGGTGTGAAAAGAGA+GGG | - | chr3.1:40408999-40409018 | MS.gene064366:intron | 30.0% | |
| ATATTTGAATGTGGGCAAAT+AGG | - | chr3.1:40408854-40408873 | MS.gene064366:intron | 30.0% | |
| ATTCATTGCAGATAATGACA+TGG | - | chr3.1:40409557-40409576 | MS.gene064366:intron | 30.0% | |
| ATTTGCCCACATTCAAATAT+GGG | + | chr3.1:40408854-40408873 | None:intergenic | 30.0% | |
| CGCTAGCAAATATAATTTCA+GGG | - | chr3.1:40407572-40407591 | MS.gene064366:intron | 30.0% | |
| GAAGTACAAGAACACATTAA+AGG | + | chr3.1:40408624-40408643 | None:intergenic | 30.0% | |
| GTTAGTAAAATATAGGAAGG+AGG | - | chr3.1:40408918-40408937 | MS.gene064366:intron | 30.0% | |
| GTTGTATTTGGTTATTTACG+AGG | - | chr3.1:40408783-40408802 | MS.gene064366:intron | 30.0% | |
| TAATTTCAGGGACAAATTTG+GGG | - | chr3.1:40407584-40407603 | MS.gene064366:intron | 30.0% | |
| TAGTTCAACAGCTATTAGAT+TGG | - | chr3.1:40409600-40409619 | MS.gene064366:intron | 30.0% | |
| TATAAATGGTGTGAAAAGAG+AGG | - | chr3.1:40408998-40409017 | MS.gene064366:intron | 30.0% | |
| TATTTGCCCACATTCAAATA+TGG | + | chr3.1:40408855-40408874 | None:intergenic | 30.0% | |
| TCGCTAGCAAATATAATTTC+AGG | - | chr3.1:40407571-40407590 | MS.gene064366:intron | 30.0% | |
| TTCCTGACACTAAATTAAGA+AGG | + | chr3.1:40409284-40409303 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGAGT+TGG | + | chr3.1:40407374-40407393 | None:intergenic | 30.0% | |
| ! | AAACATCATAGAGTATCTCA+TGG | - | chr3.1:40408062-40408081 | MS.gene064366:intron | 30.0% |
| ! | CTTTTCTATTAGAGCTGTAA+AGG | - | chr3.1:40409034-40409053 | MS.gene064366:intron | 30.0% |
| ! | TTTTGCAAGATCAACACAAT+CGG | + | chr3.1:40409811-40409830 | None:intergenic | 30.0% |
| !! | AAGAATTTTGTTTGGGGATT+TGG | - | chr3.1:40407710-40407729 | MS.gene064366:intron | 30.0% |
| !! | TATGCTTTAATTTGATCTCC+AGG | - | chr3.1:40408466-40408485 | MS.gene064366:intron | 30.0% |
| !! | TCAGTAACTTTGGAATAAGA+GGG | + | chr3.1:40409517-40409536 | None:intergenic | 30.0% |
| !!! | GCTTTTTTTGTAGTTTCACT+AGG | - | chr3.1:40407907-40407926 | MS.gene064366:intron | 30.0% |
| !!! | TGTGTTATTTTTGTTCTGTC+TGG | - | chr3.1:40407675-40407694 | MS.gene064366:intron | 30.0% |
| AAAATATAGGAAGGAGGGAA+AGG | - | chr3.1:40408924-40408943 | MS.gene064366:intron | 35.0% | |
| AAGCCAGAGAATTCTAAGTT+TGG | + | chr3.1:40409852-40409871 | None:intergenic | 35.0% | |
| AATATGGGATCCTAACAGTA+TGG | + | chr3.1:40408839-40408858 | None:intergenic | 35.0% | |
| ACGATAAACTTGTATGCATG+AGG | - | chr3.1:40407294-40407313 | MS.gene064366:intron | 35.0% | |
| ACTAAGCTGATTATCTAGAC+AGG | - | chr3.1:40408132-40408151 | MS.gene064366:intron | 35.0% | |
| AGATATGCCGAATATGTGAT+AGG | + | chr3.1:40409183-40409202 | None:intergenic | 35.0% | |
| AGCTTATCGAAATCACAGTT+TGG | + | chr3.1:40408561-40408580 | None:intergenic | 35.0% | |
| AGGATCCCATATTTGAATGT+GGG | - | chr3.1:40408846-40408865 | MS.gene064366:intron | 35.0% | |
| ATATTCAGTGGCACTTCATT+GGG | - | chr3.1:40407749-40407768 | MS.gene064366:intron | 35.0% | |
| ATTCTTGCATGCCTATTATG+TGG | - | chr3.1:40408887-40408906 | MS.gene064366:intron | 35.0% | |
| CTAAGAGCTACTGGTAATAT+TGG | + | chr3.1:40408416-40408435 | None:intergenic | 35.0% | |
| CTATTAGAGCTGTAAAGGTT+GGG | - | chr3.1:40409039-40409058 | MS.gene064366:intron | 35.0% | |
| CTTATTCCAAAGTTACTGAG+TGG | - | chr3.1:40409518-40409537 | MS.gene064366:intron | 35.0% | |
| GACACTAAATTAAGAAGGCA+CGG | + | chr3.1:40409279-40409298 | None:intergenic | 35.0% | |
| GGCATGCAAGAATTAACTAA+CGG | + | chr3.1:40408880-40408899 | None:intergenic | 35.0% | |
| GTGCATTGTTTGTCAGAATA+CGG | - | chr3.1:40409698-40409717 | MS.gene064366:intron | 35.0% | |
| TAAAAGCCACTCAGTAACTT+TGG | + | chr3.1:40409527-40409546 | None:intergenic | 35.0% | |
| TAAAGGAGTTATCTTGGTTG+AGG | - | chr3.1:40408258-40408277 | MS.gene064366:intron | 35.0% | |
| TAGGATCCCATATTTGAATG+TGG | - | chr3.1:40408845-40408864 | MS.gene064366:intron | 35.0% | |
| TCTATTAGAGCTGTAAAGGT+TGG | - | chr3.1:40409038-40409057 | MS.gene064366:intron | 35.0% | |
| TGAGGTTCCTATCACATATT+CGG | - | chr3.1:40409173-40409192 | MS.gene064366:intron | 35.0% | |
| TGATAGGAACCTCAAATAAG+AGG | + | chr3.1:40409167-40409186 | None:intergenic | 35.0% | |
| TGCCTTCTTAATTTAGTGTC+AGG | - | chr3.1:40409279-40409298 | MS.gene064366:CDS | 35.0% | |
| TGTCCAAACTTAGAATTCTC+TGG | - | chr3.1:40409846-40409865 | MS.gene064366:intron | 35.0% | |
| TGTTCTTGTACTTCTGTAAC+TGG | - | chr3.1:40408630-40408649 | MS.gene064366:intron | 35.0% | |
| TTATCTTGGTTGAGGTTGTT+TGG | - | chr3.1:40408266-40408285 | MS.gene064366:intron | 35.0% | |
| TTCAGTCCTGCAATTTGATA+GGG | + | chr3.1:40410115-40410134 | None:intergenic | 35.0% | |
| TTCTTGCATGCCTATTATGT+GGG | - | chr3.1:40408888-40408907 | MS.gene064366:intron | 35.0% | |
| TTGTCAAATGATATGGCAAG+TGG | + | chr3.1:40408600-40408619 | None:intergenic | 35.0% | |
| ! | ATTATTATGTGTGTCGGTGT+AGG | - | chr3.1:40407133-40407152 | MS.gene064366:intron | 35.0% |
| ! | CATGGATAAGTGCTTGATTT+TGG | - | chr3.1:40408080-40408099 | MS.gene064366:intron | 35.0% |
| ! | TCTGCATCACTGTAATTTTG+TGG | - | chr3.1:40409238-40409257 | MS.gene064366:intron | 35.0% |
| ! | TTCATATCTCTAAGAGCTAC+TGG | + | chr3.1:40408425-40408444 | None:intergenic | 35.0% |
| ! | TTCTCTGGCTTAATGACAAT+AGG | - | chr3.1:40409861-40409880 | MS.gene064366:intron | 35.0% |
| !! | CAGTAACTTTGGAATAAGAG+GGG | + | chr3.1:40409516-40409535 | None:intergenic | 35.0% |
| !! | CTCAGTAACTTTGGAATAAG+AGG | + | chr3.1:40409518-40409537 | None:intergenic | 35.0% |
| !! | GAATCATTTCATTGGTTTCG+TGG | - | chr3.1:40410016-40410035 | MS.gene064366:intron | 35.0% |
| !! | GGATGCTTTTTACCTCATAA+GGG | - | chr3.1:40410310-40410329 | MS.gene064366:CDS | 35.0% |
| !! | GTAATTATAGGTGTCACTGT+CGG | + | chr3.1:40407090-40407109 | None:intergenic | 35.0% |
| !! | TTATCTAGACAGGTTCTAAG+TGG | - | chr3.1:40408142-40408161 | MS.gene064366:intron | 35.0% |
| !! | TTGAAGGAGTTTTAACCAAG+AGG | + | chr3.1:40409446-40409465 | None:intergenic | 35.0% |
| !! | TTTTAGGAGCAATAGCTCTT+GGG | - | chr3.1:40409082-40409101 | MS.gene064366:intron | 35.0% |
| !! | TTTTTAGGAGCAATAGCTCT+TGG | - | chr3.1:40409081-40409100 | MS.gene064366:intron | 35.0% |
| !!! | AAGCATACTCAGAAGTGTTT+TGG | + | chr3.1:40407794-40407813 | None:intergenic | 35.0% |
| !!! | GGGCATGTCATTGTTTTTAT+AGG | + | chr3.1:40408016-40408035 | None:intergenic | 35.0% |
| AAACTCCTTCAACATTGCTC+AGG | - | chr3.1:40409454-40409473 | MS.gene064366:intron | 40.0% | |
| AACATCACTCCCCACATAAT+AGG | + | chr3.1:40408901-40408920 | None:intergenic | 40.0% | |
| ACTATTACCCGAAAGTTCTG+CGG | + | chr3.1:40409909-40409928 | None:intergenic | 40.0% | |
| AGTTGGCGAATCATGGAAAT+GGG | + | chr3.1:40406864-40406883 | None:intergenic | 40.0% | |
| CCTGCATAATAAAGCACACA+AGG | + | chr3.1:40408333-40408352 | None:intergenic | 40.0% | |
| CTTCAGTCCTGCAATTTGAT+AGG | + | chr3.1:40410116-40410135 | None:intergenic | 40.0% | |
| GAACTTACATTCTTCTCCAC+TGG | + | chr3.1:40408732-40408751 | None:intergenic | 40.0% | |
| GAGCAATGTGAACTGTCAAT+GGG | - | chr3.1:40410162-40410181 | MS.gene064366:CDS | 40.0% | |
| GAGCTTTCTCAACGATTTCT+TGG | + | chr3.1:40406926-40406945 | None:intergenic | 40.0% | |
| GATATTCAGTGGCACTTCAT+TGG | - | chr3.1:40407748-40407767 | MS.gene064366:intron | 40.0% | |
| TATGCATGAGGTCTAGTTGT+AGG | - | chr3.1:40407306-40407325 | MS.gene064366:intron | 40.0% | |
| TCCCAAGAACAAGTTTATCC+CGG | + | chr3.1:40408168-40408187 | None:intergenic | 40.0% | |
| TCCTTAGATTAGGTGTCTCA+CGG | - | chr3.1:40407044-40407063 | MS.gene064366:intron | 40.0% | |
| TCTTGCATGCCTATTATGTG+GGG | - | chr3.1:40408889-40408908 | MS.gene064366:intron | 40.0% | |
| TGTAGACCCTATCAAATTGC+AGG | - | chr3.1:40410106-40410125 | MS.gene064366:intron | 40.0% | |
| TTGGTGCAAGTAAATACCAG+TGG | - | chr3.1:40408713-40408732 | MS.gene064366:intron | 40.0% | |
| ! | AAGAAATCGTCTGAGGGTTT+TGG | - | chr3.1:40408694-40408713 | MS.gene064366:CDS | 40.0% |
| ! | AAGTGCCACTGAATATCTTG+CGG | + | chr3.1:40407745-40407764 | None:intergenic | 40.0% |
| ! | AGTTTGCAAGGCACTTGAAA+TGG | - | chr3.1:40410134-40410153 | MS.gene064366:CDS | 40.0% |
| ! | CCTTGTGTGCTTTATTATGC+AGG | - | chr3.1:40408330-40408349 | MS.gene064366:CDS | 40.0% |
| ! | TGTGTGCTTTATTATGCAGG+CGG | - | chr3.1:40408333-40408352 | MS.gene064366:CDS | 40.0% |
| ! | TTCCCAGGTTTGAAACCATA+CGG | + | chr3.1:40408676-40408695 | None:intergenic | 40.0% |
| ! | TTGTTTGTTGCAGCCAAATC+TGG | - | chr3.1:40409774-40409793 | MS.gene064366:intron | 40.0% |
| !! | AACTTTGGAATAAGAGGGGA+AGG | + | chr3.1:40409512-40409531 | None:intergenic | 40.0% |
| !! | CATGGAAATGGGTTTGGTTT+TGG | + | chr3.1:40406853-40406872 | None:intergenic | 40.0% |
| !! | CGGATGCTTTTTACCTCATA+AGG | - | chr3.1:40410309-40410328 | MS.gene064366:CDS | 40.0% |
| AAAGGATTATGACCTGGCAG+AGG | - | chr3.1:40408942-40408961 | MS.gene064366:intron | 45.0% | |
| AACTAAACCCGATCGAGTTC+GGG | - | chr3.1:40406815-40406834 | MS.gene064366:intron | 45.0% | |
| AATCGTTGAGAAAGCTCCTC+AGG | - | chr3.1:40406929-40406948 | MS.gene064366:CDS | 45.0% | |
| ACCGTGAGACACCTAATCTA+AGG | + | chr3.1:40407048-40407067 | None:intergenic | 45.0% | |
| ACGCTGGTCATAGAGTCTTT+GGG | - | chr3.1:40406889-40406908 | MS.gene064366:CDS | 45.0% | |
| AGCAATAGCTCTTGGGTTAC+AGG | - | chr3.1:40409089-40409108 | MS.gene064366:intron | 45.0% | |
| AGCTTCCGCAAGATATTCAG+TGG | - | chr3.1:40407737-40407756 | MS.gene064366:intron | 45.0% | |
| AGTCCCATCATCACTTCCAT+TGG | + | chr3.1:40407487-40407506 | None:intergenic | 45.0% | |
| CCAAATTTGGCCATGGTTGA+GGG | - | chr3.1:40408360-40408379 | MS.gene064366:CDS | 45.0% | |
| CTTGTACTTCTGTAACTGGC+AGG | - | chr3.1:40408634-40408653 | MS.gene064366:intron | 45.0% | |
| GAACTAAACCCGATCGAGTT+CGG | - | chr3.1:40406814-40406833 | MS.gene064366:intron | 45.0% | |
| GACATTAGAGTTTAGCGTCG+AGG | + | chr3.1:40410056-40410075 | None:intergenic | 45.0% | |
| GACCGTATGGTTTCAAACCT+GGG | - | chr3.1:40408671-40408690 | MS.gene064366:CDS | 45.0% | |
| GAGTTGGCGAATCATGGAAA+TGG | + | chr3.1:40406865-40406884 | None:intergenic | 45.0% | |
| GATGACCTGAGCAATGTTGA+AGG | + | chr3.1:40409462-40409481 | None:intergenic | 45.0% | |
| GCAAGATCAACACAATCGGA+AGG | + | chr3.1:40409807-40409826 | None:intergenic | 45.0% | |
| GCAATAGCTCTTGGGTTACA+GGG | - | chr3.1:40409090-40409109 | MS.gene064366:intron | 45.0% | |
| GGAAGGATCAACACCAGATT+TGG | + | chr3.1:40409790-40409809 | None:intergenic | 45.0% | |
| GGAGCAATGTGAACTGTCAA+TGG | - | chr3.1:40410161-40410180 | MS.gene064366:CDS | 45.0% | |
| GTACGGACACTCCTTAGATT+AGG | - | chr3.1:40407034-40407053 | MS.gene064366:intron | 45.0% | |
| GTCATAGAGTTGGCGAATCA+TGG | + | chr3.1:40406871-40406890 | None:intergenic | 45.0% | |
| TATGACCAGCGTCATAGAGT+TGG | + | chr3.1:40406881-40406900 | None:intergenic | 45.0% | |
| TCCAAATTTGGCCATGGTTG+AGG | - | chr3.1:40408359-40408378 | MS.gene064366:CDS | 45.0% | |
| TCGCCAATGGAAGTGATGAT+GGG | - | chr3.1:40407481-40407500 | MS.gene064366:intron | 45.0% | |
| TGACCGTATGGTTTCAAACC+TGG | - | chr3.1:40408670-40408689 | MS.gene064366:CDS | 45.0% | |
| TTCGCCAATGGAAGTGATGA+TGG | - | chr3.1:40407480-40407499 | MS.gene064366:intron | 45.0% | |
| TTGCAGGACTGAAGTTTGCA+AGG | - | chr3.1:40410122-40410141 | MS.gene064366:CDS | 45.0% | |
| ! | AACTCGATCGGGTTTAGTTC+CGG | + | chr3.1:40406814-40406833 | None:intergenic | 45.0% |
| ! | GCCGGGATAAACTTGTTCTT+GGG | - | chr3.1:40408164-40408183 | MS.gene064366:intron | 45.0% |
| ! | GCGAATCATGGAAATGGGTT+TGG | + | chr3.1:40406859-40406878 | None:intergenic | 45.0% |
| ! | GGTTTGAAACCATACGGTCA+AGG | + | chr3.1:40408670-40408689 | None:intergenic | 45.0% |
| !! | CACATGAGTTGGTGTTGTGT+TGG | + | chr3.1:40407363-40407382 | None:intergenic | 45.0% |
| !! | GGAGTTTTAACCAAGAGGTC+TGG | + | chr3.1:40409441-40409460 | None:intergenic | 45.0% |
| !!! | GCGATTTTGAGTTAGCGGTA+TGG | - | chr3.1:40410193-40410212 | MS.gene064366:CDS | 45.0% |
| !!! | GTCTGGCGATTTTGAGTTAG+CGG | - | chr3.1:40410188-40410207 | MS.gene064366:CDS | 45.0% |
| AATGCTCCGTGTCCAACAAG+CGG | - | chr3.1:40406779-40406798 | MS.gene064366:intron | 50.0% | |
| ACCTGGGAAGAAATCGTCTG+AGG | - | chr3.1:40408687-40408706 | MS.gene064366:CDS | 50.0% | |
| ACGAGGGTTTCCAACATCCT+CGG | - | chr3.1:40408800-40408819 | MS.gene064366:intron | 50.0% | |
| ATTCGCCAACTCTATGACGC+TGG | - | chr3.1:40406873-40406892 | MS.gene064366:CDS | 50.0% | |
| CCCTCAACCATGGCCAAATT+TGG | + | chr3.1:40408363-40408382 | None:intergenic | 50.0% | |
| CCTCAACTCCGCAGAACTTT+CGG | - | chr3.1:40409898-40409917 | MS.gene064366:intron | 50.0% | |
| CCTGGGAAGAAATCGTCTGA+GGG | - | chr3.1:40408688-40408707 | MS.gene064366:CDS | 50.0% | |
| CGAAGCTGAGCCATACTGTT+AGG | - | chr3.1:40408826-40408845 | MS.gene064366:intron | 50.0% | |
| CGCTGGTCATAGAGTCTTTG+GGG | - | chr3.1:40406890-40406909 | MS.gene064366:CDS | 50.0% | |
| CGGAGTTCCAAATTTGGCCA+TGG | - | chr3.1:40408353-40408372 | MS.gene064366:CDS | 50.0% | |
| CTCAACTCCGCAGAACTTTC+GGG | - | chr3.1:40409899-40409918 | MS.gene064366:intron | 50.0% | |
| GAACTGTCAATGGGCATGTC+TGG | - | chr3.1:40410171-40410190 | MS.gene064366:CDS | 50.0% | |
| GACGCTGGTCATAGAGTCTT+TGG | - | chr3.1:40406888-40406907 | MS.gene064366:CDS | 50.0% | |
| GGAGGGAAAGGATTATGACC+TGG | - | chr3.1:40408936-40408955 | MS.gene064366:intron | 50.0% | |
| GGCAAACAACCTTGACCGTA+TGG | - | chr3.1:40408658-40408677 | MS.gene064366:intron | 50.0% | |
| GGTTAGAACTCCAGACCTCT+TGG | - | chr3.1:40409428-40409447 | MS.gene064366:intron | 50.0% | |
| GTACTTCTGTAACTGGCAGG+TGG | - | chr3.1:40408637-40408656 | MS.gene064366:intron | 50.0% | |
| TATGACCTGGCAGAGGCTAA+GGG | - | chr3.1:40408949-40408968 | MS.gene064366:intron | 50.0% | |
| TGACGCGTGTGTCAAAAACC+AGG | + | chr3.1:40407336-40407355 | None:intergenic | 50.0% | |
| TGATTCCCAAGTAGGCAGCT+CGG | + | chr3.1:40409487-40409506 | None:intergenic | 50.0% | |
| TGCAGGCGGAGTTCCAAATT+TGG | - | chr3.1:40408347-40408366 | MS.gene064366:CDS | 50.0% | |
| TGCGGAGTTGAGGTATAGTC+TGG | + | chr3.1:40409891-40409910 | None:intergenic | 50.0% | |
| TTATGACCTGGCAGAGGCTA+AGG | - | chr3.1:40408948-40408967 | MS.gene064366:intron | 50.0% | |
| ! | CAAGGCACTTGAAATGGACG+AGG | - | chr3.1:40410140-40410159 | MS.gene064366:CDS | 50.0% |
| ! | GGAAGGTGTGATTCCCAAGT+AGG | + | chr3.1:40409495-40409514 | None:intergenic | 50.0% |
| ! | GGACACGGAGCATTACTGAT+CGG | + | chr3.1:40406773-40406792 | None:intergenic | 50.0% |
| ! | GGCCGGGATAAACTTGTTCT+TGG | - | chr3.1:40408163-40408182 | MS.gene064366:intron | 50.0% |
| !! | CTAGACAGGTTCTAAGTGGC+CGG | - | chr3.1:40408146-40408165 | MS.gene064366:intron | 50.0% |
| !! | TAGACAGGTTCTAAGTGGCC+GGG | - | chr3.1:40408147-40408166 | MS.gene064366:intron | 50.0% |
| ATCCACCGAGCTGCCTACTT+GGG | - | chr3.1:40409479-40409498 | MS.gene064366:intron | 55.0% | |
| ATTGTCCACGCCCTCAACCA+TGG | + | chr3.1:40408373-40408392 | None:intergenic | 55.0% | |
| CAACAAGCGGCGGAAAGATC+CGG | - | chr3.1:40406792-40406811 | MS.gene064366:intron | 55.0% | |
| CCCTCAGACGATTTCTTCCC+AGG | + | chr3.1:40408691-40408710 | None:intergenic | 55.0% | |
| CCGAAAGTTCTGCGGAGTTG+AGG | + | chr3.1:40409901-40409920 | None:intergenic | 55.0% | |
| CGAGGGTTTCCAACATCCTC+GGG | - | chr3.1:40408801-40408820 | MS.gene064366:intron | 55.0% | |
| GGTCTAGTTGTAGGTGTGCC+TGG | - | chr3.1:40407315-40407334 | MS.gene064366:intron | 55.0% | |
| TGCAACGACCCGAACTCGAT+CGG | + | chr3.1:40406826-40406845 | None:intergenic | 55.0% | |
| ! | TGAGGGCGTGGACAATCAGA+AGG | - | chr3.1:40408377-40408396 | MS.gene064366:CDS | 55.0% |
| ! | TTTCCGCCGCTTGTTGGACA+CGG | + | chr3.1:40406788-40406807 | None:intergenic | 55.0% |
| CATCCACCGAGCTGCCTACT+TGG | - | chr3.1:40409478-40409497 | MS.gene064366:intron | 60.0% | |
| CGGATCTTTCCGCCGCTTGT+TGG | + | chr3.1:40406794-40406813 | None:intergenic | 60.0% | |
| GCAACGACCCGAACTCGATC+GGG | + | chr3.1:40406825-40406844 | None:intergenic | 60.0% | |
| TTCCCAAGTAGGCAGCTCGG+TGG | + | chr3.1:40409484-40409503 | None:intergenic | 60.0% | |
| TTTGGCCATGGTTGAGGGCG+TGG | - | chr3.1:40408365-40408384 | MS.gene064366:CDS | 60.0% | |
| AGCTTCGCGCCCGAGGATGT+TGG | + | chr3.1:40408813-40408832 | None:intergenic | 65.0% | |
| GCAGCTGCTTCCGCCATCAC+CGG | + | chr3.1:40406738-40406757 | None:intergenic | 65.0% | |
| GCTCCGTGTCCAACAAGCGG+CGG | - | chr3.1:40406782-40406801 | MS.gene064366:intron | 65.0% | |
| GTGCACCCTTAGCCTCTGCC+AGG | + | chr3.1:40408957-40408976 | None:intergenic | 65.0% | |
| ATGGCTCAGCTTCGCGCCCG+AGG | + | chr3.1:40408820-40408839 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40406726 | 40410342 | 40406726 | ID=MS.gene064366 |
| chr3.1 | mRNA | 40406726 | 40410342 | 40406726 | ID=MS.gene064366.t1;Parent=MS.gene064366 |
| chr3.1 | exon | 40410118 | 40410342 | 40410118 | ID=MS.gene064366.t1.exon1;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40410118 | 40410342 | 40410118 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40409263 | 40409329 | 40409263 | ID=MS.gene064366.t1.exon2;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40409263 | 40409329 | 40409263 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40408670 | 40408716 | 40408670 | ID=MS.gene064366.t1.exon3;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40408670 | 40408716 | 40408670 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40408325 | 40408412 | 40408325 | ID=MS.gene064366.t1.exon4;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40408325 | 40408412 | 40408325 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40407148 | 40407281 | 40407148 | ID=MS.gene064366.t1.exon5;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40407148 | 40407281 | 40407148 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40406859 | 40406957 | 40406859 | ID=MS.gene064366.t1.exon6;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40406859 | 40406957 | 40406859 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| chr3.1 | exon | 40406726 | 40406737 | 40406726 | ID=MS.gene064366.t1.exon7;Parent=MS.gene064366.t1 |
| chr3.1 | CDS | 40406726 | 40406737 | 40406726 | ID=cds.MS.gene064366.t1;Parent=MS.gene064366.t1 |
| Gene Sequence |
| Protein sequence |
