Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007821.t1 | AFK39115.1 | 97.6 | 125 | 3 | 0 | 35 | 159 | 69 | 193 | 2.40E-69 | 271.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007821.t1 | Q0DC89 | 83.6 | 116 | 19 | 0 | 44 | 159 | 88 | 203 | 9.6e-59 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007821.t1 | I3SN78 | 97.6 | 125 | 3 | 0 | 35 | 159 | 69 | 193 | 1.7e-69 | 271.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007821 | MS.gene30166 | PPI |
| MS.gene007821 | MS.gene027087 | PPI |
| MS.gene007821 | MS.gene82727 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007821.t1 | MTR_8g461030 | 97.600 | 125 | 3 | 0 | 35 | 159 | 69 | 193 | 1.38e-92 | 267 |
| MS.gene007821.t1 | MTR_4g092800 | 44.444 | 117 | 60 | 2 | 46 | 160 | 65 | 178 | 8.84e-30 | 107 |
| MS.gene007821.t1 | MTR_2g020930 | 42.735 | 117 | 62 | 2 | 46 | 160 | 11 | 124 | 1.35e-27 | 100 |
| MS.gene007821.t1 | MTR_2g020950 | 39.130 | 115 | 65 | 2 | 48 | 160 | 12 | 123 | 4.58e-23 | 89.0 |
| MS.gene007821.t1 | MTR_2g020900 | 38.710 | 93 | 48 | 3 | 72 | 160 | 47 | 134 | 4.58e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007821.t1 | AT1G53670 | 78.333 | 120 | 26 | 0 | 41 | 160 | 69 | 188 | 7.50e-74 | 220 |
| MS.gene007821.t1 | AT1G53670 | 73.333 | 120 | 25 | 1 | 41 | 160 | 69 | 181 | 4.41e-67 | 202 |
| MS.gene007821.t1 | AT4G04800 | 40.580 | 138 | 74 | 4 | 27 | 160 | 30 | 163 | 1.71e-29 | 106 |
| MS.gene007821.t1 | AT4G21840 | 43.478 | 115 | 60 | 2 | 47 | 159 | 18 | 129 | 1.77e-27 | 100 |
| MS.gene007821.t1 | AT4G21830 | 43.478 | 115 | 60 | 2 | 47 | 159 | 16 | 127 | 2.20e-27 | 100 |
| MS.gene007821.t1 | AT4G04830 | 41.026 | 117 | 64 | 2 | 46 | 160 | 11 | 124 | 3.01e-27 | 99.8 |
| MS.gene007821.t1 | AT4G21830 | 43.478 | 115 | 60 | 2 | 47 | 159 | 19 | 130 | 3.76e-27 | 99.8 |
| MS.gene007821.t1 | AT4G21850 | 41.379 | 116 | 63 | 2 | 47 | 160 | 19 | 131 | 2.11e-26 | 97.8 |
| MS.gene007821.t1 | AT4G21860 | 40.157 | 127 | 71 | 2 | 36 | 160 | 66 | 189 | 4.14e-26 | 98.6 |
| MS.gene007821.t1 | AT4G21860 | 40.157 | 127 | 71 | 2 | 36 | 160 | 66 | 189 | 4.14e-26 | 98.6 |
| MS.gene007821.t1 | AT4G21860 | 40.157 | 127 | 71 | 2 | 36 | 160 | 66 | 189 | 4.14e-26 | 98.6 |
| MS.gene007821.t1 | AT4G04810 | 40.171 | 117 | 65 | 2 | 46 | 160 | 11 | 124 | 2.21e-25 | 94.7 |
| MS.gene007821.t1 | AT4G04840 | 37.931 | 116 | 67 | 2 | 46 | 159 | 27 | 139 | 7.10e-25 | 94.0 |
| MS.gene007821.t1 | AT4G04830 | 37.607 | 117 | 58 | 4 | 46 | 160 | 11 | 114 | 2.23e-19 | 79.3 |
| MS.gene007821.t1 | AT4G21850 | 43.902 | 82 | 45 | 1 | 47 | 127 | 19 | 100 | 4.20e-18 | 75.9 |
| MS.gene007821.t1 | AT4G21860 | 46.667 | 75 | 40 | 0 | 36 | 110 | 66 | 140 | 1.58e-17 | 75.9 |
| MS.gene007821.t1 | AT4G04810 | 39.744 | 78 | 47 | 0 | 46 | 123 | 11 | 88 | 4.08e-17 | 72.8 |
Find 33 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGTACTTACTCAAATA+AGG | 0.239315 | 8.1:-53751547 | None:intergenic |
| AGAGTTGTATGTTGGTTATA+AGG | 0.359796 | 8.1:+53749778 | MS.gene007821:CDS |
| ATGGTAAGTCCCTTCAGTTT+TGG | 0.402394 | 8.1:-53751505 | None:intergenic |
| TAACCAACATACAACTCTTC+AGG | 0.403528 | 8.1:-53749773 | None:intergenic |
| CAGACTGGAGTGGAGTTAAC+AGG | 0.406749 | 8.1:+53749852 | MS.gene007821:CDS |
| CTCAAAGATTTATAATCAAC+AGG | 0.409019 | 8.1:-53750306 | None:intergenic |
| AAACAGCACAGAGAACTTCT+TGG | 0.410701 | 8.1:-53751787 | None:intergenic |
| CCATCTTATTACCAGCCAAT+TGG | 0.445663 | 8.1:+53751716 | MS.gene007821:CDS |
| GGAACTGAGAGCGCTTTCAC+TGG | 0.445774 | 8.1:+53750387 | MS.gene007821:CDS |
| ACCAAGTTTAATAGTGGAAC+TGG | 0.451127 | 8.1:+53751689 | MS.gene007821:CDS |
| TAAAGTACTTACTCAAATAA+GGG | 0.456545 | 8.1:-53751546 | None:intergenic |
| TATGTTGGTTATAAGGTTGG+TGG | 0.476249 | 8.1:+53749785 | MS.gene007821:CDS |
| AATCTTTGAGTGATGAAGAA+TGG | 0.476325 | 8.1:+53750319 | MS.gene007821:CDS |
| TAACGCTTTCCTGTGGGTGG+AGG | 0.480468 | 8.1:-53751845 | None:intergenic |
| TTGTATGTTGGTTATAAGGT+TGG | 0.485610 | 8.1:+53749782 | MS.gene007821:CDS |
| CCAATTGGCTGGTAATAAGA+TGG | 0.488090 | 8.1:-53751716 | None:intergenic |
| GCCAGTTCCACTATTAAACT+TGG | 0.495870 | 8.1:-53751690 | None:intergenic |
| TCATCTACCAAGTTTAATAG+TGG | 0.496314 | 8.1:+53751683 | MS.gene007821:CDS |
| AACGCTTTCCTGTGGGTGGA+GGG | 0.537229 | 8.1:-53751844 | None:intergenic |
| GATGATGGCCCTCCACCCAC+AGG | 0.547765 | 8.1:+53751836 | MS.gene007821:CDS |
| GTGTGTTCATGTCTTCAGAC+TGG | 0.547922 | 8.1:+53749837 | MS.gene007821:CDS |
| AATACAGTAACGCTTTCCTG+TGG | 0.564092 | 8.1:-53751852 | None:intergenic |
| GCTGTTTGTGATGCTCATCT+CGG | 0.566492 | 8.1:+53751803 | MS.gene007821:CDS |
| TACTGGAATACCAAAACTGA+AGG | 0.570093 | 8.1:+53751495 | MS.gene007821:CDS |
| AGTTTAATAGTGGAACTGGC+TGG | 0.576163 | 8.1:+53751693 | MS.gene007821:CDS |
| GAACTGAGAGCGCTTTCACT+GGG | 0.579574 | 8.1:+53750388 | MS.gene007821:CDS |
| CAGTAACGCTTTCCTGTGGG+TGG | 0.606893 | 8.1:-53751848 | None:intergenic |
| ATACAGTAACGCTTTCCTGT+GGG | 0.614530 | 8.1:-53751851 | None:intergenic |
| GTGTGTCACAACATATGCAA+TGG | 0.629248 | 8.1:-53751524 | None:intergenic |
| GGACCTGAAGAGTTGTATGT+TGG | 0.631845 | 8.1:+53749770 | MS.gene007821:CDS |
| TTCATGTCTTCAGACTGGAG+TGG | 0.657068 | 8.1:+53749842 | MS.gene007821:CDS |
| ACTGGAATACCAAAACTGAA+GGG | 0.657265 | 8.1:+53751496 | MS.gene007821:CDS |
| GCACAGAGAACTTCTTGGCG+AGG | 0.658340 | 8.1:-53751782 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTATTTTAT+AGG | + | chr8.1:53750184-53750203 | MS.gene007821:intron | 0.0% |
| !! | TATTTATTTAACCAAATATA+TGG | + | chr8.1:53751618-53751637 | MS.gene007821:intron | 10.0% |
| !! | CCTAAAATGAATTAAAAAAA+CGG | - | chr8.1:53751472-53751491 | None:intergenic | 15.0% |
| !! | TTTATTTCCTCAAATTATTA+TGG | + | chr8.1:53750560-53750579 | MS.gene007821:intron | 15.0% |
| !!! | CGTTTTTTTAATTCATTTTA+GGG | + | chr8.1:53751470-53751489 | MS.gene007821:intron | 15.0% |
| !!! | TGTATCAAGTTTTTTATATT+GGG | - | chr8.1:53751229-53751248 | None:intergenic | 15.0% |
| !! | CCTTTAATGTAAAACAAATT+TGG | - | chr8.1:53750731-53750750 | None:intergenic | 20.0% |
| !! | GATATATTATAGTGATATTG+TGG | + | chr8.1:53751380-53751399 | MS.gene007821:intron | 20.0% |
| !! | GCGATAAATTTCAATTAAAT+AGG | - | chr8.1:53750690-53750709 | None:intergenic | 20.0% |
| !! | TTAAATAGGCATAAAAATCA+AGG | - | chr8.1:53750676-53750695 | None:intergenic | 20.0% |
| !! | TTCTATATTTAAAAGAGGTA+AGG | + | chr8.1:53751135-53751154 | MS.gene007821:intron | 20.0% |
| !!! | ATAAAGTACTTACTCAAATA+AGG | - | chr8.1:53751550-53751569 | None:intergenic | 20.0% |
| !!! | ATGAACAATTTTATGTTACT+CGG | + | chr8.1:53750358-53750377 | MS.gene007821:CDS | 20.0% |
| !!! | CCAAATTTGTTTTACATTAA+AGG | + | chr8.1:53750728-53750747 | MS.gene007821:intron | 20.0% |
| !!! | CCGTTTTTTTAATTCATTTT+AGG | + | chr8.1:53751469-53751488 | MS.gene007821:intron | 20.0% |
| !!! | CTCTTTTAAATATAGAACAT+GGG | - | chr8.1:53751132-53751151 | None:intergenic | 20.0% |
| !!! | GTGTATCAAGTTTTTTATAT+TGG | - | chr8.1:53751230-53751249 | None:intergenic | 20.0% |
| !!! | TAAAGTACTTACTCAAATAA+GGG | - | chr8.1:53751549-53751568 | None:intergenic | 20.0% |
| ! | AAATACATTTAACGTGTAGA+GGG | + | chr8.1:53749937-53749956 | MS.gene007821:intron | 25.0% |
| ! | AGCGAATAAAATTCTTTAAC+CGG | - | chr8.1:53750770-53750789 | None:intergenic | 25.0% |
| ! | ATCCTTGTATATTTCATTTC+AGG | - | chr8.1:53751041-53751060 | None:intergenic | 25.0% |
| ! | CCATGTTCTATATTTAAAAG+AGG | + | chr8.1:53751130-53751149 | MS.gene007821:intron | 25.0% |
| ! | CTCAAAGATTTATAATCAAC+AGG | - | chr8.1:53750309-53750328 | None:intergenic | 25.0% |
| ! | TACCTGAAATGAAATATACA+AGG | + | chr8.1:53751036-53751055 | MS.gene007821:intron | 25.0% |
| ! | TCTACACGTTAAATGTATTT+CGG | - | chr8.1:53749937-53749956 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTATAAAGAG+AGG | + | chr8.1:53751161-53751180 | MS.gene007821:intron | 25.0% |
| !! | AAACTTCCATCTTTTAAATG+TGG | - | chr8.1:53750820-53750839 | None:intergenic | 25.0% |
| !! | ATTTTATGTTACTCGGAAAA+AGG | + | chr8.1:53750365-53750384 | MS.gene007821:CDS | 25.0% |
| !! | CCTCTTTTAAATATAGAACA+TGG | - | chr8.1:53751133-53751152 | None:intergenic | 25.0% |
| !! | TTTTATGTTACTCGGAAAAA+GGG | + | chr8.1:53750366-53750385 | MS.gene007821:CDS | 25.0% |
| !!! | TTGTTTTACATTAAAGGACA+TGG | + | chr8.1:53750734-53750753 | MS.gene007821:intron | 25.0% |
| AATACATTTAACGTGTAGAG+GGG | + | chr8.1:53749938-53749957 | MS.gene007821:intron | 30.0% | |
| AATACCATATCTTGTGACTA+AGG | + | chr8.1:53751325-53751344 | MS.gene007821:intron | 30.0% | |
| AATCTTTGAGTGATGAAGAA+TGG | + | chr8.1:53750319-53750338 | MS.gene007821:CDS | 30.0% | |
| ATTAAACTTGGTAGATGATC+TGG | - | chr8.1:53751681-53751700 | None:intergenic | 30.0% | |
| GAAATACATTTAACGTGTAG+AGG | + | chr8.1:53749936-53749955 | MS.gene007821:intron | 30.0% | |
| GAACAAAACTGCAATCAATA+AGG | - | chr8.1:53750850-53750869 | None:intergenic | 30.0% | |
| GATGATTCAAGCCATATATT+TGG | - | chr8.1:53751632-53751651 | None:intergenic | 30.0% | |
| TAAACCTTAGTCACAAGATA+TGG | - | chr8.1:53751332-53751351 | None:intergenic | 30.0% | |
| TCATCTACCAAGTTTAATAG+TGG | + | chr8.1:53751683-53751702 | MS.gene007821:CDS | 30.0% | |
| TGATCGATATATATACGCTT+TGG | + | chr8.1:53750239-53750258 | MS.gene007821:intron | 30.0% | |
| TTGATGCCACATTTAAAAGA+TGG | + | chr8.1:53750811-53750830 | MS.gene007821:intron | 30.0% | |
| ! | AGAGTTGTATGTTGGTTATA+AGG | + | chr8.1:53749778-53749797 | MS.gene007821:CDS | 30.0% |
| ! | GATTTCACATTTTTGCCAAT+TGG | - | chr8.1:53751734-53751753 | None:intergenic | 30.0% |
| ! | TTGTATGTTGGTTATAAGGT+TGG | + | chr8.1:53749782-53749801 | MS.gene007821:CDS | 30.0% |
| !! | CTTGCTGTTGATAATTGATT+GGG | + | chr8.1:53749894-53749913 | MS.gene007821:intron | 30.0% |
| !! | TAATTCATTTTAGGGAGTAC+TGG | + | chr8.1:53751478-53751497 | MS.gene007821:intron | 30.0% |
| !!! | CTCTATGCTATTTTTAGTGA+TGG | + | chr8.1:53749986-53750005 | MS.gene007821:intron | 30.0% |
| AAAGCACAGAAAGAAGTTGT+TGG | - | chr8.1:53750274-53750293 | None:intergenic | 35.0% | |
| ACAGAAAGAAGTTGTTGGAT+TGG | - | chr8.1:53750269-53750288 | None:intergenic | 35.0% | |
| ACTGGAATACCAAAACTGAA+GGG | + | chr8.1:53751496-53751515 | MS.gene007821:CDS | 35.0% | |
| AGAGTAACAAGCAAGTCAAA+AGG | - | chr8.1:53750639-53750658 | None:intergenic | 35.0% | |
| CCAAGGTCCATAATAATTTG+AGG | - | chr8.1:53750570-53750589 | None:intergenic | 35.0% | |
| CCTCAAATTATTATGGACCT+TGG | + | chr8.1:53750567-53750586 | MS.gene007821:intron | 35.0% | |
| TAACCAACATACAACTCTTC+AGG | - | chr8.1:53749776-53749795 | None:intergenic | 35.0% | |
| TACTGGAATACCAAAACTGA+AGG | + | chr8.1:53751495-53751514 | MS.gene007821:CDS | 35.0% | |
| TGATATTGTGGTATGATTGC+TGG | + | chr8.1:53751392-53751411 | MS.gene007821:intron | 35.0% | |
| TGGTGTCCATATATGATTCA+GGG | + | chr8.1:53751289-53751308 | MS.gene007821:intron | 35.0% | |
| ! | ACCAAGTTTAATAGTGGAAC+TGG | + | chr8.1:53751689-53751708 | MS.gene007821:CDS | 35.0% |
| ! | TATGTTGGTTATAAGGTTGG+TGG | + | chr8.1:53749785-53749804 | MS.gene007821:CDS | 35.0% |
| ! | TCATTTCAGGTATTAACCAC+AGG | - | chr8.1:53751028-53751047 | None:intergenic | 35.0% |
| ! | TTGGTGTCCATATATGATTC+AGG | + | chr8.1:53751288-53751307 | MS.gene007821:intron | 35.0% |
| ! | TTTTAGTGATGGTAGTAGCA+AGG | + | chr8.1:53749997-53750016 | MS.gene007821:intron | 35.0% |
| !! | ATCACTTTAGAGTACCAACA+TGG | - | chr8.1:53751363-53751382 | None:intergenic | 35.0% |
| !! | GCTTGCTGTTGATAATTGAT+TGG | + | chr8.1:53749893-53749912 | MS.gene007821:intron | 35.0% |
| !!! | AGTTTTCTAGTTCTCACCAT+TGG | + | chr8.1:53750915-53750934 | MS.gene007821:intron | 35.0% |
| AAACAGCACAGAGAACTTCT+TGG | - | chr8.1:53751790-53751809 | None:intergenic | 40.0% | |
| AACTTCTTTCTGTGCTTTGC+AGG | + | chr8.1:53750276-53750295 | MS.gene007821:intron | 40.0% | |
| AATACAGTAACGCTTTCCTG+TGG | - | chr8.1:53751855-53751874 | None:intergenic | 40.0% | |
| AATACCTGCAGTGTCACATA+CGG | + | chr8.1:53750151-53750170 | MS.gene007821:intron | 40.0% | |
| ACCTTGCCCTGAATCATATA+TGG | - | chr8.1:53751298-53751317 | None:intergenic | 40.0% | |
| AGACAACAGACAAAACACCA+AGG | - | chr8.1:53750587-53750606 | None:intergenic | 40.0% | |
| ATACAGTAACGCTTTCCTGT+GGG | - | chr8.1:53751854-53751873 | None:intergenic | 40.0% | |
| ATATGATTCAGGGCAAGGTA+AGG | + | chr8.1:53751299-53751318 | MS.gene007821:intron | 40.0% | |
| CCAATTGGCTGGTAATAAGA+TGG | - | chr8.1:53751719-53751738 | None:intergenic | 40.0% | |
| CCATCTTATTACCAGCCAAT+TGG | + | chr8.1:53751716-53751735 | MS.gene007821:CDS | 40.0% | |
| CTCACTAAAGTAGCTACTTC+TGG | + | chr8.1:53750884-53750903 | MS.gene007821:intron | 40.0% | |
| GCCAGTTCCACTATTAAACT+TGG | - | chr8.1:53751693-53751712 | None:intergenic | 40.0% | |
| GGTTTACTTCTGTACCATGT+TGG | + | chr8.1:53751346-53751365 | MS.gene007821:intron | 40.0% | |
| GTGTGTCACAACATATGCAA+TGG | - | chr8.1:53751527-53751546 | None:intergenic | 40.0% | |
| TCCATATATGATTCAGGGCA+AGG | + | chr8.1:53751294-53751313 | MS.gene007821:intron | 40.0% | |
| TGTTCATTGTATGTCACCTG+TGG | + | chr8.1:53751009-53751028 | MS.gene007821:intron | 40.0% | |
| ! | AGTTTAATAGTGGAACTGGC+TGG | + | chr8.1:53751693-53751712 | MS.gene007821:CDS | 40.0% |
| ! | ATGGTAAGTCCCTTCAGTTT+TGG | - | chr8.1:53751508-53751527 | None:intergenic | 40.0% |
| ! | CACTGGGTGAGTTTAAGATT+GGG | + | chr8.1:53750404-53750423 | MS.gene007821:intron | 40.0% |
| ! | CTCGGACACATTTTTGATGA+TGG | + | chr8.1:53751821-53751840 | MS.gene007821:CDS | 40.0% |
| ! | GAAAGAAGTTGTTGGATTGG+AGG | - | chr8.1:53750266-53750285 | None:intergenic | 40.0% |
| ! | GTTTTGTCTGTTGTCTGTGT+TGG | + | chr8.1:53750591-53750610 | MS.gene007821:intron | 40.0% |
| ! | TCACATTTTTGCCAATTGGC+TGG | - | chr8.1:53751730-53751749 | None:intergenic | 40.0% |
| ! | TCACTGGGTGAGTTTAAGAT+TGG | + | chr8.1:53750403-53750422 | MS.gene007821:intron | 40.0% |
| !! | CCTTACAAAACCGACTTGAA+AGG | - | chr8.1:53751196-53751215 | None:intergenic | 40.0% |
| !! | CCTTTCAAGTCGGTTTTGTA+AGG | + | chr8.1:53751193-53751212 | MS.gene007821:intron | 40.0% |
| !! | GTGCACTTGGCTTTAATACT+TGG | + | chr8.1:53751269-53751288 | MS.gene007821:intron | 40.0% |
| ACAAGCAAGTCAAAAGGCCA+TGG | - | chr8.1:53750633-53750652 | None:intergenic | 45.0% | |
| ACATTTAACGTGTAGAGGGG+TGG | + | chr8.1:53749941-53749960 | MS.gene007821:intron | 45.0% | |
| ACCAAGCACAAGAGATGCTA+AGG | - | chr8.1:53750042-53750061 | None:intergenic | 45.0% | |
| GATGGTAGTAGCAAGGTGTA+TGG | + | chr8.1:53750004-53750023 | MS.gene007821:intron | 45.0% | |
| GCAATCTGTGTGATGTCCAT+TGG | - | chr8.1:53750941-53750960 | None:intergenic | 45.0% | |
| GCTGTTTGTGATGCTCATCT+CGG | + | chr8.1:53751803-53751822 | MS.gene007821:CDS | 45.0% | |
| GGACCTGAAGAGTTGTATGT+TGG | + | chr8.1:53749770-53749789 | MS.gene007821:CDS | 45.0% | |
| GTGTGTTCATGTCTTCAGAC+TGG | + | chr8.1:53749837-53749856 | MS.gene007821:CDS | 45.0% | |
| TAGTTCTCACCATTGGCCAA+TGG | + | chr8.1:53750922-53750941 | MS.gene007821:intron | 45.0% | |
| TCCTTAGCATCTCTTGTGCT+TGG | + | chr8.1:53750038-53750057 | MS.gene007821:intron | 45.0% | |
| TTCATGTCTTCAGACTGGAG+TGG | + | chr8.1:53749842-53749861 | MS.gene007821:CDS | 45.0% | |
| AACACCGTATGTGACACTGC+AGG | - | chr8.1:53750158-53750177 | None:intergenic | 50.0% | |
| AGGCCATGGTAACACGACTT+TGG | - | chr8.1:53750619-53750638 | None:intergenic | 50.0% | |
| CAGACTGGAGTGGAGTTAAC+AGG | + | chr8.1:53749852-53749871 | MS.gene007821:CDS | 50.0% | |
| GAGTCAGTTTCGTGTGCACT+TGG | + | chr8.1:53751256-53751275 | MS.gene007821:intron | 50.0% | |
| GAGTGGAGTTAACAGGTGTG+GGG | + | chr8.1:53749859-53749878 | MS.gene007821:intron | 50.0% | |
| GGAGTGGAGTTAACAGGTGT+GGG | + | chr8.1:53749858-53749877 | MS.gene007821:intron | 50.0% | |
| GTGCCAAAGTCGTGTTACCA+TGG | + | chr8.1:53750613-53750632 | MS.gene007821:intron | 50.0% | |
| GTGTGATGTCCATTGGCCAA+TGG | - | chr8.1:53750934-53750953 | None:intergenic | 50.0% | |
| TGGAGTGGAGTTAACAGGTG+TGG | + | chr8.1:53749857-53749876 | MS.gene007821:intron | 50.0% | |
| !! | AAACCGACTTGAAAGGCGAC+AGG | - | chr8.1:53751189-53751208 | None:intergenic | 50.0% |
| !! | GAACTGAGAGCGCTTTCACT+GGG | + | chr8.1:53750388-53750407 | MS.gene007821:CDS | 50.0% |
| AACGCTTTCCTGTGGGTGGA+GGG | - | chr8.1:53751847-53751866 | None:intergenic | 55.0% | |
| CAGTAACGCTTTCCTGTGGG+TGG | - | chr8.1:53751851-53751870 | None:intergenic | 55.0% | |
| GCACAGAGAACTTCTTGGCG+AGG | - | chr8.1:53751785-53751804 | None:intergenic | 55.0% | |
| GTGAGTATGCGCAAGCGAAC+AGG | - | chr8.1:53751591-53751610 | None:intergenic | 55.0% | |
| TAACGCTTTCCTGTGGGTGG+AGG | - | chr8.1:53751848-53751867 | None:intergenic | 55.0% | |
| ! | GCACCTGTCGCCTTTCAAGT+CGG | + | chr8.1:53751183-53751202 | MS.gene007821:intron | 55.0% |
| !! | AGGACATGGTGCTGCATAGC+CGG | + | chr8.1:53750748-53750767 | MS.gene007821:intron | 55.0% |
| !! | GGAACTGAGAGCGCTTTCAC+TGG | + | chr8.1:53750387-53750406 | MS.gene007821:CDS | 55.0% |
| AACGTGTAGAGGGGTGGTGC+TGG | + | chr8.1:53749947-53749966 | MS.gene007821:intron | 60.0% | |
| ! | GATGATGGCCCTCCACCCAC+AGG | + | chr8.1:53751836-53751855 | MS.gene007821:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 53749768 | 53751880 | 53749768 | ID=MS.gene007821 |
| chr8.1 | mRNA | 53749768 | 53751880 | 53749768 | ID=MS.gene007821.t1;Parent=MS.gene007821 |
| chr8.1 | exon | 53749768 | 53749873 | 53749768 | ID=MS.gene007821.t1.exon1;Parent=MS.gene007821.t1 |
| chr8.1 | CDS | 53749768 | 53749873 | 53749768 | ID=cds.MS.gene007821.t1;Parent=MS.gene007821.t1 |
| chr8.1 | exon | 53750298 | 53750409 | 53750298 | ID=MS.gene007821.t1.exon2;Parent=MS.gene007821.t1 |
| chr8.1 | CDS | 53750298 | 53750409 | 53750298 | ID=cds.MS.gene007821.t1;Parent=MS.gene007821.t1 |
| chr8.1 | exon | 53751491 | 53751556 | 53751491 | ID=MS.gene007821.t1.exon3;Parent=MS.gene007821.t1 |
| chr8.1 | CDS | 53751491 | 53751556 | 53751491 | ID=cds.MS.gene007821.t1;Parent=MS.gene007821.t1 |
| chr8.1 | exon | 53751682 | 53751880 | 53751682 | ID=MS.gene007821.t1.exon4;Parent=MS.gene007821.t1 |
| chr8.1 | CDS | 53751682 | 53751880 | 53751682 | ID=cds.MS.gene007821.t1;Parent=MS.gene007821.t1 |
| Gene Sequence |
| Protein sequence |
