Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30166.t1 | XP_003600075.1 | 96 | 202 | 8 | 0 | 1 | 202 | 1 | 202 | 3.90E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30166.t1 | Q9SEC2 | 78.9 | 204 | 41 | 2 | 1 | 202 | 56 | 259 | 2.7e-90 | 332.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30166.t1 | G7IXM5 | 96.0 | 202 | 8 | 0 | 1 | 202 | 1 | 202 | 2.8e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032356 | MS.gene30166 | PPI |
| MS.gene30166 | MS.gene32271 | PPI |
| MS.gene44259 | MS.gene30166 | PPI |
| MS.gene017651 | MS.gene30166 | PPI |
| MS.gene30166 | MS.gene38969 | PPI |
| MS.gene82727 | MS.gene30166 | PPI |
| MS.gene89646 | MS.gene30166 | PPI |
| MS.gene007821 | MS.gene30166 | PPI |
| MS.gene012096 | MS.gene30166 | PPI |
| MS.gene027087 | MS.gene30166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30166.t1 | MTR_3g051460 | 96.040 | 202 | 8 | 0 | 1 | 202 | 1 | 202 | 1.54e-147 | 408 |
| MS.gene30166.t1 | MTR_3g051460 | 95.918 | 196 | 8 | 0 | 7 | 202 | 42 | 237 | 2.28e-142 | 396 |
| MS.gene30166.t1 | MTR_3g051460 | 96.757 | 185 | 6 | 0 | 18 | 202 | 1 | 185 | 1.27e-134 | 375 |
| MS.gene30166.t1 | MTR_5g092680 | 81.188 | 202 | 38 | 0 | 1 | 202 | 1 | 202 | 7.40e-127 | 356 |
| MS.gene30166.t1 | MTR_5g092680 | 81.188 | 202 | 38 | 0 | 1 | 202 | 63 | 264 | 2.19e-126 | 357 |
| MS.gene30166.t1 | MTR_5g092680 | 81.188 | 202 | 38 | 0 | 1 | 202 | 64 | 265 | 2.27e-126 | 357 |
| MS.gene30166.t1 | MTR_3g075380 | 65.054 | 186 | 56 | 2 | 19 | 202 | 18 | 196 | 3.36e-81 | 240 |
| MS.gene30166.t1 | MTR_8g076060 | 40.244 | 164 | 93 | 2 | 22 | 184 | 37 | 196 | 3.90e-29 | 108 |
| MS.gene30166.t1 | MTR_8g076060 | 41.290 | 155 | 86 | 2 | 22 | 175 | 37 | 187 | 5.93e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30166.t1 | AT5G61640 | 75.743 | 202 | 49 | 0 | 1 | 202 | 1 | 202 | 2.65e-118 | 334 |
| MS.gene30166.t1 | AT5G61640 | 75.743 | 202 | 49 | 0 | 1 | 202 | 28 | 229 | 5.98e-118 | 334 |
| MS.gene30166.t1 | AT5G07470 | 75.743 | 202 | 49 | 0 | 1 | 202 | 1 | 202 | 6.16e-116 | 328 |
| MS.gene30166.t1 | AT4G25130 | 75.248 | 202 | 48 | 1 | 3 | 202 | 57 | 258 | 4.76e-115 | 328 |
| MS.gene30166.t1 | AT5G07460 | 72.973 | 185 | 50 | 0 | 18 | 202 | 34 | 218 | 1.35e-104 | 300 |
| MS.gene30166.t1 | AT2G18030 | 37.278 | 169 | 96 | 3 | 11 | 178 | 33 | 192 | 4.78e-29 | 107 |
| MS.gene30166.t1 | AT2G18030 | 36.905 | 168 | 96 | 3 | 11 | 177 | 33 | 191 | 7.89e-29 | 108 |
Find 73 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACTCTGCTTGATGCATTC+TGG | 0.199465 | 3.3:-42803110 | MS.gene30166:CDS |
| CGTGCTGCTTTCTCTTGTTC+GGG | 0.204283 | 3.3:+42801937 | None:intergenic |
| AGTTTGGTGCCGGCTGCTTT+TGG | 0.217005 | 3.3:-42803296 | MS.gene30166:CDS |
| AAAAGCAGCCGGCACCAAAC+TGG | 0.267452 | 3.3:+42803298 | None:intergenic |
| TTCTGCCCTGTAGAACTTCT+TGG | 0.277331 | 3.3:+42801852 | None:intergenic |
| TCGTGCTGCTTTCTCTTGTT+CGG | 0.281556 | 3.3:+42801936 | None:intergenic |
| TTGGCCTTCCAGAGAGTGGC+TGG | 0.314520 | 3.3:-42803264 | MS.gene30166:CDS |
| CTGGAGAAAGGTGGCCGATT+TGG | 0.315131 | 3.3:-42801811 | MS.gene30166:CDS |
| GAACACACATCTTGATATCT+TGG | 0.327701 | 3.3:+42803195 | None:intergenic |
| TGTACTTGCTGAACAGGCTT+TGG | 0.346259 | 3.3:-42803410 | MS.gene30166:CDS |
| GTCTCATAGCTACATTCTTT+AGG | 0.347638 | 3.3:+42803129 | None:intergenic |
| CTTTCTCCAGGTATTGTTGA+TGG | 0.353398 | 3.3:+42801824 | None:intergenic |
| AGATATCAAGATGTGTGTTC+AGG | 0.353710 | 3.3:-42803192 | MS.gene30166:CDS |
| GAAAGCAGCACGAGAGTCAT+TGG | 0.362829 | 3.3:-42801926 | MS.gene30166:CDS |
| TGGTCACCCCAGCCACTCTC+TGG | 0.380270 | 3.3:+42803256 | None:intergenic |
| GGTCAACAGTTTGCCCAGTT+TGG | 0.387478 | 3.3:-42803312 | MS.gene30166:CDS |
| ACTCCATGTACTTGCTGAAC+AGG | 0.398338 | 3.3:-42803416 | None:intergenic |
| GACTCTGCTTGATGCATTCT+GGG | 0.410092 | 3.3:-42803109 | MS.gene30166:CDS |
| TGTGCTGGTGTGTCGTCATC+TGG | 0.412523 | 3.3:+42803336 | None:intergenic |
| CAGTTTGCCCAGTTTGGTGC+CGG | 0.427814 | 3.3:-42803306 | MS.gene30166:CDS |
| TACATTCTTTAGGATCATAC+TGG | 0.446860 | 3.3:+42803139 | None:intergenic |
| TTCCTGCCAAGAAGTTCTAC+AGG | 0.447953 | 3.3:-42801858 | MS.gene30166:CDS |
| AACAACAAAAGAAATTAAAC+AGG | 0.455229 | 3.3:-42801900 | MS.gene30166:CDS |
| GCTATAACCAACCTCGGTCT+TGG | 0.457937 | 3.3:+42803236 | None:intergenic |
| GACAACCTCCGAATGTTTCG+TGG | 0.458852 | 3.3:+42803167 | None:intergenic |
| GGCCTTCCAGAGAGTGGCTG+GGG | 0.462476 | 3.3:-42803262 | MS.gene30166:CDS |
| TTGCTGAACAGGCTTTGGTT+TGG | 0.469365 | 3.3:-42803405 | MS.gene30166:CDS |
| GACCGAGGTTGGTTATAGCC+AGG | 0.476421 | 3.3:-42803232 | MS.gene30166:CDS |
| CACAAGGGCAACAGAAAAGA+TGG | 0.479400 | 3.3:-42803379 | MS.gene30166:CDS |
| GATATCAAGATGTGTGTTCA+GGG | 0.493618 | 3.3:-42803191 | MS.gene30166:CDS |
| TTCAGGGACCACGAAACATT+CGG | 0.501634 | 3.3:-42803175 | MS.gene30166:CDS |
| AAAGCAGCCGGCACCAAACT+GGG | 0.502577 | 3.3:+42803299 | None:intergenic |
| AAGATTGTTTGCGACCAAAT+CGG | 0.505454 | 3.3:+42801797 | None:intergenic |
| AAGCCTGTTCAGCAAGTACA+TGG | 0.508074 | 3.3:+42803413 | None:intergenic |
| TGGCCTTCCAGAGAGTGGCT+GGG | 0.510352 | 3.3:-42803263 | MS.gene30166:CDS |
| CAAATCGGCCACCTTTCTCC+AGG | 0.525303 | 3.3:+42801812 | None:intergenic |
| GTGGGAACACAATACAGGTC+TGG | 0.528212 | 3.3:-42801976 | MS.gene30166:CDS |
| GCCCTGTAGAACTTCTTGGC+AGG | 0.528426 | 3.3:+42801856 | None:intergenic |
| TCGCAAACAATCTTCTTCCA+AGG | 0.528915 | 3.3:-42801788 | MS.gene30166:CDS |
| ATGATGTGGGAACACAATAC+AGG | 0.528961 | 3.3:-42801981 | MS.gene30166:CDS |
| GGCTTTGGTTTGGTAGCACA+AGG | 0.529532 | 3.3:-42803395 | MS.gene30166:CDS |
| GATAGGATCATTGCATCCCT+TGG | 0.530306 | 3.3:+42801771 | None:intergenic |
| GCAAACTGTTGACCTTGTGC+TGG | 0.531032 | 3.3:+42803321 | None:intergenic |
| GTGCTGCTTTCTCTTGTTCG+GGG | 0.536034 | 3.3:+42801938 | None:intergenic |
| CGCAAACAATCTTCTTCCAA+GGG | 0.544080 | 3.3:-42801787 | MS.gene30166:CDS |
| TTGGATTATGCAAAAGCCCC+TGG | 0.547903 | 3.3:+42803214 | None:intergenic |
| CACCCCAGCCACTCTCTGGA+AGG | 0.549984 | 3.3:+42803260 | None:intergenic |
| AATGATCCTATCCGATGCTA+TGG | 0.554839 | 3.3:-42801760 | MS.gene30166:CDS |
| ACCGAGGTTGGTTATAGCCA+GGG | 0.563920 | 3.3:-42803231 | MS.gene30166:CDS |
| TGTAGAACTTCTTGGCAGGA+AGG | 0.563929 | 3.3:+42801860 | None:intergenic |
| TGCTGCTTTCTCTTGTTCGG+GGG | 0.568805 | 3.3:+42801939 | None:intergenic |
| CTCGACACTCCAAAAGCAGC+CGG | 0.569968 | 3.3:+42803287 | None:intergenic |
| TCCTACCACACTGAATCGAC+AGG | 0.574090 | 3.3:-42803076 | MS.gene30166:intron |
| CGAGTTGGCCTTCCAGAGAG+TGG | 0.574524 | 3.3:-42803268 | MS.gene30166:CDS |
| AGAGTACCATCAACAATACC+TGG | 0.582214 | 3.3:-42801830 | MS.gene30166:CDS |
| CATCAACAATACCTGGAGAA+AGG | 0.582347 | 3.3:-42801823 | MS.gene30166:CDS |
| CCCCTGGCTATAACCAACCT+CGG | 0.587062 | 3.3:+42803230 | None:intergenic |
| TATGTAACAGGGGAATGATG+TGG | 0.588868 | 3.3:-42801995 | MS.gene30166:intron |
| GTCATCTGGTCCTTGAGCAA+TGG | 0.592868 | 3.3:+42803350 | None:intergenic |
| AATTAACCATAGCATCGGAT+AGG | 0.594798 | 3.3:+42801754 | None:intergenic |
| ATGGATTCATCCATTGCTCA+AGG | 0.603472 | 3.3:-42803360 | MS.gene30166:CDS |
| CCGAGGTTGGTTATAGCCAG+GGG | 0.603648 | 3.3:-42803230 | MS.gene30166:CDS |
| ATGTAACAGGGGAATGATGT+GGG | 0.611905 | 3.3:-42801994 | MS.gene30166:intron |
| ATATTAATTAACCATAGCAT+CGG | 0.613406 | 3.3:+42801749 | None:intergenic |
| GGGGTGACCAAGACCGAGGT+TGG | 0.615083 | 3.3:-42803243 | MS.gene30166:CDS |
| ACCTGTCGATTCAGTGTGGT+AGG | 0.630161 | 3.3:+42803075 | None:intergenic |
| GGCTGGGGTGACCAAGACCG+AGG | 0.651086 | 3.3:-42803247 | MS.gene30166:CDS |
| CAACAATACCTGGAGAAAGG+TGG | 0.652332 | 3.3:-42801820 | MS.gene30166:CDS |
| GATGACGACACACCAGCACA+AGG | 0.675576 | 3.3:-42803333 | MS.gene30166:CDS |
| TCCTGCCAAGAAGTTCTACA+GGG | 0.678900 | 3.3:-42801857 | MS.gene30166:CDS |
| GCTTTGGTTTGGTAGCACAA+GGG | 0.692725 | 3.3:-42803394 | MS.gene30166:CDS |
| AGGGACCACGAAACATTCGG+AGG | 0.711234 | 3.3:-42803172 | MS.gene30166:CDS |
| ATGTACCTGTCGATTCAGTG+TGG | 0.737036 | 3.3:+42803071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAAAAATAAGATTTGT+AGG | + | chr3.3:42802526-42802545 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATTGAATTGATC+TGG | - | chr3.3:42802159-42802178 | MS.gene30166:intron | 15.0% |
| !!! | TACATATAAAGTTTGTTATT+TGG | - | chr3.3:42802114-42802133 | MS.gene30166:intron | 15.0% |
| !!! | TTTTTGTTTCTTAACAATTA+AGG | - | chr3.3:42802279-42802298 | MS.gene30166:intron | 15.0% |
| !! | AACAAACAAGTATTAGAAAA+TGG | + | chr3.3:42802345-42802364 | None:intergenic | 20.0% |
| !! | AACAACAAAAGAAATTAAAC+AGG | - | chr3.3:42803267-42803286 | MS.gene30166:CDS | 20.0% |
| !! | AAGATCAAAAGGTTATTTAT+CGG | + | chr3.3:42803150-42803169 | None:intergenic | 20.0% |
| !! | GATTCATTAAAATGATTTAG+CGG | + | chr3.3:42802781-42802800 | None:intergenic | 20.0% |
| ! | AACAAAATTGACAAAAAGAG+TGG | + | chr3.3:42802828-42802847 | None:intergenic | 25.0% |
| ! | AATAAGATTTGTAGGTGTAA+TGG | + | chr3.3:42802518-42802537 | None:intergenic | 25.0% |
| ! | AATGACAAAACATAAGTGTT+CGG | + | chr3.3:42802854-42802873 | None:intergenic | 25.0% |
| ! | ACTTTGGATTATCAATGTAT+TGG | - | chr3.3:42802256-42802275 | MS.gene30166:intron | 25.0% |
| ! | ATGAGATTCATGTTCAAAAT+CGG | + | chr3.3:42802711-42802730 | None:intergenic | 25.0% |
| ! | TGTTACATAGAAAGATCAAA+AGG | + | chr3.3:42803161-42803180 | None:intergenic | 25.0% |
| ! | TTTGATCTTTCTATGTAACA+GGG | - | chr3.3:42803161-42803180 | MS.gene30166:CDS | 25.0% |
| !! | AAAAGGTTATTTATCGGTTA+AGG | + | chr3.3:42803144-42803163 | None:intergenic | 25.0% |
| !! | CTGATCTTGAATTTTATTCT+TGG | - | chr3.3:42802233-42802252 | MS.gene30166:intron | 25.0% |
| !! | TGAATTTTATTCTTGGACTT+TGG | - | chr3.3:42802240-42802259 | MS.gene30166:intron | 25.0% |
| !! | TTTTGATCTTTCTATGTAAC+AGG | - | chr3.3:42803160-42803179 | MS.gene30166:CDS | 25.0% |
| !!! | TAGAAAATGGTTAACTTGTT+TGG | + | chr3.3:42802332-42802351 | None:intergenic | 25.0% |
| AATAAAACTTGTGAACGTCT+AGG | - | chr3.3:42802920-42802939 | MS.gene30166:intron | 30.0% | |
| AATGAATCACTATCGAAACT+TGG | - | chr3.3:42802793-42802812 | MS.gene30166:intron | 30.0% | |
| ATTTGAACATCAAAACGAAC+CGG | + | chr3.3:42803062-42803081 | None:intergenic | 30.0% | |
| GGTTCATCACATAATGTATT+GGG | + | chr3.3:42802741-42802760 | None:intergenic | 30.0% | |
| GTATATTCGAAGTTCATACA+TGG | + | chr3.3:42803089-42803108 | None:intergenic | 30.0% | |
| TAATACTTGTTTGTTCGATG+AGG | - | chr3.3:42802350-42802369 | MS.gene30166:intron | 30.0% | |
| TGGTTCATCACATAATGTAT+TGG | + | chr3.3:42802742-42802761 | None:intergenic | 30.0% | |
| TTGATCTTTCTATGTAACAG+GGG | - | chr3.3:42803162-42803181 | MS.gene30166:CDS | 30.0% | |
| !! | AAAATGGTTAACTTGTTTGG+AGG | + | chr3.3:42802329-42802348 | None:intergenic | 30.0% |
| !! | TACATTCTTTAGGATCATAC+TGG | + | chr3.3:42802031-42802050 | None:intergenic | 30.0% |
| !! | TAGACGTTCACAAGTTTTAT+TGG | + | chr3.3:42802921-42802940 | None:intergenic | 30.0% |
| AAGATTGTTTGCGACCAAAT+CGG | + | chr3.3:42803373-42803392 | None:intergenic | 35.0% | |
| ACTAGTTCGATATGGAATCA+TGG | - | chr3.3:42802946-42802965 | MS.gene30166:intron | 35.0% | |
| AGATATCAAGATGTGTGTTC+AGG | - | chr3.3:42801975-42801994 | MS.gene30166:CDS | 35.0% | |
| GAACACACATCTTGATATCT+TGG | + | chr3.3:42801975-42801994 | None:intergenic | 35.0% | |
| GATATCAAGATGTGTGTTCA+GGG | - | chr3.3:42801976-42801995 | MS.gene30166:CDS | 35.0% | |
| GTCTCATAGCTACATTCTTT+AGG | + | chr3.3:42802041-42802060 | None:intergenic | 35.0% | |
| TCAAAATCGGTACAAACTAG+AGG | + | chr3.3:42802698-42802717 | None:intergenic | 35.0% | |
| !!! | ACGTTCACAAGTTTTATTGG+AGG | + | chr3.3:42802918-42802937 | None:intergenic | 35.0% |
| AATGATCCTATCCGATGCTA+TGG | - | chr3.3:42803407-42803426 | MS.gene30166:CDS | 40.0% | |
| AATGGTATGTATCAGTCGCA+TGG | + | chr3.3:42802500-42802519 | None:intergenic | 40.0% | |
| ATGATGTGGGAACACAATAC+AGG | - | chr3.3:42803186-42803205 | MS.gene30166:CDS | 40.0% | |
| ATGGATTCATCCATTGCTCA+AGG | - | chr3.3:42801807-42801826 | MS.gene30166:CDS | 40.0% | |
| ATGTAACAGGGGAATGATGT+GGG | - | chr3.3:42803173-42803192 | MS.gene30166:CDS | 40.0% | |
| CATCAACAATACCTGGAGAA+AGG | - | chr3.3:42803344-42803363 | MS.gene30166:CDS | 40.0% | |
| CGCAAACAATCTTCTTCCAA+GGG | - | chr3.3:42803380-42803399 | MS.gene30166:CDS | 40.0% | |
| CTAGGCTAACTAGTTCGATA+TGG | - | chr3.3:42802938-42802957 | MS.gene30166:intron | 40.0% | |
| GTTAAGGCAAAGAGTGAATG+AGG | + | chr3.3:42803128-42803147 | None:intergenic | 40.0% | |
| TATGTAACAGGGGAATGATG+TGG | - | chr3.3:42803172-42803191 | MS.gene30166:CDS | 40.0% | |
| TCGCAAACAATCTTCTTCCA+AGG | - | chr3.3:42803379-42803398 | MS.gene30166:CDS | 40.0% | |
| TGACTCTGATCAAGTGACAA+AGG | + | chr3.3:42802999-42803018 | None:intergenic | 40.0% | |
| TGCTTGAAGGGAAGAATTGA+AGG | + | chr3.3:42803028-42803047 | None:intergenic | 40.0% | |
| ! | AACTTGTTTGGAGGAGTCAT+TGG | + | chr3.3:42802320-42802339 | None:intergenic | 40.0% |
| ! | AGAGTACCATCAACAATACC+TGG | - | chr3.3:42803337-42803356 | MS.gene30166:CDS | 40.0% |
| ! | CTTTCTCCAGGTATTGTTGA+TGG | + | chr3.3:42803346-42803365 | None:intergenic | 40.0% |
| AGACTCTGCTTGATGCATTC+TGG | - | chr3.3:42802057-42802076 | MS.gene30166:intron | 45.0% | |
| CAACAATACCTGGAGAAAGG+TGG | - | chr3.3:42803347-42803366 | MS.gene30166:CDS | 45.0% | |
| CACAAGGGCAACAGAAAAGA+TGG | - | chr3.3:42801788-42801807 | MS.gene30166:CDS | 45.0% | |
| GACTCTGCTTGATGCATTCT+GGG | - | chr3.3:42802058-42802077 | MS.gene30166:intron | 45.0% | |
| GATAGGATCATTGCATCCCT+TGG | + | chr3.3:42803399-42803418 | None:intergenic | 45.0% | |
| GTGAACTCACACAAAGCAAC+AGG | + | chr3.3:42802568-42802587 | None:intergenic | 45.0% | |
| TATGTATCAGTCGCATGGCT+TGG | + | chr3.3:42802495-42802514 | None:intergenic | 45.0% | |
| TCAAAACGAACCGGCAAAAG+CGG | + | chr3.3:42803053-42803072 | None:intergenic | 45.0% | |
| TCCTGCCAAGAAGTTCTACA+GGG | - | chr3.3:42803310-42803329 | MS.gene30166:CDS | 45.0% | |
| TGTAGAACTTCTTGGCAGGA+AGG | + | chr3.3:42803310-42803329 | None:intergenic | 45.0% | |
| TTCAGGGACCACGAAACATT+CGG | - | chr3.3:42801992-42802011 | MS.gene30166:intron | 45.0% | |
| TTCCTGCCAAGAAGTTCTAC+AGG | - | chr3.3:42803309-42803328 | MS.gene30166:CDS | 45.0% | |
| TTCTGCCCTGTAGAACTTCT+TGG | + | chr3.3:42803318-42803337 | None:intergenic | 45.0% | |
| TTGGATTATGCAAAAGCCCC+TGG | + | chr3.3:42801956-42801975 | None:intergenic | 45.0% | |
| ! | GCGGTCATGATAGTGAATCA+TGG | + | chr3.3:42802762-42802781 | None:intergenic | 45.0% |
| ! | GTTCGATGAGGTACTTGTCT+TGG | - | chr3.3:42802362-42802381 | MS.gene30166:intron | 45.0% |
| ! | TGTACTTGCTGAACAGGCTT+TGG | - | chr3.3:42801757-42801776 | MS.gene30166:CDS | 45.0% |
| ! | TTGCTGAACAGGCTTTGGTT+TGG | - | chr3.3:42801762-42801781 | MS.gene30166:CDS | 45.0% |
| !! | ATGTACCTGTCGATTCAGTG+TGG | + | chr3.3:42802099-42802118 | None:intergenic | 45.0% |
| !! | GCTTTGGTTTGGTAGCACAA+GGG | - | chr3.3:42801773-42801792 | MS.gene30166:CDS | 45.0% |
| !! | TCGTGCTGCTTTCTCTTGTT+CGG | + | chr3.3:42803234-42803253 | None:intergenic | 45.0% |
| !! | TAAAAAATTTAACAATATAA+GGG | + | chr3.3:42802147-42802166 | None:intergenic | 5.0% |
| !! | TTAAAAAATTTAACAATATA+AGG | + | chr3.3:42802148-42802167 | None:intergenic | 5.0% |
| GAAAGCAGCACGAGAGTCAT+TGG | - | chr3.3:42803241-42803260 | MS.gene30166:CDS | 50.0% | |
| GACAACCTCCGAATGTTTCG+TGG | + | chr3.3:42802003-42802022 | None:intergenic | 50.0% | |
| GCAAAAGCGGTGTGCTTGAA+GGG | + | chr3.3:42803040-42803059 | None:intergenic | 50.0% | |
| GCAAACTGTTGACCTTGTGC+TGG | + | chr3.3:42801849-42801868 | None:intergenic | 50.0% | |
| GCTATAACCAACCTCGGTCT+TGG | + | chr3.3:42801934-42801953 | None:intergenic | 50.0% | |
| GGTCAACAGTTTGCCCAGTT+TGG | - | chr3.3:42801855-42801874 | MS.gene30166:CDS | 50.0% | |
| GTCATCTGGTCCTTGAGCAA+TGG | + | chr3.3:42801820-42801839 | None:intergenic | 50.0% | |
| GTGGGAACACAATACAGGTC+TGG | - | chr3.3:42803191-42803210 | MS.gene30166:CDS | 50.0% | |
| TCCTACCACACTGAATCGAC+AGG | - | chr3.3:42802091-42802110 | MS.gene30166:intron | 50.0% | |
| ! | ACCGAGGTTGGTTATAGCCA+GGG | - | chr3.3:42801936-42801955 | MS.gene30166:CDS | 50.0% |
| !! | ACCTGTCGATTCAGTGTGGT+AGG | + | chr3.3:42802095-42802114 | None:intergenic | 50.0% |
| !! | CGTGCTGCTTTCTCTTGTTC+GGG | + | chr3.3:42803233-42803252 | None:intergenic | 50.0% |
| !! | GGCTTTGGTTTGGTAGCACA+AGG | - | chr3.3:42801772-42801791 | MS.gene30166:CDS | 50.0% |
| !! | GTGCTGCTTTCTCTTGTTCG+GGG | + | chr3.3:42803232-42803251 | None:intergenic | 50.0% |
| !! | TGCTGCTTTCTCTTGTTCGG+GGG | + | chr3.3:42803231-42803250 | None:intergenic | 50.0% |
| !! | TTCAAGCACACCGCTTTTGC+CGG | - | chr3.3:42803040-42803059 | MS.gene30166:intron | 50.0% |
| !!! | CTGCTTTTGGAGTGTCGAGT+TGG | - | chr3.3:42801884-42801903 | MS.gene30166:CDS | 50.0% |
| AAAAGCAGCCGGCACCAAAC+TGG | + | chr3.3:42801872-42801891 | None:intergenic | 55.0% | |
| AAAGCAGCCGGCACCAAACT+GGG | + | chr3.3:42801871-42801890 | None:intergenic | 55.0% | |
| AGGGACCACGAAACATTCGG+AGG | - | chr3.3:42801995-42802014 | MS.gene30166:intron | 55.0% | |
| CAAATCGGCCACCTTTCTCC+AGG | + | chr3.3:42803358-42803377 | None:intergenic | 55.0% | |
| CCCCTGGCTATAACCAACCT+CGG | + | chr3.3:42801940-42801959 | None:intergenic | 55.0% | |
| CTCGACACTCCAAAAGCAGC+CGG | + | chr3.3:42801883-42801902 | None:intergenic | 55.0% | |
| CTGGAGAAAGGTGGCCGATT+TGG | - | chr3.3:42803356-42803375 | MS.gene30166:CDS | 55.0% | |
| GATGACGACACACCAGCACA+AGG | - | chr3.3:42801834-42801853 | MS.gene30166:CDS | 55.0% | |
| GCCCTGTAGAACTTCTTGGC+AGG | + | chr3.3:42803314-42803333 | None:intergenic | 55.0% | |
| GGCAAAAGCGGTGTGCTTGA+AGG | + | chr3.3:42803041-42803060 | None:intergenic | 55.0% | |
| ! | CCGAGGTTGGTTATAGCCAG+GGG | - | chr3.3:42801937-42801956 | MS.gene30166:CDS | 55.0% |
| ! | GACCGAGGTTGGTTATAGCC+AGG | - | chr3.3:42801935-42801954 | MS.gene30166:CDS | 55.0% |
| ! | TGTGCTGGTGTGTCGTCATC+TGG | + | chr3.3:42801834-42801853 | None:intergenic | 55.0% |
| !! | CAGTTTGCCCAGTTTGGTGC+CGG | - | chr3.3:42801861-42801880 | MS.gene30166:CDS | 55.0% |
| !!! | AGTTTGGTGCCGGCTGCTTT+TGG | - | chr3.3:42801871-42801890 | MS.gene30166:CDS | 55.0% |
| TGGCCTTCCAGAGAGTGGCT+GGG | - | chr3.3:42801904-42801923 | MS.gene30166:CDS | 60.0% | |
| ! | TTGGCCTTCCAGAGAGTGGC+TGG | - | chr3.3:42801903-42801922 | MS.gene30166:CDS | 60.0% |
| !! | CGAGTTGGCCTTCCAGAGAG+TGG | - | chr3.3:42801899-42801918 | MS.gene30166:CDS | 60.0% |
| CACCCCAGCCACTCTCTGGA+AGG | + | chr3.3:42801910-42801929 | None:intergenic | 65.0% | |
| GGCCTTCCAGAGAGTGGCTG+GGG | - | chr3.3:42801905-42801924 | MS.gene30166:CDS | 65.0% | |
| GGGGTGACCAAGACCGAGGT+TGG | - | chr3.3:42801924-42801943 | MS.gene30166:CDS | 65.0% | |
| TGGTCACCCCAGCCACTCTC+TGG | + | chr3.3:42801914-42801933 | None:intergenic | 65.0% | |
| GGCTGGGGTGACCAAGACCG+AGG | - | chr3.3:42801920-42801939 | MS.gene30166:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 42801756 | 42803433 | 42801756 | ID=MS.gene30166 |
| chr3.3 | mRNA | 42801756 | 42803433 | 42801756 | ID=MS.gene30166.t1;Parent=MS.gene30166 |
| chr3.3 | exon | 42803077 | 42803433 | 42803077 | ID=MS.gene30166.t1.exon1;Parent=MS.gene30166.t1 |
| chr3.3 | CDS | 42803077 | 42803433 | 42803077 | ID=cds.MS.gene30166.t1;Parent=MS.gene30166.t1 |
| chr3.3 | exon | 42801756 | 42802007 | 42801756 | ID=MS.gene30166.t1.exon2;Parent=MS.gene30166.t1 |
| chr3.3 | CDS | 42801756 | 42802007 | 42801756 | ID=cds.MS.gene30166.t1;Parent=MS.gene30166.t1 |
| Gene Sequence |
| Protein sequence |
