Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027087.t1 | XP_003600075.1 | 95 | 202 | 10 | 0 | 1 | 202 | 1 | 202 | 4.30E-108 | 400.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027087.t1 | Q9SEC2 | 77.5 | 204 | 44 | 2 | 1 | 202 | 56 | 259 | 2.5e-88 | 326.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027087.t1 | G7IXM5 | 95.0 | 202 | 10 | 0 | 1 | 202 | 1 | 202 | 3.1e-108 | 400.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027087 | MS.gene38969 | PPI |
| MS.gene44259 | MS.gene027087 | PPI |
| MS.gene017651 | MS.gene027087 | PPI |
| MS.gene032356 | MS.gene027087 | PPI |
| MS.gene82727 | MS.gene027087 | PPI |
| MS.gene89646 | MS.gene027087 | PPI |
| MS.gene007821 | MS.gene027087 | PPI |
| MS.gene027087 | MS.gene32271 | PPI |
| MS.gene012096 | MS.gene027087 | PPI |
| MS.gene027087 | MS.gene30166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027087.t1 | MTR_3g051460 | 95.050 | 202 | 10 | 0 | 1 | 202 | 1 | 202 | 6.71e-146 | 404 |
| MS.gene027087.t1 | MTR_3g051460 | 94.898 | 196 | 10 | 0 | 7 | 202 | 42 | 237 | 1.33e-140 | 392 |
| MS.gene027087.t1 | MTR_3g051460 | 95.676 | 185 | 8 | 0 | 18 | 202 | 1 | 185 | 4.21e-133 | 371 |
| MS.gene027087.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 1 | 202 | 2.98e-124 | 349 |
| MS.gene027087.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 63 | 264 | 9.16e-124 | 350 |
| MS.gene027087.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 64 | 265 | 9.49e-124 | 350 |
| MS.gene027087.t1 | MTR_3g075380 | 64.516 | 186 | 57 | 2 | 19 | 202 | 18 | 196 | 1.32e-80 | 238 |
| MS.gene027087.t1 | MTR_8g076060 | 43.262 | 141 | 75 | 2 | 36 | 175 | 51 | 187 | 8.45e-29 | 106 |
| MS.gene027087.t1 | MTR_8g076060 | 42.000 | 150 | 82 | 2 | 36 | 184 | 51 | 196 | 8.54e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027087.t1 | AT5G61640 | 74.752 | 202 | 51 | 0 | 1 | 202 | 1 | 202 | 3.19e-116 | 329 |
| MS.gene027087.t1 | AT5G61640 | 74.752 | 202 | 51 | 0 | 1 | 202 | 28 | 229 | 7.42e-116 | 329 |
| MS.gene027087.t1 | AT5G07470 | 75.248 | 202 | 50 | 0 | 1 | 202 | 1 | 202 | 3.52e-115 | 326 |
| MS.gene027087.t1 | AT4G25130 | 74.257 | 202 | 50 | 1 | 3 | 202 | 57 | 258 | 1.48e-112 | 322 |
| MS.gene027087.t1 | AT5G07460 | 71.351 | 185 | 53 | 0 | 18 | 202 | 34 | 218 | 4.67e-102 | 294 |
| MS.gene027087.t1 | AT2G18030 | 37.870 | 169 | 95 | 3 | 11 | 178 | 33 | 192 | 4.88e-29 | 107 |
| MS.gene027087.t1 | AT2G18030 | 37.500 | 168 | 95 | 3 | 11 | 177 | 33 | 191 | 6.87e-29 | 108 |
Find 71 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCTGCTTTCTCTTGTTC+AGG | 0.142649 | 3.4:+48762916 | None:intergenic |
| AGTTTGGTGCCGGCTGCTTT+TGG | 0.217005 | 3.4:-48764311 | MS.gene027087:CDS |
| AGACTCTGCTTGATGTGTTC+TGG | 0.224155 | 3.4:-48764125 | MS.gene027087:CDS |
| AAAAGCAGCCGGCACCAAAC+TGG | 0.267452 | 3.4:+48764313 | None:intergenic |
| TTCTGCCCTGTAGAACTTCT+TGG | 0.277331 | 3.4:+48762831 | None:intergenic |
| TTGGCCTTCCAGAGAGTGGC+TGG | 0.314520 | 3.4:-48764279 | MS.gene027087:CDS |
| CTGGAGAAAGGTGGCCGATT+TGG | 0.315131 | 3.4:-48762790 | MS.gene027087:CDS |
| AGATATCAGGATGTGTGTTC+AGG | 0.318542 | 3.4:-48764207 | MS.gene027087:CDS |
| TTTGCATAATCCAAGATATC+AGG | 0.331491 | 3.4:-48764220 | MS.gene027087:CDS |
| GAAAGCAGCGCGAGAGTCAT+TGG | 0.341121 | 3.4:-48762905 | MS.gene027087:CDS |
| GATCAACAGTTTGCCCAGTT+TGG | 0.342720 | 3.4:-48764327 | MS.gene027087:CDS |
| TGTACTTGCTGAACAGGCTT+TGG | 0.346259 | 3.4:-48764425 | MS.gene027087:CDS |
| TGGTCACCCCAGCCACTCTC+TGG | 0.380270 | 3.4:+48764271 | None:intergenic |
| GCGCTGCTTTCTCTTGTTCA+GGG | 0.394172 | 3.4:+48762917 | None:intergenic |
| GACTCTGCTTGATGTGTTCT+GGG | 0.395999 | 3.4:-48764124 | MS.gene027087:CDS |
| ACTCCATGTACTTGCTGAAC+AGG | 0.398338 | 3.4:-48764431 | None:intergenic |
| GAACACACATCCTGATATCT+TGG | 0.402149 | 3.4:+48764210 | None:intergenic |
| CAGTTTGCCCAGTTTGGTGC+CGG | 0.427814 | 3.4:-48764321 | MS.gene027087:CDS |
| AGTGCTGGTGTGTTGTCATC+TGG | 0.431465 | 3.4:+48764351 | None:intergenic |
| TTCCTGCCAAGAAGTTCTAC+AGG | 0.447953 | 3.4:-48762837 | MS.gene027087:CDS |
| AACAACAAAAGAAATTAAAC+AGG | 0.455229 | 3.4:-48762879 | MS.gene027087:CDS |
| GCTATAACCAACCTCGGTCT+TGG | 0.457937 | 3.4:+48764251 | None:intergenic |
| GGCCTTCCAGAGAGTGGCTG+GGG | 0.462476 | 3.4:-48764277 | MS.gene027087:CDS |
| TTGCTGAACAGGCTTTGGTT+TGG | 0.469365 | 3.4:-48764420 | MS.gene027087:CDS |
| GTCTCATAGCTACATTCATT+AGG | 0.471381 | 3.4:+48764144 | None:intergenic |
| TTCAGGGACCACAAGACATT+CGG | 0.472264 | 3.4:-48764190 | MS.gene027087:CDS |
| GACCGAGGTTGGTTATAGCC+AGG | 0.476421 | 3.4:-48764247 | MS.gene027087:CDS |
| ATGATGTGGGAACGCAATAC+AGG | 0.477687 | 3.4:-48762960 | MS.gene027087:CDS |
| CACAAGGGCAACAGAAAAGA+TGG | 0.479400 | 3.4:-48764394 | MS.gene027087:CDS |
| CGCTGCTTTCTCTTGTTCAG+GGG | 0.482755 | 3.4:+48762918 | None:intergenic |
| GATATCAGGATGTGTGTTCA+GGG | 0.493618 | 3.4:-48764206 | MS.gene027087:CDS |
| TACATTCATTAGGATCATAC+TGG | 0.495214 | 3.4:+48764154 | None:intergenic |
| AAAGCAGCCGGCACCAAACT+GGG | 0.502577 | 3.4:+48764314 | None:intergenic |
| AAGATTGTTTGCGACCAAAT+CGG | 0.505454 | 3.4:+48762776 | None:intergenic |
| AAGCCTGTTCAGCAAGTACA+TGG | 0.508074 | 3.4:+48764428 | None:intergenic |
| GTGGGAACGCAATACAGGTC+TGG | 0.508669 | 3.4:-48762955 | MS.gene027087:CDS |
| TGGCCTTCCAGAGAGTGGCT+GGG | 0.510352 | 3.4:-48764278 | MS.gene027087:CDS |
| CAAATCGGCCACCTTTCTCC+AGG | 0.525303 | 3.4:+48762791 | None:intergenic |
| GCCCTGTAGAACTTCTTGGC+AGG | 0.528426 | 3.4:+48762835 | None:intergenic |
| TCGCAAACAATCTTCTTCCA+AGG | 0.528915 | 3.4:-48762767 | MS.gene027087:CDS |
| GGCTTTGGTTTGGTAGCACA+AGG | 0.529532 | 3.4:-48764410 | MS.gene027087:CDS |
| GATAGGATCATTGCATCCCT+TGG | 0.530306 | 3.4:+48762750 | None:intergenic |
| CGCAAACAATCTTCTTCCAA+GGG | 0.544080 | 3.4:-48762766 | MS.gene027087:CDS |
| CATCAACAATACCTGGAGAA+AGG | 0.547390 | 3.4:-48762802 | MS.gene027087:CDS |
| TTGGATTATGCAAAAGCCCC+TGG | 0.547903 | 3.4:+48764229 | None:intergenic |
| GCAAACTGTTGATCTAGTGC+TGG | 0.548635 | 3.4:+48764336 | None:intergenic |
| CACCCCAGCCACTCTCTGGA+AGG | 0.549984 | 3.4:+48764275 | None:intergenic |
| GACAACCTCCGAATGTCTTG+TGG | 0.551936 | 3.4:+48764182 | None:intergenic |
| AATGATCCTATCCGATGCTA+TGG | 0.554839 | 3.4:-48762739 | MS.gene027087:CDS |
| ACCGAGGTTGGTTATAGCCA+GGG | 0.563920 | 3.4:-48764246 | MS.gene027087:CDS |
| TGTAGAACTTCTTGGCAGGA+AGG | 0.563929 | 3.4:+48762839 | None:intergenic |
| AGAGTATCATCAACAATACC+TGG | 0.565341 | 3.4:-48762809 | MS.gene027087:CDS |
| ATTTAACCATAGCATCGGAT+AGG | 0.569960 | 3.4:+48762733 | None:intergenic |
| CTCGACACTCCAAAAGCAGC+CGG | 0.569968 | 3.4:+48764302 | None:intergenic |
| TCCTACCACACTGAATCGAC+AGG | 0.574090 | 3.4:-48764091 | MS.gene027087:intron |
| CGAGTTGGCCTTCCAGAGAG+TGG | 0.574524 | 3.4:-48764283 | MS.gene027087:CDS |
| GTCATCTGGTCCTTGAGCAA+TGG | 0.576799 | 3.4:+48764365 | None:intergenic |
| ACATTATTTAACCATAGCAT+CGG | 0.579092 | 3.4:+48762728 | None:intergenic |
| CCCCTGGCTATAACCAACCT+CGG | 0.587062 | 3.4:+48764245 | None:intergenic |
| ATGCAACAGGGGAATGATGT+GGG | 0.599485 | 3.4:-48762973 | MS.gene027087:intron |
| ATGGATTCATCCATTGCTCA+AGG | 0.603472 | 3.4:-48764375 | MS.gene027087:CDS |
| CCGAGGTTGGTTATAGCCAG+GGG | 0.603648 | 3.4:-48764245 | MS.gene027087:CDS |
| TATGCAACAGGGGAATGATG+TGG | 0.611159 | 3.4:-48762974 | MS.gene027087:intron |
| GGGGTGACCAAGACCGAGGT+TGG | 0.615083 | 3.4:-48764258 | MS.gene027087:CDS |
| AGGGACCACAAGACATTCGG+AGG | 0.625596 | 3.4:-48764187 | MS.gene027087:CDS |
| ACCTGTCGATTCAGTGTGGT+AGG | 0.630161 | 3.4:+48764090 | None:intergenic |
| GGCTGGGGTGACCAAGACCG+AGG | 0.651086 | 3.4:-48764262 | MS.gene027087:CDS |
| CAACAATACCTGGAGAAAGG+TGG | 0.652332 | 3.4:-48762799 | MS.gene027087:CDS |
| TCCTGCCAAGAAGTTCTACA+GGG | 0.678900 | 3.4:-48762836 | MS.gene027087:CDS |
| GCTTTGGTTTGGTAGCACAA+GGG | 0.692725 | 3.4:-48764409 | MS.gene027087:CDS |
| ATGTACCTGTCGATTCAGTG+TGG | 0.737036 | 3.4:+48764086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAATATAAAAAAGAAT+CGG | + | chr3.4:48764077-48764096 | None:intergenic | 10.0% |
| !! | ATCTTGTAATAATATGTAAA+AGG | + | chr3.4:48763554-48763573 | None:intergenic | 15.0% |
| !! | TAAATAATCAAACACTATAA+GGG | + | chr3.4:48763126-48763145 | None:intergenic | 15.0% |
| !! | TGATTCATTAAAATGAATTA+GGG | + | chr3.4:48763798-48763817 | None:intergenic | 15.0% |
| !! | TTAAATAATCAAACACTATA+AGG | + | chr3.4:48763127-48763146 | None:intergenic | 15.0% |
| !!! | TACATATAAAGTTTGTTATT+TGG | - | chr3.4:48763093-48763112 | MS.gene027087:intron | 15.0% |
| !! | AACAACAAAAGAAATTAAAC+AGG | - | chr3.4:48764282-48764301 | MS.gene027087:CDS | 20.0% |
| !! | GTGATTCATTAAAATGAATT+AGG | + | chr3.4:48763799-48763818 | None:intergenic | 20.0% |
| !!! | ATAACATCCTAAACAAATTT+TGG | + | chr3.4:48763384-48763403 | None:intergenic | 20.0% |
| !!! | TTTTTGACCAAAATTTGTTT+AGG | - | chr3.4:48763374-48763393 | MS.gene027087:intron | 20.0% |
| ! | AACAAACAAGTATTACAAGA+TGG | + | chr3.4:48763324-48763343 | None:intergenic | 25.0% |
| ! | ACTTTGGATTATCAATGTAT+TGG | - | chr3.4:48763235-48763254 | MS.gene027087:intron | 25.0% |
| ! | ATGAGATTCATGTAGAAAAT+CGG | + | chr3.4:48763727-48763746 | None:intergenic | 25.0% |
| ! | TTATCTAACTCTGAACTATT+TGG | - | chr3.4:48763485-48763504 | MS.gene027087:intron | 25.0% |
| !! | CTGATCTTGAATTTTATTCT+TGG | - | chr3.4:48763212-48763231 | MS.gene027087:intron | 25.0% |
| !! | GTATATTTGAAGTTCATACA+TGG | + | chr3.4:48764104-48764123 | None:intergenic | 25.0% |
| !! | TAATACTTGTTTGTTTGTTG+AGG | - | chr3.4:48763329-48763348 | MS.gene027087:intron | 25.0% |
| !! | TGAATTTTATTCTTGGACTT+TGG | - | chr3.4:48763219-48763238 | MS.gene027087:intron | 25.0% |
| !!! | GATTATCAATGTATTGGTTT+TGG | - | chr3.4:48763241-48763260 | MS.gene027087:intron | 25.0% |
| AAAAGGTTACTTATCGCTTA+AGG | + | chr3.4:48764159-48764178 | None:intergenic | 30.0% | |
| AACAAAATTGACAGAAAGAG+TGG | + | chr3.4:48763844-48763863 | None:intergenic | 30.0% | |
| AATAAAACTTGTGAACGTCT+AGG | - | chr3.4:48763935-48763954 | MS.gene027087:intron | 30.0% | |
| GGTTCATCACATAATGTATT+GGG | + | chr3.4:48763757-48763776 | None:intergenic | 30.0% | |
| TAAAAAAGAATCGGCAAAAG+CGG | + | chr3.4:48764068-48764087 | None:intergenic | 30.0% | |
| TACATTCATTAGGATCATAC+TGG | + | chr3.4:48763010-48763029 | None:intergenic | 30.0% | |
| TGGTTCATCACATAATGTAT+TGG | + | chr3.4:48763758-48763777 | None:intergenic | 30.0% | |
| TGTTGCATAGAAAGATCAAA+AGG | + | chr3.4:48764176-48764195 | None:intergenic | 30.0% | |
| TTTGATCTTTCTATGCAACA+GGG | - | chr3.4:48764176-48764195 | MS.gene027087:CDS | 30.0% | |
| TTTGCATAATCCAAGATATC+AGG | - | chr3.4:48762941-48762960 | MS.gene027087:CDS | 30.0% | |
| ! | ATACTGCAATCTAAAGCAAA+AGG | + | chr3.4:48763624-48763643 | None:intergenic | 30.0% |
| ! | TTTTGATCTTTCTATGCAAC+AGG | - | chr3.4:48764175-48764194 | MS.gene027087:CDS | 30.0% |
| !! | AACGACAAAACAAAAGTGTT+CGG | + | chr3.4:48763870-48763889 | None:intergenic | 30.0% |
| !! | TACAAGATGGTTAACTTGTT+AGG | + | chr3.4:48763311-48763330 | None:intergenic | 30.0% |
| !! | TAGACGTTCACAAGTTTTAT+TGG | + | chr3.4:48763936-48763955 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTCTCAACGATTA+AGG | - | chr3.4:48763258-48763277 | MS.gene027087:intron | 30.0% |
| AAGATTGTTTGCGACCAAAT+CGG | + | chr3.4:48764388-48764407 | None:intergenic | 35.0% | |
| ACTAGTTCGATATGGAATCA+TGG | - | chr3.4:48763961-48763980 | MS.gene027087:intron | 35.0% | |
| AGAAAATCGGTACAAACTAG+AGG | + | chr3.4:48763714-48763733 | None:intergenic | 35.0% | |
| GTCTCATAGCTACATTCATT+AGG | + | chr3.4:48763020-48763039 | None:intergenic | 35.0% | |
| TATGTAAAAGGACGATGTGT+AGG | + | chr3.4:48763542-48763561 | None:intergenic | 35.0% | |
| TTGATCTTTCTATGCAACAG+GGG | - | chr3.4:48764177-48764196 | MS.gene027087:CDS | 35.0% | |
| ! | AGAGTATCATCAACAATACC+TGG | - | chr3.4:48764352-48764371 | MS.gene027087:CDS | 35.0% |
| ! | ATGATTTTGTGTTTGAGCTC+TGG | - | chr3.4:48763433-48763452 | MS.gene027087:intron | 35.0% |
| ! | GGGATTATGATAGTGAATCA+TGG | + | chr3.4:48763778-48763797 | None:intergenic | 35.0% |
| !! | AAGATGGTTAACTTGTTAGG+AGG | + | chr3.4:48763308-48763327 | None:intergenic | 35.0% |
| !!! | ACGTTCACAAGTTTTATTGG+AGG | + | chr3.4:48763933-48763952 | None:intergenic | 35.0% |
| AAATTGACAGAAAGAGTGGC+TGG | + | chr3.4:48763840-48763859 | None:intergenic | 40.0% | |
| AATGATCCTATCCGATGCTA+TGG | - | chr3.4:48764422-48764441 | MS.gene027087:CDS | 40.0% | |
| AGATATCAGGATGTGTGTTC+AGG | - | chr3.4:48762954-48762973 | MS.gene027087:CDS | 40.0% | |
| ATGGATTCATCCATTGCTCA+AGG | - | chr3.4:48762786-48762805 | MS.gene027087:CDS | 40.0% | |
| CATCAACAATACCTGGAGAA+AGG | - | chr3.4:48764359-48764378 | MS.gene027087:CDS | 40.0% | |
| CGCAAACAATCTTCTTCCAA+GGG | - | chr3.4:48764395-48764414 | MS.gene027087:CDS | 40.0% | |
| CTAGGCTAACTAGTTCGATA+TGG | - | chr3.4:48763953-48763972 | MS.gene027087:intron | 40.0% | |
| CTTAAGGCAAAGAGTGAATG+AGG | + | chr3.4:48764143-48764162 | None:intergenic | 40.0% | |
| GAACACACATCCTGATATCT+TGG | + | chr3.4:48762954-48762973 | None:intergenic | 40.0% | |
| GACTGAGTCTTGAATTATCG+AGG | - | chr3.4:48763898-48763917 | MS.gene027087:intron | 40.0% | |
| GAGTCTTGAATTATCGAGGT+TGG | - | chr3.4:48763902-48763921 | MS.gene027087:intron | 40.0% | |
| GATATCAGGATGTGTGTTCA+GGG | - | chr3.4:48762955-48762974 | MS.gene027087:CDS | 40.0% | |
| GATGGTATGTATCAGTGGTT+TGG | + | chr3.4:48763516-48763535 | None:intergenic | 40.0% | |
| TCGCAAACAATCTTCTTCCA+AGG | - | chr3.4:48764394-48764413 | MS.gene027087:CDS | 40.0% | |
| TGACTGTGATGAAGAGACAA+AGG | + | chr3.4:48764014-48764033 | None:intergenic | 40.0% | |
| ! | GTTTGTTGAGGTACTTGTCT+AGG | - | chr3.4:48763341-48763360 | MS.gene027087:intron | 40.0% |
| ! | TATGTATCAGTGGTTTGGCT+TGG | + | chr3.4:48763511-48763530 | None:intergenic | 40.0% |
| !! | AACTTGTTAGGAGGAGTCAT+TGG | + | chr3.4:48763299-48763318 | None:intergenic | 40.0% |
| AGACTCTGCTTGATGTGTTC+TGG | - | chr3.4:48763036-48763055 | MS.gene027087:intron | 45.0% | |
| ATGATGTGGGAACGCAATAC+AGG | - | chr3.4:48764201-48764220 | MS.gene027087:CDS | 45.0% | |
| ATGCAACAGGGGAATGATGT+GGG | - | chr3.4:48764188-48764207 | MS.gene027087:CDS | 45.0% | |
| CAACAATACCTGGAGAAAGG+TGG | - | chr3.4:48764362-48764381 | MS.gene027087:CDS | 45.0% | |
| CACAAGGGCAACAGAAAAGA+TGG | - | chr3.4:48762767-48762786 | MS.gene027087:CDS | 45.0% | |
| GACTCTGCTTGATGTGTTCT+GGG | - | chr3.4:48763037-48763056 | MS.gene027087:intron | 45.0% | |
| GATAGGATCATTGCATCCCT+TGG | + | chr3.4:48764414-48764433 | None:intergenic | 45.0% | |
| GATCAACAGTTTGCCCAGTT+TGG | - | chr3.4:48762834-48762853 | MS.gene027087:CDS | 45.0% | |
| GCAAAAGCGGTGTGCTTTAA+GGG | + | chr3.4:48764055-48764074 | None:intergenic | 45.0% | |
| GCAAACTGTTGATCTAGTGC+TGG | + | chr3.4:48762828-48762847 | None:intergenic | 45.0% | |
| GGTGTGATGGTATGTATCAG+TGG | + | chr3.4:48763521-48763540 | None:intergenic | 45.0% | |
| TATGCAACAGGGGAATGATG+TGG | - | chr3.4:48764187-48764206 | MS.gene027087:CDS | 45.0% | |
| TCCTGCCAAGAAGTTCTACA+GGG | - | chr3.4:48764325-48764344 | MS.gene027087:CDS | 45.0% | |
| TGTAGAACTTCTTGGCAGGA+AGG | + | chr3.4:48764325-48764344 | None:intergenic | 45.0% | |
| TTCAGGGACCACAAGACATT+CGG | - | chr3.4:48762971-48762990 | MS.gene027087:intron | 45.0% | |
| TTCCTGCCAAGAAGTTCTAC+AGG | - | chr3.4:48764324-48764343 | MS.gene027087:CDS | 45.0% | |
| TTCTGCCCTGTAGAACTTCT+TGG | + | chr3.4:48764333-48764352 | None:intergenic | 45.0% | |
| TTGGATTATGCAAAAGCCCC+TGG | + | chr3.4:48762935-48762954 | None:intergenic | 45.0% | |
| ! | TGTACTTGCTGAACAGGCTT+TGG | - | chr3.4:48762736-48762755 | MS.gene027087:CDS | 45.0% |
| ! | TTGCTGAACAGGCTTTGGTT+TGG | - | chr3.4:48762741-48762760 | MS.gene027087:CDS | 45.0% |
| !! | ATGTACCTGTCGATTCAGTG+TGG | + | chr3.4:48763078-48763097 | None:intergenic | 45.0% |
| !! | GCTTTGGTTTGGTAGCACAA+GGG | - | chr3.4:48762752-48762771 | MS.gene027087:CDS | 45.0% |
| AGGACGATGTGTAGGTGTGA+TGG | + | chr3.4:48763534-48763553 | None:intergenic | 50.0% | |
| GACAACCTCCGAATGTCTTG+TGG | + | chr3.4:48762982-48763001 | None:intergenic | 50.0% | |
| GCTATAACCAACCTCGGTCT+TGG | + | chr3.4:48762913-48762932 | None:intergenic | 50.0% | |
| GGCAAAAGCGGTGTGCTTTA+AGG | + | chr3.4:48764056-48764075 | None:intergenic | 50.0% | |
| GTCATCTGGTCCTTGAGCAA+TGG | + | chr3.4:48762799-48762818 | None:intergenic | 50.0% | |
| TCCTACCACACTGAATCGAC+AGG | - | chr3.4:48763070-48763089 | MS.gene027087:intron | 50.0% | |
| ! | ACCGAGGTTGGTTATAGCCA+GGG | - | chr3.4:48762915-48762934 | MS.gene027087:CDS | 50.0% |
| ! | CGCTGCTTTCTCTTGTTCAG+GGG | + | chr3.4:48764246-48764265 | None:intergenic | 50.0% |
| ! | GCGCTGCTTTCTCTTGTTCA+GGG | + | chr3.4:48764247-48764266 | None:intergenic | 50.0% |
| !! | ACCTGTCGATTCAGTGTGGT+AGG | + | chr3.4:48763074-48763093 | None:intergenic | 50.0% |
| !! | AGTGCTGGTGTGTTGTCATC+TGG | + | chr3.4:48762813-48762832 | None:intergenic | 50.0% |
| !! | GGCTTTGGTTTGGTAGCACA+AGG | - | chr3.4:48762751-48762770 | MS.gene027087:CDS | 50.0% |
| !!! | CTGCTTTTGGAGTGTCGAGT+TGG | - | chr3.4:48762863-48762882 | MS.gene027087:CDS | 50.0% |
| AAAAGCAGCCGGCACCAAAC+TGG | + | chr3.4:48762851-48762870 | None:intergenic | 55.0% | |
| AAAGCAGCCGGCACCAAACT+GGG | + | chr3.4:48762850-48762869 | None:intergenic | 55.0% | |
| AGGGACCACAAGACATTCGG+AGG | - | chr3.4:48762974-48762993 | MS.gene027087:intron | 55.0% | |
| CAAATCGGCCACCTTTCTCC+AGG | + | chr3.4:48764373-48764392 | None:intergenic | 55.0% | |
| CCCCTGGCTATAACCAACCT+CGG | + | chr3.4:48762919-48762938 | None:intergenic | 55.0% | |
| CTCGACACTCCAAAAGCAGC+CGG | + | chr3.4:48762862-48762881 | None:intergenic | 55.0% | |
| CTGGAGAAAGGTGGCCGATT+TGG | - | chr3.4:48764371-48764390 | MS.gene027087:CDS | 55.0% | |
| GAAAGCAGCGCGAGAGTCAT+TGG | - | chr3.4:48764256-48764275 | MS.gene027087:CDS | 55.0% | |
| GCCCTGTAGAACTTCTTGGC+AGG | + | chr3.4:48764329-48764348 | None:intergenic | 55.0% | |
| GTGGGAACGCAATACAGGTC+TGG | - | chr3.4:48764206-48764225 | MS.gene027087:CDS | 55.0% | |
| ! | CCGAGGTTGGTTATAGCCAG+GGG | - | chr3.4:48762916-48762935 | MS.gene027087:CDS | 55.0% |
| ! | CGCGCTGCTTTCTCTTGTTC+AGG | + | chr3.4:48764248-48764267 | None:intergenic | 55.0% |
| ! | GACCGAGGTTGGTTATAGCC+AGG | - | chr3.4:48762914-48762933 | MS.gene027087:CDS | 55.0% |
| !! | CAGTTTGCCCAGTTTGGTGC+CGG | - | chr3.4:48762840-48762859 | MS.gene027087:CDS | 55.0% |
| !!! | AGTTTGGTGCCGGCTGCTTT+TGG | - | chr3.4:48762850-48762869 | MS.gene027087:CDS | 55.0% |
| TGGCCTTCCAGAGAGTGGCT+GGG | - | chr3.4:48762883-48762902 | MS.gene027087:CDS | 60.0% | |
| ! | TTGGCCTTCCAGAGAGTGGC+TGG | - | chr3.4:48762882-48762901 | MS.gene027087:CDS | 60.0% |
| !! | CGAGTTGGCCTTCCAGAGAG+TGG | - | chr3.4:48762878-48762897 | MS.gene027087:CDS | 60.0% |
| CACCCCAGCCACTCTCTGGA+AGG | + | chr3.4:48762889-48762908 | None:intergenic | 65.0% | |
| GGCCTTCCAGAGAGTGGCTG+GGG | - | chr3.4:48762884-48762903 | MS.gene027087:CDS | 65.0% | |
| GGGGTGACCAAGACCGAGGT+TGG | - | chr3.4:48762903-48762922 | MS.gene027087:CDS | 65.0% | |
| TGGTCACCCCAGCCACTCTC+TGG | + | chr3.4:48762893-48762912 | None:intergenic | 65.0% | |
| GGCTGGGGTGACCAAGACCG+AGG | - | chr3.4:48762899-48762918 | MS.gene027087:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 48762735 | 48764448 | 48762735 | ID=MS.gene027087 |
| chr3.4 | mRNA | 48762735 | 48764448 | 48762735 | ID=MS.gene027087.t1;Parent=MS.gene027087 |
| chr3.4 | exon | 48764092 | 48764448 | 48764092 | ID=MS.gene027087.t1.exon1;Parent=MS.gene027087.t1 |
| chr3.4 | CDS | 48764092 | 48764448 | 48764092 | ID=cds.MS.gene027087.t1;Parent=MS.gene027087.t1 |
| chr3.4 | exon | 48762735 | 48762986 | 48762735 | ID=MS.gene027087.t1.exon2;Parent=MS.gene027087.t1 |
| chr3.4 | CDS | 48762735 | 48762986 | 48762735 | ID=cds.MS.gene027087.t1;Parent=MS.gene027087.t1 |
| Gene Sequence |
| Protein sequence |
