Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82727.t1 | XP_003600075.1 | 87.1 | 202 | 26 | 0 | 1 | 202 | 1 | 202 | 3.10E-98 | 367.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82727.t1 | Q9SEC2 | 72.1 | 204 | 55 | 2 | 1 | 202 | 56 | 259 | 1.7e-81 | 303.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82727.t1 | G7IXM5 | 87.1 | 202 | 26 | 0 | 1 | 202 | 1 | 202 | 2.2e-98 | 367.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82727 | MS.gene44259 | PPI |
| MS.gene82727 | MS.gene32271 | PPI |
| MS.gene82727 | MS.gene30166 | PPI |
| MS.gene82727 | MS.gene38969 | PPI |
| MS.gene032356 | MS.gene82727 | PPI |
| MS.gene82727 | MS.gene027087 | PPI |
| MS.gene017651 | MS.gene82727 | PPI |
| MS.gene89646 | MS.gene82727 | PPI |
| MS.gene82727 | MS.gene012096 | PPI |
| MS.gene007821 | MS.gene82727 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82727.t1 | MTR_3g051460 | 94.554 | 202 | 11 | 0 | 1 | 202 | 1 | 202 | 2.70e-145 | 402 |
| MS.gene82727.t1 | MTR_3g051460 | 94.388 | 196 | 11 | 0 | 7 | 202 | 42 | 237 | 6.76e-140 | 390 |
| MS.gene82727.t1 | MTR_3g051460 | 95.135 | 185 | 9 | 0 | 18 | 202 | 1 | 185 | 2.41e-132 | 369 |
| MS.gene82727.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 1 | 202 | 5.10e-124 | 348 |
| MS.gene82727.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 63 | 264 | 1.29e-123 | 350 |
| MS.gene82727.t1 | MTR_5g092680 | 79.703 | 202 | 41 | 0 | 1 | 202 | 64 | 265 | 1.33e-123 | 350 |
| MS.gene82727.t1 | MTR_3g075380 | 65.054 | 186 | 56 | 2 | 19 | 202 | 18 | 196 | 3.15e-81 | 240 |
| MS.gene82727.t1 | MTR_8g076060 | 43.262 | 141 | 75 | 2 | 36 | 175 | 51 | 187 | 6.97e-29 | 106 |
| MS.gene82727.t1 | MTR_8g076060 | 42.000 | 150 | 82 | 2 | 36 | 184 | 51 | 196 | 7.29e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82727.t1 | AT5G61640 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.17e-115 | 327 |
| MS.gene82727.t1 | AT5G61640 | 74.257 | 202 | 52 | 0 | 1 | 202 | 28 | 229 | 4.24e-115 | 327 |
| MS.gene82727.t1 | AT5G07470 | 74.752 | 202 | 51 | 0 | 1 | 202 | 1 | 202 | 2.40e-114 | 324 |
| MS.gene82727.t1 | AT4G25130 | 73.762 | 202 | 51 | 1 | 3 | 202 | 57 | 258 | 7.08e-112 | 320 |
| MS.gene82727.t1 | AT5G07460 | 70.811 | 185 | 54 | 0 | 18 | 202 | 34 | 218 | 3.14e-101 | 291 |
| MS.gene82727.t1 | AT2G18030 | 37.870 | 169 | 95 | 3 | 11 | 178 | 33 | 192 | 3.39e-29 | 107 |
| MS.gene82727.t1 | AT2G18030 | 37.500 | 168 | 95 | 3 | 11 | 177 | 33 | 191 | 5.80e-29 | 108 |
Find 68 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGCTGCTTTCTCTTGTTC+AGG | 0.201253 | 3.1:+38363330 | None:intergenic |
| AGTTTGGTGCCGGCTGCTTT+TGG | 0.217005 | 3.1:-38364725 | MS.gene82727:CDS |
| AGACTCTGCTTGATGTGTTC+TGG | 0.224155 | 3.1:-38364539 | MS.gene82727:CDS |
| AAAAGCAGCCGGCACCAAAC+TGG | 0.267452 | 3.1:+38364727 | None:intergenic |
| TTCTGCTCTGTAGAACTTCT+TGG | 0.275035 | 3.1:+38363245 | None:intergenic |
| CTTGAGAAAGGTGGCCGATT+TGG | 0.314430 | 3.1:-38363204 | MS.gene82727:CDS |
| TTGGCCTTCCAGAGAGTGGC+TGG | 0.314520 | 3.1:-38364693 | MS.gene82727:CDS |
| AGATATCAGGATGTGTGTTC+AGG | 0.318542 | 3.1:-38364621 | MS.gene82727:CDS |
| TTTGCATAATCCAAGATATC+AGG | 0.331491 | 3.1:-38364634 | MS.gene82727:CDS |
| GATCAACAGTTTGCCCAGTT+TGG | 0.342720 | 3.1:-38364741 | MS.gene82727:CDS |
| TGTACTTGCTGAACAGGCTT+TGG | 0.346259 | 3.1:-38364839 | MS.gene82727:CDS |
| TGGTCACCCCAGCCACTCTC+TGG | 0.380270 | 3.1:+38364685 | None:intergenic |
| GCGCTGCTTTCTCTTGTTCA+GGG | 0.386157 | 3.1:+38363331 | None:intergenic |
| GACTCTGCTTGATGTGTTCT+GGG | 0.395999 | 3.1:-38364538 | MS.gene82727:CDS |
| ACTCCATGTACTTGCTGAAC+AGG | 0.398338 | 3.1:-38364845 | None:intergenic |
| GAACACACATCCTGATATCT+TGG | 0.402149 | 3.1:+38364624 | None:intergenic |
| AACAACAAAAGAAGTTGAAC+AGG | 0.418110 | 3.1:-38363293 | MS.gene82727:CDS |
| CAGTTTGCCCAGTTTGGTGC+CGG | 0.427814 | 3.1:-38364735 | MS.gene82727:CDS |
| AGTGCTGGTGTGTTGTCATC+TGG | 0.431465 | 3.1:+38364765 | None:intergenic |
| GCTATAACCAACCTCGGTCT+TGG | 0.457937 | 3.1:+38364665 | None:intergenic |
| GGCCTTCCAGAGAGTGGCTG+GGG | 0.462476 | 3.1:-38364691 | MS.gene82727:CDS |
| AATTAACCATAGCATCGAAT+AGG | 0.464491 | 3.1:+38363147 | None:intergenic |
| TTGCTGAACAGGCTTTGGTT+TGG | 0.469365 | 3.1:-38364834 | MS.gene82727:CDS |
| GTCTCATAGCTACATTCATT+AGG | 0.471381 | 3.1:+38364558 | None:intergenic |
| TTCAGGGACCACAAGACATT+CGG | 0.472264 | 3.1:-38364604 | MS.gene82727:CDS |
| GACCGAGGTTGGTTATAGCC+AGG | 0.476421 | 3.1:-38364661 | MS.gene82727:CDS |
| CACAAGGGCAACAGAAAAGA+TGG | 0.479400 | 3.1:-38364808 | MS.gene82727:CDS |
| CGCTGCTTTCTCTTGTTCAG+GGG | 0.482755 | 3.1:+38363332 | None:intergenic |
| GATATCAGGATGTGTGTTCA+GGG | 0.493618 | 3.1:-38364620 | MS.gene82727:CDS |
| TACATTCATTAGGATCATAC+TGG | 0.495214 | 3.1:+38364568 | None:intergenic |
| AATAGGATCATTGCATCCCT+TGG | 0.497368 | 3.1:+38363164 | None:intergenic |
| AAAGCAGCCGGCACCAAACT+GGG | 0.502577 | 3.1:+38364728 | None:intergenic |
| AAGATTGTTTGCGACCAAAT+CGG | 0.505454 | 3.1:+38363190 | None:intergenic |
| AAGCCTGTTCAGCAAGTACA+TGG | 0.508074 | 3.1:+38364842 | None:intergenic |
| TGGCCTTCCAGAGAGTGGCT+GGG | 0.510352 | 3.1:-38364692 | MS.gene82727:CDS |
| AATGATCCTATTCGATGCTA+TGG | 0.520547 | 3.1:-38363153 | MS.gene82727:CDS |
| CATCAACAATACCTTGAGAA+AGG | 0.522619 | 3.1:-38363216 | MS.gene82727:CDS |
| GTGGGAACACAATACAGGTC+TGG | 0.528212 | 3.1:-38363369 | MS.gene82727:CDS |
| ATGATGTGGGAACACAATAC+AGG | 0.528961 | 3.1:-38363374 | MS.gene82727:CDS |
| GGCTTTGGTTTGGTAGCACA+AGG | 0.529532 | 3.1:-38364824 | MS.gene82727:CDS |
| GAAAGCAGCGCAAGAATCGT+TGG | 0.537193 | 3.1:-38363319 | MS.gene82727:CDS |
| GCTCTGTAGAACTTCTTGGC+AGG | 0.545016 | 3.1:+38363249 | None:intergenic |
| CGCAAACAATCTTCCTCCAA+GGG | 0.546376 | 3.1:-38363180 | MS.gene82727:CDS |
| TTGGATTATGCAAAAGCCCC+TGG | 0.547903 | 3.1:+38364643 | None:intergenic |
| GCAAACTGTTGATCTAGTGC+TGG | 0.548635 | 3.1:+38364750 | None:intergenic |
| CACCCCAGCCACTCTCTGGA+AGG | 0.549984 | 3.1:+38364689 | None:intergenic |
| GACAACCTCCGAATGTCTTG+TGG | 0.551936 | 3.1:+38364596 | None:intergenic |
| ACCGAGGTTGGTTATAGCCA+GGG | 0.563920 | 3.1:-38364660 | MS.gene82727:CDS |
| TGTAGAACTTCTTGGCAGGA+AGG | 0.563929 | 3.1:+38363253 | None:intergenic |
| CTCGACACTCCAAAAGCAGC+CGG | 0.569968 | 3.1:+38364716 | None:intergenic |
| TCCTACCACACTGAATCGAC+AGG | 0.574090 | 3.1:-38364505 | MS.gene82727:intron |
| CGAGTTGGCCTTCCAGAGAG+TGG | 0.574524 | 3.1:-38364697 | MS.gene82727:CDS |
| GTCATCTGGTCCTTGAGCAA+TGG | 0.576799 | 3.1:+38364779 | None:intergenic |
| CCCCTGGCTATAACCAACCT+CGG | 0.587062 | 3.1:+38364659 | None:intergenic |
| TCGCAAACAATCTTCCTCCA+AGG | 0.587603 | 3.1:-38363181 | MS.gene82727:CDS |
| AGGATCATTGCATCCCTTGG+AGG | 0.595137 | 3.1:+38363167 | None:intergenic |
| ATGCAACAGGGGAATGATGT+GGG | 0.599485 | 3.1:-38363387 | MS.gene82727:intron |
| CAAATCGGCCACCTTTCTCA+AGG | 0.602618 | 3.1:+38363205 | None:intergenic |
| ATGGATTCATCCATTGCTCA+AGG | 0.603472 | 3.1:-38364789 | MS.gene82727:CDS |
| CCGAGGTTGGTTATAGCCAG+GGG | 0.603648 | 3.1:-38364659 | MS.gene82727:CDS |
| TATGCAACAGGGGAATGATG+TGG | 0.611159 | 3.1:-38363388 | MS.gene82727:intron |
| GGGGTGACCAAGACCGAGGT+TGG | 0.615083 | 3.1:-38364672 | MS.gene82727:CDS |
| AGGGACCACAAGACATTCGG+AGG | 0.625596 | 3.1:-38364601 | MS.gene82727:CDS |
| ACCTGTCGATTCAGTGTGGT+AGG | 0.630161 | 3.1:+38364504 | None:intergenic |
| CAACAATACCTTGAGAAAGG+TGG | 0.649118 | 3.1:-38363213 | MS.gene82727:CDS |
| GGCTGGGGTGACCAAGACCG+AGG | 0.651086 | 3.1:-38364676 | MS.gene82727:CDS |
| GCTTTGGTTTGGTAGCACAA+GGG | 0.692725 | 3.1:-38364823 | MS.gene82727:CDS |
| ATGTACCTGTCGATTCAGTG+TGG | 0.737036 | 3.1:+38364500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAATATAAAAAAGAAT+CGG | + | chr3.1:38364491-38364510 | None:intergenic | 10.0% |
| !! | ATCTTGTAATAATATGTAAA+AGG | + | chr3.1:38363968-38363987 | None:intergenic | 15.0% |
| !! | TAAATAATCAAACACTATAA+GGG | + | chr3.1:38363540-38363559 | None:intergenic | 15.0% |
| !! | TGATTCATTAAAATGAATTA+GGG | + | chr3.1:38364212-38364231 | None:intergenic | 15.0% |
| !! | TTAAATAATCAAACACTATA+AGG | + | chr3.1:38363541-38363560 | None:intergenic | 15.0% |
| !!! | TACATATAAAGTTTGTTATT+TGG | - | chr3.1:38363507-38363526 | MS.gene82727:intron | 15.0% |
| !! | GTGATTCATTAAAATGAATT+AGG | + | chr3.1:38364213-38364232 | None:intergenic | 20.0% |
| !! | TCAAAAAAATAAAACATCCT+AGG | + | chr3.1:38363775-38363794 | None:intergenic | 20.0% |
| !!! | ATAACATCCTAAACAAATTT+TGG | + | chr3.1:38363798-38363817 | None:intergenic | 20.0% |
| !!! | TTTTTGACCAAAATTTGTTT+AGG | - | chr3.1:38363788-38363807 | MS.gene82727:intron | 20.0% |
| ! | AACAAACAAGTATTACAAGA+TGG | + | chr3.1:38363738-38363757 | None:intergenic | 25.0% |
| ! | ACTTTGGATTATCAATGTAT+TGG | - | chr3.1:38363649-38363668 | MS.gene82727:intron | 25.0% |
| ! | ATGACATTCATGTAGAAAAT+CGG | + | chr3.1:38364141-38364160 | None:intergenic | 25.0% |
| ! | TTATCTAACTCTGAACTATT+TGG | - | chr3.1:38363899-38363918 | MS.gene82727:intron | 25.0% |
| !! | CTGATCTTGAATTTTATTCT+TGG | - | chr3.1:38363626-38363645 | MS.gene82727:intron | 25.0% |
| !! | GTATATTTGAAGTTCATACA+TGG | + | chr3.1:38364518-38364537 | None:intergenic | 25.0% |
| !! | TAATACTTGTTTGTTTGTTG+AGG | - | chr3.1:38363743-38363762 | MS.gene82727:intron | 25.0% |
| !! | TGAATTTTATTCTTGGACTT+TGG | - | chr3.1:38363633-38363652 | MS.gene82727:intron | 25.0% |
| !!! | GATTATCAATGTATTGGTTT+TGG | - | chr3.1:38363655-38363674 | MS.gene82727:intron | 25.0% |
| AAAAGGTTACTTATCGCTTA+AGG | + | chr3.1:38364573-38364592 | None:intergenic | 30.0% | |
| AACAAAATTGACAGAAAGAG+TGG | + | chr3.1:38364258-38364277 | None:intergenic | 30.0% | |
| AACAACAAAAGAAGTTGAAC+AGG | - | chr3.1:38364696-38364715 | MS.gene82727:CDS | 30.0% | |
| AATAAAACTTGTGAACGTCT+AGG | - | chr3.1:38364349-38364368 | MS.gene82727:intron | 30.0% | |
| GGTTCATCACATAATGTATT+GGG | + | chr3.1:38364171-38364190 | None:intergenic | 30.0% | |
| TAAAAAAGAATCGGCAAAAG+CGG | + | chr3.1:38364482-38364501 | None:intergenic | 30.0% | |
| TACATTCATTAGGATCATAC+TGG | + | chr3.1:38363424-38363443 | None:intergenic | 30.0% | |
| TGGTTCATCACATAATGTAT+TGG | + | chr3.1:38364172-38364191 | None:intergenic | 30.0% | |
| TGTTGCATAGAAAGATCAAA+AGG | + | chr3.1:38364590-38364609 | None:intergenic | 30.0% | |
| TTTGATCTTTCTATGCAACA+GGG | - | chr3.1:38364590-38364609 | MS.gene82727:CDS | 30.0% | |
| TTTGCATAATCCAAGATATC+AGG | - | chr3.1:38363355-38363374 | MS.gene82727:CDS | 30.0% | |
| ! | ATACTGCAATCTAAAGCAAA+AGG | + | chr3.1:38364038-38364057 | None:intergenic | 30.0% |
| ! | TTTTGATCTTTCTATGCAAC+AGG | - | chr3.1:38364589-38364608 | MS.gene82727:CDS | 30.0% |
| !! | AACGACAAAACAAAAGTGTT+CGG | + | chr3.1:38364284-38364303 | None:intergenic | 30.0% |
| !! | TACAAGATGGTTAACTTGTT+AGG | + | chr3.1:38363725-38363744 | None:intergenic | 30.0% |
| !! | TAGACGTTCACAAGTTTTAT+TGG | + | chr3.1:38364350-38364369 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTCTCAACGATTA+AGG | - | chr3.1:38363672-38363691 | MS.gene82727:intron | 30.0% |
| AAGATTGTTTGCGACCAAAT+CGG | + | chr3.1:38364802-38364821 | None:intergenic | 35.0% | |
| AATGATCCTATTCGATGCTA+TGG | - | chr3.1:38364836-38364855 | MS.gene82727:CDS | 35.0% | |
| ACTAGTTCGATATGGAATCA+TGG | - | chr3.1:38364375-38364394 | MS.gene82727:intron | 35.0% | |
| AGAAAATCGGTACAAACTAG+AGG | + | chr3.1:38364128-38364147 | None:intergenic | 35.0% | |
| CATCAACAATACCTTGAGAA+AGG | - | chr3.1:38364773-38364792 | MS.gene82727:CDS | 35.0% | |
| CTTAAGGTAAAGAGTGAATG+AGG | + | chr3.1:38364557-38364576 | None:intergenic | 35.0% | |
| GTCTCATAGCTACATTCATT+AGG | + | chr3.1:38363434-38363453 | None:intergenic | 35.0% | |
| TATGTAAAAGGACGATGTGT+AGG | + | chr3.1:38363956-38363975 | None:intergenic | 35.0% | |
| TTGATCTTTCTATGCAACAG+GGG | - | chr3.1:38364591-38364610 | MS.gene82727:CDS | 35.0% | |
| ! | ATGATTTTGTGTTTGAGCTC+TGG | - | chr3.1:38363847-38363866 | MS.gene82727:intron | 35.0% |
| ! | GGGATTATGATAGTGAATCA+TGG | + | chr3.1:38364192-38364211 | None:intergenic | 35.0% |
| !! | AAGATGGTTAACTTGTTAGG+AGG | + | chr3.1:38363722-38363741 | None:intergenic | 35.0% |
| !!! | ACGTTCACAAGTTTTATTGG+AGG | + | chr3.1:38364347-38364366 | None:intergenic | 35.0% |
| AAATTGACAGAAAGAGTGGC+TGG | + | chr3.1:38364254-38364273 | None:intergenic | 40.0% | |
| AATAGGATCATTGCATCCCT+TGG | + | chr3.1:38364828-38364847 | None:intergenic | 40.0% | |
| AGATATCAGGATGTGTGTTC+AGG | - | chr3.1:38363368-38363387 | MS.gene82727:CDS | 40.0% | |
| ATGATGTGGGAACACAATAC+AGG | - | chr3.1:38364615-38364634 | MS.gene82727:CDS | 40.0% | |
| ATGGATTCATCCATTGCTCA+AGG | - | chr3.1:38363200-38363219 | MS.gene82727:CDS | 40.0% | |
| CAACAATACCTTGAGAAAGG+TGG | - | chr3.1:38364776-38364795 | MS.gene82727:CDS | 40.0% | |
| CTAGGCTAACTAGTTCGATA+TGG | - | chr3.1:38364367-38364386 | MS.gene82727:intron | 40.0% | |
| GAACACACATCCTGATATCT+TGG | + | chr3.1:38363368-38363387 | None:intergenic | 40.0% | |
| GACTGAGTCTTGAATTATCG+AGG | - | chr3.1:38364312-38364331 | MS.gene82727:intron | 40.0% | |
| GAGTCTTGAATTATCGAGGT+TGG | - | chr3.1:38364316-38364335 | MS.gene82727:intron | 40.0% | |
| GATATCAGGATGTGTGTTCA+GGG | - | chr3.1:38363369-38363388 | MS.gene82727:CDS | 40.0% | |
| GATGGTATGTATCAGTGGTA+TGG | + | chr3.1:38363930-38363949 | None:intergenic | 40.0% | |
| TATGTATCAGTGGTATGGCT+TGG | + | chr3.1:38363925-38363944 | None:intergenic | 40.0% | |
| TGACTCTGATGAAGAGACAA+AGG | + | chr3.1:38364428-38364447 | None:intergenic | 40.0% | |
| TTCTGCTCTGTAGAACTTCT+TGG | + | chr3.1:38364747-38364766 | None:intergenic | 40.0% | |
| !! | AACTTGTTAGGAGGAGTCAT+TGG | + | chr3.1:38363713-38363732 | None:intergenic | 40.0% |
| AGACTCTGCTTGATGTGTTC+TGG | - | chr3.1:38363450-38363469 | MS.gene82727:intron | 45.0% | |
| ATGCAACAGGGGAATGATGT+GGG | - | chr3.1:38364602-38364621 | MS.gene82727:CDS | 45.0% | |
| CACAAGGGCAACAGAAAAGA+TGG | - | chr3.1:38363181-38363200 | MS.gene82727:CDS | 45.0% | |
| CGCAAACAATCTTCCTCCAA+GGG | - | chr3.1:38364809-38364828 | MS.gene82727:CDS | 45.0% | |
| GACTCTGCTTGATGTGTTCT+GGG | - | chr3.1:38363451-38363470 | MS.gene82727:intron | 45.0% | |
| GATCAACAGTTTGCCCAGTT+TGG | - | chr3.1:38363248-38363267 | MS.gene82727:CDS | 45.0% | |
| GCAAAAGCGGTGTGCTTTAA+GGG | + | chr3.1:38364469-38364488 | None:intergenic | 45.0% | |
| GCAAACTGTTGATCTAGTGC+TGG | + | chr3.1:38363242-38363261 | None:intergenic | 45.0% | |
| GGTGTGATGGTATGTATCAG+TGG | + | chr3.1:38363935-38363954 | None:intergenic | 45.0% | |
| TATGCAACAGGGGAATGATG+TGG | - | chr3.1:38364601-38364620 | MS.gene82727:CDS | 45.0% | |
| TCGCAAACAATCTTCCTCCA+AGG | - | chr3.1:38364808-38364827 | MS.gene82727:CDS | 45.0% | |
| TGTAGAACTTCTTGGCAGGA+AGG | + | chr3.1:38364739-38364758 | None:intergenic | 45.0% | |
| TTCAGGGACCACAAGACATT+CGG | - | chr3.1:38363385-38363404 | MS.gene82727:intron | 45.0% | |
| TTGGATTATGCAAAAGCCCC+TGG | + | chr3.1:38363349-38363368 | None:intergenic | 45.0% | |
| ! | GTTTGTTGAGGTACTTGCCT+AGG | - | chr3.1:38363755-38363774 | MS.gene82727:intron | 45.0% |
| ! | TGTACTTGCTGAACAGGCTT+TGG | - | chr3.1:38363150-38363169 | MS.gene82727:CDS | 45.0% |
| ! | TTGCTGAACAGGCTTTGGTT+TGG | - | chr3.1:38363155-38363174 | MS.gene82727:CDS | 45.0% |
| !! | ATGTACCTGTCGATTCAGTG+TGG | + | chr3.1:38363492-38363511 | None:intergenic | 45.0% |
| !! | GCTTTGGTTTGGTAGCACAA+GGG | - | chr3.1:38363166-38363185 | MS.gene82727:CDS | 45.0% |
| AGGACGATGTGTAGGTGTGA+TGG | + | chr3.1:38363948-38363967 | None:intergenic | 50.0% | |
| AGGATCATTGCATCCCTTGG+AGG | + | chr3.1:38364825-38364844 | None:intergenic | 50.0% | |
| CAAATCGGCCACCTTTCTCA+AGG | + | chr3.1:38364787-38364806 | None:intergenic | 50.0% | |
| CTTGAGAAAGGTGGCCGATT+TGG | - | chr3.1:38364785-38364804 | MS.gene82727:CDS | 50.0% | |
| GAAAGCAGCGCAAGAATCGT+TGG | - | chr3.1:38364670-38364689 | MS.gene82727:CDS | 50.0% | |
| GACAACCTCCGAATGTCTTG+TGG | + | chr3.1:38363396-38363415 | None:intergenic | 50.0% | |
| GCTATAACCAACCTCGGTCT+TGG | + | chr3.1:38363327-38363346 | None:intergenic | 50.0% | |
| GCTCTGTAGAACTTCTTGGC+AGG | + | chr3.1:38364743-38364762 | None:intergenic | 50.0% | |
| GGCAAAAGCGGTGTGCTTTA+AGG | + | chr3.1:38364470-38364489 | None:intergenic | 50.0% | |
| GTCATCTGGTCCTTGAGCAA+TGG | + | chr3.1:38363213-38363232 | None:intergenic | 50.0% | |
| GTGGGAACACAATACAGGTC+TGG | - | chr3.1:38364620-38364639 | MS.gene82727:CDS | 50.0% | |
| TCCTACCACACTGAATCGAC+AGG | - | chr3.1:38363484-38363503 | MS.gene82727:intron | 50.0% | |
| ! | ACCGAGGTTGGTTATAGCCA+GGG | - | chr3.1:38363329-38363348 | MS.gene82727:CDS | 50.0% |
| ! | CGCTGCTTTCTCTTGTTCAG+GGG | + | chr3.1:38364660-38364679 | None:intergenic | 50.0% |
| ! | GCGCTGCTTTCTCTTGTTCA+GGG | + | chr3.1:38364661-38364680 | None:intergenic | 50.0% |
| ! | TGCGCTGCTTTCTCTTGTTC+AGG | + | chr3.1:38364662-38364681 | None:intergenic | 50.0% |
| !! | ACCTGTCGATTCAGTGTGGT+AGG | + | chr3.1:38363488-38363507 | None:intergenic | 50.0% |
| !! | AGTGCTGGTGTGTTGTCATC+TGG | + | chr3.1:38363227-38363246 | None:intergenic | 50.0% |
| !! | GGCTTTGGTTTGGTAGCACA+AGG | - | chr3.1:38363165-38363184 | MS.gene82727:CDS | 50.0% |
| !!! | CTGCTTTTGGAGTGTCGAGT+TGG | - | chr3.1:38363277-38363296 | MS.gene82727:CDS | 50.0% |
| AAAAGCAGCCGGCACCAAAC+TGG | + | chr3.1:38363265-38363284 | None:intergenic | 55.0% | |
| AAAGCAGCCGGCACCAAACT+GGG | + | chr3.1:38363264-38363283 | None:intergenic | 55.0% | |
| AGGGACCACAAGACATTCGG+AGG | - | chr3.1:38363388-38363407 | MS.gene82727:intron | 55.0% | |
| CCCCTGGCTATAACCAACCT+CGG | + | chr3.1:38363333-38363352 | None:intergenic | 55.0% | |
| CTCGACACTCCAAAAGCAGC+CGG | + | chr3.1:38363276-38363295 | None:intergenic | 55.0% | |
| ! | CCGAGGTTGGTTATAGCCAG+GGG | - | chr3.1:38363330-38363349 | MS.gene82727:CDS | 55.0% |
| ! | GACCGAGGTTGGTTATAGCC+AGG | - | chr3.1:38363328-38363347 | MS.gene82727:CDS | 55.0% |
| !! | CAGTTTGCCCAGTTTGGTGC+CGG | - | chr3.1:38363254-38363273 | MS.gene82727:CDS | 55.0% |
| !!! | AGTTTGGTGCCGGCTGCTTT+TGG | - | chr3.1:38363264-38363283 | MS.gene82727:CDS | 55.0% |
| TGGCCTTCCAGAGAGTGGCT+GGG | - | chr3.1:38363297-38363316 | MS.gene82727:CDS | 60.0% | |
| ! | TTGGCCTTCCAGAGAGTGGC+TGG | - | chr3.1:38363296-38363315 | MS.gene82727:CDS | 60.0% |
| !! | CGAGTTGGCCTTCCAGAGAG+TGG | - | chr3.1:38363292-38363311 | MS.gene82727:CDS | 60.0% |
| CACCCCAGCCACTCTCTGGA+AGG | + | chr3.1:38363303-38363322 | None:intergenic | 65.0% | |
| GGCCTTCCAGAGAGTGGCTG+GGG | - | chr3.1:38363298-38363317 | MS.gene82727:CDS | 65.0% | |
| GGGGTGACCAAGACCGAGGT+TGG | - | chr3.1:38363317-38363336 | MS.gene82727:CDS | 65.0% | |
| TGGTCACCCCAGCCACTCTC+TGG | + | chr3.1:38363307-38363326 | None:intergenic | 65.0% | |
| GGCTGGGGTGACCAAGACCG+AGG | - | chr3.1:38363313-38363332 | MS.gene82727:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 38363149 | 38364862 | 38363149 | ID=MS.gene82727 |
| chr3.1 | mRNA | 38363149 | 38364862 | 38363149 | ID=MS.gene82727.t1;Parent=MS.gene82727 |
| chr3.1 | exon | 38364506 | 38364862 | 38364506 | ID=MS.gene82727.t1.exon1;Parent=MS.gene82727.t1 |
| chr3.1 | CDS | 38364506 | 38364862 | 38364506 | ID=cds.MS.gene82727.t1;Parent=MS.gene82727.t1 |
| chr3.1 | exon | 38363149 | 38363400 | 38363149 | ID=MS.gene82727.t1.exon2;Parent=MS.gene82727.t1 |
| chr3.1 | CDS | 38363149 | 38363400 | 38363149 | ID=cds.MS.gene82727.t1;Parent=MS.gene82727.t1 |
| Gene Sequence |
| Protein sequence |
