Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008088.t1 | XP_003600853.1 | 99.7 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 5.80E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008088.t1 | P46283 | 80.5 | 394 | 69 | 3 | 1 | 387 | 1 | 393 | 4.8e-181 | 635.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008088.t1 | G7JAP0 | 99.7 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 4.2e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008088 | MS.gene013587 | PPI |
| MS.gene008088 | MS.gene06919 | PPI |
| MS.gene008088 | MS.gene06703 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008088.t1 | MTR_3g070100 | 99.742 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 0.0 | 792 |
| MS.gene008088.t1 | MTR_2g008030 | 31.915 | 282 | 167 | 10 | 116 | 379 | 67 | 341 | 4.45e-23 | 99.4 |
| MS.gene008088.t1 | MTR_0776s0010 | 25.389 | 386 | 238 | 14 | 13 | 364 | 241 | 610 | 2.88e-20 | 93.6 |
| MS.gene008088.t1 | MTR_7g066120 | 28.720 | 289 | 171 | 9 | 115 | 371 | 125 | 410 | 4.88e-20 | 91.3 |
| MS.gene008088.t1 | MTR_6g035305 | 28.253 | 269 | 165 | 8 | 116 | 364 | 67 | 327 | 2.02e-18 | 85.9 |
| MS.gene008088.t1 | MTR_4g093620 | 26.761 | 284 | 167 | 14 | 120 | 378 | 124 | 391 | 1.56e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008088.t1 | AT3G55800 | 79.949 | 394 | 71 | 3 | 1 | 387 | 1 | 393 | 0.0 | 647 |
| MS.gene008088.t1 | AT1G43670 | 31.061 | 264 | 164 | 5 | 116 | 364 | 67 | 327 | 1.50e-22 | 97.8 |
| MS.gene008088.t1 | AT5G64380 | 25.786 | 318 | 183 | 14 | 86 | 368 | 90 | 389 | 1.37e-14 | 75.1 |
Find 99 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCTAGCACAGATTTA+TGG | 0.166276 | 3.3:-61337906 | None:intergenic |
| TTGAAATCAAGCTCTTTATT+TGG | 0.186892 | 3.3:+61335382 | MS.gene008088:CDS |
| ACACAATGTGTTAACTCTTT+TGG | 0.201562 | 3.3:+61335775 | MS.gene008088:CDS |
| TCACTCCCTCTTCTGCCTTC+AGG | 0.230507 | 3.3:+61335187 | MS.gene008088:CDS |
| GTCATAACCAAATGCGAAAT+TGG | 0.262915 | 3.3:+61335466 | MS.gene008088:CDS |
| CAATTGATATTTCAGGAAAA+TGG | 0.276601 | 3.3:+61337339 | MS.gene008088:intron |
| CACTTATGTACTTGCACTTA+AGG | 0.290701 | 3.3:+61337128 | MS.gene008088:CDS |
| GATAGAACTCAAGTTGCTTA+TGG | 0.316106 | 3.3:+61337946 | MS.gene008088:CDS |
| GTCAAAGAGACTCATGAAAT+TGG | 0.322823 | 3.3:+61337368 | MS.gene008088:CDS |
| CACTCCCTCTTCTGCCTTCA+GGG | 0.336824 | 3.3:+61335188 | MS.gene008088:CDS |
| TTCACAGTAGGCACCATCTT+TGG | 0.339734 | 3.3:+61337024 | MS.gene008088:CDS |
| GTTGCATTTGACCCTCTTGA+TGG | 0.343626 | 3.3:+61336979 | MS.gene008088:CDS |
| GATCAAAGAATGAGGTCATT+AGG | 0.344384 | 3.3:+61337968 | MS.gene008088:CDS |
| AACGTGGCTCTCAAATTTCC+AGG | 0.345781 | 3.3:-61337410 | None:intergenic |
| ACTGTCGCCAATTTCGCATT+TGG | 0.348976 | 3.3:-61335473 | None:intergenic |
| TTGTTTGAGGTAGCTCCATT+AGG | 0.352175 | 3.3:+61337844 | MS.gene008088:CDS |
| AGAGGGAGTGATGGAGGGTA+GGG | 0.378558 | 3.3:-61335175 | None:intergenic |
| CTCAACTTGGCTTTGGCAGT+TGG | 0.380041 | 3.3:-61337817 | None:intergenic |
| AAGAGGGAGTGATGGAGGGT+AGG | 0.386970 | 3.3:-61335176 | None:intergenic |
| CAGATTATTGTAAAAGAAAA+GGG | 0.391090 | 3.3:+61337772 | MS.gene008088:intron |
| GCAGATTATTGTAAAAGAAA+AGG | 0.393674 | 3.3:+61337771 | MS.gene008088:intron |
| CCTCCCATGTCTTGAAGCTC+AGG | 0.399582 | 3.3:-61336829 | None:intergenic |
| GATAAGTTGATTGGAGTAAC+AGG | 0.403692 | 3.3:+61337060 | MS.gene008088:CDS |
| GATGGAGGGTAGGGAGTGTT+TGG | 0.409911 | 3.3:-61335166 | None:intergenic |
| GGCAGAAGAGGGAGTGATGG+AGG | 0.413966 | 3.3:-61335181 | None:intergenic |
| GCAAGTACATAAGTGGTTCT+AGG | 0.415518 | 3.3:-61337120 | None:intergenic |
| AATTATGACATACCATCAAC+TGG | 0.427130 | 3.3:-61336853 | None:intergenic |
| ATGCGAAATTGGCGACAGTT+TGG | 0.435500 | 3.3:+61335477 | MS.gene008088:CDS |
| CAACAGTCTCAACTTGGCTT+TGG | 0.442108 | 3.3:-61337824 | None:intergenic |
| TAAGGGACTGATTAGGTTGA+TGG | 0.455534 | 3.3:+61335690 | MS.gene008088:CDS |
| AGATCAAGTTGCTGCAGCTA+TGG | 0.458553 | 3.3:+61337086 | MS.gene008088:CDS |
| AGGTTTGAAGAAACATTGTA+TGG | 0.459432 | 3.3:+61337988 | MS.gene008088:CDS |
| GTCAAAGGCGACACCGGATA+AGG | 0.461477 | 3.3:+61335672 | MS.gene008088:CDS |
| GACATGGGAGGTCCAGTTGA+TGG | 0.468525 | 3.3:+61336841 | MS.gene008088:CDS |
| TCAAAGGCGACACCGGATAA+GGG | 0.472586 | 3.3:+61335673 | MS.gene008088:CDS |
| AACCTAATCAGTCCCTTATC+CGG | 0.476945 | 3.3:-61335685 | None:intergenic |
| GCAGAAGTGAGAGTGTTTCA+AGG | 0.477074 | 3.3:-61336782 | None:intergenic |
| GAATTTCTACTTCTTGATGA+AGG | 0.478553 | 3.3:+61337168 | MS.gene008088:CDS |
| GAAGGCAGAAGAGGGAGTGA+TGG | 0.480102 | 3.3:-61335184 | None:intergenic |
| GCTTAAGCACTTGCTCCAAC+AGG | 0.481475 | 3.3:-61338036 | None:intergenic |
| GGACTCTTGATTGAAAATGC+TGG | 0.481565 | 3.3:+61337865 | MS.gene008088:CDS |
| AGTAGAAATTCATGAGTGCC+GGG | 0.495020 | 3.3:-61337156 | None:intergenic |
| AAGTAGAAATTCATGAGTGC+CGG | 0.495327 | 3.3:-61337157 | None:intergenic |
| CTCAAACAACAGTCTCAACT+TGG | 0.497480 | 3.3:-61337830 | None:intergenic |
| AACATCCGGCACCATTCCTC+CGG | 0.502390 | 3.3:-61337588 | None:intergenic |
| TAGGCACCATCTTTGGTGTA+TGG | 0.505757 | 3.3:+61337031 | MS.gene008088:CDS |
| CTTAAGTGCAAGTACATAAG+TGG | 0.510456 | 3.3:-61337127 | None:intergenic |
| GATCAAGTTGCTGCAGCTAT+GGG | 0.517665 | 3.3:+61337087 | MS.gene008088:CDS |
| ACCATCTTTGGTGTATGGCC+TGG | 0.525808 | 3.3:+61337036 | MS.gene008088:CDS |
| CACCGGATAAGGGACTGATT+AGG | 0.526285 | 3.3:+61335683 | MS.gene008088:CDS |
| CAAGTTGAGACTGTTGTTTG+AGG | 0.526367 | 3.3:+61337831 | MS.gene008088:CDS |
| TGGCCTGGTGATAAGTTGAT+TGG | 0.529285 | 3.3:+61337051 | MS.gene008088:CDS |
| ACCAGGCCATACACCAAAGA+TGG | 0.537327 | 3.3:-61337037 | None:intergenic |
| GCAGAAGAGGGAGTGATGGA+GGG | 0.545840 | 3.3:-61335180 | None:intergenic |
| GTAGGAAGAATTCTTGTCAA+AGG | 0.549312 | 3.3:+61335657 | MS.gene008088:intron |
| GATTAGGTTGATGGTGTGCA+TGG | 0.550231 | 3.3:+61335699 | MS.gene008088:CDS |
| CTCAAGGGTGGTGTACCTGT+TGG | 0.557393 | 3.3:+61338021 | MS.gene008088:CDS |
| CTTGCACTTAAGGACTTCCC+CGG | 0.558366 | 3.3:+61337138 | MS.gene008088:CDS |
| AAAAGAACCTGGTTAACATC+CGG | 0.559892 | 3.3:-61337602 | None:intergenic |
| GAAGGAAAACTATTCTCCCC+TGG | 0.564395 | 3.3:+61337392 | MS.gene008088:CDS |
| GCAACTTGCAGTGGATATGC+TGG | 0.564658 | 3.3:+61335804 | MS.gene008088:CDS |
| AATGGTGCCGGATGTTAACC+AGG | 0.565507 | 3.3:+61337595 | MS.gene008088:CDS |
| AAACATTGTATGGTTCATCA+AGG | 0.565959 | 3.3:+61337998 | MS.gene008088:CDS |
| GTATGGTTCATCAAGGCTCA+AGG | 0.566669 | 3.3:+61338005 | MS.gene008088:CDS |
| AATCCCTGAGCTTCAAGACA+TGG | 0.568565 | 3.3:+61336825 | MS.gene008088:CDS |
| GCTGGAGGTTACAGCAGTGA+TGG | 0.571612 | 3.3:+61337883 | MS.gene008088:CDS |
| ATTGAGATACACCGGAGGAA+TGG | 0.572312 | 3.3:+61337577 | MS.gene008088:CDS |
| CCATAAATCTGTGCTAGACA+AGG | 0.577457 | 3.3:+61337906 | MS.gene008088:CDS |
| TGACAATGCAGATTATGCTA+AGG | 0.577947 | 3.3:+61337433 | MS.gene008088:CDS |
| ACATGCTATACTAGTTTCCA+TGG | 0.581877 | 3.3:-61335109 | None:intergenic |
| TATTATTGTGCATACCCTGA+AGG | 0.582360 | 3.3:-61335202 | None:intergenic |
| GTAGACACAAATTTCACAGT+AGG | 0.585426 | 3.3:+61337012 | MS.gene008088:CDS |
| TGGGGATGAGCAACTTGCAG+TGG | 0.586212 | 3.3:+61335795 | MS.gene008088:CDS |
| ATCCCTGAGCTTCAAGACAT+GGG | 0.586854 | 3.3:+61336826 | MS.gene008088:CDS |
| ATTCTTGTCAAAGGCGACAC+CGG | 0.589868 | 3.3:+61335666 | MS.gene008088:CDS |
| ACTACGAAGAAAAGCACCAC+TGG | 0.593568 | 3.3:-61335136 | None:intergenic |
| CTCCCATGTCTTGAAGCTCA+GGG | 0.593677 | 3.3:-61336828 | None:intergenic |
| GTGAAGACAGCTTCTTGTGG+TGG | 0.596604 | 3.3:+61335751 | MS.gene008088:CDS |
| CATACCCTGAAGGCAGAAGA+GGG | 0.598076 | 3.3:-61335192 | None:intergenic |
| GAGACTCATGAAATTGGTGA+AGG | 0.599892 | 3.3:+61337374 | MS.gene008088:CDS |
| TATGGTTCATCAAGGCTCAA+GGG | 0.610673 | 3.3:+61338006 | MS.gene008088:CDS |
| CTCTTGATTGAAAATGCTGG+AGG | 0.611258 | 3.3:+61337868 | MS.gene008088:CDS |
| ACGTGGCTCTCAAATTTCCA+GGG | 0.611538 | 3.3:-61337409 | None:intergenic |
| GCATACCCTGAAGGCAGAAG+AGG | 0.613244 | 3.3:-61335193 | None:intergenic |
| ATACACCGGAGGAATGGTGC+CGG | 0.622946 | 3.3:+61337583 | MS.gene008088:CDS |
| TGCTTATGGATCAAAGAATG+AGG | 0.624161 | 3.3:+61337960 | MS.gene008088:CDS |
| AAATACACATTGAGATACAC+CGG | 0.625848 | 3.3:+61337569 | MS.gene008088:CDS |
| ACTCCAATCAACTTATCACC+AGG | 0.643314 | 3.3:-61337054 | None:intergenic |
| AGTATAGCATGTTACTCCAG+TGG | 0.647366 | 3.3:+61335120 | MS.gene008088:CDS |
| ACTATGCTTGAACCATCAAG+AGG | 0.650576 | 3.3:-61336991 | None:intergenic |
| ATTAGGTTGATGGTGTGCAT+GGG | 0.661036 | 3.3:+61335700 | MS.gene008088:CDS |
| AAAGTGAAGACAGCTTCTTG+TGG | 0.674964 | 3.3:+61335748 | MS.gene008088:CDS |
| ATAATCTGCATTGTCAAACG+TGG | 0.681581 | 3.3:-61337426 | None:intergenic |
| CTATGCTTGAACCATCAAGA+GGG | 0.684004 | 3.3:-61336990 | None:intergenic |
| GGTTCATCAAGGCTCAAGGG+TGG | 0.686247 | 3.3:+61338009 | MS.gene008088:CDS |
| GTAGAAATTCATGAGTGCCG+GGG | 0.695072 | 3.3:-61337155 | None:intergenic |
| CGTGGCTCTCAAATTTCCAG+GGG | 0.699176 | 3.3:-61337408 | None:intergenic |
| CCTGAGCTTCAAGACATGGG+AGG | 0.706034 | 3.3:+61336829 | MS.gene008088:CDS |
| TACACATTGAGATACACCGG+AGG | 0.744654 | 3.3:+61337572 | MS.gene008088:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTTTATTTTTTTT+TGG | - | chr3.3:61336590-61336609 | None:intergenic | 0.0% |
| !! | AAACAATTAAAATTTATGAA+AGG | + | chr3.3:61336216-61336235 | MS.gene008088:intron | 10.0% |
| !! | ATGAAATAAAGAAAAAAAAA+AGG | - | chr3.3:61336312-61336331 | None:intergenic | 10.0% |
| !! | TATTTCAATGATTAATTTAT+TGG | + | chr3.3:61335242-61335261 | MS.gene008088:intron | 10.0% |
| !! | AGAGAAAATAAAATTTAACA+AGG | - | chr3.3:61336175-61336194 | None:intergenic | 15.0% |
| !! | GACCAAAAAAAAATAAAAAA+TGG | + | chr3.3:61336705-61336724 | MS.gene008088:intron | 15.0% |
| !!! | ACACAATTTAATTTTAATTG+TGG | - | chr3.3:61336457-61336476 | None:intergenic | 15.0% |
| !!! | ATATATAATTTTTGAGTGTA+TGG | + | chr3.3:61336918-61336937 | MS.gene008088:intron | 15.0% |
| !!! | TGCCATTTTTTATTTTTTTT+TGG | - | chr3.3:61336710-61336729 | None:intergenic | 15.0% |
| !!! | TTTCTTTATTTCATAATAGT+AGG | + | chr3.3:61336318-61336337 | MS.gene008088:intron | 15.0% |
| !! | AATAAAATTTAACAAGGAAG+TGG | - | chr3.3:61336169-61336188 | None:intergenic | 20.0% |
| !! | AATTATCCAATTGATATTTC+AGG | + | chr3.3:61337332-61337351 | MS.gene008088:intron | 20.0% |
| !! | AGATTTATGAGATTCTAATA+AGG | + | chr3.3:61337207-61337226 | MS.gene008088:intron | 20.0% |
| !! | CAGATTATTGTAAAAGAAAA+GGG | + | chr3.3:61337772-61337791 | MS.gene008088:intron | 20.0% |
| !!! | AGTGAAGTAATTTTATATCA+AGG | - | chr3.3:61337661-61337680 | None:intergenic | 20.0% |
| !!! | CAATATTTTTAGTGATAGTT+TGG | - | chr3.3:61336882-61336901 | None:intergenic | 20.0% |
| !!! | TGTTTCTATAAATGAACTTT+AGG | - | chr3.3:61336201-61336220 | None:intergenic | 20.0% |
| ! | ACTAATCTATGTGCATAAAT+TGG | - | chr3.3:61335889-61335908 | None:intergenic | 25.0% |
| ! | AGCTCATGAAAATAATAAGA+TGG | - | chr3.3:61336353-61336372 | None:intergenic | 25.0% |
| ! | ATAGACCAAAAAAATGTTTG+AGG | + | chr3.3:61337285-61337304 | MS.gene008088:intron | 25.0% |
| ! | CAATTGATATTTCAGGAAAA+TGG | + | chr3.3:61337339-61337358 | MS.gene008088:intron | 25.0% |
| ! | GCAGATTATTGTAAAAGAAA+AGG | + | chr3.3:61337771-61337790 | MS.gene008088:intron | 25.0% |
| ! | TGTTGATGTTTGTATATTGT+AGG | + | chr3.3:61335639-61335658 | MS.gene008088:intron | 25.0% |
| ! | TTGAAATCAAGCTCTTTATT+TGG | + | chr3.3:61335382-61335401 | MS.gene008088:CDS | 25.0% |
| !! | AAACTGTTTTCATAAGCTAA+TGG | - | chr3.3:61335612-61335631 | None:intergenic | 25.0% |
| !! | AATCAACACTTAAGTTTTCA+AGG | + | chr3.3:61335428-61335447 | MS.gene008088:CDS | 25.0% |
| !! | ATATTGCATTTTATATGCAG+GGG | + | chr3.3:61336390-61336409 | MS.gene008088:intron | 25.0% |
| !! | ATCAACACTTAAGTTTTCAA+GGG | + | chr3.3:61335429-61335448 | MS.gene008088:CDS | 25.0% |
| !! | CATTTTCCTGAAATATCAAT+TGG | - | chr3.3:61337341-61337360 | None:intergenic | 25.0% |
| !! | GATATTGCATTTTATATGCA+GGG | + | chr3.3:61336389-61336408 | MS.gene008088:intron | 25.0% |
| !!! | AAACATGTTTTGTTATGATG+AGG | + | chr3.3:61336239-61336258 | MS.gene008088:intron | 25.0% |
| !!! | GATTTCCTCAAACATTTTTT+TGG | - | chr3.3:61337293-61337312 | None:intergenic | 25.0% |
| !!! | TAATTTTAATTGTGGAGAAG+TGG | - | chr3.3:61336449-61336468 | None:intergenic | 25.0% |
| AAACATTGTATGGTTCATCA+AGG | + | chr3.3:61337998-61338017 | MS.gene008088:CDS | 30.0% | |
| AAAGCCACATATTCATGTTA+TGG | - | chr3.3:61335938-61335957 | None:intergenic | 30.0% | |
| AAATACACATTGAGATACAC+CGG | + | chr3.3:61337569-61337588 | MS.gene008088:CDS | 30.0% | |
| AATTATGACATACCATCAAC+TGG | - | chr3.3:61336856-61336875 | None:intergenic | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | - | chr3.3:61336512-61336531 | None:intergenic | 30.0% | |
| AGGTTTGAAGAAACATTGTA+TGG | + | chr3.3:61337988-61338007 | MS.gene008088:CDS | 30.0% | |
| GAATTTCTACTTCTTGATGA+AGG | + | chr3.3:61337168-61337187 | MS.gene008088:CDS | 30.0% | |
| TCATAATATACGCATCTAAC+AGG | + | chr3.3:61336946-61336965 | MS.gene008088:intron | 30.0% | |
| ! | ACAATGTGTTAACTCTTTTG+GGG | + | chr3.3:61335777-61335796 | MS.gene008088:CDS | 30.0% |
| ! | ACACAATGTGTTAACTCTTT+TGG | + | chr3.3:61335775-61335794 | MS.gene008088:CDS | 30.0% |
| ! | CACAATGTGTTAACTCTTTT+GGG | + | chr3.3:61335776-61335795 | MS.gene008088:CDS | 30.0% |
| ! | GGATATTGCATTTTATATGC+AGG | + | chr3.3:61336388-61336407 | MS.gene008088:intron | 30.0% |
| ! | TTTTCAATCAAGAGTCCTAA+TGG | - | chr3.3:61337862-61337881 | None:intergenic | 30.0% |
| !! | TTATGCACATAGATTAGTCT+TGG | + | chr3.3:61335891-61335910 | MS.gene008088:intron | 30.0% |
| AAAAGAACCTGGTTAACATC+CGG | - | chr3.3:61337605-61337624 | None:intergenic | 35.0% | |
| AAGTAGAAATTCATGAGTGC+CGG | - | chr3.3:61337160-61337179 | None:intergenic | 35.0% | |
| AATGTGTTGAGAAAAGAACC+TGG | - | chr3.3:61337616-61337635 | None:intergenic | 35.0% | |
| ACATAGTAATCGACCAACTA+AGG | - | chr3.3:61337542-61337561 | None:intergenic | 35.0% | |
| AGTTCTTGTAGGAATCTCAT+TGG | - | chr3.3:61336013-61336032 | None:intergenic | 35.0% | |
| ATAATCTGCATTGTCAAACG+TGG | - | chr3.3:61337429-61337448 | None:intergenic | 35.0% | |
| ATGTTATGGATCCAATGTCT+AGG | - | chr3.3:61335924-61335943 | None:intergenic | 35.0% | |
| CACTTATGTACTTGCACTTA+AGG | + | chr3.3:61337128-61337147 | MS.gene008088:CDS | 35.0% | |
| CATAGTAATCGACCAACTAA+GGG | - | chr3.3:61337541-61337560 | None:intergenic | 35.0% | |
| CTTAAGTGCAAGTACATAAG+TGG | - | chr3.3:61337130-61337149 | None:intergenic | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | - | chr3.3:61336520-61336539 | None:intergenic | 35.0% | |
| GATCAAAGAATGAGGTCATT+AGG | + | chr3.3:61337968-61337987 | MS.gene008088:CDS | 35.0% | |
| GGATCCATAACATGAATATG+TGG | + | chr3.3:61335931-61335950 | MS.gene008088:intron | 35.0% | |
| GTAGACACAAATTTCACAGT+AGG | + | chr3.3:61337012-61337031 | MS.gene008088:CDS | 35.0% | |
| GTAGGAAGAATTCTTGTCAA+AGG | + | chr3.3:61335657-61335676 | MS.gene008088:intron | 35.0% | |
| GTCAAAGAGACTCATGAAAT+TGG | + | chr3.3:61337368-61337387 | MS.gene008088:CDS | 35.0% | |
| GTCATAACCAAATGCGAAAT+TGG | + | chr3.3:61335466-61335485 | MS.gene008088:CDS | 35.0% | |
| TAATATACGCATCTAACAGG+AGG | + | chr3.3:61336949-61336968 | MS.gene008088:intron | 35.0% | |
| TATTATTGTGCATACCCTGA+AGG | - | chr3.3:61335205-61335224 | None:intergenic | 35.0% | |
| TGACAATGCAGATTATGCTA+AGG | + | chr3.3:61337433-61337452 | MS.gene008088:CDS | 35.0% | |
| TGCTTATGGATCAAAGAATG+AGG | + | chr3.3:61337960-61337979 | MS.gene008088:CDS | 35.0% | |
| ! | GATAGAACTCAAGTTGCTTA+TGG | + | chr3.3:61337946-61337965 | MS.gene008088:CDS | 35.0% |
| ! | GGCTAACAATCTTCTTTTTG+AGG | + | chr3.3:61335825-61335844 | MS.gene008088:CDS | 35.0% |
| ! | TGAATATGTGGCTTTTATGC+AGG | + | chr3.3:61335943-61335962 | MS.gene008088:intron | 35.0% |
| !! | GATAAGTTGATTGGAGTAAC+AGG | + | chr3.3:61337060-61337079 | MS.gene008088:CDS | 35.0% |
| !! | TTCGTTTTTCATCCCTTAGT+TGG | + | chr3.3:61337526-61337545 | MS.gene008088:intron | 35.0% |
| AAAGTGAAGACAGCTTCTTG+TGG | + | chr3.3:61335748-61335767 | MS.gene008088:CDS | 40.0% | |
| AACCTAATCAGTCCCTTATC+CGG | - | chr3.3:61335688-61335707 | None:intergenic | 40.0% | |
| AAGGCCTGTGCATAGAAATT+TGG | - | chr3.3:61336766-61336785 | None:intergenic | 40.0% | |
| ACTATGCTTGAACCATCAAG+AGG | - | chr3.3:61336994-61337013 | None:intergenic | 40.0% | |
| ACTCCAATCAACTTATCACC+AGG | - | chr3.3:61337057-61337076 | None:intergenic | 40.0% | |
| AGGTGTGGAAAAGTTCTTGT+AGG | - | chr3.3:61336024-61336043 | None:intergenic | 40.0% | |
| AGTAGAAATTCATGAGTGCC+GGG | - | chr3.3:61337159-61337178 | None:intergenic | 40.0% | |
| AGTATAGCATGTTACTCCAG+TGG | + | chr3.3:61335120-61335139 | MS.gene008088:CDS | 40.0% | |
| CCATAAATCTGTGCTAGACA+AGG | + | chr3.3:61337906-61337925 | MS.gene008088:CDS | 40.0% | |
| CCTTGTCTAGCACAGATTTA+TGG | - | chr3.3:61337909-61337928 | None:intergenic | 40.0% | |
| CTATGCTTGAACCATCAAGA+GGG | - | chr3.3:61336993-61337012 | None:intergenic | 40.0% | |
| CTCAAACAACAGTCTCAACT+TGG | - | chr3.3:61337833-61337852 | None:intergenic | 40.0% | |
| CTCTTGATTGAAAATGCTGG+AGG | + | chr3.3:61337868-61337887 | MS.gene008088:CDS | 40.0% | |
| CTTCGGGATAACACACTTAA+AGG | + | chr3.3:61336052-61336071 | MS.gene008088:intron | 40.0% | |
| GAGACTCATGAAATTGGTGA+AGG | + | chr3.3:61337374-61337393 | MS.gene008088:CDS | 40.0% | |
| GCAAGTACATAAGTGGTTCT+AGG | - | chr3.3:61337123-61337142 | None:intergenic | 40.0% | |
| GGACTCTTGATTGAAAATGC+TGG | + | chr3.3:61337865-61337884 | MS.gene008088:CDS | 40.0% | |
| GTCACCAAATTTCTATGCAC+AGG | + | chr3.3:61336759-61336778 | MS.gene008088:intron | 40.0% | |
| TATGGTTCATCAAGGCTCAA+GGG | + | chr3.3:61338006-61338025 | MS.gene008088:CDS | 40.0% | |
| TGGATCCAATGTCTAGGAAT+TGG | - | chr3.3:61335918-61335937 | None:intergenic | 40.0% | |
| TGGTGAGTTACTTACATGTG+TGG | + | chr3.3:61335497-61335516 | MS.gene008088:intron | 40.0% | |
| TTAATTGTGGAGAAGTGGAG+TGG | - | chr3.3:61336444-61336463 | None:intergenic | 40.0% | |
| TTGGTCCAATTCCTAGACAT+TGG | + | chr3.3:61335910-61335929 | MS.gene008088:intron | 40.0% | |
| TTTCATGAGCTTAGCTCAGT+TGG | + | chr3.3:61336362-61336381 | MS.gene008088:intron | 40.0% | |
| ! | CAAGTTGAGACTGTTGTTTG+AGG | + | chr3.3:61337831-61337850 | MS.gene008088:CDS | 40.0% |
| ! | TTGTTTGAGGTAGCTCCATT+AGG | + | chr3.3:61337844-61337863 | MS.gene008088:CDS | 40.0% |
| !! | ATTAGGTTGATGGTGTGCAT+GGG | + | chr3.3:61335700-61335719 | MS.gene008088:CDS | 40.0% |
| !! | TAAGGGACTGATTAGGTTGA+TGG | + | chr3.3:61335690-61335709 | MS.gene008088:CDS | 40.0% |
| !! | TTTTTGGTCAAGTAGCCTAG+TGG | - | chr3.3:61336574-61336593 | None:intergenic | 40.0% |
| AACGTGGCTCTCAAATTTCC+AGG | - | chr3.3:61337413-61337432 | None:intergenic | 45.0% | |
| AATCCCTGAGCTTCAAGACA+TGG | + | chr3.3:61336825-61336844 | MS.gene008088:CDS | 45.0% | |
| ACGTGGCTCTCAAATTTCCA+GGG | - | chr3.3:61337412-61337431 | None:intergenic | 45.0% | |
| ACTGTCGCCAATTTCGCATT+TGG | - | chr3.3:61335476-61335495 | None:intergenic | 45.0% | |
| AGTATTGTGGAGAAGTGGAG+TGG | - | chr3.3:61336489-61336508 | None:intergenic | 45.0% | |
| ATCCCTGAGCTTCAAGACAT+GGG | + | chr3.3:61336826-61336845 | MS.gene008088:CDS | 45.0% | |
| ATGAGCTTAGCTCAGTTGGT+AGG | + | chr3.3:61336366-61336385 | MS.gene008088:intron | 45.0% | |
| ATGCGAAATTGGCGACAGTT+TGG | + | chr3.3:61335477-61335496 | MS.gene008088:CDS | 45.0% | |
| ATTCTTGTCAAAGGCGACAC+CGG | + | chr3.3:61335666-61335685 | MS.gene008088:CDS | 45.0% | |
| ATTGAGATACACCGGAGGAA+TGG | + | chr3.3:61337577-61337596 | MS.gene008088:CDS | 45.0% | |
| CAACAGTCTCAACTTGGCTT+TGG | - | chr3.3:61337827-61337846 | None:intergenic | 45.0% | |
| GAAGGAAAACTATTCTCCCC+TGG | + | chr3.3:61337392-61337411 | MS.gene008088:CDS | 45.0% | |
| GTATGGTTCATCAAGGCTCA+AGG | + | chr3.3:61338005-61338024 | MS.gene008088:CDS | 45.0% | |
| GTTGCATTTGACCCTCTTGA+TGG | + | chr3.3:61336979-61336998 | MS.gene008088:CDS | 45.0% | |
| TACACATTGAGATACACCGG+AGG | + | chr3.3:61337572-61337591 | MS.gene008088:CDS | 45.0% | |
| TTCACAGTAGGCACCATCTT+TGG | + | chr3.3:61337024-61337043 | MS.gene008088:CDS | 45.0% | |
| ! | AGATCAAGTTGCTGCAGCTA+TGG | + | chr3.3:61337086-61337105 | MS.gene008088:CDS | 45.0% |
| ! | GATCAAGTTGCTGCAGCTAT+GGG | + | chr3.3:61337087-61337106 | MS.gene008088:CDS | 45.0% |
| ! | GTAGAAATTCATGAGTGCCG+GGG | - | chr3.3:61337158-61337177 | None:intergenic | 45.0% |
| ! | GTTATCCCGAAGTCGATTCT+AGG | - | chr3.3:61336044-61336063 | None:intergenic | 45.0% |
| ! | TAGGCACCATCTTTGGTGTA+TGG | + | chr3.3:61337031-61337050 | MS.gene008088:CDS | 45.0% |
| ! | TCCACACCTAGAATCGACTT+CGG | + | chr3.3:61336035-61336054 | MS.gene008088:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr3.3:61336367-61336386 | MS.gene008088:intron | 45.0% |
| ! | TGCATTTTATATGCAGGGGC+CGG | + | chr3.3:61336394-61336413 | MS.gene008088:intron | 45.0% |
| !! | ACTACGAAGAAAAGCACCAC+TGG | - | chr3.3:61335139-61335158 | None:intergenic | 45.0% |
| !! | AGTGGAGTATTGTGGAGAAG+TGG | - | chr3.3:61336494-61336513 | None:intergenic | 45.0% |
| !! | GATTAGGTTGATGGTGTGCA+TGG | + | chr3.3:61335699-61335718 | MS.gene008088:CDS | 45.0% |
| !! | GCAGAAGTGAGAGTGTTTCA+AGG | - | chr3.3:61336785-61336804 | None:intergenic | 45.0% |
| !! | TGGCCTGGTGATAAGTTGAT+TGG | + | chr3.3:61337051-61337070 | MS.gene008088:CDS | 45.0% |
| !! | TGTGGAGAAGTGGAGTATTG+TGG | - | chr3.3:61336502-61336521 | None:intergenic | 45.0% |
| ACCAGGCCATACACCAAAGA+TGG | - | chr3.3:61337040-61337059 | None:intergenic | 50.0% | |
| CACCGGATAAGGGACTGATT+AGG | + | chr3.3:61335683-61335702 | MS.gene008088:CDS | 50.0% | |
| CATACCCTGAAGGCAGAAGA+GGG | - | chr3.3:61335195-61335214 | None:intergenic | 50.0% | |
| CGTGGCTCTCAAATTTCCAG+GGG | - | chr3.3:61337411-61337430 | None:intergenic | 50.0% | |
| CTCCCATGTCTTGAAGCTCA+GGG | - | chr3.3:61336831-61336850 | None:intergenic | 50.0% | |
| CTTGCACTTAAGGACTTCCC+CGG | + | chr3.3:61337138-61337157 | MS.gene008088:CDS | 50.0% | |
| GCAACTTGCAGTGGATATGC+TGG | + | chr3.3:61335804-61335823 | MS.gene008088:CDS | 50.0% | |
| GCTCACACAAAGTAGCCTAG+TGG | - | chr3.3:61336546-61336565 | None:intergenic | 50.0% | |
| GTGAAGACAGCTTCTTGTGG+TGG | + | chr3.3:61335751-61335770 | MS.gene008088:CDS | 50.0% | |
| TCAAAGGCGACACCGGATAA+GGG | + | chr3.3:61335673-61335692 | MS.gene008088:CDS | 50.0% | |
| TGTGGAGAAGTGGAGAGAAG+TGG | - | chr3.3:61336439-61336458 | None:intergenic | 50.0% | |
| ! | AATGGTGCCGGATGTTAACC+AGG | + | chr3.3:61337595-61337614 | MS.gene008088:CDS | 50.0% |
| ! | ACCATCTTTGGTGTATGGCC+TGG | + | chr3.3:61337036-61337055 | MS.gene008088:CDS | 50.0% |
| ! | CATTTTATATGCAGGGGCCG+GGG | + | chr3.3:61336396-61336415 | MS.gene008088:intron | 50.0% |
| ! | CCACACCTAGAATCGACTTC+GGG | + | chr3.3:61336036-61336055 | MS.gene008088:intron | 50.0% |
| ! | GCATTTTATATGCAGGGGCC+GGG | + | chr3.3:61336395-61336414 | MS.gene008088:intron | 50.0% |
| ! | GCTGCAGCTATGGGAGTTTT+AGG | + | chr3.3:61337096-61337115 | MS.gene008088:CDS | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr3.3:61336471-61336490 | MS.gene008088:intron | 50.0% |
| !! | CTCAACTTGGCTTTGGCAGT+TGG | - | chr3.3:61337820-61337839 | None:intergenic | 50.0% |
| AACATCCGGCACCATTCCTC+CGG | - | chr3.3:61337591-61337610 | None:intergenic | 55.0% | |
| ATACACCGGAGGAATGGTGC+CGG | + | chr3.3:61337583-61337602 | MS.gene008088:CDS | 55.0% | |
| CACTCCCTCTTCTGCCTTCA+GGG | + | chr3.3:61335188-61335207 | MS.gene008088:CDS | 55.0% | |
| CCTCCCATGTCTTGAAGCTC+AGG | - | chr3.3:61336832-61336851 | None:intergenic | 55.0% | |
| CCTGAGCTTCAAGACATGGG+AGG | + | chr3.3:61336829-61336848 | MS.gene008088:CDS | 55.0% | |
| CTCAAGGGTGGTGTACCTGT+TGG | + | chr3.3:61338021-61338040 | MS.gene008088:CDS | 55.0% | |
| GAAGGCAGAAGAGGGAGTGA+TGG | - | chr3.3:61335187-61335206 | None:intergenic | 55.0% | |
| GACATGGGAGGTCCAGTTGA+TGG | + | chr3.3:61336841-61336860 | MS.gene008088:CDS | 55.0% | |
| GCATACCCTGAAGGCAGAAG+AGG | - | chr3.3:61335196-61335215 | None:intergenic | 55.0% | |
| GCTGGAGGTTACAGCAGTGA+TGG | + | chr3.3:61337883-61337902 | MS.gene008088:CDS | 55.0% | |
| GGTTCATCAAGGCTCAAGGG+TGG | + | chr3.3:61338009-61338028 | MS.gene008088:CDS | 55.0% | |
| GTCAAAGGCGACACCGGATA+AGG | + | chr3.3:61335672-61335691 | MS.gene008088:CDS | 55.0% | |
| TCACTCCCTCTTCTGCCTTC+AGG | + | chr3.3:61335187-61335206 | MS.gene008088:CDS | 55.0% | |
| TGGGGATGAGCAACTTGCAG+TGG | + | chr3.3:61335795-61335814 | MS.gene008088:CDS | 55.0% | |
| ! | AAGAGGGAGTGATGGAGGGT+AGG | - | chr3.3:61335179-61335198 | None:intergenic | 55.0% |
| ! | AGAGGGAGTGATGGAGGGTA+GGG | - | chr3.3:61335178-61335197 | None:intergenic | 55.0% |
| ! | CCCGAAGTCGATTCTAGGTG+TGG | - | chr3.3:61336039-61336058 | None:intergenic | 55.0% |
| ! | GCAGAAGAGGGAGTGATGGA+GGG | - | chr3.3:61335183-61335202 | None:intergenic | 55.0% |
| ! | GTGGAGAGAAGTGGAGTGTC+CGG | - | chr3.3:61336430-61336449 | None:intergenic | 55.0% |
| ! | TGGAGAGAAGTGGAGTGTCC+GGG | - | chr3.3:61336429-61336448 | None:intergenic | 55.0% |
| !! | GATGGAGGGTAGGGAGTGTT+TGG | - | chr3.3:61335169-61335188 | None:intergenic | 55.0% |
| GGCAGAAGAGGGAGTGATGG+AGG | - | chr3.3:61335184-61335203 | None:intergenic | 60.0% | |
| ! | GGAGAGAAGTGGAGTGTCCG+GGG | - | chr3.3:61336428-61336447 | None:intergenic | 60.0% |
| AGTGTCCGGGGTTCGAACCC+CGG | - | chr3.3:61336416-61336435 | None:intergenic | 65.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr3.3:61336408-61336427 | MS.gene008088:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 61335111 | 61338056 | 61335111 | ID=MS.gene008088 |
| chr3.3 | mRNA | 61335111 | 61338056 | 61335111 | ID=MS.gene008088.t1;Parent=MS.gene008088 |
| chr3.3 | exon | 61335111 | 61335209 | 61335111 | ID=MS.gene008088.t1.exon1;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61335111 | 61335209 | 61335111 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61335379 | 61335498 | 61335379 | ID=MS.gene008088.t1.exon2;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61335379 | 61335498 | 61335379 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61335661 | 61335846 | 61335661 | ID=MS.gene008088.t1.exon3;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61335661 | 61335846 | 61335661 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61336781 | 61336862 | 61336781 | ID=MS.gene008088.t1.exon4;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61336781 | 61336862 | 61336781 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61336968 | 61337189 | 61336968 | ID=MS.gene008088.t1.exon5;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61336968 | 61337189 | 61336968 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61337354 | 61337454 | 61337354 | ID=MS.gene008088.t1.exon6;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61337354 | 61337454 | 61337354 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61337545 | 61337616 | 61337545 | ID=MS.gene008088.t1.exon7;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61337545 | 61337616 | 61337545 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| chr3.3 | exon | 61337775 | 61338056 | 61337775 | ID=MS.gene008088.t1.exon8;Parent=MS.gene008088.t1 |
| chr3.3 | CDS | 61337775 | 61338056 | 61337775 | ID=cds.MS.gene008088.t1;Parent=MS.gene008088.t1 |
| Gene Sequence |
| Protein sequence |
