Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013587.t1 | XP_003602259.1 | 92.5 | 663 | 26 | 5 | 1 | 647 | 1 | 655 | 0.00E+00 | 1248 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013587.t1 | Q9FNF2 | 69.8 | 600 | 154 | 6 | 68 | 646 | 57 | 650 | 3.4e-256 | 885.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013587.t1 | G7J7E9 | 92.5 | 663 | 26 | 5 | 1 | 647 | 1 | 655 | 0.0e+00 | 1248.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008088 | MS.gene013587 | PPI |
| MS.gene013587 | MS.gene032008 | PPI |
| MS.gene69259 | MS.gene013587 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013587.t1 | MTR_3g091570 | 92.459 | 663 | 26 | 5 | 1 | 647 | 1 | 655 | 0.0 | 1251 |
| MS.gene013587.t1 | MTR_3g091570 | 98.536 | 478 | 7 | 0 | 170 | 647 | 1 | 478 | 0.0 | 992 |
| MS.gene013587.t1 | MTR_6g012380 | 48.337 | 511 | 230 | 8 | 134 | 637 | 268 | 751 | 1.85e-156 | 469 |
| MS.gene013587.t1 | MTR_8g024340 | 40.338 | 533 | 270 | 15 | 126 | 637 | 83 | 588 | 8.02e-111 | 347 |
| MS.gene013587.t1 | MTR_1g078000 | 39.388 | 523 | 273 | 12 | 134 | 637 | 83 | 580 | 1.69e-105 | 332 |
| MS.gene013587.t1 | MTR_4g094595 | 32.031 | 512 | 308 | 15 | 135 | 636 | 493 | 974 | 3.25e-61 | 220 |
| MS.gene013587.t1 | MTR_2g023320 | 31.202 | 516 | 269 | 18 | 134 | 636 | 475 | 917 | 2.61e-51 | 191 |
| MS.gene013587.t1 | MTR_2g023320 | 31.008 | 516 | 270 | 18 | 134 | 636 | 659 | 1101 | 3.43e-51 | 191 |
| MS.gene013587.t1 | MTR_5g030600 | 24.806 | 516 | 316 | 19 | 134 | 627 | 192 | 657 | 5.48e-26 | 113 |
| MS.gene013587.t1 | MTR_7g037650 | 26.066 | 211 | 121 | 6 | 346 | 551 | 49 | 229 | 3.48e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013587.t1 | AT5G24300 | 69.717 | 601 | 155 | 6 | 68 | 647 | 57 | 651 | 0.0 | 863 |
| MS.gene013587.t1 | AT5G24300 | 69.717 | 601 | 155 | 6 | 68 | 647 | 57 | 651 | 0.0 | 863 |
| MS.gene013587.t1 | AT3G01180 | 49.119 | 511 | 226 | 8 | 134 | 637 | 302 | 785 | 5.80e-163 | 487 |
| MS.gene013587.t1 | AT1G32900 | 39.579 | 523 | 272 | 13 | 134 | 637 | 85 | 582 | 2.95e-101 | 322 |
| MS.gene013587.t1 | AT4G18240 | 33.006 | 509 | 307 | 13 | 135 | 636 | 544 | 1025 | 1.03e-65 | 234 |
| MS.gene013587.t1 | AT1G11720 | 31.384 | 513 | 271 | 17 | 134 | 636 | 595 | 1036 | 2.56e-53 | 198 |
| MS.gene013587.t1 | AT1G11720 | 31.712 | 514 | 268 | 18 | 134 | 636 | 647 | 1088 | 2.85e-53 | 198 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTACATATTGCAATT+TGG | 0.109574 | 3.4:+83782600 | MS.gene013587:CDS |
| GCCACCTTGCGTTCTATTTC+CGG | 0.159502 | 3.4:+83778593 | MS.gene013587:CDS |
| TATTCTGCTGACGACCTTTC+TGG | 0.160892 | 3.4:+83783981 | MS.gene013587:CDS |
| CAGAAACTCAAGGGAATTTA+AGG | 0.192171 | 3.4:+83779572 | MS.gene013587:CDS |
| TCCAGAGAGATTGATGATTT+TGG | 0.193799 | 3.4:+83778695 | MS.gene013587:CDS |
| CGCTTGACTCCTCATGATTC+TGG | 0.202062 | 3.4:+83778734 | MS.gene013587:CDS |
| GCAATTACATATTGCAATTT+GGG | 0.229733 | 3.4:+83782601 | MS.gene013587:CDS |
| GAATCAAGTCAATACCTTTC+TGG | 0.244261 | 3.4:-83784252 | None:intergenic |
| AGACAAGCACGGGACGTTTA+AGG | 0.276845 | 3.4:+83780104 | MS.gene013587:CDS |
| TCATATCTGCTTTCAGCAAT+AGG | 0.289960 | 3.4:-83786029 | None:intergenic |
| CCAAAGCAAAATACATTGAT+AGG | 0.297203 | 3.4:-83779847 | None:intergenic |
| ATTGCCTTGCAGAAGGAATT+AGG | 0.300120 | 3.4:+83784102 | MS.gene013587:CDS |
| CTCACGATTCTTACCGCAAT+TGG | 0.320425 | 3.4:+83778544 | MS.gene013587:CDS |
| CATAAGGATTCCCTGGTCTA+TGG | 0.321028 | 3.4:-83780080 | None:intergenic |
| GATACTGTATTGCAGACTTT+TGG | 0.333460 | 3.4:+83780655 | MS.gene013587:intron |
| TGGGATGGGTATTCCCTACT+TGG | 0.338774 | 3.4:+83782650 | MS.gene013587:CDS |
| CATAGACCAGGGAATCCTTA+TGG | 0.351574 | 3.4:+83780081 | MS.gene013587:CDS |
| ATACCAGTAGTTCATGAAAC+AGG | 0.367040 | 3.4:+83785254 | MS.gene013587:CDS |
| AATCATTGAGTGGGCATTCA+TGG | 0.370383 | 3.4:+83786000 | MS.gene013587:CDS |
| TCTTCTGCATTCCCAATCTC+TGG | 0.372149 | 3.4:-83779613 | None:intergenic |
| TAAAGATAAATTTCGTGGTT+GGG | 0.379084 | 3.4:+83784970 | MS.gene013587:CDS |
| CATATCTGCTTTCAGCAATA+GGG | 0.379828 | 3.4:-83786028 | None:intergenic |
| GCCTATTCCTCGTTAATGAT+TGG | 0.380274 | 3.4:+83780314 | MS.gene013587:CDS |
| CCTCCCAATGGAAGCACTAA+TGG | 0.385678 | 3.4:-83780271 | None:intergenic |
| CAGTTGTATGCAATGAGATA+TGG | 0.386711 | 3.4:+83785227 | MS.gene013587:CDS |
| CATATCTCATTGCATACAAC+TGG | 0.389447 | 3.4:-83785226 | None:intergenic |
| TGATCATCTTCGAAGGAAAT+AGG | 0.395191 | 3.4:-83778653 | None:intergenic |
| TCGTCCATATGGGGTATATA+AGG | 0.396089 | 3.4:+83780688 | MS.gene013587:CDS |
| CCGCGACCCGCCAGTGCTAT+TGG | 0.397516 | 3.4:-83779739 | None:intergenic |
| AAATTGCAATATGTAATTGC+AGG | 0.399672 | 3.4:-83782598 | None:intergenic |
| GCAGTTATTCTATGAGATAC+TGG | 0.400477 | 3.4:-83785007 | None:intergenic |
| GCCTTCAGCATTGCATCCTT+CGG | 0.400496 | 3.4:-83785411 | None:intergenic |
| ACAACTACAGAAGGTGGATT+TGG | 0.400949 | 3.4:+83783206 | MS.gene013587:CDS |
| TGCATACACTGAAACTAAAC+TGG | 0.401674 | 3.4:-83780341 | None:intergenic |
| CTCATCCAGTCTTCATATAT+AGG | 0.407433 | 3.4:-83784929 | None:intergenic |
| TTTCAGGTAATGCTTGGTTC+GGG | 0.416000 | 3.4:+83784902 | MS.gene013587:intron |
| ACCAAAATCATCAATCTCTC+TGG | 0.423562 | 3.4:-83778696 | None:intergenic |
| GCATCGCTTCCTCCAGCAAA+TGG | 0.423925 | 3.4:-83785389 | None:intergenic |
| GCATCAAAGTATCGTCCATA+TGG | 0.424357 | 3.4:+83780677 | MS.gene013587:CDS |
| ATAATGAACACAAGTCTTCA+TGG | 0.432708 | 3.4:+83785909 | MS.gene013587:CDS |
| TCAAGAATGGTATGGAGCGC+TGG | 0.437281 | 3.4:+83782630 | MS.gene013587:CDS |
| CCATTGGGAGGGTTCACTTA+CGG | 0.438789 | 3.4:+83780283 | MS.gene013587:CDS |
| CGGGACGTTTAAGGATAATC+AGG | 0.439356 | 3.4:+83780113 | MS.gene013587:CDS |
| CTGAAGAAGTGCGGGTATGA+TGG | 0.440710 | 3.4:-83778490 | None:intergenic |
| ATTCTGCTGACGACCTTTCT+GGG | 0.441080 | 3.4:+83783982 | MS.gene013587:CDS |
| GAACTCACCACTGGACAATC+AGG | 0.442879 | 3.4:-83784138 | None:intergenic |
| GCCAATCATTAACGAGGAAT+AGG | 0.443305 | 3.4:-83780315 | None:intergenic |
| CTTTATAAAGATAAATTTCG+TGG | 0.443734 | 3.4:+83784965 | MS.gene013587:CDS |
| GGTGGCCTTGCAGATGTTTG+TGG | 0.444403 | 3.4:+83779709 | MS.gene013587:CDS |
| ATAGGTCCGTCTGGTGAAGC+AGG | 0.444784 | 3.4:-83778635 | None:intergenic |
| GGGTCGCGGACACCGTGTTA+TGG | 0.449119 | 3.4:+83779753 | MS.gene013587:CDS |
| GATAAATTTCGTGGTTGGGT+TGG | 0.449687 | 3.4:+83784974 | MS.gene013587:CDS |
| GTGTTCATTATATGTTTGAA+TGG | 0.457516 | 3.4:-83785897 | None:intergenic |
| ATAAAGATAAATTTCGTGGT+TGG | 0.461080 | 3.4:+83784969 | MS.gene013587:CDS |
| AAGGTCGTCAGCAGAATAGT+TGG | 0.464673 | 3.4:-83783976 | None:intergenic |
| TGGTTCTTTGCCAATAGCAC+TGG | 0.466231 | 3.4:+83779729 | MS.gene013587:CDS |
| GCATCCTTATATACCCCATA+TGG | 0.470122 | 3.4:-83780692 | None:intergenic |
| GCAGTACCATGTACGTATCT+AGG | 0.472827 | 3.4:-83779784 | None:intergenic |
| GCAATATGTTCATCAGATGA+TGG | 0.474624 | 3.4:-83783951 | None:intergenic |
| CACCCTTCATTCCATAGACC+AGG | 0.479990 | 3.4:+83780069 | MS.gene013587:CDS |
| AGAAGGTGGATTTGGTCTAC+AGG | 0.480693 | 3.4:+83783214 | MS.gene013587:CDS |
| TATCGACCAGGGATCACAAA+TGG | 0.487988 | 3.4:+83783906 | MS.gene013587:intron |
| GGATGCAATGCTGAAGGCAC+GGG | 0.488330 | 3.4:+83785416 | MS.gene013587:CDS |
| TTCTGTAGTTGTTATCTCCC+AGG | 0.489591 | 3.4:-83783195 | None:intergenic |
| TGCTGACGACCTTTCTGGGA+AGG | 0.490242 | 3.4:+83783986 | MS.gene013587:CDS |
| CAACACCTTCTCTATACTCA+TGG | 0.490842 | 3.4:-83779894 | None:intergenic |
| TTCCCTGGTCTATGGAATGA+AGG | 0.492921 | 3.4:-83780072 | None:intergenic |
| AGTATAGAGAAGGTGTTGAC+TGG | 0.493004 | 3.4:+83779899 | MS.gene013587:CDS |
| CCTTCAACATTTGAGCCTTG+TGG | 0.493172 | 3.4:+83785197 | MS.gene013587:CDS |
| AACTTGTAGATTGGATTCGT+TGG | 0.494340 | 3.4:+83784217 | MS.gene013587:intron |
| TTGTCTCCATAAGGATTCCC+TGG | 0.496184 | 3.4:-83780087 | None:intergenic |
| CATCAAAGTATCGTCCATAT+GGG | 0.499600 | 3.4:+83780678 | MS.gene013587:CDS |
| GAAATCCTATATATGAAGAC+TGG | 0.512634 | 3.4:+83784924 | MS.gene013587:CDS |
| CATTAGTGCTTCCATTGGGA+GGG | 0.512771 | 3.4:+83780272 | MS.gene013587:CDS |
| CCAATAGCACTGGCGGGTCG+CGG | 0.513395 | 3.4:+83779739 | MS.gene013587:CDS |
| GGAAGACTTGATTACCAGAA+AGG | 0.515076 | 3.4:+83784238 | MS.gene013587:CDS |
| GTCCCGTGCTTGTCTCCATA+AGG | 0.516878 | 3.4:-83780096 | None:intergenic |
| GACAAAGGAGAGCATGTTAG+TGG | 0.517549 | 3.4:+83785645 | MS.gene013587:CDS |
| TTCTTTGCCAATAGCACTGG+CGG | 0.517880 | 3.4:+83779732 | MS.gene013587:CDS |
| TCGAAGGAAATAGGTCCGTC+TGG | 0.521679 | 3.4:-83778644 | None:intergenic |
| GCACCATTAGTGCTTCCATT+GGG | 0.522997 | 3.4:+83780268 | MS.gene013587:CDS |
| TTTGGAGGCGCTCAAGAAGT+TGG | 0.523145 | 3.4:+83779865 | MS.gene013587:CDS |
| ACATCGTCTTGCATAAGCTC+TGG | 0.524359 | 3.4:-83784286 | None:intergenic |
| GGAAGCACCGTCAGTGTCAC+CGG | 0.524701 | 3.4:-83778612 | None:intergenic |
| GAGAGATTACACCTGGGAAA+AGG | 0.525113 | 3.4:+83785958 | MS.gene013587:CDS |
| CAAAATCAACCTTCCCAGAA+AGG | 0.526917 | 3.4:-83783995 | None:intergenic |
| TGGAATTGATGTTACTGAAT+GGG | 0.528155 | 3.4:+83783926 | MS.gene013587:CDS |
| TGGTGCTTCACATGCTGCAT+GGG | 0.529783 | 3.4:-83780251 | None:intergenic |
| ATGGAATTGATGTTACTGAA+TGG | 0.529859 | 3.4:+83783925 | MS.gene013587:CDS |
| AGGTATTGACTTGATTCGCC+AGG | 0.532994 | 3.4:+83784258 | MS.gene013587:CDS |
| AGCACCATTAGTGCTTCCAT+TGG | 0.535525 | 3.4:+83780267 | MS.gene013587:CDS |
| GCTTCCCCTGCTTCACCAGA+CGG | 0.535866 | 3.4:+83778629 | MS.gene013587:CDS |
| GTATCTCATAGAATAACTGC+AGG | 0.537384 | 3.4:+83785010 | MS.gene013587:CDS |
| CAATTACATATTGCAATTTG+GGG | 0.539126 | 3.4:+83782602 | MS.gene013587:CDS |
| TTGGTATGAGAAGGTCGAGT+TGG | 0.539638 | 3.4:-83778515 | None:intergenic |
| AGGCCACCAGTCTTAGAATA+CGG | 0.539910 | 3.4:-83779694 | None:intergenic |
| CATGTGTCCTCGCCCAAGTA+GGG | 0.540027 | 3.4:-83782663 | None:intergenic |
| AATGGTATGGAGCGCTGGGA+TGG | 0.541131 | 3.4:+83782635 | MS.gene013587:CDS |
| ATTTGGGGCTGCCTCAAGAA+TGG | 0.541394 | 3.4:+83782617 | MS.gene013587:CDS |
| GCATAAGCTCTGGAATTGCC+TGG | 0.541731 | 3.4:-83784276 | None:intergenic |
| GCATGTGTCCTCGCCCAAGT+AGG | 0.545911 | 3.4:-83782664 | None:intergenic |
| CAAGAATGGTATGGAGCGCT+GGG | 0.546441 | 3.4:+83782631 | MS.gene013587:CDS |
| AGGATGCAATGCTGAAGGCA+CGG | 0.547103 | 3.4:+83785415 | MS.gene013587:CDS |
| CCACAAGGCTCAAATGTTGA+AGG | 0.547147 | 3.4:-83785197 | None:intergenic |
| ATGGTATGGAGCGCTGGGAT+GGG | 0.548093 | 3.4:+83782636 | MS.gene013587:CDS |
| CCATTAGTGCTTCCATTGGG+AGG | 0.551894 | 3.4:+83780271 | MS.gene013587:CDS |
| CAAAGCAAAATACATTGATA+GGG | 0.553823 | 3.4:-83779846 | None:intergenic |
| GCTGCACCGTATTCTAAGAC+TGG | 0.565136 | 3.4:+83779688 | MS.gene013587:CDS |
| ATGGTGCTTCACATGCTGCA+TGG | 0.565149 | 3.4:-83780252 | None:intergenic |
| ATCCTTATGGAGACAAGCAC+GGG | 0.566822 | 3.4:+83780094 | MS.gene013587:CDS |
| TGGGAATGCAGAAGATGAGA+AGG | 0.567156 | 3.4:+83779621 | MS.gene013587:CDS |
| ATGTAAAATTGCCTTGCAGA+AGG | 0.568730 | 3.4:+83784095 | MS.gene013587:CDS |
| AGTTGGAGCTGAAGAAGTGC+GGG | 0.569588 | 3.4:-83778498 | None:intergenic |
| GCGCCATTGTTACTGCTGAT+CGG | 0.576090 | 3.4:+83782722 | MS.gene013587:CDS |
| TAAGAATCGTGAGGAACTGT+TGG | 0.578445 | 3.4:-83778534 | None:intergenic |
| GTATGACGAGAGATTACACC+TGG | 0.578921 | 3.4:+83785951 | MS.gene013587:CDS |
| ACTGGACAATCAGGTCGCAC+TGG | 0.579346 | 3.4:-83784129 | None:intergenic |
| AGGACACATGCTCTTGACAC+AGG | 0.582246 | 3.4:+83782676 | MS.gene013587:CDS |
| TCCCTGGTCTATGGAATGAA+GGG | 0.587551 | 3.4:-83780071 | None:intergenic |
| TAATGAACACAAGTCTTCAT+GGG | 0.588417 | 3.4:+83785910 | MS.gene013587:CDS |
| GAACACAAGTCTTCATGGGA+GGG | 0.590428 | 3.4:+83785914 | MS.gene013587:CDS |
| GATTCACAATATTGCACACC+AGG | 0.590518 | 3.4:+83780730 | MS.gene013587:CDS |
| TCTTTGCCAATAGCACTGGC+GGG | 0.593606 | 3.4:+83779733 | MS.gene013587:CDS |
| GAGGAACTGTTGGTATGAGA+AGG | 0.594475 | 3.4:-83778524 | None:intergenic |
| GGGACAACTGCAGAAACTCA+AGG | 0.595408 | 3.4:+83779562 | MS.gene013587:intron |
| TAGGTCCGTCTGGTGAAGCA+GGG | 0.596649 | 3.4:-83778634 | None:intergenic |
| CAATATGTTCATCAGATGAT+GGG | 0.596741 | 3.4:-83783950 | None:intergenic |
| GGGCTGCCTCAAGAATGGTA+TGG | 0.598454 | 3.4:+83782622 | MS.gene013587:CDS |
| AATCCTTATGGAGACAAGCA+CGG | 0.600419 | 3.4:+83780093 | MS.gene013587:CDS |
| TCTATTTCCGGTGACACTGA+CGG | 0.601830 | 3.4:+83778605 | MS.gene013587:CDS |
| GGGTATTCCCTACTTGGGCG+AGG | 0.603588 | 3.4:+83782656 | MS.gene013587:CDS |
| CCGTAAGTGAACCCTCCCAA+TGG | 0.604219 | 3.4:-83780283 | None:intergenic |
| ATCTGCTTTCAGCAATAGGG+TGG | 0.605343 | 3.4:-83786025 | None:intergenic |
| GCCGAAGGATGCAATGCTGA+AGG | 0.605754 | 3.4:+83785410 | MS.gene013587:CDS |
| TACCAGTAGTTCATGAAACA+GGG | 0.607738 | 3.4:+83785255 | MS.gene013587:CDS |
| AATGATTTGCTCGTATTGAG+CGG | 0.611048 | 3.4:-83785984 | None:intergenic |
| ATACGAGCAAATCATTGAGT+GGG | 0.612574 | 3.4:+83785991 | MS.gene013587:CDS |
| GAGATAACAACTACAGAAGG+TGG | 0.613804 | 3.4:+83783200 | MS.gene013587:CDS |
| GTCACCGGAAATAGAACGCA+AGG | 0.614436 | 3.4:-83778597 | None:intergenic |
| AATACGAGCAAATCATTGAG+TGG | 0.616706 | 3.4:+83785990 | MS.gene013587:CDS |
| TCTATCTTGATCATCTTCGA+AGG | 0.627477 | 3.4:-83778660 | None:intergenic |
| TCGGATAGTAACAGTAAGCA+AGG | 0.627715 | 3.4:+83782741 | MS.gene013587:CDS |
| GGGATGGGTATTCCCTACTT+GGG | 0.627869 | 3.4:+83782651 | MS.gene013587:CDS |
| AACATGCTCTCCTTTGTCAG+TGG | 0.633844 | 3.4:-83785640 | None:intergenic |
| TATCCGATCAGCAGTAACAA+TGG | 0.634823 | 3.4:-83782725 | None:intergenic |
| GGACAACTGCAGAAACTCAA+GGG | 0.634989 | 3.4:+83779563 | MS.gene013587:CDS |
| GAGTTGGAGCTGAAGAAGTG+CGG | 0.635111 | 3.4:-83778499 | None:intergenic |
| TGGGAGATAACAACTACAGA+AGG | 0.635680 | 3.4:+83783197 | MS.gene013587:CDS |
| ATCTCTCCTAGATACGTACA+TGG | 0.636965 | 3.4:+83779778 | MS.gene013587:CDS |
| AGGTCCGTCTGGTGAAGCAG+GGG | 0.637766 | 3.4:-83778633 | None:intergenic |
| AAGACCTAATTCCTTCTGCA+AGG | 0.640950 | 3.4:-83784106 | None:intergenic |
| GCTGGAGGAAGCGATGCCGA+AGG | 0.640969 | 3.4:+83785395 | MS.gene013587:CDS |
| AGCGCTCCATACCATTCTTG+AGG | 0.642449 | 3.4:-83782628 | None:intergenic |
| GTATAGAGAAGGTGTTGACT+GGG | 0.646125 | 3.4:+83779900 | MS.gene013587:CDS |
| TACAACTGGTTTAGTCCACA+AGG | 0.649431 | 3.4:-83785212 | None:intergenic |
| TGAACACAAGTCTTCATGGG+AGG | 0.650187 | 3.4:+83785913 | MS.gene013587:CDS |
| ATCAAAGTATCGTCCATATG+GGG | 0.651283 | 3.4:+83780679 | MS.gene013587:CDS |
| ATCATGAGGAGTCAAGCGAA+AGG | 0.653378 | 3.4:-83778729 | None:intergenic |
| AAGAACCACAAACATCTGCA+AGG | 0.663774 | 3.4:-83779714 | None:intergenic |
| GCACCGTATTCTAAGACTGG+TGG | 0.666033 | 3.4:+83779691 | MS.gene013587:CDS |
| GATTTGCTCGTATTGAGCGG+CGG | 0.669443 | 3.4:-83785981 | None:intergenic |
| ACCCTTCATTCCATAGACCA+GGG | 0.674753 | 3.4:+83780070 | MS.gene013587:CDS |
| ACTAGAAAACTTACTATCAG+CGG | 0.677717 | 3.4:-83779806 | None:intergenic |
| AAAGGCATACCAGAATCATG+AGG | 0.679979 | 3.4:-83778743 | None:intergenic |
| ACCAGTAGTTCATGAAACAG+GGG | 0.682127 | 3.4:+83785256 | MS.gene013587:CDS |
| TTAGAAGGGAAAGCCAATTG+CGG | 0.684978 | 3.4:-83778557 | None:intergenic |
| GTATGATGGAGAAAGAGACG+AGG | 0.689249 | 3.4:-83778476 | None:intergenic |
| TATGATGGAGAAAGAGACGA+GGG | 0.695047 | 3.4:-83778475 | None:intergenic |
| GATGCAATGCTGAAGGCACG+GGG | 0.696578 | 3.4:+83785417 | MS.gene013587:CDS |
| TATCTCATAGAATAACTGCA+GGG | 0.703392 | 3.4:+83785011 | MS.gene013587:CDS |
| CCAGTAGTTCATGAAACAGG+GGG | 0.705069 | 3.4:+83785257 | MS.gene013587:CDS |
| ACCGGAAATAGAACGCAAGG+TGG | 0.720708 | 3.4:-83778594 | None:intergenic |
| AGTGCGACCTGATTGTCCAG+TGG | 0.724308 | 3.4:+83784131 | MS.gene013587:CDS |
| TGGCATGCCAATCATTAACG+AGG | 0.731653 | 3.4:-83780321 | None:intergenic |
| TAGGAGAGATAACCATAACA+CGG | 0.743995 | 3.4:-83779765 | None:intergenic |
| CAATTGCGGTAAGAATCGTG+AGG | 0.746620 | 3.4:-83778543 | None:intergenic |
| GATAGAAAGAGTATTCTGAG+CGG | 0.755648 | 3.4:+83783248 | MS.gene013587:CDS |
| TATGACGAGAGATTACACCT+GGG | 0.773744 | 3.4:+83785952 | MS.gene013587:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83778458 | 83786039 | 83778458 | ID=MS.gene013587 |
| chr3.4 | mRNA | 83778458 | 83786039 | 83778458 | ID=MS.gene013587.t1;Parent=MS.gene013587 |
| chr3.4 | exon | 83778458 | 83778755 | 83778458 | ID=MS.gene013587.t1.exon1;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83778458 | 83778755 | 83778458 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83779563 | 83779921 | 83779563 | ID=MS.gene013587.t1.exon2;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83779563 | 83779921 | 83779563 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83780057 | 83780134 | 83780057 | ID=MS.gene013587.t1.exon3;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83780057 | 83780134 | 83780057 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83780232 | 83780356 | 83780232 | ID=MS.gene013587.t1.exon4;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83780232 | 83780356 | 83780232 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83780670 | 83780751 | 83780670 | ID=MS.gene013587.t1.exon5;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83780670 | 83780751 | 83780670 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83782589 | 83782762 | 83782589 | ID=MS.gene013587.t1.exon6;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83782589 | 83782762 | 83782589 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83783188 | 83783269 | 83783188 | ID=MS.gene013587.t1.exon7;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83783188 | 83783269 | 83783188 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83783916 | 83784007 | 83783916 | ID=MS.gene013587.t1.exon8;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83783916 | 83784007 | 83783916 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83784090 | 83784152 | 83784090 | ID=MS.gene013587.t1.exon9;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83784090 | 83784152 | 83784090 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83784226 | 83784315 | 83784226 | ID=MS.gene013587.t1.exon10;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83784226 | 83784315 | 83784226 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83784908 | 83785032 | 83784908 | ID=MS.gene013587.t1.exon11;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83784908 | 83785032 | 83784908 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83785178 | 83785286 | 83785178 | ID=MS.gene013587.t1.exon12;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83785178 | 83785286 | 83785178 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83785368 | 83785438 | 83785368 | ID=MS.gene013587.t1.exon13;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83785368 | 83785438 | 83785368 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83785627 | 83785666 | 83785627 | ID=MS.gene013587.t1.exon14;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83785627 | 83785666 | 83785627 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| chr3.4 | exon | 83785884 | 83786039 | 83785884 | ID=MS.gene013587.t1.exon15;Parent=MS.gene013587.t1 |
| chr3.4 | CDS | 83785884 | 83786039 | 83785884 | ID=cds.MS.gene013587.t1;Parent=MS.gene013587.t1 |
| Gene Sequence |
| Protein sequence |
