Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008140.t1 | XP_003600765.2 | 98.2 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 6.00E-137 | 496.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008140.t1 | Q54TS4 | 34.8 | 198 | 118 | 3 | 78 | 269 | 125 | 317 | 3.4e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008140.t1 | G7J9Z2 | 98.2 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 4.3e-137 | 496.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008140 | MS.gene050864 | PPI |
| MS.gene072464 | MS.gene008140 | PPI |
| MS.gene29330 | MS.gene008140 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008140.t1 | MTR_3g069150 | 98.168 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 0.0 | 543 |
| MS.gene008140.t1 | MTR_3g069170 | 97.917 | 240 | 5 | 0 | 1 | 240 | 1 | 240 | 1.46e-174 | 481 |
| MS.gene008140.t1 | MTR_3g069150 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 6.96e-155 | 432 |
| MS.gene008140.t1 | MTR_5g081040 | 74.725 | 273 | 67 | 2 | 1 | 272 | 1 | 272 | 1.32e-148 | 417 |
| MS.gene008140.t1 | MTR_5g081040 | 80.383 | 209 | 40 | 1 | 65 | 272 | 4 | 212 | 3.53e-122 | 347 |
| MS.gene008140.t1 | MTR_7g113620 | 40.000 | 215 | 121 | 3 | 37 | 245 | 36 | 248 | 5.46e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008140.t1 | AT2G39805 | 61.011 | 277 | 96 | 3 | 4 | 272 | 2 | 274 | 2.39e-116 | 335 |
| MS.gene008140.t1 | AT2G39805 | 60.791 | 278 | 96 | 4 | 4 | 272 | 2 | 275 | 1.94e-114 | 330 |
| MS.gene008140.t1 | AT5G27490 | 38.489 | 278 | 152 | 7 | 8 | 272 | 7 | 278 | 6.48e-55 | 179 |
| MS.gene008140.t1 | AT3G05280 | 36.822 | 258 | 147 | 6 | 11 | 258 | 11 | 262 | 5.75e-48 | 161 |
Find 56 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCATGCAGATGCTTT+TGG | 0.236864 | 3.4:-69390051 | MS.gene008140:intron |
| ATTACAGGTATGGGCTTATA+TGG | 0.245624 | 3.4:-69389005 | MS.gene008140:intron |
| ATGCTAACCTTATACGGTTT+TGG | 0.272157 | 3.4:-69388789 | MS.gene008140:CDS |
| CTGGAACTGATCCGAGTAAA+TGG | 0.284659 | 3.4:+69391095 | None:intergenic |
| CGGAGGCGGAGGCGGACAAC+AGG | 0.291792 | 3.4:-69390670 | MS.gene008140:CDS |
| GTTCAAATGCTAACCTTATA+CGG | 0.310617 | 3.4:-69388795 | MS.gene008140:CDS |
| ACAAGCACCAAAACCGTATA+AGG | 0.349509 | 3.4:+69388782 | None:intergenic |
| TACAGAAGACAAGATGAAAA+TGG | 0.358922 | 3.4:+69388744 | None:intergenic |
| TCCGCCTCCGCCTCCACTGT+TGG | 0.372021 | 3.4:+69390683 | None:intergenic |
| ACGGCTGCATGGTCTATATA+TGG | 0.373238 | 3.4:-69388868 | MS.gene008140:CDS |
| AGTGGAGGCGGAGGCGGAGG+CGG | 0.373465 | 3.4:-69390678 | MS.gene008140:CDS |
| CCGCCTCCGCCTCCACTGTT+GGG | 0.392180 | 3.4:+69390684 | None:intergenic |
| AATGTTTGCATATTTGCATA+AGG | 0.396825 | 3.4:+69390711 | None:intergenic |
| GGCAACAGCCAGCTAATAAC+TGG | 0.407158 | 3.4:-69390029 | MS.gene008140:CDS |
| CCCAACAGTGGAGGCGGAGG+CGG | 0.414258 | 3.4:-69390684 | MS.gene008140:CDS |
| CAAACTCTTGGAACTCCAAC+TGG | 0.420287 | 3.4:-69390642 | MS.gene008140:intron |
| CGTTGCAAAATTTCCAAGTA+AGG | 0.421093 | 3.4:+69388954 | None:intergenic |
| AACAGTGGAGGCGGAGGCGG+AGG | 0.422692 | 3.4:-69390681 | MS.gene008140:CDS |
| TTATTCCAGTTGAGATTCTT+CGG | 0.425394 | 3.4:-69388545 | MS.gene008140:CDS |
| ATGTTTGCATATTTGCATAA+GGG | 0.429062 | 3.4:+69390712 | None:intergenic |
| TGGATCATAATAATCCTTAC+CGG | 0.450308 | 3.4:-69388522 | MS.gene008140:CDS |
| TGATGTTAGCTATGTGAATA+CGG | 0.450659 | 3.4:-69388887 | MS.gene008140:CDS |
| ATCCACCGAAGAATCTCAAC+TGG | 0.453879 | 3.4:+69388540 | None:intergenic |
| TATATATGGCTATGTGATAG+TGG | 0.458907 | 3.4:-69388854 | MS.gene008140:CDS |
| AAATGCATAACTCACAGATC+AGG | 0.466971 | 3.4:+69389880 | None:intergenic |
| GTCATCACCGACTGGATTCA+AGG | 0.474193 | 3.4:+69389927 | None:intergenic |
| AATCCTTGCCAGTTATTAGC+TGG | 0.478284 | 3.4:+69390021 | None:intergenic |
| CTCCGCCTCCACTGTTGGGA+GGG | 0.497926 | 3.4:+69390688 | None:intergenic |
| CAACAGGGATATCAAACTCT+TGG | 0.506858 | 3.4:-69390654 | MS.gene008140:CDS |
| TTCCCTCCCAACAGTGGAGG+CGG | 0.507299 | 3.4:-69390690 | MS.gene008140:CDS |
| CCTCCCAACAGTGGAGGCGG+AGG | 0.514348 | 3.4:-69390687 | MS.gene008140:CDS |
| CCTCCGCCTCCACTGTTGGG+AGG | 0.519513 | 3.4:+69390687 | None:intergenic |
| TAGCTGAGGCAGCACCGGTA+AGG | 0.526708 | 3.4:+69388508 | None:intergenic |
| AAGAATGCTTCAAACAATCA+AGG | 0.526990 | 3.4:-69390923 | MS.gene008140:intron |
| AAAGCTAGCTGAGGCAGCAC+CGG | 0.543010 | 3.4:+69388503 | None:intergenic |
| ATGGCTTGTATTGCTGCTAC+TGG | 0.544057 | 3.4:+69391114 | None:intergenic |
| GCTTTGTTTCTCTGAACCTA+CGG | 0.544632 | 3.4:-69388485 | MS.gene008140:CDS |
| GGAGGCGGAGGCGGACAACA+GGG | 0.549463 | 3.4:-69390669 | MS.gene008140:CDS |
| TATAGGAAATGATCTTTCAG+TGG | 0.570515 | 3.4:-69388457 | MS.gene008140:CDS |
| AATGCATAACTCACAGATCA+GGG | 0.570733 | 3.4:+69389881 | None:intergenic |
| AAGACAAGATGAAAATGGTG+AGG | 0.598153 | 3.4:+69388749 | None:intergenic |
| CAGCCAGCTAATAACTGGCA+AGG | 0.605206 | 3.4:-69390024 | MS.gene008140:CDS |
| AGACAAGATGAAAATGGTGA+GGG | 0.610681 | 3.4:+69388750 | None:intergenic |
| AGCAATACAAGCCATTTACT+CGG | 0.612006 | 3.4:-69391106 | MS.gene008140:CDS |
| GCTATGTGAATACGGCTGCA+TGG | 0.612811 | 3.4:-69388879 | MS.gene008140:CDS |
| CTATGTGATAGTGGTCCCAT+TGG | 0.614198 | 3.4:-69388845 | MS.gene008140:CDS |
| ATACAGATAACAGAACATCA+TGG | 0.618085 | 3.4:-69388915 | MS.gene008140:CDS |
| ATAAGTTCCTTGAATCCAGT+CGG | 0.621033 | 3.4:-69389934 | MS.gene008140:CDS |
| CATTTGAACCCATATACTGA+AGG | 0.626704 | 3.4:+69388809 | None:intergenic |
| CAGAGAAACAAAGCTAGCTG+AGG | 0.631465 | 3.4:+69388494 | None:intergenic |
| TTCCAGTTGAGATTCTTCGG+TGG | 0.636030 | 3.4:-69388542 | MS.gene008140:CDS |
| GAACTGAACTTTGATGAAGA+CGG | 0.639176 | 3.4:+69388398 | None:intergenic |
| ACATTCCCTCCCAACAGTGG+AGG | 0.642219 | 3.4:-69390693 | MS.gene008140:CDS |
| CAAACATTCCCTCCCAACAG+TGG | 0.649727 | 3.4:-69390696 | MS.gene008140:CDS |
| CATTTCCTATAAAAGACCGT+AGG | 0.655329 | 3.4:+69388469 | None:intergenic |
| GTACACACAGTATTTCAACG+TGG | 0.852750 | 3.4:-69389983 | MS.gene008140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTTGTTTAATTTT+AGG | - | chr3.4:69389180-69389199 | MS.gene008140:intron | 10.0% |
| !! | AAAAATATTACTTCTCTAAT+TGG | - | chr3.4:69389874-69389893 | MS.gene008140:intron | 15.0% |
| !! | AAGTTCATAAATATTAGATT+AGG | + | chr3.4:69388779-69388798 | None:intergenic | 15.0% |
| !! | TATATACTATGAATCTATTA+TGG | - | chr3.4:69390280-69390299 | MS.gene008140:intron | 15.0% |
| !! | TTATTAGATAAAAACATGAA+AGG | + | chr3.4:69390925-69390944 | None:intergenic | 15.0% |
| !!! | ATCAGAAATTTATACATTTT+GGG | + | chr3.4:69390046-69390065 | None:intergenic | 15.0% |
| !!! | TATCAGAAATTTATACATTT+TGG | + | chr3.4:69390047-69390066 | None:intergenic | 15.0% |
| !!! | TTATTATGCTTTTTTATTAC+TGG | - | chr3.4:69389006-69389025 | MS.gene008140:intron | 15.0% |
| !! | AAACCCATTTATATACTTTA+TGG | - | chr3.4:69389039-69389058 | MS.gene008140:intron | 20.0% |
| !! | AAGCCATAAAGTATATAAAT+GGG | + | chr3.4:69389045-69389064 | None:intergenic | 20.0% |
| !! | ACACATAATATGTTTAGTTA+TGG | - | chr3.4:69389259-69389278 | MS.gene008140:intron | 20.0% |
| !! | ACCAGATATATTTATATAAC+AGG | + | chr3.4:69390308-69390327 | None:intergenic | 20.0% |
| !! | ACTATAAATATGCCAATTAA+TGG | - | chr3.4:69389978-69389997 | MS.gene008140:CDS | 20.0% |
| !! | ATGATTAATATAGCATAGAT+TGG | + | chr3.4:69389433-69389452 | None:intergenic | 20.0% |
| !! | CCAGATATATTTATATAACA+GGG | + | chr3.4:69390307-69390326 | None:intergenic | 20.0% |
| !! | CTATAAATATGCCAATTAAT+GGG | - | chr3.4:69389979-69389998 | MS.gene008140:CDS | 20.0% |
| !! | GACAAAATCAAATAAAATCT+CGG | + | chr3.4:69390374-69390393 | None:intergenic | 20.0% |
| !! | TTTAATTCTTTGCCATATAA+TGG | - | chr3.4:69390081-69390100 | MS.gene008140:intron | 20.0% |
| !!! | AGTAAATCGCTTTTAAATTA+TGG | - | chr3.4:69388692-69388711 | MS.gene008140:intron | 20.0% |
| !!! | TACATTTTCGATAACTAAAA+TGG | - | chr3.4:69389679-69389698 | MS.gene008140:intron | 20.0% |
| ! | AAAATCAAATAAAATCTCGG+AGG | + | chr3.4:69390371-69390390 | None:intergenic | 25.0% |
| ! | AAGTCTAAACCAATTGAATA+TGG | - | chr3.4:69389232-69389251 | MS.gene008140:intron | 25.0% |
| ! | AATGTTTGCATATTTGCATA+AGG | + | chr3.4:69388814-69388833 | None:intergenic | 25.0% |
| ! | ATACTTTATTACTACAGTCT+TGG | + | chr3.4:69390455-69390474 | None:intergenic | 25.0% |
| ! | ATAGTAATTTAACCCACAAA+TGG | + | chr3.4:69390263-69390282 | None:intergenic | 25.0% |
| ! | ATGTTTGCATATTTGCATAA+GGG | + | chr3.4:69388813-69388832 | None:intergenic | 25.0% |
| ! | ATTACAACTATTCTCTAATC+AGG | + | chr3.4:69389395-69389414 | None:intergenic | 25.0% |
| ! | CCCTGTTATATAAATATATC+TGG | - | chr3.4:69390304-69390323 | MS.gene008140:intron | 25.0% |
| ! | GAAGCCATAAAGTATATAAA+TGG | + | chr3.4:69389046-69389065 | None:intergenic | 25.0% |
| ! | TATTCAAATCTACATGCAAT+TGG | + | chr3.4:69388660-69388679 | None:intergenic | 25.0% |
| ! | TGATAGATGATTAATACTGA+TGG | - | chr3.4:69389357-69389376 | MS.gene008140:intron | 25.0% |
| !! | AAATTTATACATTTTGGGCT+AGG | + | chr3.4:69390041-69390060 | None:intergenic | 25.0% |
| !! | AGGAGAAAAACAAAACATTT+TGG | - | chr3.4:69389119-69389138 | MS.gene008140:intron | 25.0% |
| !! | ATTTTTCTTGCAAATAGCTT+TGG | - | chr3.4:69391101-69391120 | MS.gene008140:CDS | 25.0% |
| !! | TATCTGTATGTTTTTCCATA+AGG | + | chr3.4:69390596-69390615 | None:intergenic | 25.0% |
| !! | TGATACTTTTCCATTATTAC+AGG | - | chr3.4:69390502-69390521 | MS.gene008140:intron | 25.0% |
| !! | TTAATTGCTTTGTTCCAATA+TGG | + | chr3.4:69390162-69390181 | None:intergenic | 25.0% |
| !! | TTATCTGATTGTTCATCTTT+TGG | - | chr3.4:69388551-69388570 | MS.gene008140:CDS | 25.0% |
| !! | TTTAGCTACTGACAATTTTA+AGG | + | chr3.4:69390195-69390214 | None:intergenic | 25.0% |
| !! | TTTTCCATTATTACAGGTAT+GGG | - | chr3.4:69390508-69390527 | MS.gene008140:intron | 25.0% |
| !!! | AGAGAAGTAATATTTTTGCA+TGG | + | chr3.4:69389871-69389890 | None:intergenic | 25.0% |
| !!! | GAGAAGTAATATTTTTGCAT+GGG | + | chr3.4:69389870-69389889 | None:intergenic | 25.0% |
| !!! | TACTTTTTCCTTCAGTATAT+GGG | - | chr3.4:69390705-69390724 | MS.gene008140:CDS | 25.0% |
| !!! | TCAAACTTAATTTGTGACTA+TGG | - | chr3.4:69388915-69388934 | MS.gene008140:CDS | 25.0% |
| !!! | TCTCTATTTTTTCCATTTGT+GGG | - | chr3.4:69390248-69390267 | MS.gene008140:intron | 25.0% |
| !!! | TGTTGTTTTATGCAAACTTA+GGG | - | chr3.4:69389946-69389965 | MS.gene008140:CDS | 25.0% |
| !!! | TGTTTAGTTATGGCTTTATT+CGG | - | chr3.4:69389269-69389288 | MS.gene008140:intron | 25.0% |
| !!! | TTCTCTATTTTTTCCATTTG+TGG | - | chr3.4:69390247-69390266 | MS.gene008140:intron | 25.0% |
| !!! | TTGTTGTTTTATGCAAACTT+AGG | - | chr3.4:69389945-69389964 | MS.gene008140:CDS | 25.0% |
| AAAAAGACTCCGAACAAAAA+AGG | + | chr3.4:69389165-69389184 | None:intergenic | 30.0% | |
| AAACTGATCTTGATTTCATG+TGG | - | chr3.4:69389704-69389723 | MS.gene008140:intron | 30.0% | |
| AACAGAAGGCAATAAGAAAA+AGG | + | chr3.4:69389826-69389845 | None:intergenic | 30.0% | |
| AAGAATGCTTCAAACAATCA+AGG | - | chr3.4:69388599-69388618 | MS.gene008140:intron | 30.0% | |
| AATTCTTTGCCATATAATGG+AGG | - | chr3.4:69390084-69390103 | MS.gene008140:intron | 30.0% | |
| ACAGAAGGCAATAAGAAAAA+GGG | + | chr3.4:69389825-69389844 | None:intergenic | 30.0% | |
| ATACAGATAACAGAACATCA+TGG | - | chr3.4:69390607-69390626 | MS.gene008140:intron | 30.0% | |
| ATATATCTGCCTCCATTATA+TGG | + | chr3.4:69390096-69390115 | None:intergenic | 30.0% | |
| ATATATTGATCCAGCCATAT+TGG | - | chr3.4:69390145-69390164 | MS.gene008140:intron | 30.0% | |
| CAAGAAAAATGCAGCAATTA+TGG | + | chr3.4:69391091-69391110 | None:intergenic | 30.0% | |
| CTGTCACAATAACATTTATG+GGG | - | chr3.4:69389760-69389779 | MS.gene008140:intron | 30.0% | |
| GCTGTCACAATAACATTTAT+GGG | - | chr3.4:69389759-69389778 | MS.gene008140:intron | 30.0% | |
| GTTCAAATGCTAACCTTATA+CGG | - | chr3.4:69390727-69390746 | MS.gene008140:intron | 30.0% | |
| TACAGAAGACAAGATGAAAA+TGG | + | chr3.4:69390781-69390800 | None:intergenic | 30.0% | |
| TATAGGAAATGATCTTTCAG+TGG | - | chr3.4:69391065-69391084 | MS.gene008140:intron | 30.0% | |
| TATATATGGCTATGTGATAG+TGG | - | chr3.4:69390668-69390687 | MS.gene008140:CDS | 30.0% | |
| TGATAACATTACTTACCAGT+TGG | + | chr3.4:69388898-69388917 | None:intergenic | 30.0% | |
| TGATGTTAGCTATGTGAATA+CGG | - | chr3.4:69390635-69390654 | MS.gene008140:intron | 30.0% | |
| TGATTGATATGAATACTCAC+TGG | + | chr3.4:69388449-69388468 | None:intergenic | 30.0% | |
| TGGATCATAATAATCCTTAC+CGG | - | chr3.4:69391000-69391019 | MS.gene008140:intron | 30.0% | |
| TGGCTGGATCAATATATTTA+TGG | + | chr3.4:69390142-69390161 | None:intergenic | 30.0% | |
| TGTGTAACACCATATTCAAT+TGG | + | chr3.4:69389244-69389263 | None:intergenic | 30.0% | |
| TTAATGGTTGAATGTGTTTC+TGG | - | chr3.4:69389292-69389311 | MS.gene008140:intron | 30.0% | |
| TTATTCCAGTTGAGATTCTT+CGG | - | chr3.4:69390977-69390996 | MS.gene008140:intron | 30.0% | |
| TTTGAGAAAATGAAAGTCAG+TGG | - | chr3.4:69389899-69389918 | MS.gene008140:CDS | 30.0% | |
| ! | AAATTTTGCAACGTACCTTA+TGG | - | chr3.4:69390578-69390597 | MS.gene008140:intron | 30.0% |
| ! | ACTTTATGGCTTCACATTTT+TGG | - | chr3.4:69389053-69389072 | MS.gene008140:intron | 30.0% |
| ! | ATGTTTTCAGTTGCATACTT+TGG | - | chr3.4:69389333-69389352 | MS.gene008140:intron | 30.0% |
| ! | CTTTATGGCTTCACATTTTT+GGG | - | chr3.4:69389054-69389073 | MS.gene008140:intron | 30.0% |
| ! | CTTTTCCATTATTACAGGTA+TGG | - | chr3.4:69390507-69390526 | MS.gene008140:intron | 30.0% |
| ! | TTGTTCATCTTTTGGTACTT+AGG | - | chr3.4:69388559-69388578 | MS.gene008140:intron | 30.0% |
| ! | TTTATGGCTTCACATTTTTG+GGG | - | chr3.4:69389055-69389074 | MS.gene008140:intron | 30.0% |
| ! | TTTTCTTATTGCCTTCTGTT+TGG | - | chr3.4:69389826-69389845 | MS.gene008140:intron | 30.0% |
| !! | ACATTTTGGTAGTTGATGTT+TGG | - | chr3.4:69389133-69389152 | MS.gene008140:intron | 30.0% |
| !! | CATTTTGGTAGTTGATGTTT+GGG | - | chr3.4:69389134-69389153 | MS.gene008140:intron | 30.0% |
| !! | TTATGGCTTTATTCGGTTAA+TGG | - | chr3.4:69389276-69389295 | MS.gene008140:intron | 30.0% |
| !!! | ATGTGTTTCTGGATTTTGAA+TGG | - | chr3.4:69389303-69389322 | MS.gene008140:intron | 30.0% |
| !!! | CTACTTTTTCCTTCAGTATA+TGG | - | chr3.4:69390704-69390723 | MS.gene008140:CDS | 30.0% |
| !!! | TGTGTTTCTGGATTTTGAAT+GGG | - | chr3.4:69389304-69389323 | MS.gene008140:intron | 30.0% |
| AAATGCATAACTCACAGATC+AGG | + | chr3.4:69389645-69389664 | None:intergenic | 35.0% | |
| AAGACAAGATGAAAATGGTG+AGG | + | chr3.4:69390776-69390795 | None:intergenic | 35.0% | |
| AATGCATAACTCACAGATCA+GGG | + | chr3.4:69389644-69389663 | None:intergenic | 35.0% | |
| AATGCGATATGCAAGAGAAT+CGG | - | chr3.4:69390328-69390347 | MS.gene008140:intron | 35.0% | |
| ACATCATGTCTCCCATTAAT+TGG | + | chr3.4:69389993-69390012 | None:intergenic | 35.0% | |
| AGAAGGCAATAAGAAAAAGG+GGG | + | chr3.4:69389823-69389842 | None:intergenic | 35.0% | |
| AGACAAGATGAAAATGGTGA+GGG | + | chr3.4:69390775-69390794 | None:intergenic | 35.0% | |
| AGCAATACAAGCCATTTACT+CGG | - | chr3.4:69388416-69388435 | MS.gene008140:CDS | 35.0% | |
| AGGAAAAAGTAGTATGCCAA+TGG | + | chr3.4:69390696-69390715 | None:intergenic | 35.0% | |
| ATAAGTTCCTTGAATCCAGT+CGG | - | chr3.4:69389588-69389607 | MS.gene008140:intron | 35.0% | |
| ATTAATCATTCACGTATCCG+TGG | - | chr3.4:69389444-69389463 | MS.gene008140:intron | 35.0% | |
| ATTACAGGTATGGGCTTATA+TGG | - | chr3.4:69390517-69390536 | MS.gene008140:intron | 35.0% | |
| CAGAAGGCAATAAGAAAAAG+GGG | + | chr3.4:69389824-69389843 | None:intergenic | 35.0% | |
| CATTTCCTATAAAAGACCGT+AGG | + | chr3.4:69391056-69391075 | None:intergenic | 35.0% | |
| CATTTGAACCCATATACTGA+AGG | + | chr3.4:69390716-69390735 | None:intergenic | 35.0% | |
| CGCTGTCACAATAACATTTA+TGG | - | chr3.4:69389758-69389777 | MS.gene008140:intron | 35.0% | |
| CGTTGCAAAATTTCCAAGTA+AGG | + | chr3.4:69390571-69390590 | None:intergenic | 35.0% | |
| CTTGATTTCATGTGGAAATG+TGG | - | chr3.4:69389712-69389731 | MS.gene008140:intron | 35.0% | |
| GAACTGAACTTTGATGAAGA+CGG | + | chr3.4:69391127-69391146 | None:intergenic | 35.0% | |
| GCTATCTCATTACTTAAGAC+TGG | + | chr3.4:69390401-69390420 | None:intergenic | 35.0% | |
| GGAAAAAGTAGTATGCCAAT+GGG | + | chr3.4:69390695-69390714 | None:intergenic | 35.0% | |
| TAAGCCCATACCTGTAATAA+TGG | + | chr3.4:69390515-69390534 | None:intergenic | 35.0% | |
| TTGGCATATTTATAGTCCCT+AGG | + | chr3.4:69389974-69389993 | None:intergenic | 35.0% | |
| ! | ATGCTAACCTTATACGGTTT+TGG | - | chr3.4:69390733-69390752 | MS.gene008140:intron | 35.0% |
| ! | GTTTTTGTACTTGCCTTACT+TGG | - | chr3.4:69390555-69390574 | MS.gene008140:intron | 35.0% |
| !! | ATATCGTATGCCCATTTTTG+GGG | - | chr3.4:69389078-69389097 | MS.gene008140:intron | 35.0% |
| !! | GATATCGTATGCCCATTTTT+GGG | - | chr3.4:69389077-69389096 | MS.gene008140:intron | 35.0% |
| AACATGCCATACACAGAAAG+CGG | + | chr3.4:69390809-69390828 | None:intergenic | 40.0% | |
| AAGAGAGTTACTGAAGAGCT+AGG | - | chr3.4:69390213-69390232 | MS.gene008140:intron | 40.0% | |
| AAGTTTCCGCTTTCTGTGTA+TGG | - | chr3.4:69390800-69390819 | MS.gene008140:intron | 40.0% | |
| AATCCTTGCCAGTTATTAGC+TGG | + | chr3.4:69389504-69389523 | None:intergenic | 40.0% | |
| ACAAGCACCAAAACCGTATA+AGG | + | chr3.4:69390743-69390762 | None:intergenic | 40.0% | |
| ATAACCCTCTCCCCAAAAAT+GGG | + | chr3.4:69389091-69389110 | None:intergenic | 40.0% | |
| CAACAGGGATATCAAACTCT+TGG | - | chr3.4:69388868-69388887 | MS.gene008140:CDS | 40.0% | |
| CATGGGTCAACAATGTACAA+TGG | + | chr3.4:69389853-69389872 | None:intergenic | 40.0% | |
| CCAATATGTGCTTGTGCAAA+AGG | + | chr3.4:69390873-69390892 | None:intergenic | 40.0% | |
| GTACACACAGTATTTCAACG+TGG | - | chr3.4:69389539-69389558 | MS.gene008140:intron | 40.0% | |
| TACAGTCTTGGACTCTATGT+AGG | + | chr3.4:69390443-69390462 | None:intergenic | 40.0% | |
| TGTACAATGGACCAAACAGA+AGG | + | chr3.4:69389840-69389859 | None:intergenic | 40.0% | |
| ! | CCTTTTGCACAAGCACATAT+TGG | - | chr3.4:69390870-69390889 | MS.gene008140:intron | 40.0% |
| ! | CTGAACCTACGGTCTTTTAT+AGG | - | chr3.4:69391048-69391067 | MS.gene008140:intron | 40.0% |
| ! | GGATATCGTATGCCCATTTT+TGG | - | chr3.4:69389076-69389095 | MS.gene008140:intron | 40.0% |
| ! | TCATCCATGCAGATGCTTTT+GGG | - | chr3.4:69389472-69389491 | MS.gene008140:intron | 40.0% |
| ! | TTCATCCATGCAGATGCTTT+TGG | - | chr3.4:69389471-69389490 | MS.gene008140:intron | 40.0% |
| ! | TTGCTTTGTTCCAATATGGC+TGG | + | chr3.4:69390158-69390177 | None:intergenic | 40.0% |
| !! | GCTTTGTTTCTCTGAACCTA+CGG | - | chr3.4:69391037-69391056 | MS.gene008140:intron | 40.0% |
| !!! | TATACGGTTTTGGTGCTTGT+GGG | - | chr3.4:69390743-69390762 | MS.gene008140:intron | 40.0% |
| !!! | TTATACGGTTTTGGTGCTTG+TGG | - | chr3.4:69390742-69390761 | MS.gene008140:intron | 40.0% |
| ACGGCTGCATGGTCTATATA+TGG | - | chr3.4:69390654-69390673 | MS.gene008140:CDS | 45.0% | |
| AGGCAATAAGAAAAAGGGGG+TGG | + | chr3.4:69389820-69389839 | None:intergenic | 45.0% | |
| ATCCACCGAAGAATCTCAAC+TGG | + | chr3.4:69390985-69391004 | None:intergenic | 45.0% | |
| CAAACTCTTGGAACTCCAAC+TGG | - | chr3.4:69388880-69388899 | MS.gene008140:CDS | 45.0% | |
| CAGAGAAACAAAGCTAGCTG+AGG | + | chr3.4:69391031-69391050 | None:intergenic | 45.0% | |
| CATAACCCTCTCCCCAAAAA+TGG | + | chr3.4:69389092-69389111 | None:intergenic | 45.0% | |
| CTGCATGGATGAATAAGCCA+CGG | + | chr3.4:69389464-69389483 | None:intergenic | 45.0% | |
| CTGGAACTGATCCGAGTAAA+TGG | + | chr3.4:69388430-69388449 | None:intergenic | 45.0% | |
| GCAAAAAAGTCATCACCGAC+TGG | + | chr3.4:69389606-69389625 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGAAGCAAA+AGG | + | chr3.4:69389801-69389820 | None:intergenic | 45.0% | |
| TAAGAAAAAGGGGGTGGAAG+TGG | + | chr3.4:69389814-69389833 | None:intergenic | 45.0% | |
| TCATGTGGAAATGTGGTGCT+TGG | - | chr3.4:69389719-69389738 | MS.gene008140:intron | 45.0% | |
| TTCCAGTTGAGATTCTTCGG+TGG | - | chr3.4:69390980-69390999 | MS.gene008140:intron | 45.0% | |
| ! | ATGCAAACTTAGGGTGCCTA+GGG | - | chr3.4:69389955-69389974 | MS.gene008140:CDS | 45.0% |
| ! | ATGGCTTGTATTGCTGCTAC+TGG | + | chr3.4:69388411-69388430 | None:intergenic | 45.0% |
| ! | TATGCAAACTTAGGGTGCCT+AGG | - | chr3.4:69389954-69389973 | MS.gene008140:CDS | 45.0% |
| !! | CTATGTGATAGTGGTCCCAT+TGG | - | chr3.4:69390677-69390696 | MS.gene008140:CDS | 45.0% |
| !! | TATGCCCATTTTTGGGGAGA+GGG | - | chr3.4:69389084-69389103 | MS.gene008140:intron | 45.0% |
| !!! | ATACGGTTTTGGTGCTTGTG+GGG | - | chr3.4:69390744-69390763 | MS.gene008140:intron | 45.0% |
| !!! | TGGGCAGAGCCTTTTTTGTT+CGG | - | chr3.4:69389153-69389172 | MS.gene008140:intron | 45.0% |
| CAAACATTCCCTCCCAACAG+TGG | - | chr3.4:69388826-69388845 | MS.gene008140:CDS | 50.0% | |
| CAGCCAGCTAATAACTGGCA+AGG | - | chr3.4:69389498-69389517 | MS.gene008140:intron | 50.0% | |
| GCTATGTGAATACGGCTGCA+TGG | - | chr3.4:69390643-69390662 | MS.gene008140:CDS | 50.0% | |
| GGAGAGGGTTATGACTTACG+AGG | - | chr3.4:69389099-69389118 | MS.gene008140:intron | 50.0% | |
| GGCAACAGCCAGCTAATAAC+TGG | - | chr3.4:69389493-69389512 | MS.gene008140:intron | 50.0% | |
| TGTGGAAATGTGGTGCTTGG+AGG | - | chr3.4:69389722-69389741 | MS.gene008140:intron | 50.0% | |
| ! | GTCATCACCGACTGGATTCA+AGG | + | chr3.4:69389598-69389617 | None:intergenic | 50.0% |
| !! | GTATGCCCATTTTTGGGGAG+AGG | - | chr3.4:69389083-69389102 | MS.gene008140:intron | 50.0% |
| !! | GTTGCCCAAAAGCATCTGCA+TGG | + | chr3.4:69389479-69389498 | None:intergenic | 50.0% |
| !!! | TACGGTTTTGGTGCTTGTGG+GGG | - | chr3.4:69390745-69390764 | MS.gene008140:intron | 50.0% |
| AAAGCTAGCTGAGGCAGCAC+CGG | + | chr3.4:69391022-69391041 | None:intergenic | 55.0% | |
| ACATTCCCTCCCAACAGTGG+AGG | - | chr3.4:69388829-69388848 | MS.gene008140:CDS | 55.0% | |
| TTCCCTCCCAACAGTGGAGG+CGG | - | chr3.4:69388832-69388851 | MS.gene008140:CDS | 60.0% | |
| !! | TAGCTGAGGCAGCACCGGTA+AGG | + | chr3.4:69391017-69391036 | None:intergenic | 60.0% |
| CTCCGCCTCCACTGTTGGGA+GGG | + | chr3.4:69388837-69388856 | None:intergenic | 65.0% | |
| AACAGTGGAGGCGGAGGCGG+AGG | - | chr3.4:69388841-69388860 | MS.gene008140:CDS | 70.0% | |
| CCCAACAGTGGAGGCGGAGG+CGG | - | chr3.4:69388838-69388857 | MS.gene008140:CDS | 70.0% | |
| CCGCCTCCGCCTCCACTGTT+GGG | + | chr3.4:69388841-69388860 | None:intergenic | 70.0% | |
| CCTCCCAACAGTGGAGGCGG+AGG | - | chr3.4:69388835-69388854 | MS.gene008140:CDS | 70.0% | |
| CCTCCGCCTCCACTGTTGGG+AGG | + | chr3.4:69388838-69388857 | None:intergenic | 70.0% | |
| GGAGGCGGAGGCGGACAACA+GGG | - | chr3.4:69388853-69388872 | MS.gene008140:CDS | 70.0% | |
| TCCGCCTCCGCCTCCACTGT+TGG | + | chr3.4:69388842-69388861 | None:intergenic | 70.0% | |
| AGTGGAGGCGGAGGCGGAGG+CGG | - | chr3.4:69388844-69388863 | MS.gene008140:CDS | 75.0% | |
| CGGAGGCGGAGGCGGACAAC+AGG | - | chr3.4:69388852-69388871 | MS.gene008140:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 69388389 | 69391155 | 69388389 | ID=MS.gene008140 |
| chr3.4 | mRNA | 69388389 | 69391155 | 69388389 | ID=MS.gene008140.t1;Parent=MS.gene008140 |
| chr3.4 | exon | 69391096 | 69391155 | 69391096 | ID=MS.gene008140.t1.exon1;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69391096 | 69391155 | 69391096 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| chr3.4 | exon | 69390924 | 69390963 | 69390924 | ID=MS.gene008140.t1.exon2;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69390924 | 69390963 | 69390924 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| chr3.4 | exon | 69390643 | 69390735 | 69390643 | ID=MS.gene008140.t1.exon3;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69390643 | 69390735 | 69390643 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| chr3.4 | exon | 69389895 | 69390060 | 69389895 | ID=MS.gene008140.t1.exon4;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69389895 | 69390060 | 69389895 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| chr3.4 | exon | 69388747 | 69389020 | 69388747 | ID=MS.gene008140.t1.exon5;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69388747 | 69389020 | 69388747 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| chr3.4 | exon | 69388389 | 69388577 | 69388389 | ID=MS.gene008140.t1.exon6;Parent=MS.gene008140.t1 |
| chr3.4 | CDS | 69388389 | 69388577 | 69388389 | ID=cds.MS.gene008140.t1;Parent=MS.gene008140.t1 |
| Gene Sequence |
| Protein sequence |
