Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072464.t1 | XP_003626299.1 | 99.2 | 261 | 2 | 0 | 6 | 266 | 22 | 282 | 2.10E-142 | 515 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072464.t1 | Q54TS4 | 35.8 | 193 | 122 | 2 | 68 | 259 | 126 | 317 | 4.5e-29 | 129.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072464.t1 | G7KYP9 | 99.2 | 261 | 2 | 0 | 6 | 266 | 22 | 282 | 1.5e-142 | 515.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050864 | MS.gene072464 | 0.948978 | 3.21E-107 | -1.69E-46 |
MS.gene052494 | MS.gene072464 | 0.806951 | 6.41E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene32501 | MS.gene072464 | PPI |
MS.gene072464 | MS.gene59238 | PPI |
MS.gene072464 | MS.gene63506 | PPI |
MS.gene62170 | MS.gene072464 | PPI |
MS.gene072464 | MS.gene50119 | PPI |
MS.gene072464 | MS.gene008140 | PPI |
MS.gene072464 | MS.gene29533 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072464.t1 | MTR_7g113620 | 99.234 | 261 | 2 | 0 | 6 | 266 | 22 | 282 | 0.0 | 527 |
MS.gene072464.t1 | MTR_5g081040 | 37.805 | 246 | 142 | 5 | 19 | 262 | 36 | 272 | 1.68e-52 | 172 |
MS.gene072464.t1 | MTR_3g069150 | 38.776 | 245 | 139 | 4 | 20 | 262 | 37 | 272 | 2.82e-49 | 164 |
MS.gene072464.t1 | MTR_5g081040 | 39.423 | 208 | 122 | 2 | 57 | 262 | 7 | 212 | 2.30e-48 | 159 |
MS.gene072464.t1 | MTR_3g069170 | 39.048 | 210 | 120 | 3 | 20 | 227 | 37 | 240 | 5.50e-43 | 147 |
MS.gene072464.t1 | MTR_3g069150 | 38.764 | 178 | 101 | 3 | 20 | 195 | 37 | 208 | 3.54e-33 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072464.t1 | AT5G27490 | 80.843 | 261 | 50 | 0 | 6 | 266 | 22 | 282 | 4.27e-162 | 451 |
MS.gene072464.t1 | AT3G05280 | 78.544 | 261 | 56 | 0 | 6 | 266 | 21 | 281 | 1.42e-147 | 414 |
MS.gene072464.t1 | AT2G39805 | 38.776 | 245 | 137 | 5 | 20 | 262 | 41 | 274 | 1.86e-54 | 177 |
MS.gene072464.t1 | AT2G39805 | 38.776 | 245 | 138 | 5 | 20 | 262 | 41 | 275 | 5.24e-53 | 173 |
Find 83 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCAACTATTCTGCCTATA+TGG | 0.275933 | 7.3:-3470592 | MS.gene072464:CDS |
AATATTTGTAGCAGCATCTA+TGG | 0.291783 | 7.3:-3470776 | MS.gene072464:CDS |
AAAACAAAATGGCATATAGA+TGG | 0.306893 | 7.3:-3473881 | None:intergenic |
TACTCAGGTATGGACCATTC+TGG | 0.345340 | 7.3:-3470813 | MS.gene072464:intron |
AAAAGGTCTACTTACAAATC+AGG | 0.347085 | 7.3:+3472224 | None:intergenic |
GGAAGATTACCGGTGGTTCT+AGG | 0.365279 | 7.3:-3473287 | MS.gene072464:CDS |
TGGGTGATTGCAGGTGTGGC+AGG | 0.371118 | 7.3:-3470416 | MS.gene072464:CDS |
AGGTGGTTCTTCATTGTTGC+TGG | 0.371924 | 7.3:-3470332 | MS.gene072464:CDS |
CATTTGTGGCACTTAACCTT+CGG | 0.374032 | 7.3:-3470379 | MS.gene072464:CDS |
CAATCCAGTTTCCTCTTAAA+CGG | 0.381688 | 7.3:+3470250 | None:intergenic |
CAAGCTCAGGGGAAGATTAC+CGG | 0.388535 | 7.3:-3473297 | MS.gene072464:CDS |
GAGCTGGAATAAAGACAAAC+AGG | 0.390832 | 7.3:+3470563 | None:intergenic |
TTCTTCTGATGAACCTCAGC+AGG | 0.399077 | 7.3:-3472381 | MS.gene072464:CDS |
GTTTGTCTTTATTCCAGCTC+TGG | 0.400569 | 7.3:-3470560 | MS.gene072464:intron |
CTCAGCAGGGTGGTTGGCTT+CGG | 0.402877 | 7.3:-3472367 | MS.gene072464:CDS |
TCATTAAAAGTTCCTCTGAA+TGG | 0.411432 | 7.3:+3472263 | None:intergenic |
ACAAGCTGAAGGATCAGAAA+TGG | 0.419782 | 7.3:-3470729 | MS.gene072464:CDS |
ACGGTGACCGGTGGTGGATC+TGG | 0.425336 | 7.3:+3473498 | None:intergenic |
ATATTCAGATGGGTGATTGC+AGG | 0.441456 | 7.3:-3470425 | MS.gene072464:CDS |
ATTTCCTCCATCGCAAGCTC+AGG | 0.446741 | 7.3:-3473310 | MS.gene072464:CDS |
GAAGTATCGACATCAAAGTA+TGG | 0.450124 | 7.3:+3472320 | None:intergenic |
ATTTGTGGCACTTAACCTTC+GGG | 0.459603 | 7.3:-3470378 | MS.gene072464:CDS |
AATCTGGTGACTTGGTCTGC+TGG | 0.463897 | 7.3:-3470694 | MS.gene072464:CDS |
GAGAAGCAACTTACCAGAGC+TGG | 0.464299 | 7.3:+3470547 | None:intergenic |
CAAACAGGGAATATCCATAT+AGG | 0.469322 | 7.3:+3470578 | None:intergenic |
TCTGTTGCAGTTGGCTTTAG+CGG | 0.472890 | 7.3:-3470303 | MS.gene072464:CDS |
ATTAAAGATCTACCTCTTCA+CGG | 0.481807 | 7.3:-3470276 | MS.gene072464:CDS |
ATGGGACTATGACATAAATC+TGG | 0.483862 | 7.3:-3470710 | MS.gene072464:CDS |
GTGTTTGTCCATTGTCCCAT+TGG | 0.488665 | 7.3:-3470450 | MS.gene072464:CDS |
ATGAACCTCAGCAGGGTGGT+TGG | 0.497811 | 7.3:-3472373 | MS.gene072464:CDS |
AACTTGACGGTGACCGGTGG+TGG | 0.508137 | 7.3:+3473492 | None:intergenic |
GTTCATGTCAGCAACATTTG+TGG | 0.509994 | 7.3:-3470393 | MS.gene072464:CDS |
CAAGCTGAAGGATCAGAAAT+GGG | 0.517844 | 7.3:-3470728 | MS.gene072464:CDS |
CCCATCTGAATATATCCAAT+GGG | 0.523908 | 7.3:+3470435 | None:intergenic |
TTCCCCTGAGCTTGCGATGG+AGG | 0.524017 | 7.3:+3473306 | None:intergenic |
ATCTTCCCCTGAGCTTGCGA+TGG | 0.526679 | 7.3:+3473303 | None:intergenic |
CCAGTGAACTTGACGGTGAC+CGG | 0.528555 | 7.3:+3473486 | None:intergenic |
CGGGCACATATCATGTCGGC+AGG | 0.530948 | 7.3:-3470359 | MS.gene072464:CDS |
CCCATTGGATATATTCAGAT+GGG | 0.538766 | 7.3:-3470435 | MS.gene072464:CDS |
AAACAAAATGGCATATAGAT+GGG | 0.541303 | 7.3:-3473880 | None:intergenic |
CCGGTCACCGTCAAGTTCAC+TGG | 0.541760 | 7.3:-3473486 | MS.gene072464:intron |
TCCCATTGGATATATTCAGA+TGG | 0.544799 | 7.3:-3470436 | MS.gene072464:CDS |
TCATCAGAAGAACCAGATGC+AGG | 0.552062 | 7.3:+3472392 | None:intergenic |
GTTCGTACCAGTGAACTTGA+CGG | 0.552167 | 7.3:+3473479 | None:intergenic |
GGGTGATTGCAGGTGTGGCA+GGG | 0.554516 | 7.3:-3470415 | MS.gene072464:CDS |
ATGACATAAATCTGGTGACT+TGG | 0.561043 | 7.3:-3470702 | MS.gene072464:CDS |
GTATAGACAAAGAGGAATGA+TGG | 0.561761 | 7.3:+3470651 | None:intergenic |
ACCCATCTGAATATATCCAA+TGG | 0.568674 | 7.3:+3470434 | None:intergenic |
ATATCATGTCGGCAGGTGAA+AGG | 0.568955 | 7.3:-3470352 | MS.gene072464:CDS |
ATACTTTGATGTCGATACTT+CGG | 0.569777 | 7.3:-3472318 | MS.gene072464:CDS |
GAATATATCCAATGGGACAA+TGG | 0.572781 | 7.3:+3470442 | None:intergenic |
GACCGGTGGTGGATCTGGAA+CGG | 0.576104 | 7.3:+3473503 | None:intergenic |
CCGGTACAGAGAAGTATTTG+AGG | 0.576562 | 7.3:+3470623 | None:intergenic |
AAAGGTCTACTTACAAATCA+GGG | 0.579016 | 7.3:+3472225 | None:intergenic |
CCTCAAATACTTCTCTGTAC+CGG | 0.581136 | 7.3:-3470623 | MS.gene072464:CDS |
TTTCCTCCATCGCAAGCTCA+GGG | 0.583701 | 7.3:-3473309 | MS.gene072464:CDS |
TCGAGGTGGCCTAGAACCAC+CGG | 0.584989 | 7.3:+3473278 | None:intergenic |
ATATTTGTAGCAGCATCTAT+GGG | 0.585347 | 7.3:-3470775 | MS.gene072464:CDS |
CAAATACTTCTCTGTACCGG+CGG | 0.587474 | 7.3:-3470620 | MS.gene072464:CDS |
GGCCGTTCCAGATCCACCAC+CGG | 0.597655 | 7.3:-3473505 | MS.gene072464:CDS |
CAGATGGGTGATTGCAGGTG+TGG | 0.599018 | 7.3:-3470420 | MS.gene072464:CDS |
AGGATTACGTATAGACAAAG+AGG | 0.600243 | 7.3:+3470643 | None:intergenic |
GTCTACTTACAAATCAGGGT+TGG | 0.601290 | 7.3:+3472229 | None:intergenic |
AGAGTGGTGCAAATCCAGAA+TGG | 0.616599 | 7.3:+3470799 | None:intergenic |
TCTTCTGATGAACCTCAGCA+GGG | 0.619382 | 7.3:-3472380 | MS.gene072464:CDS |
AAATACTTCTCTGTACCGGC+GGG | 0.619911 | 7.3:-3470619 | MS.gene072464:CDS |
ATATATAGCACACAAGCTGA+AGG | 0.625103 | 7.3:-3470740 | MS.gene072464:CDS |
AGGCCACCTCGAGATGCAGA+TGG | 0.625410 | 7.3:-3473267 | MS.gene072464:intron |
CGAAGCCAACCACCCTGCTG+AGG | 0.631145 | 7.3:+3472368 | None:intergenic |
TGCTGCTACAAATATTAGAG+TGG | 0.638926 | 7.3:+3470783 | None:intergenic |
TCTGATGAACCTCAGCAGGG+TGG | 0.640708 | 7.3:-3472377 | MS.gene072464:CDS |
CTTAAACGGATACCGTGAAG+AGG | 0.641911 | 7.3:+3470264 | None:intergenic |
TCATGTCGGCAGGTGAAAGG+TGG | 0.649545 | 7.3:-3470349 | MS.gene072464:CDS |
ATACTTCGGATGTTCTAGAG+AGG | 0.653109 | 7.3:-3472304 | MS.gene072464:CDS |
AAAATACCATCTGCATCTCG+AGG | 0.655529 | 7.3:+3473261 | None:intergenic |
CCGACATGATATGTGCCCGA+AGG | 0.658174 | 7.3:+3470363 | None:intergenic |
AATAGTTGAACAAGTCCCGC+CGG | 0.666349 | 7.3:+3470604 | None:intergenic |
CCTTCGGGCACATATCATGT+CGG | 0.666772 | 7.3:-3470363 | MS.gene072464:CDS |
TTCCTCCATCGCAAGCTCAG+GGG | 0.676586 | 7.3:-3473308 | MS.gene072464:CDS |
ATACCATCTGCATCTCGAGG+TGG | 0.680065 | 7.3:+3473264 | None:intergenic |
AGCTGGAATAAAGACAAACA+GGG | 0.694942 | 7.3:+3470564 | None:intergenic |
GCTCAGGGGAAGATTACCGG+TGG | 0.714030 | 7.3:-3473294 | MS.gene072464:CDS |
GTGAACTTGACGGTGACCGG+TGG | 0.721035 | 7.3:+3473489 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATATATTTAAAGAATTAT+TGG | + | chr7.3:3471968-3471987 | None:intergenic | 10.0% |
!! | ATAATAGAATTAGAGTATAA+CGG | + | chr7.3:3473009-3473028 | None:intergenic | 15.0% |
!! | ATTAAATATTGTAGCTAAAT+TGG | - | chr7.3:3472050-3472069 | MS.gene072464:intron | 15.0% |
!! | TATAAGTGCTTAATTAAATT+GGG | + | chr7.3:3471084-3471103 | None:intergenic | 15.0% |
!!! | TTTTTTATTATATTTGAGAC+CGG | + | chr7.3:3473099-3473118 | None:intergenic | 15.0% |
!! | AGTAGTACTATATAAAATAC+TGG | - | chr7.3:3473216-3473235 | MS.gene072464:intron | 20.0% |
!! | ATATCAGAAATAAGTATTAG+TGG | + | chr7.3:3472875-3472894 | None:intergenic | 20.0% |
!! | ATTGAAGAACTATAATACAT+TGG | - | chr7.3:3472120-3472139 | MS.gene072464:intron | 20.0% |
!! | CTATAAGTGCTTAATTAAAT+TGG | + | chr7.3:3471085-3471104 | None:intergenic | 20.0% |
!! | CTATATGAACTAACATAATT+TGG | - | chr7.3:3472689-3472708 | MS.gene072464:intron | 20.0% |
!! | TACAGATCAAATATCAAAAT+TGG | + | chr7.3:3470972-3470991 | None:intergenic | 20.0% |
!! | TATACTCTAATTCTATTATC+TGG | - | chr7.3:3473010-3473029 | MS.gene072464:intron | 20.0% |
!! | TATTATTGTGATTAAAAGAC+TGG | + | chr7.3:3470943-3470962 | None:intergenic | 20.0% |
!! | TCAATATTCAATTTCAACTA+TGG | - | chr7.3:3471999-3472018 | MS.gene072464:intron | 20.0% |
!!! | AATTAACCGATTCAATTAAA+CGG | - | chr7.3:3470715-3470734 | MS.gene072464:CDS | 20.0% |
!!! | ACTATCATCTACATTATTTT+AGG | + | chr7.3:3472097-3472116 | None:intergenic | 20.0% |
!!! | CTAATACTTATTTCTGATAT+AGG | - | chr7.3:3472875-3472894 | MS.gene072464:intron | 20.0% |
!!! | GATTTTAGTTTTACTGATAT+TGG | - | chr7.3:3471366-3471385 | MS.gene072464:intron | 20.0% |
!!! | TATTATGTTTTCCCTTTATT+TGG | - | chr7.3:3472168-3472187 | MS.gene072464:intron | 20.0% |
!!! | TATTTTATATAGTACTACTC+CGG | + | chr7.3:3473215-3473234 | None:intergenic | 20.0% |
!!! | TTTAGTCTCTTTTTTATTTG+TGG | - | chr7.3:3473041-3473060 | MS.gene072464:intron | 20.0% |
! | AAAGAAGAGAAAAGTTATAC+AGG | + | chr7.3:3470541-3470560 | None:intergenic | 25.0% |
! | AACATAATTTGGAGATTACA+AGG | - | chr7.3:3472700-3472719 | MS.gene072464:intron | 25.0% |
! | AATAAAATGAGCAACAGAAA+AGG | + | chr7.3:3471934-3471953 | None:intergenic | 25.0% |
! | AGAAAAGACTACAATTGTTA+AGG | + | chr7.3:3472945-3472964 | None:intergenic | 25.0% |
! | ATTCAATTTCAACTATGGTT+TGG | - | chr7.3:3472004-3472023 | MS.gene072464:intron | 25.0% |
! | CAGAAAGAAAAAGAAAAGAA+AGG | + | chr7.3:3470569-3470588 | None:intergenic | 25.0% |
! | CATGAAATTAATTACCTCAA+TGG | - | chr7.3:3471041-3471060 | MS.gene072464:intron | 25.0% |
! | CATTGAGGTAATTAATTTCA+TGG | + | chr7.3:3471043-3471062 | None:intergenic | 25.0% |
! | GAAATCAGAATGATAGAATT+TGG | + | chr7.3:3470593-3470612 | None:intergenic | 25.0% |
! | GCGAATATATAATAACCTAT+TGG | + | chr7.3:3472304-3472323 | None:intergenic | 25.0% |
! | TAGAAAACATAAGAACTAAC+AGG | + | chr7.3:3472341-3472360 | None:intergenic | 25.0% |
! | TCATATTTACTTGATATGCA+CGG | - | chr7.3:3471487-3471506 | MS.gene072464:intron | 25.0% |
!! | AAAAGCAACTTTTCCTTTTA+GGG | - | chr7.3:3472744-3472763 | MS.gene072464:intron | 25.0% |
!! | AAAATTTCTAGAAGCACAAA+AGG | + | chr7.3:3471627-3471646 | None:intergenic | 25.0% |
!! | ACTATAGAAGTATAGTCTAT+GGG | + | chr7.3:3472846-3472865 | None:intergenic | 25.0% |
!! | AGCTATAAACCATTTTCATA+AGG | - | chr7.3:3471180-3471199 | MS.gene072464:intron | 25.0% |
!! | TCAAACAAAGTTGAAGTATT+TGG | + | chr7.3:3473163-3473182 | None:intergenic | 25.0% |
!! | TCTTTTGATCATCATTGTAT+TGG | - | chr7.3:3472529-3472548 | MS.gene072464:intron | 25.0% |
!!! | TATAATACATTGGTGGTTTT+GGG | - | chr7.3:3472130-3472149 | MS.gene072464:intron | 25.0% |
!!! | TTGTGCTTCTAGAAATTTTA+TGG | - | chr7.3:3471628-3471647 | MS.gene072464:intron | 25.0% |
!!! | TTTTTGCTTATATTTGAGAC+CGG | - | chr7.3:3473193-3473212 | MS.gene072464:intron | 25.0% |
AAAAGGTCTACTTACAAATC+AGG | + | chr7.3:3471917-3471936 | None:intergenic | 30.0% | |
AAAGGTCTACTTACAAATCA+GGG | + | chr7.3:3471916-3471935 | None:intergenic | 30.0% | |
AACAAAAGGTTTCACATTTC+AGG | + | chr7.3:3473661-3473680 | None:intergenic | 30.0% | |
AAGAAAAAGAGATAGATCTG+TGG | - | chr7.3:3470430-3470449 | MS.gene072464:CDS | 30.0% | |
AATATTTGTAGCAGCATCTA+TGG | - | chr7.3:3473362-3473381 | MS.gene072464:intron | 30.0% | |
ACTCTAATTCTATTATCTGG+TGG | - | chr7.3:3473013-3473032 | MS.gene072464:intron | 30.0% | |
AGATGACATCAAACTTCAAA+GGG | - | chr7.3:3471338-3471357 | MS.gene072464:intron | 30.0% | |
AGTGATCCGTTTAATTGAAT+CGG | + | chr7.3:3470724-3470743 | None:intergenic | 30.0% | |
ATAAGCTAAAAAACAACTCG+TGG | - | chr7.3:3471225-3471244 | MS.gene072464:intron | 30.0% | |
ATACTTTGATGTCGATACTT+CGG | - | chr7.3:3471820-3471839 | MS.gene072464:intron | 30.0% | |
ATATTTGTAGCAGCATCTAT+GGG | - | chr7.3:3473363-3473382 | MS.gene072464:intron | 30.0% | |
ATTAAAGATCTACCTCTTCA+CGG | - | chr7.3:3473862-3473881 | MS.gene072464:intron | 30.0% | |
ATTTGTGGAAACATCATATG+TGG | - | chr7.3:3473056-3473075 | MS.gene072464:intron | 30.0% | |
CAATATCTTGTATTGCCAAT+AGG | - | chr7.3:3472286-3472305 | MS.gene072464:CDS | 30.0% | |
CATATTTACTTGATATGCAC+GGG | - | chr7.3:3471488-3471507 | MS.gene072464:intron | 30.0% | |
GAAGAACTATAATACATTGG+TGG | - | chr7.3:3472123-3472142 | MS.gene072464:intron | 30.0% | |
TAACAGAATGAGAATGCAAT+TGG | + | chr7.3:3470696-3470715 | None:intergenic | 30.0% | |
TAAGAACTAACAGGTTTACT+TGG | + | chr7.3:3472332-3472351 | None:intergenic | 30.0% | |
TCATTAAAAGTTCCTCTGAA+TGG | + | chr7.3:3471878-3471897 | None:intergenic | 30.0% | |
TCCAAGATACCTTATGAAAA+TGG | + | chr7.3:3471192-3471211 | None:intergenic | 30.0% | |
! | AATTGTAGTCTTTTCTTGCT+TGG | - | chr7.3:3472949-3472968 | MS.gene072464:intron | 30.0% |
! | CAAAAGCAACTTTTCCTTTT+AGG | - | chr7.3:3472743-3472762 | MS.gene072464:intron | 30.0% |
! | CAATGTGAAGAAGTATATCT+CGG | - | chr7.3:3472236-3472255 | MS.gene072464:intron | 30.0% |
! | CTTTGTTTATGCATATTAGC+CGG | - | chr7.3:3472398-3472417 | MS.gene072464:CDS | 30.0% |
! | GACTATAGAAGTATAGTCTA+TGG | + | chr7.3:3472847-3472866 | None:intergenic | 30.0% |
! | TATAGGAACTGATTCTAACA+TGG | + | chr7.3:3472644-3472663 | None:intergenic | 30.0% |
! | TCATGAACAGGATCTTTTTA+GGG | + | chr7.3:3472495-3472514 | None:intergenic | 30.0% |
! | TTATTATATTTGAGACCGGA+GGG | + | chr7.3:3473095-3473114 | None:intergenic | 30.0% |
! | TTCATGAACAGGATCTTTTT+AGG | + | chr7.3:3472496-3472515 | None:intergenic | 30.0% |
! | TTTATTATATTTGAGACCGG+AGG | + | chr7.3:3473096-3473115 | None:intergenic | 30.0% |
!! | ACCATTTTCATAAGGTATCT+TGG | - | chr7.3:3471188-3471207 | MS.gene072464:intron | 30.0% |
!! | CTAAAAGGAAAAGTTGCTTT+TGG | + | chr7.3:3472745-3472764 | None:intergenic | 30.0% |
!! | CTATAATACATTGGTGGTTT+TGG | - | chr7.3:3472129-3472148 | MS.gene072464:intron | 30.0% |
!! | TATGTTTTCCCTTTATTTGG+CGG | - | chr7.3:3472171-3472190 | MS.gene072464:intron | 30.0% |
!! | TCCCTCTAAAGTTAAAAAAC+TGG | + | chr7.3:3473263-3473282 | None:intergenic | 30.0% |
!!! | AATACTGGTTTTCTAAGAAG+AGG | - | chr7.3:3473231-3473250 | MS.gene072464:intron | 30.0% |
!!! | GCCAGTTTTTTAACTTTAGA+GGG | - | chr7.3:3473259-3473278 | MS.gene072464:intron | 30.0% |
!!! | TGCCAGTTTTTTAACTTTAG+AGG | - | chr7.3:3473258-3473277 | MS.gene072464:intron | 30.0% |
AAGATCCTGTTCATGAAACA+TGG | - | chr7.3:3472499-3472518 | MS.gene072464:intron | 35.0% | |
AAGTCCTTGTAAGACTGTTT+GGG | + | chr7.3:3471280-3471299 | None:intergenic | 35.0% | |
AAGTGAACTGAGTATAGTCA+GGG | - | chr7.3:3472423-3472442 | MS.gene072464:intron | 35.0% | |
ACCATAATTGTACTCAGGTA+TGG | - | chr7.3:3473315-3473334 | MS.gene072464:CDS | 35.0% | |
ACCCATCTGAATATATCCAA+TGG | + | chr7.3:3473707-3473726 | None:intergenic | 35.0% | |
AGATCCTGTTCATGAAACAT+GGG | - | chr7.3:3472500-3472519 | MS.gene072464:intron | 35.0% | |
AGCAACTATTAACACCATTG+AGG | + | chr7.3:3471058-3471077 | None:intergenic | 35.0% | |
AGCTGGAATAAAGACAAACA+GGG | + | chr7.3:3473577-3473596 | None:intergenic | 35.0% | |
AGGATTACGTATAGACAAAG+AGG | + | chr7.3:3473498-3473517 | None:intergenic | 35.0% | |
AGTATAACGGTTAGTAGTCA+TGG | + | chr7.3:3472996-3473015 | None:intergenic | 35.0% | |
ATATATAGCACACAAGCTGA+AGG | - | chr7.3:3473398-3473417 | MS.gene072464:intron | 35.0% | |
ATGACATAAATCTGGTGACT+TGG | - | chr7.3:3473436-3473455 | MS.gene072464:intron | 35.0% | |
ATGGGACTATGACATAAATC+TGG | - | chr7.3:3473428-3473447 | MS.gene072464:intron | 35.0% | |
CAAAACTGGTGCATATTACT+GGG | - | chr7.3:3472802-3472821 | MS.gene072464:intron | 35.0% | |
CAAACACTGCACAAAACAAA+AGG | + | chr7.3:3473675-3473694 | None:intergenic | 35.0% | |
CAAACAGGGAATATCCATAT+AGG | + | chr7.3:3473563-3473582 | None:intergenic | 35.0% | |
CACTTAATCTCGTTTCTTTC+AGG | - | chr7.3:3470612-3470631 | MS.gene072464:CDS | 35.0% | |
CCCATCTGAATATATCCAAT+GGG | + | chr7.3:3473706-3473725 | None:intergenic | 35.0% | |
CCCATTGGATATATTCAGAT+GGG | - | chr7.3:3473703-3473722 | MS.gene072464:intron | 35.0% | |
CCTAAATGCTTGAATGGTAA+CGG | - | chr7.3:3472907-3472926 | MS.gene072464:intron | 35.0% | |
CCTATATAGTCACTATTCCA+GGG | - | chr7.3:3472658-3472677 | MS.gene072464:intron | 35.0% | |
GAATATATCCAATGGGACAA+TGG | + | chr7.3:3473699-3473718 | None:intergenic | 35.0% | |
GAGATGACATCAAACTTCAA+AGG | - | chr7.3:3471337-3471356 | MS.gene072464:intron | 35.0% | |
GCATATTACTGGGACTAAAT+AGG | - | chr7.3:3472812-3472831 | MS.gene072464:intron | 35.0% | |
GCTAGTCGATAAATTCAAAC+AGG | - | chr7.3:3471302-3471321 | MS.gene072464:intron | 35.0% | |
GGAATTTAGAAAGATGTGAC+TGG | - | chr7.3:3471549-3471568 | MS.gene072464:intron | 35.0% | |
GTATAGACAAAGAGGAATGA+TGG | + | chr7.3:3473490-3473509 | None:intergenic | 35.0% | |
GTTCAACTATTCTGCCTATA+TGG | - | chr7.3:3473546-3473565 | MS.gene072464:intron | 35.0% | |
TAACATGGACAAGTGTTACA+AGG | + | chr7.3:3472629-3472648 | None:intergenic | 35.0% | |
TAAGTCCTTGTAAGACTGTT+TGG | + | chr7.3:3471281-3471300 | None:intergenic | 35.0% | |
TCCATACCTGAGTACAATTA+TGG | + | chr7.3:3473319-3473338 | None:intergenic | 35.0% | |
TCCCATTGGATATATTCAGA+TGG | - | chr7.3:3473702-3473721 | MS.gene072464:intron | 35.0% | |
TCCTATATAGTCACTATTCC+AGG | - | chr7.3:3472657-3472676 | MS.gene072464:intron | 35.0% | |
TCTGCATAAAATGAGTCACA+TGG | + | chr7.3:3471713-3471732 | None:intergenic | 35.0% | |
TGCTGCTACAAATATTAGAG+TGG | + | chr7.3:3473358-3473377 | None:intergenic | 35.0% | |
TTCATATAGATGTTAGTCCC+TGG | + | chr7.3:3472678-3472697 | None:intergenic | 35.0% | |
! | AGATTCAGTTGTGTGTTACT+TGG | + | chr7.3:3471424-3471443 | None:intergenic | 35.0% |
! | ATTGATAGTCAACAGCTTCA+AGG | - | chr7.3:3470508-3470527 | MS.gene072464:intron | 35.0% |
! | TCATTTTCAAAACCTGCATC+TGG | - | chr7.3:3471734-3471753 | MS.gene072464:intron | 35.0% |
! | TGGTATTTTTCTGTTGCAGT+TGG | - | chr7.3:3473826-3473845 | MS.gene072464:intron | 35.0% |
!! | GAAGTATCGACATCAAAGTA+TGG | + | chr7.3:3471821-3471840 | None:intergenic | 35.0% |
!! | TTCCTTTTAGGGATTCAAAC+CGG | - | chr7.3:3472755-3472774 | MS.gene072464:intron | 35.0% |
!!! | GATTCACTTTTTCCATTCAG+AGG | - | chr7.3:3471863-3471882 | MS.gene072464:intron | 35.0% |
AAAATACCATCTGCATCTCG+AGG | + | chr7.3:3470880-3470899 | None:intergenic | 40.0% | |
AAACCGGGTAGAATGTTGTA+GGG | - | chr7.3:3472771-3472790 | MS.gene072464:intron | 40.0% | |
AACGGATCACTTTCCATTGT+CGG | - | chr7.3:3470733-3470752 | MS.gene072464:CDS | 40.0% | |
AACTCCCATGTTTCATGAAC+AGG | + | chr7.3:3472507-3472526 | None:intergenic | 40.0% | |
AAGGAACTGTAAGGGAAACA+TGG | - | chr7.3:3471575-3471594 | MS.gene072464:intron | 40.0% | |
AATCCCTACAACATTCTACC+CGG | + | chr7.3:3472777-3472796 | None:intergenic | 40.0% | |
AATGAAATTCGCGCTACTTG+CGG | + | chr7.3:3470762-3470781 | None:intergenic | 40.0% | |
ACAAGCTGAAGGATCAGAAA+TGG | - | chr7.3:3473409-3473428 | MS.gene072464:intron | 40.0% | |
ACCATTCAAGCATTTAGGAG+TGG | + | chr7.3:3472905-3472924 | None:intergenic | 40.0% | |
ACTGGAAGAAGGAACTGTAA+GGG | - | chr7.3:3471567-3471586 | MS.gene072464:intron | 40.0% | |
AGAAAGATGTGACTGGAAGA+AGG | - | chr7.3:3471556-3471575 | MS.gene072464:intron | 40.0% | |
AGCTCACCATAATTGTACTC+AGG | - | chr7.3:3473310-3473329 | MS.gene072464:CDS | 40.0% | |
AGGAACTGTAAGGGAAACAT+GGG | - | chr7.3:3471576-3471595 | MS.gene072464:intron | 40.0% | |
ATATTCAGATGGGTGATTGC+AGG | - | chr7.3:3473713-3473732 | MS.gene072464:intron | 40.0% | |
ATTTGTGGCACTTAACCTTC+GGG | - | chr7.3:3473760-3473779 | MS.gene072464:intron | 40.0% | |
CAAGCTGAAGGATCAGAAAT+GGG | - | chr7.3:3473410-3473429 | MS.gene072464:intron | 40.0% | |
CAAGGACTTGAACCAAAACA+AGG | - | chr7.3:3472718-3472737 | MS.gene072464:intron | 40.0% | |
CATCAAACTTCAAAGGGACT+TGG | - | chr7.3:3471344-3471363 | MS.gene072464:intron | 40.0% | |
CATTTGTGGCACTTAACCTT+CGG | - | chr7.3:3473759-3473778 | MS.gene072464:intron | 40.0% | |
CCAAAACTGGTGCATATTAC+TGG | - | chr7.3:3472801-3472820 | MS.gene072464:intron | 40.0% | |
CCCTGGAATAGTGACTATAT+AGG | + | chr7.3:3472661-3472680 | None:intergenic | 40.0% | |
CCGTTACCATTCAAGCATTT+AGG | + | chr7.3:3472910-3472929 | None:intergenic | 40.0% | |
CCTCAAATACTTCTCTGTAC+CGG | - | chr7.3:3473515-3473534 | MS.gene072464:intron | 40.0% | |
CTAAGTACGAACTGGATCAT+GGG | + | chr7.3:3470289-3470308 | None:intergenic | 40.0% | |
CTATACTCAGTTCACTTCTC+CGG | + | chr7.3:3472420-3472439 | None:intergenic | 40.0% | |
CTGATATTGGAGATACTCGA+CGG | - | chr7.3:3471379-3471398 | MS.gene072464:intron | 40.0% | |
GAAGAAGGAAAGATGATGCA+AGG | - | chr7.3:3470466-3470485 | MS.gene072464:intron | 40.0% | |
GAAGTGAACTGAGTATAGTC+AGG | - | chr7.3:3472422-3472441 | MS.gene072464:intron | 40.0% | |
GAGCTGGAATAAAGACAAAC+AGG | + | chr7.3:3473578-3473597 | None:intergenic | 40.0% | |
GGATCTGAAGAAGAAGAAGA+AGG | - | chr7.3:3470451-3470470 | MS.gene072464:CDS | 40.0% | |
GTAGCTAAATTGGTGAGTTG+TGG | - | chr7.3:3472060-3472079 | MS.gene072464:intron | 40.0% | |
GTAGGGATTAAAGCCAAAAC+TGG | - | chr7.3:3472788-3472807 | MS.gene072464:intron | 40.0% | |
GTCTACTTACAAATCAGGGT+TGG | + | chr7.3:3471912-3471931 | None:intergenic | 40.0% | |
GTTCATGTCAGCAACATTTG+TGG | - | chr7.3:3473745-3473764 | MS.gene072464:intron | 40.0% | |
GTTTGTCTTTATTCCAGCTC+TGG | - | chr7.3:3473578-3473597 | MS.gene072464:intron | 40.0% | |
TCCACTCCTAAATGCTTGAA+TGG | - | chr7.3:3472901-3472920 | MS.gene072464:intron | 40.0% | |
TGATATTGGAGATACTCGAC+GGG | - | chr7.3:3471380-3471399 | MS.gene072464:intron | 40.0% | |
TGATGTCATCTCCTCTACTA+TGG | + | chr7.3:3471329-3471348 | None:intergenic | 40.0% | |
TTCAAACAGGTCCATAGTAG+AGG | - | chr7.3:3471315-3471334 | MS.gene072464:intron | 40.0% | |
TTCATGGTGACTAGCAATGA+TGG | + | chr7.3:3471027-3471046 | None:intergenic | 40.0% | |
TTCTGTCTGTGAATGTCTGA+TGG | - | chr7.3:3471528-3471547 | MS.gene072464:intron | 40.0% | |
! | CCAGTAATATGCACCAGTTT+TGG | + | chr7.3:3472804-3472823 | None:intergenic | 40.0% |
!! | ATACTTCGGATGTTCTAGAG+AGG | - | chr7.3:3471834-3471853 | MS.gene072464:intron | 40.0% |
!! | TCCTTTTAGGGATTCAAACC+GGG | - | chr7.3:3472756-3472775 | MS.gene072464:intron | 40.0% |
!!! | CATTATTTTAGGACTGCCAG+TGG | + | chr7.3:3472086-3472105 | None:intergenic | 40.0% |
!!! | GTTGCTTTTGGTCCTTGTTT+TGG | + | chr7.3:3472733-3472752 | None:intergenic | 40.0% |
!!! | TGGTCTGCTGGTTTGTTTTA+TGG | - | chr7.3:3473456-3473475 | MS.gene072464:intron | 40.0% |
AATAGTTGAACAAGTCCCGC+CGG | + | chr7.3:3473537-3473556 | None:intergenic | 45.0% | |
AGAGTGGTGCAAATCCAGAA+TGG | + | chr7.3:3473342-3473361 | None:intergenic | 45.0% | |
AGGTGGTTCTTCATTGTTGC+TGG | - | chr7.3:3473806-3473825 | MS.gene072464:intron | 45.0% | |
ATATCATGTCGGCAGGTGAA+AGG | - | chr7.3:3473786-3473805 | MS.gene072464:intron | 45.0% | |
CAAACCGGGTAGAATGTTGT+AGG | - | chr7.3:3472770-3472789 | MS.gene072464:intron | 45.0% | |
CAAATACTTCTCTGTACCGG+CGG | - | chr7.3:3473518-3473537 | MS.gene072464:intron | 45.0% | |
CGAAAACTGAGTGCTAGTAG+CGG | - | chr7.3:3470312-3470331 | MS.gene072464:CDS | 45.0% | |
CTCTCCCAAACAGTCTTACA+AGG | - | chr7.3:3471273-3471292 | MS.gene072464:intron | 45.0% | |
GAAGGAAAGATGATGCAAGG+AGG | - | chr7.3:3470469-3470488 | MS.gene072464:intron | 45.0% | |
GACCGGAGGGAGTAAAAATT+AGG | + | chr7.3:3473082-3473101 | None:intergenic | 45.0% | |
GACTGGAAGAAGGAACTGTA+AGG | - | chr7.3:3471566-3471585 | MS.gene072464:intron | 45.0% | |
GCTAAGTACGAACTGGATCA+TGG | + | chr7.3:3470290-3470309 | None:intergenic | 45.0% | |
GTGTTTGTCCATTGTCCCAT+TGG | - | chr7.3:3473688-3473707 | MS.gene072464:intron | 45.0% | |
GTTCGTACCAGTGAACTTGA+CGG | + | chr7.3:3470662-3470681 | None:intergenic | 45.0% | |
TACTCAGGTATGGACCATTC+TGG | - | chr7.3:3473325-3473344 | MS.gene072464:CDS | 45.0% | |
TCATCAGAAGAACCAGATGC+AGG | + | chr7.3:3471749-3471768 | None:intergenic | 45.0% | |
TCTTCTGATGAACCTCAGCA+GGG | - | chr7.3:3471758-3471777 | MS.gene072464:intron | 45.0% | |
TTCTTCTGATGAACCTCAGC+AGG | - | chr7.3:3471757-3471776 | MS.gene072464:intron | 45.0% | |
TTTCGTCGCTAAGTACGAAC+TGG | + | chr7.3:3470297-3470316 | None:intergenic | 45.0% | |
! | AAATACTTCTCTGTACCGGC+GGG | - | chr7.3:3473519-3473538 | MS.gene072464:intron | 45.0% |
! | ACCCGGTTTGAATCCCTAAA+AGG | + | chr7.3:3472760-3472779 | None:intergenic | 45.0% |
! | GGCCTAATTTTTACTCCCTC+CGG | - | chr7.3:3473077-3473096 | MS.gene072464:intron | 45.0% |
!! | CCGGTACAGAGAAGTATTTG+AGG | + | chr7.3:3473518-3473537 | None:intergenic | 45.0% |
!! | TCTGTTGCAGTTGGCTTTAG+CGG | - | chr7.3:3473835-3473854 | MS.gene072464:intron | 45.0% |
AATTGGTGAGTTGTGGCCAC+TGG | - | chr7.3:3472067-3472086 | MS.gene072464:intron | 50.0% | |
ATACCATCTGCATCTCGAGG+TGG | + | chr7.3:3470877-3470896 | None:intergenic | 50.0% | |
ATTTCCTCCATCGCAAGCTC+AGG | - | chr7.3:3470828-3470847 | MS.gene072464:intron | 50.0% | |
CAAGCTCAGGGGAAGATTAC+CGG | - | chr7.3:3470841-3470860 | MS.gene072464:intron | 50.0% | |
CCAGCTCACCGCCAAATAAA+GGG | + | chr7.3:3472182-3472201 | None:intergenic | 50.0% | |
CCTTCGGGCACATATCATGT+CGG | - | chr7.3:3473775-3473794 | MS.gene072464:intron | 50.0% | |
CTACTTGCGGAATCCGACAA+TGG | + | chr7.3:3470749-3470768 | None:intergenic | 50.0% | |
GAGAAGCAACTTACCAGAGC+TGG | + | chr7.3:3473594-3473613 | None:intergenic | 50.0% | |
GGAAAGATGATGCAAGGAGG+AGG | - | chr7.3:3470472-3470491 | MS.gene072464:intron | 50.0% | |
GGAAGATTACCGGTGGTTCT+AGG | - | chr7.3:3470851-3470870 | MS.gene072464:intron | 50.0% | |
TTTCCTCCATCGCAAGCTCA+GGG | - | chr7.3:3470829-3470848 | MS.gene072464:intron | 50.0% | |
! | CCTTTATTTGGCGGTGAGCT+GGG | - | chr7.3:3472180-3472199 | MS.gene072464:intron | 50.0% |
! | CTTTATTTGGCGGTGAGCTG+GGG | - | chr7.3:3472181-3472200 | MS.gene072464:intron | 50.0% |
! | GTCTTTTCTTGCTTGGCTGC+TGG | - | chr7.3:3472956-3472975 | MS.gene072464:intron | 50.0% |
!! | AATCTGGTGACTTGGTCTGC+TGG | - | chr7.3:3473444-3473463 | MS.gene072464:intron | 50.0% |
ATCTTCCCCTGAGCTTGCGA+TGG | + | chr7.3:3470838-3470857 | None:intergenic | 55.0% | |
ATGAACCTCAGCAGGGTGGT+TGG | - | chr7.3:3471765-3471784 | MS.gene072464:intron | 55.0% | |
CAGATGGGTGATTGCAGGTG+TGG | - | chr7.3:3473718-3473737 | MS.gene072464:intron | 55.0% | |
CCAGTGAACTTGACGGTGAC+CGG | + | chr7.3:3470655-3470674 | None:intergenic | 55.0% | |
CCCAGCTCACCGCCAAATAA+AGG | + | chr7.3:3472183-3472202 | None:intergenic | 55.0% | |
CCGACATGATATGTGCCCGA+AGG | + | chr7.3:3473778-3473797 | None:intergenic | 55.0% | |
TCATGTCGGCAGGTGAAAGG+TGG | - | chr7.3:3473789-3473808 | MS.gene072464:intron | 55.0% | |
TCTGATGAACCTCAGCAGGG+TGG | - | chr7.3:3471761-3471780 | MS.gene072464:intron | 55.0% | |
TTCCTCCATCGCAAGCTCAG+GGG | - | chr7.3:3470830-3470849 | MS.gene072464:intron | 55.0% | |
! | CCCTTTATTTGGCGGTGAGC+TGG | - | chr7.3:3472179-3472198 | MS.gene072464:intron | 55.0% |
AACTTGACGGTGACCGGTGG+TGG | + | chr7.3:3470649-3470668 | None:intergenic | 60.0% | |
AGGCCACCTCGAGATGCAGA+TGG | - | chr7.3:3470871-3470890 | MS.gene072464:intron | 60.0% | |
CCGGTCACCGTCAAGTTCAC+TGG | - | chr7.3:3470652-3470671 | MS.gene072464:CDS | 60.0% | |
CGGGCACATATCATGTCGGC+AGG | - | chr7.3:3473779-3473798 | MS.gene072464:intron | 60.0% | |
GCTCAGGGGAAGATTACCGG+TGG | - | chr7.3:3470844-3470863 | MS.gene072464:intron | 60.0% | |
GGGTGATTGCAGGTGTGGCA+GGG | - | chr7.3:3473723-3473742 | MS.gene072464:intron | 60.0% | |
GTGAACTTGACGGTGACCGG+TGG | + | chr7.3:3470652-3470671 | None:intergenic | 60.0% | |
TCGAGGTGGCCTAGAACCAC+CGG | + | chr7.3:3470863-3470882 | None:intergenic | 60.0% | |
TGGGTGATTGCAGGTGTGGC+AGG | - | chr7.3:3473722-3473741 | MS.gene072464:intron | 60.0% | |
TTCCCCTGAGCTTGCGATGG+AGG | + | chr7.3:3470835-3470854 | None:intergenic | 60.0% | |
!! | CTCAGCAGGGTGGTTGGCTT+CGG | - | chr7.3:3471771-3471790 | MS.gene072464:intron | 60.0% |
!! | GACCGGTGGTGGATCTGGAA+CGG | + | chr7.3:3470638-3470657 | None:intergenic | 60.0% |
CGAAGCCAACCACCCTGCTG+AGG | + | chr7.3:3471773-3471792 | None:intergenic | 65.0% | |
GGCCGTTCCAGATCCACCAC+CGG | - | chr7.3:3470633-3470652 | MS.gene072464:CDS | 65.0% | |
!! | ACGGTGACCGGTGGTGGATC+TGG | + | chr7.3:3470643-3470662 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 3470265 | 3473895 | 3470265 | ID=MS.gene072464 |
chr7.3 | mRNA | 3470265 | 3473895 | 3470265 | ID=MS.gene072464.t1;Parent=MS.gene072464 |
chr7.3 | exon | 3473881 | 3473895 | 3473881 | ID=MS.gene072464.t1.exon1;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3473881 | 3473895 | 3473881 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
chr7.3 | exon | 3473487 | 3473526 | 3473487 | ID=MS.gene072464.t1.exon2;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3473487 | 3473526 | 3473487 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
chr7.3 | exon | 3473268 | 3473348 | 3473268 | ID=MS.gene072464.t1.exon3;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3473268 | 3473348 | 3473268 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
chr7.3 | exon | 3472239 | 3472428 | 3472239 | ID=MS.gene072464.t1.exon4;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3472239 | 3472428 | 3472239 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
chr7.3 | exon | 3470561 | 3470828 | 3470561 | ID=MS.gene072464.t1.exon5;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3470561 | 3470828 | 3470561 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
chr7.3 | exon | 3470265 | 3470471 | 3470265 | ID=MS.gene072464.t1.exon6;Parent=MS.gene072464.t1 |
chr7.3 | CDS | 3470265 | 3470471 | 3470265 | ID=cds.MS.gene072464.t1;Parent=MS.gene072464.t1 |
Gene Sequence |
Protein sequence |