Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008202.t1 | XP_013460652.1 | 95.8 | 215 | 8 | 1 | 1 | 214 | 1 | 215 | 1.10E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008202.t1 | Q6NLC8 | 48.1 | 214 | 95 | 5 | 1 | 203 | 1 | 209 | 5.8e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008202.t1 | A0A072UZ14 | 95.8 | 215 | 8 | 1 | 1 | 214 | 1 | 215 | 8.2e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62991 | MS.gene008202 | PPI |
| MS.gene83133 | MS.gene008202 | PPI |
| MS.gene006970 | MS.gene008202 | PPI |
| MS.gene59144 | MS.gene008202 | PPI |
| MS.gene026608 | MS.gene008202 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008202.t1 | MTR_3g067730 | 94.931 | 217 | 10 | 1 | 1 | 216 | 1 | 217 | 1.10e-145 | 404 |
| MS.gene008202.t1 | MTR_5g079610 | 63.964 | 222 | 60 | 7 | 1 | 215 | 1 | 209 | 2.05e-82 | 244 |
| MS.gene008202.t1 | MTR_1g030740 | 47.111 | 225 | 96 | 6 | 1 | 216 | 1 | 211 | 1.21e-54 | 174 |
| MS.gene008202.t1 | MTR_4g085100 | 45.662 | 219 | 107 | 5 | 1 | 216 | 1 | 210 | 9.70e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008202.t1 | AT5G37840 | 48.815 | 211 | 92 | 8 | 1 | 203 | 1 | 203 | 5.52e-56 | 177 |
| MS.gene008202.t1 | AT1G66480 | 53.039 | 181 | 69 | 6 | 1 | 171 | 1 | 175 | 1.58e-54 | 174 |
| MS.gene008202.t1 | AT2G01340 | 51.705 | 176 | 70 | 7 | 1 | 174 | 1 | 163 | 9.89e-48 | 156 |
| MS.gene008202.t1 | AT1G71015 | 48.538 | 171 | 78 | 5 | 1 | 171 | 1 | 161 | 1.88e-40 | 137 |
| MS.gene008202.t1 | AT1G71015 | 48.538 | 171 | 78 | 5 | 1 | 171 | 1 | 161 | 1.88e-40 | 137 |
Find 63 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCTGGTCATGCTCTTT+TGG | 0.172137 | 3.1:-55976117 | MS.gene008202:CDS |
| GAAGATTGTAAGTTTGTATA+TGG | 0.218805 | 3.1:-55975733 | MS.gene008202:CDS |
| TCACAAGCAGTGAAGCATTT+TGG | 0.240768 | 3.1:-55976092 | MS.gene008202:CDS |
| GGCTAAGAAAATCTATTTCT+TGG | 0.251761 | 3.1:-55976030 | MS.gene008202:CDS |
| GGGCCCATCATCACCTAAAT+TGG | 0.255242 | 3.1:+55975857 | None:intergenic |
| TGAATTTCTCCTTCTTCCAC+TGG | 0.323110 | 3.1:+55974289 | None:intergenic |
| CCACTTGATCGCACCCTTCT+CGG | 0.326881 | 3.1:+55975975 | None:intergenic |
| AATGGTTGAGACTGAACTTT+TGG | 0.338433 | 3.1:+55975999 | None:intergenic |
| CTCCGTTTCGGATCTTCCTT+CGG | 0.362224 | 3.1:-55975889 | MS.gene008202:CDS |
| ACTACATCGTTTGCTTTAGC+TGG | 0.387675 | 3.1:+55976146 | None:intergenic |
| GCAAAGGTAATGAAAATAGA+TGG | 0.392442 | 3.1:-55976191 | MS.gene008202:CDS |
| AAGATTGTAAGTTTGTATAT+GGG | 0.412790 | 3.1:-55975732 | MS.gene008202:CDS |
| GGACCCATCACGAACTAAAC+CGG | 0.414228 | 3.1:+55975836 | None:intergenic |
| TCGGTGAAGCGGTCCAATTT+AGG | 0.419968 | 3.1:-55975870 | MS.gene008202:CDS |
| GCTATCGAAACGCTCCGTTT+CGG | 0.435029 | 3.1:-55975901 | MS.gene008202:CDS |
| CGGTCCAATTTAGGTGATGA+TGG | 0.440951 | 3.1:-55975861 | MS.gene008202:CDS |
| GGCTCAGTTGGATAGGTTGA+TGG | 0.448296 | 3.1:-55975787 | MS.gene008202:CDS |
| TCGCGATGGAGCCGAGGTGG+CGG | 0.453581 | 3.1:-55975757 | MS.gene008202:CDS |
| GGGAATAATGCTTCCGTGAA+GGG | 0.459311 | 3.1:-55975711 | MS.gene008202:CDS |
| TAGTTCGTGATGGGTCCACT+AGG | 0.462635 | 3.1:-55975830 | MS.gene008202:CDS |
| AACCTATCCAACTGAGCCTT+AGG | 0.477024 | 3.1:+55975792 | None:intergenic |
| GATTCCACCACCACCCTTCA+CGG | 0.479023 | 3.1:+55975698 | None:intergenic |
| AGAGATGGGAAACGTTATGA+TGG | 0.479796 | 3.1:-55976228 | None:intergenic |
| GGCCCGGTTTAGTTCGTGAT+GGG | 0.493588 | 3.1:-55975839 | MS.gene008202:CDS |
| GAGGATTCCTAAGGCTCAGT+TGG | 0.502372 | 3.1:-55975799 | MS.gene008202:CDS |
| GAATTTCTCCTTCTTCCACT+GGG | 0.507687 | 3.1:+55974290 | None:intergenic |
| AGTTTCAGCCCAGTGGAAGA+AGG | 0.510825 | 3.1:-55974298 | MS.gene008202:CDS |
| AATTTAGGTGATGATGGGCC+CGG | 0.513893 | 3.1:-55975855 | MS.gene008202:CDS |
| GATCGCACCCTTCTCGGCAA+TGG | 0.516224 | 3.1:+55975981 | None:intergenic |
| GGGCCCGGTTTAGTTCGTGA+TGG | 0.520609 | 3.1:-55975840 | MS.gene008202:CDS |
| AGTCTCAACCATTGCCGAGA+AGG | 0.535358 | 3.1:-55975989 | MS.gene008202:CDS |
| GTCTCAACCATTGCCGAGAA+GGG | 0.535992 | 3.1:-55975988 | MS.gene008202:CDS |
| CGGATCTTCCTTCGGTGAAG+CGG | 0.542039 | 3.1:-55975881 | MS.gene008202:CDS |
| CCGAGAAGGGTGCGATCAAG+TGG | 0.545387 | 3.1:-55975975 | MS.gene008202:CDS |
| GGTGGTGGTGGAATCAATGA+AGG | 0.549542 | 3.1:-55975690 | MS.gene008202:CDS |
| AAATAGAGGTTCACAAGCAA+AGG | 0.549838 | 3.1:-55975665 | MS.gene008202:CDS |
| TTCCTAAGGCTCAGTTGGAT+AGG | 0.549884 | 3.1:-55975794 | MS.gene008202:CDS |
| AATAGATGGAGAAACCTTCA+AGG | 0.552725 | 3.1:-55976177 | MS.gene008202:CDS |
| GCTTCCGTGAAGGGTGGTGG+TGG | 0.555337 | 3.1:-55975702 | MS.gene008202:CDS |
| GGTGAAAATGAGGATTCCTA+AGG | 0.559792 | 3.1:-55975808 | MS.gene008202:CDS |
| GGTCCAATTTAGGTGATGAT+GGG | 0.569664 | 3.1:-55975860 | MS.gene008202:CDS |
| AATGCTTCCGTGAAGGGTGG+TGG | 0.570431 | 3.1:-55975705 | MS.gene008202:CDS |
| CACCGAAGGAAGATCCGAAA+CGG | 0.571959 | 3.1:+55975887 | None:intergenic |
| AGATTGTAAGTTTGTATATG+GGG | 0.573949 | 3.1:-55975731 | MS.gene008202:CDS |
| GGGGAATAATGCTTCCGTGA+AGG | 0.574182 | 3.1:-55975712 | MS.gene008202:CDS |
| GAGATGGGAAACGTTATGAT+GGG | 0.574353 | 3.1:-55976227 | MS.gene008202:CDS |
| GGAGAGTCGCGATGGAGCCG+AGG | 0.592155 | 3.1:-55975763 | MS.gene008202:CDS |
| AGTTCGTGATGGGTCCACTA+GGG | 0.594789 | 3.1:-55975829 | MS.gene008202:CDS |
| AGTTGTTGGTGAGGTTCAAG+TGG | 0.598319 | 3.1:+55976056 | None:intergenic |
| TGAACCTCACCAACAACTCA+AGG | 0.599884 | 3.1:-55976051 | MS.gene008202:CDS |
| TTAGCCTTGAGTTGTTGGTG+AGG | 0.603693 | 3.1:+55976047 | None:intergenic |
| GGTCCACTAGGGTGAAAATG+AGG | 0.603810 | 3.1:-55975818 | MS.gene008202:CDS |
| TTGATGGAGGAGAGTCGCGA+TGG | 0.607880 | 3.1:-55975771 | MS.gene008202:CDS |
| GACCCATCACGAACTAAACC+GGG | 0.611560 | 3.1:+55975837 | None:intergenic |
| AATAATGCTTCCGTGAAGGG+TGG | 0.619421 | 3.1:-55975708 | MS.gene008202:CDS |
| AAATTGGACCGCTTCACCGA+AGG | 0.623623 | 3.1:+55975873 | None:intergenic |
| TACAATCTTCTCCGCCACCT+CGG | 0.636314 | 3.1:+55975746 | None:intergenic |
| ACGTGTGAGTTTCAGCCCAG+TGG | 0.650139 | 3.1:-55974305 | MS.gene008202:CDS |
| GAGTCGCGATGGAGCCGAGG+TGG | 0.651574 | 3.1:-55975760 | MS.gene008202:CDS |
| TCACAAGCAAAGGTCACGAA+GGG | 0.654870 | 3.1:-55975655 | MS.gene008202:intron |
| GAATCCAAAAGAGCATGACC+AGG | 0.657634 | 3.1:+55976113 | None:intergenic |
| TTCACAAGCAAAGGTCACGA+AGG | 0.660941 | 3.1:-55975656 | MS.gene008202:CDS |
| TCAGTTGGATAGGTTGATGG+AGG | 0.664629 | 3.1:-55975784 | MS.gene008202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATAAATAAAAAA+AGG | - | chr3.1:55975479-55975498 | MS.gene008202:intron | 0.0% |
| !!! | TTTTATTTATATATAAAAAA+TGG | + | chr3.1:55975477-55975496 | None:intergenic | 0.0% |
| !! | AAAGTATATTAAAATATAAG+AGG | - | chr3.1:55975312-55975331 | MS.gene008202:intron | 10.0% |
| !! | ATTTATGTTCTTAATAATAT+AGG | - | chr3.1:55975540-55975559 | MS.gene008202:intron | 10.0% |
| !!! | CTTATATTTTAATATACTTT+CGG | + | chr3.1:55975312-55975331 | None:intergenic | 10.0% |
| !! | AATATAATTCGTTATTAACA+AGG | - | chr3.1:55975954-55975973 | MS.gene008202:CDS | 15.0% |
| !! | TTAAAAAAGAAAAGAAAAGA+AGG | + | chr3.1:55975260-55975279 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAACTGCAAAA+TGG | + | chr3.1:55975030-55975049 | None:intergenic | 15.0% |
| !! | AAAATGAACAAAATAACGTA+AGG | + | chr3.1:55974883-55974902 | None:intergenic | 20.0% |
| !! | AAGATTGTAAGTTTGTATAT+GGG | - | chr3.1:55974762-55974781 | MS.gene008202:intron | 20.0% |
| !! | TTACAAGAAAGTTATATCAT+AGG | - | chr3.1:55976047-55976066 | MS.gene008202:CDS | 20.0% |
| !!! | AATATCGATAACCAAAATTT+TGG | - | chr3.1:55975447-55975466 | MS.gene008202:intron | 20.0% |
| !!! | ATGTATCTTTTTTGTTTTTC+AGG | - | chr3.1:55975200-55975219 | MS.gene008202:intron | 20.0% |
| !!! | ATTGCAAATTTTTAACTACT+TGG | - | chr3.1:55975646-55975665 | MS.gene008202:intron | 20.0% |
| !!! | TGTATCTTTTTTGTTTTTCA+GGG | - | chr3.1:55975201-55975220 | MS.gene008202:intron | 20.0% |
| ! | AAATGAATGAGGTAAGAATA+CGG | + | chr3.1:55975746-55975765 | None:intergenic | 25.0% |
| ! | AATCAATGAAGGAAAAATAG+AGG | - | chr3.1:55974815-55974834 | MS.gene008202:intron | 25.0% |
| ! | AGATTGTAAGTTTGTATATG+GGG | - | chr3.1:55974763-55974782 | MS.gene008202:intron | 25.0% |
| ! | GAAGATTGTAAGTTTGTATA+TGG | - | chr3.1:55974761-55974780 | MS.gene008202:intron | 25.0% |
| ! | TCTTGTTAATCTATCTAACA+TGG | - | chr3.1:55975706-55975725 | MS.gene008202:CDS | 25.0% |
| ! | TTAAAATATAAGAGGACACA+CGG | - | chr3.1:55975320-55975339 | MS.gene008202:intron | 25.0% |
| !! | ATTCTTACCTCATTCATTTT+TGG | - | chr3.1:55975747-55975766 | MS.gene008202:CDS | 25.0% |
| !! | TTATGAAAGAAAGTGTAACT+GGG | - | chr3.1:55975511-55975530 | MS.gene008202:intron | 25.0% |
| !! | TTTTATGAGAATTTGCAAGT+GGG | - | chr3.1:55974978-55974997 | MS.gene008202:intron | 25.0% |
| !! | TTTTTATGAGAATTTGCAAG+TGG | - | chr3.1:55974977-55974996 | MS.gene008202:intron | 25.0% |
| !!! | AAAATGGTTTGCCAAAATTT+TGG | + | chr3.1:55975461-55975480 | None:intergenic | 25.0% |
| !!! | CTGTATTGTATATGTTTTGA+TGG | + | chr3.1:55975774-55975793 | None:intergenic | 25.0% |
| !!! | TACATATTCGAAAGTATTCT+AGG | + | chr3.1:55975185-55975204 | None:intergenic | 25.0% |
| !!! | TTTCATTACCTTTGCTTTTT+TGG | + | chr3.1:55974298-55974317 | None:intergenic | 25.0% |
| AAATGAGATGTACCATGTAT+TGG | - | chr3.1:55975080-55975099 | MS.gene008202:intron | 30.0% | |
| AATGAGATGTACCATGTATT+GGG | - | chr3.1:55975081-55975100 | MS.gene008202:intron | 30.0% | |
| GATGTAGTTAAAAACTATCC+TGG | - | chr3.1:55974363-55974382 | MS.gene008202:intron | 30.0% | |
| GCAAAGGTAATGAAAATAGA+TGG | - | chr3.1:55974303-55974322 | MS.gene008202:CDS | 30.0% | |
| TATTTCTCCAACTTTCTTCT+TGG | + | chr3.1:55975592-55975611 | None:intergenic | 30.0% | |
| TGTTTCAATTTCCATGCAAA+CGG | - | chr3.1:55976116-55976135 | MS.gene008202:CDS | 30.0% | |
| ! | CTTATGAAAGAAAGTGTAAC+TGG | - | chr3.1:55975510-55975529 | MS.gene008202:intron | 30.0% |
| ! | GGCTAAGAAAATCTATTTCT+TGG | - | chr3.1:55974464-55974483 | MS.gene008202:intron | 30.0% |
| ! | TACATGGTACATCTCATTTT+TGG | + | chr3.1:55975079-55975098 | None:intergenic | 30.0% |
| ! | TTTGAGATACTTCATTGAGT+TGG | - | chr3.1:55975158-55975177 | MS.gene008202:intron | 30.0% |
| !! | ACATGGTACATCTCATTTTT+GGG | + | chr3.1:55975078-55975097 | None:intergenic | 30.0% |
| AAATAGAGGTTCACAAGCAA+AGG | - | chr3.1:55974829-55974848 | MS.gene008202:intron | 35.0% | |
| AATAGATGGAGAAACCTTCA+AGG | - | chr3.1:55974317-55974336 | MS.gene008202:intron | 35.0% | |
| GTCATAAGCAACATACAAGA+AGG | + | chr3.1:55975683-55975702 | None:intergenic | 35.0% | |
| GTTTCAATTTCCATGCAAAC+GGG | - | chr3.1:55976117-55976136 | MS.gene008202:CDS | 35.0% | |
| TATCATTCAGCATCATCTTG+TGG | + | chr3.1:55975371-55975390 | None:intergenic | 35.0% | |
| TGATGGTCCAAAAATGAATG+AGG | + | chr3.1:55975757-55975776 | None:intergenic | 35.0% | |
| ! | AATGGTTGAGACTGAACTTT+TGG | + | chr3.1:55974498-55974517 | None:intergenic | 35.0% |
| !! | CTTCTAAAACACCCAATACA+TGG | + | chr3.1:55975095-55975114 | None:intergenic | 35.0% |
| !!! | AGTGAAGCATTTTGGTCTTA+GGG | - | chr3.1:55974410-55974429 | MS.gene008202:intron | 35.0% |
| !!! | TTTTCTTAGCCTTGAGTTGT+TGG | + | chr3.1:55974455-55974474 | None:intergenic | 35.0% |
| ACTACATCGTTTGCTTTAGC+TGG | + | chr3.1:55974351-55974370 | None:intergenic | 40.0% | |
| GAAACGTTGTATGCTTTGTC+TGG | - | chr3.1:55974932-55974951 | MS.gene008202:intron | 40.0% | |
| GAATTTCTCCTTCTTCCACT+GGG | + | chr3.1:55976207-55976226 | None:intergenic | 40.0% | |
| GGGAAGAACCAAAAAAGCAA+AGG | - | chr3.1:55974287-55974306 | MS.gene008202:CDS | 40.0% | |
| GGTCCAATTTAGGTGATGAT+GGG | - | chr3.1:55974634-55974653 | MS.gene008202:intron | 40.0% | |
| GGTGAAAATGAGGATTCCTA+AGG | - | chr3.1:55974686-55974705 | MS.gene008202:intron | 40.0% | |
| TGAATTTCTCCTTCTTCCAC+TGG | + | chr3.1:55976208-55976227 | None:intergenic | 40.0% | |
| TTCACATTAACCCGTTTGCA+TGG | + | chr3.1:55976130-55976149 | None:intergenic | 40.0% | |
| TTCTTGGCATCAGCAAGATA+AGG | + | chr3.1:55975576-55975595 | None:intergenic | 40.0% | |
| ! | AATCCTCATTTTCACCCTAG+TGG | + | chr3.1:55974682-55974701 | None:intergenic | 40.0% |
| ! | AGCTGGAGTTTTTACCTTGA+AGG | + | chr3.1:55974334-55974353 | None:intergenic | 40.0% |
| ! | GTAGCACTCATTTTACGTGA+AGG | + | chr3.1:55974552-55974571 | None:intergenic | 40.0% |
| !! | CAGTGAAGCATTTTGGTCTT+AGG | - | chr3.1:55974409-55974428 | MS.gene008202:intron | 40.0% |
| !! | TCACAAGCAGTGAAGCATTT+TGG | - | chr3.1:55974402-55974421 | MS.gene008202:intron | 40.0% |
| AACCTATCCAACTGAGCCTT+AGG | + | chr3.1:55974705-55974724 | None:intergenic | 45.0% | |
| AATAATGCTTCCGTGAAGGG+TGG | - | chr3.1:55974786-55974805 | MS.gene008202:intron | 45.0% | |
| CGGTCCAATTTAGGTGATGA+TGG | - | chr3.1:55974633-55974652 | MS.gene008202:intron | 45.0% | |
| CTGGATGTTGCATGTGATGT+GGG | - | chr3.1:55974951-55974970 | MS.gene008202:intron | 45.0% | |
| GCTGATGCCAAGAAGAAAGT+TGG | - | chr3.1:55975582-55975601 | MS.gene008202:intron | 45.0% | |
| GGGAATAATGCTTCCGTGAA+GGG | - | chr3.1:55974783-55974802 | MS.gene008202:intron | 45.0% | |
| TCACAAGCAAAGGTCACGAA+GGG | - | chr3.1:55974839-55974858 | MS.gene008202:intron | 45.0% | |
| TCTGGATGTTGCATGTGATG+TGG | - | chr3.1:55974950-55974969 | MS.gene008202:intron | 45.0% | |
| TGAACCTCACCAACAACTCA+AGG | - | chr3.1:55974443-55974462 | MS.gene008202:intron | 45.0% | |
| TTCACAAGCAAAGGTCACGA+AGG | - | chr3.1:55974838-55974857 | MS.gene008202:intron | 45.0% | |
| TTCCTAAGGCTCAGTTGGAT+AGG | - | chr3.1:55974700-55974719 | MS.gene008202:intron | 45.0% | |
| ! | AGTTGTTGGTGAGGTTCAAG+TGG | + | chr3.1:55974441-55974460 | None:intergenic | 45.0% |
| ! | CTATCCTGGTCATGCTCTTT+TGG | - | chr3.1:55974377-55974396 | MS.gene008202:intron | 45.0% |
| ! | GAATCCAAAAGAGCATGACC+AGG | + | chr3.1:55974384-55974403 | None:intergenic | 45.0% |
| !! | AATTTAGGTGATGATGGGCC+CGG | - | chr3.1:55974639-55974658 | MS.gene008202:intron | 45.0% |
| !! | TCAGTTGGATAGGTTGATGG+AGG | - | chr3.1:55974710-55974729 | MS.gene008202:intron | 45.0% |
| !! | TTAGCCTTGAGTTGTTGGTG+AGG | + | chr3.1:55974450-55974469 | None:intergenic | 45.0% |
| AAATTGGACCGCTTCACCGA+AGG | + | chr3.1:55974624-55974643 | None:intergenic | 50.0% | |
| AGTCTCAACCATTGCCGAGA+AGG | - | chr3.1:55974505-55974524 | MS.gene008202:intron | 50.0% | |
| AGTTTCAGCCCAGTGGAAGA+AGG | - | chr3.1:55976196-55976215 | MS.gene008202:CDS | 50.0% | |
| CACCGAAGGAAGATCCGAAA+CGG | + | chr3.1:55974610-55974629 | None:intergenic | 50.0% | |
| CTCCGTTTCGGATCTTCCTT+CGG | - | chr3.1:55974605-55974624 | MS.gene008202:intron | 50.0% | |
| GACCCATCACGAACTAAACC+GGG | + | chr3.1:55974660-55974679 | None:intergenic | 50.0% | |
| GAGGATTCCTAAGGCTCAGT+TGG | - | chr3.1:55974695-55974714 | MS.gene008202:intron | 50.0% | |
| GCTATCGAAACGCTCCGTTT+CGG | - | chr3.1:55974593-55974612 | MS.gene008202:intron | 50.0% | |
| GGACCCATCACGAACTAAAC+CGG | + | chr3.1:55974661-55974680 | None:intergenic | 50.0% | |
| GGCTGAAACTCACACGTTTC+TGG | + | chr3.1:55976186-55976205 | None:intergenic | 50.0% | |
| GGGCCCATCATCACCTAAAT+TGG | + | chr3.1:55974640-55974659 | None:intergenic | 50.0% | |
| GGGGAATAATGCTTCCGTGA+AGG | - | chr3.1:55974782-55974801 | MS.gene008202:intron | 50.0% | |
| GGTCCACTAGGGTGAAAATG+AGG | - | chr3.1:55974676-55974695 | MS.gene008202:intron | 50.0% | |
| GTCTCAACCATTGCCGAGAA+GGG | - | chr3.1:55974506-55974525 | MS.gene008202:intron | 50.0% | |
| TACAATCTTCTCCGCCACCT+CGG | + | chr3.1:55974751-55974770 | None:intergenic | 50.0% | |
| TCGGTGAAGCGGTCCAATTT+AGG | - | chr3.1:55974624-55974643 | MS.gene008202:intron | 50.0% | |
| TGAGGTAAGAATACGGCGCT+AGG | + | chr3.1:55975739-55975758 | None:intergenic | 50.0% | |
| ! | GGCTCAGTTGGATAGGTTGA+TGG | - | chr3.1:55974707-55974726 | MS.gene008202:intron | 50.0% |
| !! | AGTTCGTGATGGGTCCACTA+GGG | - | chr3.1:55974665-55974684 | MS.gene008202:intron | 50.0% |
| !! | GGTGGTGGTGGAATCAATGA+AGG | - | chr3.1:55974804-55974823 | MS.gene008202:intron | 50.0% |
| !! | TAGTTCGTGATGGGTCCACT+AGG | - | chr3.1:55974664-55974683 | MS.gene008202:intron | 50.0% |
| AATGCTTCCGTGAAGGGTGG+TGG | - | chr3.1:55974789-55974808 | MS.gene008202:intron | 55.0% | |
| ACGTGTGAGTTTCAGCCCAG+TGG | - | chr3.1:55976189-55976208 | MS.gene008202:CDS | 55.0% | |
| CCACTTGATCGCACCCTTCT+CGG | + | chr3.1:55974522-55974541 | None:intergenic | 55.0% | |
| CGGATCTTCCTTCGGTGAAG+CGG | - | chr3.1:55974613-55974632 | MS.gene008202:intron | 55.0% | |
| GATTCCACCACCACCCTTCA+CGG | + | chr3.1:55974799-55974818 | None:intergenic | 55.0% | |
| TTGATGGAGGAGAGTCGCGA+TGG | - | chr3.1:55974723-55974742 | MS.gene008202:intron | 55.0% | |
| ! | GGCCCGGTTTAGTTCGTGAT+GGG | - | chr3.1:55974655-55974674 | MS.gene008202:intron | 55.0% |
| GATCGCACCCTTCTCGGCAA+TGG | + | chr3.1:55974516-55974535 | None:intergenic | 60.0% | |
| ! | CCGAGAAGGGTGCGATCAAG+TGG | - | chr3.1:55974519-55974538 | MS.gene008202:intron | 60.0% |
| ! | GGGCCCGGTTTAGTTCGTGA+TGG | - | chr3.1:55974654-55974673 | MS.gene008202:intron | 60.0% |
| ! | GCTTCCGTGAAGGGTGGTGG+TGG | - | chr3.1:55974792-55974811 | MS.gene008202:intron | 65.0% |
| GAGTCGCGATGGAGCCGAGG+TGG | - | chr3.1:55974734-55974753 | MS.gene008202:intron | 70.0% | |
| GGAGAGTCGCGATGGAGCCG+AGG | - | chr3.1:55974731-55974750 | MS.gene008202:intron | 70.0% | |
| TCGCGATGGAGCCGAGGTGG+CGG | - | chr3.1:55974737-55974756 | MS.gene008202:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 55974270 | 55976246 | 55974270 | ID=MS.gene008202 |
| chr3.1 | mRNA | 55974270 | 55976246 | 55974270 | ID=MS.gene008202.t1;Parent=MS.gene008202 |
| chr3.1 | exon | 55975656 | 55976246 | 55975656 | ID=MS.gene008202.t1.exon1;Parent=MS.gene008202.t1 |
| chr3.1 | CDS | 55975656 | 55976246 | 55975656 | ID=cds.MS.gene008202.t1;Parent=MS.gene008202.t1 |
| chr3.1 | exon | 55974270 | 55974329 | 55974270 | ID=MS.gene008202.t1.exon2;Parent=MS.gene008202.t1 |
| chr3.1 | CDS | 55974270 | 55974329 | 55974270 | ID=cds.MS.gene008202.t1;Parent=MS.gene008202.t1 |
| Gene Sequence |
| Protein sequence |
