Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008248.t1 | XP_013460594.1 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 3.40E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008248.t1 | Q8LE52 | 67.5 | 255 | 73 | 3 | 20 | 264 | 4 | 258 | 1.3e-97 | 357.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008248.t1 | Q4JR85 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 2.5e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75177 | MS.gene008248 | PPI |
| MS.gene008248 | MS.gene066447 | PPI |
| MS.gene029101 | MS.gene008248 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008248.t1 | MTR_3g066060 | 97.727 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 0.0 | 527 |
| MS.gene008248.t1 | MTR_1g115500 | 60.000 | 210 | 84 | 0 | 55 | 264 | 3 | 212 | 4.47e-93 | 273 |
| MS.gene008248.t1 | MTR_1g067180 | 27.363 | 201 | 127 | 7 | 72 | 259 | 33 | 227 | 2.20e-14 | 70.9 |
| MS.gene008248.t1 | MTR_1g067180 | 27.363 | 201 | 127 | 7 | 72 | 259 | 36 | 230 | 2.66e-14 | 70.9 |
| MS.gene008248.t1 | MTR_1g067150 | 25.510 | 196 | 118 | 6 | 72 | 263 | 31 | 202 | 2.94e-12 | 67.0 |
| MS.gene008248.t1 | MTR_7g100320 | 27.094 | 203 | 129 | 7 | 72 | 261 | 35 | 231 | 6.02e-12 | 64.3 |
| MS.gene008248.t1 | MTR_1g067170 | 26.943 | 193 | 116 | 6 | 72 | 261 | 33 | 203 | 3.44e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008248.t1 | AT5G16710 | 67.451 | 255 | 73 | 3 | 20 | 264 | 4 | 258 | 1.00e-125 | 358 |
| MS.gene008248.t1 | AT1G75270 | 62.201 | 209 | 78 | 1 | 55 | 262 | 3 | 211 | 1.09e-95 | 280 |
| MS.gene008248.t1 | AT1G19570 | 57.895 | 209 | 87 | 1 | 55 | 262 | 3 | 211 | 1.50e-86 | 257 |
| MS.gene008248.t1 | AT1G19550 | 47.531 | 162 | 62 | 1 | 101 | 262 | 13 | 151 | 6.93e-46 | 151 |
Find 70 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCTTCTCTACATTTAT+TGG | 0.132703 | 3.1:-55314303 | MS.gene008248:CDS |
| TTTCTTAAATCCACCAATTT+TGG | 0.148425 | 3.1:+55315154 | None:intergenic |
| AGCAACACTCTTTGGCTAAA+AGG | 0.217920 | 3.1:+55315208 | None:intergenic |
| TTTACCTTATGAGCCAAAAT+TGG | 0.268108 | 3.1:-55315167 | MS.gene008248:CDS |
| CTGAAGACATTGATACTCTA+AGG | 0.314821 | 3.1:+55317548 | None:intergenic |
| GCCTGTTCTGTTCCATCATT+GGG | 0.317203 | 3.1:+55314261 | None:intergenic |
| CTTTCCATCAAAATTTATTA+CGG | 0.320003 | 3.1:+55314985 | None:intergenic |
| TTACAGTCTCCAATCTTGTT+AGG | 0.323971 | 3.1:+55317475 | None:intergenic |
| TGCCTGTTCTGTTCCATCAT+TGG | 0.329262 | 3.1:+55314260 | None:intergenic |
| CTTTGGGACATTATAAGAAA+TGG | 0.339739 | 3.1:-55313584 | MS.gene008248:CDS |
| TATCATCAACCCTCTACTTT+AGG | 0.351222 | 3.1:+55312732 | None:intergenic |
| TACCATTTGGAGATTGCTTT+GGG | 0.358598 | 3.1:-55313600 | MS.gene008248:CDS |
| CCAGTGTCAGCAACACTCTT+TGG | 0.382066 | 3.1:+55315200 | None:intergenic |
| GGACAAGAAGATCACCATTC+TGG | 0.384402 | 3.1:+55315127 | None:intergenic |
| CTTACCACTCCTAACAAGAT+TGG | 0.386618 | 3.1:-55317484 | MS.gene008248:CDS |
| TACCTTCAGGACTGATTTCA+AGG | 0.389717 | 3.1:+55315014 | None:intergenic |
| TTTCCATCAAAATTTATTAC+GGG | 0.394965 | 3.1:+55314986 | None:intergenic |
| ATACCATTTGGAGATTGCTT+TGG | 0.401508 | 3.1:-55313601 | MS.gene008248:CDS |
| AGTTCCTCCTTCTGAGCCAT+TGG | 0.415341 | 3.1:-55317527 | MS.gene008248:CDS |
| TTCCTTGAGGTAATCATTGA+AGG | 0.431943 | 3.1:+55314218 | None:intergenic |
| ATAGCTTTGGTCCTAGTGAT+AGG | 0.433953 | 3.1:+55313622 | None:intergenic |
| ATTACGGGAACTTTACCTTC+AGG | 0.438595 | 3.1:+55315001 | None:intergenic |
| TCCCAATGATGGAACAGAAC+AGG | 0.440171 | 3.1:-55314262 | MS.gene008248:CDS |
| TCAGGTGGTGTCACCAATGG+TGG | 0.440607 | 3.1:+55314908 | None:intergenic |
| ATCTCCAAATGGTATAGCTT+TGG | 0.443085 | 3.1:+55313609 | None:intergenic |
| AATACTGAAACCGTTGTTGA+AGG | 0.447254 | 3.1:+55317576 | None:intergenic |
| AGGACCAAAGCTATACCATT+TGG | 0.449238 | 3.1:-55313613 | MS.gene008248:CDS |
| CTAGTTGAAACGGCGTAGCT+TGG | 0.457758 | 3.1:+55317601 | None:intergenic |
| GGTGTCACCAATGGTGGGCT+AGG | 0.458979 | 3.1:+55314914 | None:intergenic |
| ACGGTAACGAAGGTGGTTAA+CGG | 0.463252 | 3.1:+55317624 | None:intergenic |
| GCAACACTCTTTGGCTAAAA+GGG | 0.467390 | 3.1:+55315209 | None:intergenic |
| ATTGGTGACACCACCTGAAA+AGG | 0.468553 | 3.1:-55314903 | MS.gene008248:CDS |
| ACCTTATGAGCCAAAATTGG+TGG | 0.488536 | 3.1:-55315164 | MS.gene008248:CDS |
| ATGTGTTTCCCATTGACAAA+AGG | 0.492553 | 3.1:+55313657 | None:intergenic |
| AAGAGCAAAGATCCCAATGA+TGG | 0.512786 | 3.1:-55314273 | MS.gene008248:CDS |
| CCAAAGAGTGTTGCTGACAC+TGG | 0.519488 | 3.1:-55315200 | MS.gene008248:CDS |
| GTCCCAAAGCAATCTCCAAA+TGG | 0.525825 | 3.1:+55313598 | None:intergenic |
| TTGAAACGGCGTAGCTTGGA+CGG | 0.528321 | 3.1:+55317605 | None:intergenic |
| CAGCCGGAGGATGTCATTGA+AGG | 0.529861 | 3.1:-55312762 | MS.gene008248:CDS |
| GCAACTTCCAATGGCTCAGA+AGG | 0.530234 | 3.1:+55317520 | None:intergenic |
| CTTCAAGTAAGACTTCAAAA+AGG | 0.533977 | 3.1:+55313542 | None:intergenic |
| AGATTTAATCACACAAACAT+TGG | 0.534999 | 3.1:-55314948 | MS.gene008248:CDS |
| GCTTTAACAGCAACTTCCAA+TGG | 0.538010 | 3.1:+55317511 | None:intergenic |
| GTTGAAGGAGCTAGTTGAAA+CGG | 0.542410 | 3.1:+55317591 | None:intergenic |
| TGAATTCTAACGGTGGACAT+TGG | 0.546517 | 3.1:+55317673 | None:intergenic |
| CAGGTGGTGTCACCAATGGT+GGG | 0.551034 | 3.1:+55314909 | None:intergenic |
| CTCCTTCAATGATTACCTCA+AGG | 0.552514 | 3.1:-55314220 | MS.gene008248:CDS |
| CATTAACACACGTGCACAGC+CGG | 0.557161 | 3.1:-55312778 | MS.gene008248:CDS |
| GAAGTATCCTAGCCCACCAT+TGG | 0.558980 | 3.1:-55314921 | MS.gene008248:CDS |
| TGAAGACATTGATACTCTAA+GGG | 0.561246 | 3.1:+55317549 | None:intergenic |
| CAACCTTCAATGACATCCTC+CGG | 0.565403 | 3.1:+55312759 | None:intergenic |
| TTCCTTGAAATCAGTCCTGA+AGG | 0.565919 | 3.1:-55315016 | MS.gene008248:CDS |
| TCAACTAGCTCCTTCAACAA+CGG | 0.572004 | 3.1:-55317586 | MS.gene008248:CDS |
| CGGAGGATGTCATTGAAGGT+TGG | 0.572766 | 3.1:-55312758 | MS.gene008248:CDS |
| TGCTGAAACTTGAATTCTAA+CGG | 0.573659 | 3.1:+55317663 | None:intergenic |
| GTCTCCAATCTTGTTAGGAG+TGG | 0.575745 | 3.1:+55317480 | None:intergenic |
| ACGAAGGTGGTTAACGGTGG+CGG | 0.577042 | 3.1:+55317630 | None:intergenic |
| ACTTCCAATGGCTCAGAAGG+AGG | 0.609075 | 3.1:+55317523 | None:intergenic |
| ATTTAAGAAACAAACCAGAA+TGG | 0.617097 | 3.1:-55315141 | MS.gene008248:intron |
| AGGTTGGCGTCCTAAAGTAG+AGG | 0.619348 | 3.1:-55312742 | MS.gene008248:CDS |
| AGCTTGGACGGTAACGAAGG+TGG | 0.635574 | 3.1:+55317617 | None:intergenic |
| AAGAGTGTTGCTGACACTGG+AGG | 0.648023 | 3.1:-55315197 | MS.gene008248:CDS |
| GGTTGGCGTCCTAAAGTAGA+GGG | 0.649275 | 3.1:-55312741 | MS.gene008248:CDS |
| TCTGCGGCTGACCTATCACT+AGG | 0.671764 | 3.1:-55313633 | MS.gene008248:CDS |
| CGTAGCTTGGACGGTAACGA+AGG | 0.683732 | 3.1:+55317614 | None:intergenic |
| GAAGACATTGATACTCTAAG+GGG | 0.685434 | 3.1:+55317550 | None:intergenic |
| TAACACACGTGCACAGCCGG+AGG | 0.694276 | 3.1:-55312775 | MS.gene008248:CDS |
| CAATGGGAAACACATATCTG+CGG | 0.696422 | 3.1:-55313649 | MS.gene008248:CDS |
| GTAACGAAGGTGGTTAACGG+TGG | 0.742876 | 3.1:+55317627 | None:intergenic |
| TGAAACTTGAATTCTAACGG+TGG | 0.756125 | 3.1:+55317666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAATATAAAAATAAAG+AGG | + | chr3.1:55316022-55316041 | None:intergenic | 10.0% |
| !!! | AATGAATCTTTTTTTTTTTT+TGG | - | chr3.1:55313695-55313714 | MS.gene008248:intron | 10.0% |
| !!! | ATATTCTCTATTTTTTTTTT+TGG | - | chr3.1:55314357-55314376 | MS.gene008248:intron | 10.0% |
| !!! | ATTTTTGTTTATATTTGTAA+AGG | - | chr3.1:55314539-55314558 | MS.gene008248:intron | 10.0% |
| !!! | TCTTTATTTTTATATTTACA+TGG | - | chr3.1:55316021-55316040 | MS.gene008248:intron | 10.0% |
| !!! | TTTTAATTTTAATACATTCA+GGG | - | chr3.1:55315952-55315971 | MS.gene008248:intron | 10.0% |
| !!! | TTTTTAATTTTAATACATTC+AGG | - | chr3.1:55315951-55315970 | MS.gene008248:intron | 10.0% |
| !!! | TTTTTTTTTTGAAAAATACA+TGG | - | chr3.1:55315617-55315636 | MS.gene008248:intron | 10.0% |
| !! | CATTATTATTCATTTACATT+CGG | + | chr3.1:55317393-55317412 | None:intergenic | 15.0% |
| !! | TAAAAAATTTATACGAAAGA+AGG | + | chr3.1:55316700-55316719 | None:intergenic | 15.0% |
| !! | TGAATAGTTTATTAAATTTG+TGG | - | chr3.1:55317015-55317034 | MS.gene008248:intron | 15.0% |
| !! | TTATATTCATATAACTTTGA+GGG | - | chr3.1:55316624-55316643 | MS.gene008248:intron | 15.0% |
| !! | TTGTATTTAATAATCCTTAA+TGG | - | chr3.1:55317526-55317545 | MS.gene008248:CDS | 15.0% |
| !!! | CATAAATTTTGAAAATGTTT+AGG | - | chr3.1:55313228-55313247 | MS.gene008248:intron | 15.0% |
| !!! | TTATAAACTTTCAGTATTTT+AGG | - | chr3.1:55316261-55316280 | MS.gene008248:intron | 15.0% |
| !!! | TTATATGAATATAAGTGTTT+TGG | + | chr3.1:55316618-55316637 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATATATTCA+AGG | + | chr3.1:55315789-55315808 | None:intergenic | 15.0% |
| !! | AAAATAAAGAGGAATAAAGA+TGG | + | chr3.1:55316011-55316030 | None:intergenic | 20.0% |
| !! | AAATAACAAAAACCATGAAA+AGG | + | chr3.1:55312968-55312987 | None:intergenic | 20.0% |
| !! | AAATCAAAGAACAAAGATAA+AGG | + | chr3.1:55314963-55314982 | None:intergenic | 20.0% |
| !! | AATAACAAAAACCATGAAAA+GGG | + | chr3.1:55312967-55312986 | None:intergenic | 20.0% |
| !! | AGATGTTACAAAACATTAAA+CGG | - | chr3.1:55316396-55316415 | MS.gene008248:intron | 20.0% |
| !! | AGTGAAAATGATTTATCAAT+AGG | - | chr3.1:55317083-55317102 | MS.gene008248:intron | 20.0% |
| !! | CAATTATTCATAAACTTTAC+AGG | + | chr3.1:55316513-55316532 | None:intergenic | 20.0% |
| !! | CATTGAATACTTAATGTATT+CGG | + | chr3.1:55313679-55313698 | None:intergenic | 20.0% |
| !! | CTGTAAAGTTTATGAATAAT+TGG | - | chr3.1:55316511-55316530 | MS.gene008248:intron | 20.0% |
| !! | CTTATATTCATATAACTTTG+AGG | - | chr3.1:55316623-55316642 | MS.gene008248:intron | 20.0% |
| !! | CTTTCCATCAAAATTTATTA+CGG | + | chr3.1:55315425-55315444 | None:intergenic | 20.0% |
| !! | GTGAAAATGATTTATCAATA+GGG | - | chr3.1:55317084-55317103 | MS.gene008248:intron | 20.0% |
| !! | TGAATAAACAATTCAACAAA+GGG | + | chr3.1:55315176-55315195 | None:intergenic | 20.0% |
| !! | TTTCCATCAAAATTTATTAC+GGG | + | chr3.1:55315424-55315443 | None:intergenic | 20.0% |
| !! | TTTGCTAGTATATAATACTA+AGG | - | chr3.1:55313752-55313771 | MS.gene008248:intron | 20.0% |
| !!! | AATAAATTTTGATGGAAAGT+GGG | - | chr3.1:55315426-55315445 | MS.gene008248:intron | 20.0% |
| !!! | TAATAAATTTTGATGGAAAG+TGG | - | chr3.1:55315425-55315444 | MS.gene008248:intron | 20.0% |
| !!! | TTTATTTTTGCTTTAGTTCA+TGG | - | chr3.1:55314271-55314290 | MS.gene008248:CDS | 20.0% |
| !!! | TTTGTTCTTTGATTTAATTG+TGG | - | chr3.1:55314968-55314987 | MS.gene008248:CDS | 20.0% |
| ! | AAAATGTTTAGGAGTAAAGA+TGG | - | chr3.1:55313239-55313258 | MS.gene008248:intron | 25.0% |
| ! | AAACAAAGTAAACTCCATTA+AGG | + | chr3.1:55317543-55317562 | None:intergenic | 25.0% |
| ! | AAATGTTTAGGAGTAAAGAT+GGG | - | chr3.1:55313240-55313259 | MS.gene008248:intron | 25.0% |
| ! | AACAGTAATGTATATCAAGA+GGG | + | chr3.1:55316473-55316492 | None:intergenic | 25.0% |
| ! | AAGATCTTCTCTACATTTAT+TGG | - | chr3.1:55316104-55316123 | MS.gene008248:intron | 25.0% |
| ! | AGATTTAATCACACAAACAT+TGG | - | chr3.1:55315459-55315478 | MS.gene008248:intron | 25.0% |
| ! | ATGTTACAAAACATTAAACG+GGG | - | chr3.1:55316398-55316417 | MS.gene008248:intron | 25.0% |
| ! | ATTTAAGAAACAAACCAGAA+TGG | - | chr3.1:55315266-55315285 | MS.gene008248:intron | 25.0% |
| ! | CAACAAAACAAGTTATTACA+AGG | + | chr3.1:55315364-55315383 | None:intergenic | 25.0% |
| ! | CTGAATAAACAATTCAACAA+AGG | + | chr3.1:55315177-55315196 | None:intergenic | 25.0% |
| ! | CTTTGAATATACGGAAAAAT+TGG | + | chr3.1:55317182-55317201 | None:intergenic | 25.0% |
| ! | CTTTGTTGAATTGTTTATTC+AGG | - | chr3.1:55315175-55315194 | MS.gene008248:CDS | 25.0% |
| ! | GAAATTCAAATCACAAACAA+TGG | - | chr3.1:55313459-55313478 | MS.gene008248:intron | 25.0% |
| ! | GATGTTACAAAACATTAAAC+GGG | - | chr3.1:55316397-55316416 | MS.gene008248:intron | 25.0% |
| ! | GATTACATTAAATTATGTCG+AGG | - | chr3.1:55313171-55313190 | MS.gene008248:intron | 25.0% |
| ! | TAACAGTAATGTATATCAAG+AGG | + | chr3.1:55316474-55316493 | None:intergenic | 25.0% |
| ! | TAGTAATTAGGAATTTGATC+AGG | + | chr3.1:55314057-55314076 | None:intergenic | 25.0% |
| ! | TATAATAGACCAAATACACT+AGG | + | chr3.1:55313652-55313671 | None:intergenic | 25.0% |
| ! | TGATCAAATTCCTAATTACT+AGG | - | chr3.1:55314056-55314075 | MS.gene008248:intron | 25.0% |
| ! | TTATACATTTCCTTGTCATT+TGG | - | chr3.1:55315547-55315566 | MS.gene008248:intron | 25.0% |
| ! | TTTAATGTAATCACAAGTGT+CGG | + | chr3.1:55313163-55313182 | None:intergenic | 25.0% |
| ! | TTTGTAACATCTTATGTAGA+TGG | + | chr3.1:55316388-55316407 | None:intergenic | 25.0% |
| !! | AAAAATTCTTACCCTTTTCA+TGG | - | chr3.1:55312953-55312972 | MS.gene008248:intron | 25.0% |
| !! | ACTCAAAATGTTTTCAGTAA+GGG | - | chr3.1:55317250-55317269 | MS.gene008248:intron | 25.0% |
| !! | ATTAGTATTTGAGACATTGA+TGG | - | chr3.1:55313037-55313056 | MS.gene008248:intron | 25.0% |
| !! | ATTTTTCCGTATATTCAAAG+AGG | - | chr3.1:55317182-55317201 | MS.gene008248:intron | 25.0% |
| !! | CAATTGGTAATTGTACAAAA+GGG | + | chr3.1:55317318-55317337 | None:intergenic | 25.0% |
| !! | TACTCAAAATGTTTTCAGTA+AGG | - | chr3.1:55317249-55317268 | MS.gene008248:intron | 25.0% |
| !! | TCTAAAATTTAGCTAGTAAC+TGG | + | chr3.1:55314128-55314147 | None:intergenic | 25.0% |
| !! | TGAATTAAGTTTTACATCGT+TGG | - | chr3.1:55313575-55313594 | MS.gene008248:CDS | 25.0% |
| !! | TTCTTTCGTTAGCAATTTTA+TGG | + | chr3.1:55315914-55315933 | None:intergenic | 25.0% |
| !! | TTTCTTAAATCCACCAATTT+TGG | + | chr3.1:55315256-55315275 | None:intergenic | 25.0% |
| !!! | CATTTTGAGTATTGATGAAA+AGG | + | chr3.1:55317240-55317259 | None:intergenic | 25.0% |
| !!! | CTTGTAATAACTTGTTTTGT+TGG | - | chr3.1:55315362-55315381 | MS.gene008248:intron | 25.0% |
| !!! | GCTCTAAATTCAAATGTTTT+CGG | - | chr3.1:55317133-55317152 | MS.gene008248:intron | 25.0% |
| !!! | GTTTTGAACTTCTATTAAGA+TGG | - | chr3.1:55314220-55314239 | MS.gene008248:CDS | 25.0% |
| !!! | GTTTTTTGCTAATAAATGTC+TGG | + | chr3.1:55313613-55313632 | None:intergenic | 25.0% |
| !!! | TTGAGCTTGTTTTTTTGTAT+TGG | - | chr3.1:55312994-55313013 | MS.gene008248:intron | 25.0% |
| AAAAAGGAGTCCTAGTAATT+AGG | + | chr3.1:55314069-55314088 | None:intergenic | 30.0% | |
| AACCAAATGGTCAATTGAAT+CGG | - | chr3.1:55313976-55313995 | MS.gene008248:intron | 30.0% | |
| AAGATTGCAAACAAATAGCA+GGG | + | chr3.1:55316240-55316259 | None:intergenic | 30.0% | |
| AATATGATAGATGTTGAGTG+AGG | + | chr3.1:55316910-55316929 | None:intergenic | 30.0% | |
| AATGTTTAGGAGTAAAGATG+GGG | - | chr3.1:55313241-55313260 | MS.gene008248:intron | 30.0% | |
| AATTCACTCAAGTAGTATAC+AGG | + | chr3.1:55313561-55313580 | None:intergenic | 30.0% | |
| ACTGGTCATGTATGATTTAT+TGG | + | chr3.1:55314110-55314129 | None:intergenic | 30.0% | |
| AGAAAATATAACCTAGAGAG+AGG | - | chr3.1:55314692-55314711 | MS.gene008248:intron | 30.0% | |
| AGAACAAACTAGAGAAAGTT+TGG | + | chr3.1:55314807-55314826 | None:intergenic | 30.0% | |
| AGCTATAGACTATAATCACT+TGG | - | chr3.1:55315147-55315166 | MS.gene008248:CDS | 30.0% | |
| AGTAGTAGGGAAAAACATAA+CGG | + | chr3.1:55315699-55315718 | None:intergenic | 30.0% | |
| AGTTAGGAATTATTAGAGGA+AGG | - | chr3.1:55314779-55314798 | MS.gene008248:intron | 30.0% | |
| ATAAAATCAAATCCTACCCT+TGG | + | chr3.1:55313407-55313426 | None:intergenic | 30.0% | |
| ATACATGAACAGTAACCAAA+TGG | - | chr3.1:55313963-55313982 | MS.gene008248:intron | 30.0% | |
| ATAGTCAGCAAATAAATAGC+TGG | - | chr3.1:55316446-55316465 | MS.gene008248:intron | 30.0% | |
| ATGAAACTGCATCATAAGTA+CGG | + | chr3.1:55316990-55317009 | None:intergenic | 30.0% | |
| CAAATTATCTCCAAATGACA+AGG | + | chr3.1:55315560-55315579 | None:intergenic | 30.0% | |
| CTTCAAGTAAGACTTCAAAA+AGG | + | chr3.1:55316868-55316887 | None:intergenic | 30.0% | |
| GAAAATATAACCTAGAGAGA+GGG | - | chr3.1:55314693-55314712 | MS.gene008248:intron | 30.0% | |
| GTACAATTACCAATTGCTAA+AGG | - | chr3.1:55317322-55317341 | MS.gene008248:intron | 30.0% | |
| GTCAAAAACACAGTAGTTAT+AGG | + | chr3.1:55314656-55314675 | None:intergenic | 30.0% | |
| GTTATGAATAATCTGTTGCA+TGG | - | chr3.1:55313087-55313106 | MS.gene008248:intron | 30.0% | |
| TAAAATCAAATCCTACCCTT+GGG | + | chr3.1:55313406-55313425 | None:intergenic | 30.0% | |
| TAATAATTCCTAACTACCCA+AGG | + | chr3.1:55314774-55314793 | None:intergenic | 30.0% | |
| TAATTAGGAATTTGATCAGG+AGG | + | chr3.1:55314054-55314073 | None:intergenic | 30.0% | |
| TACTGTTCATGTATTGAGTA+CGG | + | chr3.1:55313957-55313976 | None:intergenic | 30.0% | |
| TAGTTCATGGATGTAGTAAA+TGG | - | chr3.1:55314284-55314303 | MS.gene008248:CDS | 30.0% | |
| TATTGAATGCCTAGTGTATT+TGG | - | chr3.1:55313640-55313659 | MS.gene008248:CDS | 30.0% | |
| TCGTAAGGAAAAAAAACATG+TGG | + | chr3.1:55317280-55317299 | None:intergenic | 30.0% | |
| TGAAGACATTGATACTCTAA+GGG | + | chr3.1:55312861-55312880 | None:intergenic | 30.0% | |
| TGCTGAAACTTGAATTCTAA+CGG | + | chr3.1:55312747-55312766 | None:intergenic | 30.0% | |
| TGCTTCTTAACAATCACAAA+CGG | - | chr3.1:55317347-55317366 | MS.gene008248:intron | 30.0% | |
| TTATGTAGATGGAGTATAAG+AGG | + | chr3.1:55316377-55316396 | None:intergenic | 30.0% | |
| TTTACCTTATGAGCCAAAAT+TGG | - | chr3.1:55315240-55315259 | MS.gene008248:intron | 30.0% | |
| TTTGCTAATAAATGTCTGGA+GGG | + | chr3.1:55313609-55313628 | None:intergenic | 30.0% | |
| ! | AAAGTCATACATTTTCCTTG+AGG | + | chr3.1:55316205-55316224 | None:intergenic | 30.0% |
| ! | ATTTGAGACATTGATGGTAT+TGG | - | chr3.1:55313043-55313062 | MS.gene008248:intron | 30.0% |
| ! | CATGTGATTTTGTCTATAGT+GGG | - | chr3.1:55316078-55316097 | MS.gene008248:intron | 30.0% |
| ! | CTCAAAATGTTTTCAGTAAG+GGG | - | chr3.1:55317251-55317270 | MS.gene008248:intron | 30.0% |
| ! | CTTGTCATTTGGAGATAATT+TGG | - | chr3.1:55315558-55315577 | MS.gene008248:intron | 30.0% |
| ! | GCAATTGGTAATTGTACAAA+AGG | + | chr3.1:55317319-55317338 | None:intergenic | 30.0% |
| ! | GTTCCCGTAATAAATTTTGA+TGG | - | chr3.1:55315418-55315437 | MS.gene008248:intron | 30.0% |
| ! | TAGGTTGCTAGATTTACTTT+TGG | - | chr3.1:55315005-55315024 | MS.gene008248:CDS | 30.0% |
| ! | TTTTGCTAATAAATGTCTGG+AGG | + | chr3.1:55313610-55313629 | None:intergenic | 30.0% |
| !! | ATGGTATTGGTAGAAAGAAT+AGG | - | chr3.1:55313056-55313075 | MS.gene008248:intron | 30.0% |
| !! | CTTTGGGACATTATAAGAAA+TGG | - | chr3.1:55316823-55316842 | MS.gene008248:intron | 30.0% |
| !! | TGGTATTGGTAGAAAGAATA+GGG | - | chr3.1:55313057-55313076 | MS.gene008248:intron | 30.0% |
| !!! | ATAACTTGTTTTGTTGGTTC+AGG | - | chr3.1:55315368-55315387 | MS.gene008248:intron | 30.0% |
| !!! | CTTTTTGAAGTCTTACTTGA+AGG | - | chr3.1:55316866-55316885 | MS.gene008248:intron | 30.0% |
| AAAATCTGACATGCAGTAGT+AGG | + | chr3.1:55315713-55315732 | None:intergenic | 35.0% | |
| AAATCTGACATGCAGTAGTA+GGG | + | chr3.1:55315712-55315731 | None:intergenic | 35.0% | |
| AATACTGAAACCGTTGTTGA+AGG | + | chr3.1:55312834-55312853 | None:intergenic | 35.0% | |
| ACCAAGGAAAATTGCATTCA+TGG | + | chr3.1:55315818-55315837 | None:intergenic | 35.0% | |
| ACGACAATAGAAAACGTTGA+TGG | + | chr3.1:55315329-55315348 | None:intergenic | 35.0% | |
| ACTCTATGATTCCAATACAG+AGG | + | chr3.1:55314321-55314340 | None:intergenic | 35.0% | |
| AGAAATTGGGGACAATTTCT+TGG | - | chr3.1:55314867-55314886 | MS.gene008248:intron | 35.0% | |
| ATACCATTTGGAGATTGCTT+TGG | - | chr3.1:55316806-55316825 | MS.gene008248:intron | 35.0% | |
| ATCTCCAAATGGTATAGCTT+TGG | + | chr3.1:55316801-55316820 | None:intergenic | 35.0% | |
| ATGTATTGAGTACGGTTCAT+AGG | + | chr3.1:55313949-55313968 | None:intergenic | 35.0% | |
| ATGTGTTTCCCATTGACAAA+AGG | + | chr3.1:55316753-55316772 | None:intergenic | 35.0% | |
| ATGTTTAGGAGTAAAGATGG+GGG | - | chr3.1:55313242-55313261 | MS.gene008248:intron | 35.0% | |
| CAAGATTGCAAACAAATAGC+AGG | + | chr3.1:55316241-55316260 | None:intergenic | 35.0% | |
| CCAAAGCCTCTTTGAATATA+CGG | + | chr3.1:55317191-55317210 | None:intergenic | 35.0% | |
| CCACTACAAGAAAGGTTATA+GGG | + | chr3.1:55316337-55316356 | None:intergenic | 35.0% | |
| CCTATAACCTTTCTTGTAGT+GGG | - | chr3.1:55316335-55316354 | MS.gene008248:intron | 35.0% | |
| CTGAAGACATTGATACTCTA+AGG | + | chr3.1:55312862-55312881 | None:intergenic | 35.0% | |
| CTGCATTTGAGTCTTAAACT+TGG | - | chr3.1:55315121-55315140 | MS.gene008248:intron | 35.0% | |
| CTTGTGTCATACTATTCGTA+AGG | + | chr3.1:55317295-55317314 | None:intergenic | 35.0% | |
| GAAGACATTGATACTCTAAG+GGG | + | chr3.1:55312860-55312879 | None:intergenic | 35.0% | |
| GATCGTTTGATTACGCAATT+CGG | - | chr3.1:55313487-55313506 | MS.gene008248:intron | 35.0% | |
| GGGTAGTTAGGAATTATTAG+AGG | - | chr3.1:55314775-55314794 | MS.gene008248:intron | 35.0% | |
| GTAGTAGGGAAAAACATAAC+GGG | + | chr3.1:55315698-55315717 | None:intergenic | 35.0% | |
| GTGACATCTGATAGATTCAA+AGG | + | chr3.1:55315760-55315779 | None:intergenic | 35.0% | |
| TACCATTTGGAGATTGCTTT+GGG | - | chr3.1:55316807-55316826 | MS.gene008248:intron | 35.0% | |
| TATAAGAGGAACCAGTTAAG+CGG | + | chr3.1:55316363-55316382 | None:intergenic | 35.0% | |
| TCACACCAAGACAATAATTG+TGG | + | chr3.1:55315084-55315103 | None:intergenic | 35.0% | |
| TCAGAAGAAACTCCAAATTC+AGG | + | chr3.1:55317113-55317132 | None:intergenic | 35.0% | |
| TCAGGGATATTGTTGTAATC+TGG | + | chr3.1:55313779-55313798 | None:intergenic | 35.0% | |
| TCTAACAATGCTGAACTTAC+AGG | - | chr3.1:55317584-55317603 | MS.gene008248:CDS | 35.0% | |
| TGAAACTGCATCATAAGTAC+GGG | + | chr3.1:55316989-55317008 | None:intergenic | 35.0% | |
| TGAAACTTGAATTCTAACGG+TGG | + | chr3.1:55312744-55312763 | None:intergenic | 35.0% | |
| TGAGTGATTCATCTTTGAGT+GGG | - | chr3.1:55314827-55314846 | MS.gene008248:intron | 35.0% | |
| TGCCTTAAAATCAGCTGTTT+GGG | - | chr3.1:55314566-55314585 | MS.gene008248:intron | 35.0% | |
| TTACAGTCTCCAATCTTGTT+AGG | + | chr3.1:55312935-55312954 | None:intergenic | 35.0% | |
| TTCAAAAAGGTCAGTGAATC+AGG | + | chr3.1:55316855-55316874 | None:intergenic | 35.0% | |
| TTCAAGAACCAAATTGACCA+AGG | + | chr3.1:55315834-55315853 | None:intergenic | 35.0% | |
| TTCCTTGAGGTAATCATTGA+AGG | + | chr3.1:55316192-55316211 | None:intergenic | 35.0% | |
| TTGAGTGATTCATCTTTGAG+TGG | - | chr3.1:55314826-55314845 | MS.gene008248:intron | 35.0% | |
| TTGCTCCACAATTATTGTCT+TGG | - | chr3.1:55315076-55315095 | MS.gene008248:intron | 35.0% | |
| TTTGGTTGATTACTGTTGCT+TGG | - | chr3.1:55315023-55315042 | MS.gene008248:intron | 35.0% | |
| ! | ACTTACAGGAAATTTTCTCG+AGG | - | chr3.1:55317598-55317617 | MS.gene008248:CDS | 35.0% |
| ! | CTACATCTTTTCCTGCATTA+TGG | - | chr3.1:55316304-55316323 | MS.gene008248:intron | 35.0% |
| ! | CTTACAGGAAATTTTCTCGA+GGG | - | chr3.1:55317599-55317618 | MS.gene008248:CDS | 35.0% |
| ! | GCAATTTTCCTTGGTCAATT+TGG | - | chr3.1:55315823-55315842 | MS.gene008248:intron | 35.0% |
| ! | GCATGTGATTTTGTCTATAG+TGG | - | chr3.1:55316077-55316096 | MS.gene008248:intron | 35.0% |
| ! | TCCATGAATGCAATTTTCCT+TGG | - | chr3.1:55315814-55315833 | MS.gene008248:intron | 35.0% |
| ! | TTACTAGGACTCCTTTTTCT+TGG | - | chr3.1:55314071-55314090 | MS.gene008248:intron | 35.0% |
| ! | TTTTCTTGTCTCGATCTTTC+TGG | - | chr3.1:55316652-55316671 | MS.gene008248:intron | 35.0% |
| !! | TGTGGATTTGCTATACATCT+AGG | - | chr3.1:55314986-55315005 | MS.gene008248:CDS | 35.0% |
| !!! | ACTTTTAAAGTGTGGAGAAG+TGG | - | chr3.1:55314407-55314426 | MS.gene008248:intron | 35.0% |
| !!! | CTTTTAAAGTGTGGAGAAGT+GGG | - | chr3.1:55314408-55314427 | MS.gene008248:intron | 35.0% |
| !!! | GATCACACACTTTTAAAGTG+TGG | - | chr3.1:55314399-55314418 | MS.gene008248:intron | 35.0% |
| !!! | TTTTAAAGTGTGGAGAAGTG+GGG | - | chr3.1:55314409-55314428 | MS.gene008248:intron | 35.0% |
| !!! | TTTTTGGTTCAATAGCCTAG+TGG | - | chr3.1:55314373-55314392 | MS.gene008248:intron | 35.0% |
| AACAGATCATCTAGGGATTG+TGG | + | chr3.1:55317492-55317511 | None:intergenic | 40.0% | |
| AAGAGCAAAGATCCCAATGA+TGG | - | chr3.1:55316134-55316153 | MS.gene008248:intron | 40.0% | |
| ACACAGACAACAGATCATCT+AGG | + | chr3.1:55317500-55317519 | None:intergenic | 40.0% | |
| ACAGATCATCTAGGGATTGT+GGG | + | chr3.1:55317491-55317510 | None:intergenic | 40.0% | |
| ACCTTATGAGCCAAAATTGG+TGG | - | chr3.1:55315243-55315262 | MS.gene008248:intron | 40.0% | |
| ACGGTTCATAGGCACAATAA+AGG | + | chr3.1:55313938-55313957 | None:intergenic | 40.0% | |
| AGAGAGGAAAGGAGAGAAAT+TGG | - | chr3.1:55314853-55314872 | MS.gene008248:intron | 40.0% | |
| AGAGGAAAGGAGAGAAATTG+GGG | - | chr3.1:55314855-55314874 | MS.gene008248:intron | 40.0% | |
| AGCAACACTCTTTGGCTAAA+AGG | + | chr3.1:55315202-55315221 | None:intergenic | 40.0% | |
| AGGACCAAAGCTATACCATT+TGG | - | chr3.1:55316794-55316813 | MS.gene008248:intron | 40.0% | |
| ATCAGGAGGTAAGTAAAGTC+TGG | + | chr3.1:55314040-55314059 | None:intergenic | 40.0% | |
| ATGATAGATGTTGAGTGAGG+AGG | + | chr3.1:55316907-55316926 | None:intergenic | 40.0% | |
| ATTACGGGAACTTTACCTTC+AGG | + | chr3.1:55315409-55315428 | None:intergenic | 40.0% | |
| CAATACAACAGCCTCTGTAT+TGG | - | chr3.1:55314307-55314326 | MS.gene008248:CDS | 40.0% | |
| CAATGGGAAACACATATCTG+CGG | - | chr3.1:55316758-55316777 | MS.gene008248:intron | 40.0% | |
| CACAGACAACAGATCATCTA+GGG | + | chr3.1:55317499-55317518 | None:intergenic | 40.0% | |
| CCCACTACAAGAAAGGTTAT+AGG | + | chr3.1:55316338-55316357 | None:intergenic | 40.0% | |
| CCCTATAACCTTTCTTGTAG+TGG | - | chr3.1:55316334-55316353 | MS.gene008248:intron | 40.0% | |
| CCGTATATTCAAAGAGGCTT+TGG | - | chr3.1:55317188-55317207 | MS.gene008248:intron | 40.0% | |
| CGGTTCATAGGCACAATAAA+GGG | + | chr3.1:55313937-55313956 | None:intergenic | 40.0% | |
| CTAACCCTGTTCCAAGAAAA+AGG | + | chr3.1:55314085-55314104 | None:intergenic | 40.0% | |
| CTCCGATTCAATTGACCATT+TGG | + | chr3.1:55313981-55314000 | None:intergenic | 40.0% | |
| CTCCTTCAATGATTACCTCA+AGG | - | chr3.1:55316187-55316206 | MS.gene008248:intron | 40.0% | |
| CTTACCACTCCTAACAAGAT+TGG | - | chr3.1:55312923-55312942 | MS.gene008248:intron | 40.0% | |
| GACAACAAGCTGACAACAAT+TGG | + | chr3.1:55317469-55317488 | None:intergenic | 40.0% | |
| GACAACAATTGGTGAAAAGG+AGG | + | chr3.1:55317458-55317477 | None:intergenic | 40.0% | |
| GACACCGTATGACACAATTA+GGG | - | chr3.1:55315984-55316003 | MS.gene008248:intron | 40.0% | |
| GAGAGGAAAGGAGAGAAATT+GGG | - | chr3.1:55314854-55314873 | MS.gene008248:intron | 40.0% | |
| GCAACACTCTTTGGCTAAAA+GGG | + | chr3.1:55315201-55315220 | None:intergenic | 40.0% | |
| GCCTTAAAATCAGCTGTTTG+GGG | - | chr3.1:55314567-55314586 | MS.gene008248:intron | 40.0% | |
| GCTAACGAAAGAAACTCACA+TGG | - | chr3.1:55315921-55315940 | MS.gene008248:intron | 40.0% | |
| GCTGACAACAATTGGTGAAA+AGG | + | chr3.1:55317461-55317480 | None:intergenic | 40.0% | |
| GCTTTAACAGCAACTTCCAA+TGG | + | chr3.1:55312899-55312918 | None:intergenic | 40.0% | |
| GGTTCATAGGCACAATAAAG+GGG | + | chr3.1:55313936-55313955 | None:intergenic | 40.0% | |
| GTAGAAAGAATAGGGTAGTG+TGG | - | chr3.1:55313065-55313084 | MS.gene008248:intron | 40.0% | |
| GTGCCTTAAAATCAGCTGTT+TGG | - | chr3.1:55314565-55314584 | MS.gene008248:intron | 40.0% | |
| GTTGAAGGAGCTAGTTGAAA+CGG | + | chr3.1:55312819-55312838 | None:intergenic | 40.0% | |
| TAGCCTGTGATCTTTAAGCA+TGG | + | chr3.1:55317060-55317079 | None:intergenic | 40.0% | |
| TCAACTAGCTCCTTCAACAA+CGG | - | chr3.1:55312821-55312840 | MS.gene008248:intron | 40.0% | |
| TCAATAGGGAGACCTGAATT+TGG | - | chr3.1:55317098-55317117 | MS.gene008248:intron | 40.0% | |
| TCCAAGTTCAAATTCTGACC+AGG | - | chr3.1:55314003-55314022 | MS.gene008248:intron | 40.0% | |
| TCCTGGTCAGAATTTGAACT+TGG | + | chr3.1:55314007-55314026 | None:intergenic | 40.0% | |
| TGACACCGTATGACACAATT+AGG | - | chr3.1:55315983-55316002 | MS.gene008248:intron | 40.0% | |
| TGGTCCCTAATTGTGTCATA+CGG | + | chr3.1:55315991-55316010 | None:intergenic | 40.0% | |
| TGTCCATGCTTAAAGATCAC+AGG | - | chr3.1:55317054-55317073 | MS.gene008248:intron | 40.0% | |
| TTCCTTGAAATCAGTCCTGA+AGG | - | chr3.1:55315391-55315410 | MS.gene008248:intron | 40.0% | |
| TTTGAGAACCAGACTGACTA+AGG | + | chr3.1:55315866-55315885 | None:intergenic | 40.0% | |
| ! | CTTTTCCTGCATTATGGTCA+TGG | - | chr3.1:55316310-55316329 | MS.gene008248:intron | 40.0% |
| ! | CTTTTTCTTGGAACAGGGTT+AGG | - | chr3.1:55314083-55314102 | MS.gene008248:intron | 40.0% |
| ! | GACTCCTTTTTCTTGGAACA+GGG | - | chr3.1:55314078-55314097 | MS.gene008248:intron | 40.0% |
| ! | TACCTTCAGGACTGATTTCA+AGG | + | chr3.1:55315396-55315415 | None:intergenic | 40.0% |
| !! | AAATTGGTTTGCAAAGCCCA+AGG | + | chr3.1:55317166-55317185 | None:intergenic | 40.0% |
| !! | ACCCCAAACAGCTGATTTTA+AGG | + | chr3.1:55314571-55314590 | None:intergenic | 40.0% |
| !! | AGAAGCACTCCTTTAGCAAT+TGG | + | chr3.1:55317334-55317353 | None:intergenic | 40.0% |
| !! | AGGGTATCGGTATCATCATA+AGG | + | chr3.1:55313380-55313399 | None:intergenic | 40.0% |
| !! | ATAGCTTTGGTCCTAGTGAT+AGG | + | chr3.1:55316788-55316807 | None:intergenic | 40.0% |
| !! | GGGTATCGGTATCATCATAA+GGG | + | chr3.1:55313379-55313398 | None:intergenic | 40.0% |
| !! | TACTGTTGCTTGGACTGTTT+TGG | - | chr3.1:55315033-55315052 | MS.gene008248:intron | 40.0% |
| !! | TAGAAAACGTTGATGGCTTG+TGG | + | chr3.1:55315322-55315341 | None:intergenic | 40.0% |
| !!! | TCCACCAATTTTGGCTCATA+AGG | + | chr3.1:55315247-55315266 | None:intergenic | 40.0% |
| AAATCCTACCCTTGGGTAGA+GGG | + | chr3.1:55313399-55313418 | None:intergenic | 45.0% | |
| AACACGACACATGTCGGATA+AGG | + | chr3.1:55313135-55313154 | None:intergenic | 45.0% | |
| AAGACTTTGTTCGCCCAGTT+CGG | + | chr3.1:55314922-55314941 | None:intergenic | 45.0% | |
| AAGTGTGTGATCTAGCCACT+AGG | + | chr3.1:55314391-55314410 | None:intergenic | 45.0% | |
| ACCAACTGAGCTACACTTAC+TGG | - | chr3.1:55314480-55314499 | MS.gene008248:intron | 45.0% | |
| ACGGTAACGAAGGTGGTTAA+CGG | + | chr3.1:55312786-55312805 | None:intergenic | 45.0% | |
| ACTCTGTAGTCTAGTCAGAG+AGG | + | chr3.1:55313529-55313548 | None:intergenic | 45.0% | |
| AGGGAACACGGAAAAACCTA+GGG | - | chr3.1:55314712-55314731 | MS.gene008248:intron | 45.0% | |
| AGTCTGGTCAAGAAATGTCC+TGG | + | chr3.1:55314024-55314043 | None:intergenic | 45.0% | |
| ATAGGCACAATAAAGGGGCA+AGG | + | chr3.1:55313931-55313950 | None:intergenic | 45.0% | |
| ATATCCCTGAAACGTACCAC+AGG | - | chr3.1:55313789-55313808 | MS.gene008248:intron | 45.0% | |
| ATGCAGGAAAAGATGTAGCC+AGG | + | chr3.1:55316302-55316321 | None:intergenic | 45.0% | |
| CAAATGCAAGGAAGGGTGAA+AGG | - | chr3.1:55313876-55313895 | MS.gene008248:intron | 45.0% | |
| CAACCTTCAATGACATCCTC+CGG | + | chr3.1:55317651-55317670 | None:intergenic | 45.0% | |
| CCAAATTGACCTACTTCTGG+GGG | + | chr3.1:55314898-55314917 | None:intergenic | 45.0% | |
| CCCAAATTGACCTACTTCTG+GGG | + | chr3.1:55314899-55314918 | None:intergenic | 45.0% | |
| CCCCAGAAGTAGGTCAATTT+GGG | - | chr3.1:55314896-55314915 | MS.gene008248:CDS | 45.0% | |
| CTTTCACCCTTCCTTGCATT+TGG | + | chr3.1:55313878-55313897 | None:intergenic | 45.0% | |
| GCATGGACACTTCTGATTGA+AGG | - | chr3.1:55313104-55313123 | MS.gene008248:intron | 45.0% | |
| GCCCAAATTGACCTACTTCT+GGG | + | chr3.1:55314900-55314919 | None:intergenic | 45.0% | |
| GCCTGTTCTGTTCCATCATT+GGG | + | chr3.1:55316149-55316168 | None:intergenic | 45.0% | |
| GGACAAGAAGATCACCATTC+TGG | + | chr3.1:55315283-55315302 | None:intergenic | 45.0% | |
| GTCCCAAAGCAATCTCCAAA+TGG | + | chr3.1:55316812-55316831 | None:intergenic | 45.0% | |
| GTCTCCAATCTTGTTAGGAG+TGG | + | chr3.1:55312930-55312949 | None:intergenic | 45.0% | |
| GTTTGGCCAAATGCAAGGAA+GGG | - | chr3.1:55313869-55313888 | MS.gene008248:intron | 45.0% | |
| TAACCTAGAGAGAGGGAACA+CGG | - | chr3.1:55314700-55314719 | MS.gene008248:intron | 45.0% | |
| TACCAGGGACAATGTTTGCA+GGG | + | chr3.1:55314457-55314476 | None:intergenic | 45.0% | |
| TAGGCACAATAAAGGGGCAA+GGG | + | chr3.1:55313930-55313949 | None:intergenic | 45.0% | |
| TATCCCTGAAACGTACCACA+GGG | - | chr3.1:55313790-55313809 | MS.gene008248:intron | 45.0% | |
| TATGAAGCACGACACAGACA+CGG | + | chr3.1:55313212-55313231 | None:intergenic | 45.0% | |
| TCCAGTAAGTGTAGCTCAGT+TGG | + | chr3.1:55314484-55314503 | None:intergenic | 45.0% | |
| TGCAAACAAATAGCAGGGAG+AGG | + | chr3.1:55316235-55316254 | None:intergenic | 45.0% | |
| TGCCTGTTCTGTTCCATCAT+TGG | + | chr3.1:55316150-55316169 | None:intergenic | 45.0% | |
| TGTGGTCGGTAAGTGAAACA+TGG | + | chr3.1:55315304-55315323 | None:intergenic | 45.0% | |
| ! | AATCAGCTGTTTGGGGTTTC+TGG | - | chr3.1:55314574-55314593 | MS.gene008248:intron | 45.0% |
| ! | ACACAGGGTCCTTTTGTCAA+TGG | - | chr3.1:55316741-55316760 | MS.gene008248:intron | 45.0% |
| ! | ATGTTTTCGGTCATGTGCCT+TGG | - | chr3.1:55317146-55317165 | MS.gene008248:intron | 45.0% |
| ! | ATTGGTGACACCACCTGAAA+AGG | - | chr3.1:55315504-55315523 | MS.gene008248:intron | 45.0% |
| ! | CACAGGGTCCTTTTGTCAAT+GGG | - | chr3.1:55316742-55316761 | MS.gene008248:intron | 45.0% |
| ! | GGACTCCTTTTTCTTGGAAC+AGG | - | chr3.1:55314077-55314096 | MS.gene008248:intron | 45.0% |
| ! | TCCCAATGATGGAACAGAAC+AGG | - | chr3.1:55316145-55316164 | MS.gene008248:intron | 45.0% |
| ! | TGTTTTCGGTCATGTGCCTT+GGG | - | chr3.1:55317147-55317166 | MS.gene008248:intron | 45.0% |
| !! | AAACGTTGATGGCTTGTGGT+CGG | + | chr3.1:55315318-55315337 | None:intergenic | 45.0% |
| !! | ATCTTTGAGTGGGTTGAGAG+AGG | - | chr3.1:55314837-55314856 | MS.gene008248:intron | 45.0% |
| !! | TTCAAAGAGGCTTTGGCTCT+AGG | - | chr3.1:55317195-55317214 | MS.gene008248:intron | 45.0% |
| !! | TTCGAGTGTTGAGAGCTCTT+GGG | - | chr3.1:55314735-55314754 | MS.gene008248:intron | 45.0% |
| !!! | GCTTGGACTGTTTTGGTTGT+TGG | - | chr3.1:55315040-55315059 | MS.gene008248:intron | 45.0% |
| !!! | TTTTCAGGTGGTGTCACCAA+TGG | + | chr3.1:55315505-55315524 | None:intergenic | 45.0% |
| AAGGCTACAGCGTATGCTTC+TGG | - | chr3.1:55315523-55315542 | MS.gene008248:intron | 50.0% | |
| ACCAGGGACAATGTTTGCAG+GGG | + | chr3.1:55314456-55314475 | None:intergenic | 50.0% | |
| ACTTCCAATGGCTCAGAAGG+AGG | + | chr3.1:55312887-55312906 | None:intergenic | 50.0% | |
| AGGGTCCATGACCATAATGC+AGG | + | chr3.1:55316318-55316337 | None:intergenic | 50.0% | |
| AGGTCAATTTGGGCCGAACT+GGG | - | chr3.1:55314906-55314925 | MS.gene008248:CDS | 50.0% | |
| AGGTCTCTCAATCTCTGACC+TGG | - | chr3.1:55316281-55316300 | MS.gene008248:intron | 50.0% | |
| AGGTTGGCGTCCTAAAGTAG+AGG | - | chr3.1:55317665-55317684 | MS.gene008248:CDS | 50.0% | |
| AGTTCCTCCTTCTGAGCCAT+TGG | - | chr3.1:55312880-55312899 | MS.gene008248:intron | 50.0% | |
| ATACCGATACCCTCTACCCA+AGG | - | chr3.1:55313387-55313406 | MS.gene008248:intron | 50.0% | |
| ATCCCCTGTGGTACGTTTCA+GGG | + | chr3.1:55313796-55313815 | None:intergenic | 50.0% | |
| ATCCCTGAAACGTACCACAG+GGG | - | chr3.1:55313791-55313810 | MS.gene008248:intron | 50.0% | |
| CAAATCCTACCCTTGGGTAG+AGG | + | chr3.1:55313400-55313419 | None:intergenic | 50.0% | |
| CATTAACACACGTGCACAGC+CGG | - | chr3.1:55317629-55317648 | MS.gene008248:CDS | 50.0% | |
| CCAGTGTCAGCAACACTCTT+TGG | + | chr3.1:55315210-55315229 | None:intergenic | 50.0% | |
| CCCCCAGAAGTAGGTCAATT+TGG | - | chr3.1:55314895-55314914 | MS.gene008248:intron | 50.0% | |
| CGGAGGATGTCATTGAAGGT+TGG | - | chr3.1:55317649-55317668 | MS.gene008248:CDS | 50.0% | |
| CGTTTGGCCAAATGCAAGGA+AGG | - | chr3.1:55313868-55313887 | MS.gene008248:intron | 50.0% | |
| CTACCAGGGACAATGTTTGC+AGG | + | chr3.1:55314458-55314477 | None:intergenic | 50.0% | |
| CTAGTTGAAACGGCGTAGCT+TGG | + | chr3.1:55312809-55312828 | None:intergenic | 50.0% | |
| GAGGGAACACGGAAAAACCT+AGG | - | chr3.1:55314711-55314730 | MS.gene008248:intron | 50.0% | |
| GCAACTTCCAATGGCTCAGA+AGG | + | chr3.1:55312890-55312909 | None:intergenic | 50.0% | |
| GGCCCAAATTGACCTACTTC+TGG | + | chr3.1:55314901-55314920 | None:intergenic | 50.0% | |
| GGTTGGCGTCCTAAAGTAGA+GGG | - | chr3.1:55317666-55317685 | MS.gene008248:CDS | 50.0% | |
| GTAACGAAGGTGGTTAACGG+TGG | + | chr3.1:55312783-55312802 | None:intergenic | 50.0% | |
| GTATCTCGCCTTAGTCAGTC+TGG | - | chr3.1:55315855-55315874 | MS.gene008248:intron | 50.0% | |
| GTGTCGAACACGACACATGT+CGG | + | chr3.1:55313141-55313160 | None:intergenic | 50.0% | |
| TACCGATACCCTCTACCCAA+GGG | - | chr3.1:55313388-55313407 | MS.gene008248:intron | 50.0% | |
| TAGGTCAATTTGGGCCGAAC+TGG | - | chr3.1:55314905-55314924 | MS.gene008248:CDS | 50.0% | |
| TATCCCCTGTGGTACGTTTC+AGG | + | chr3.1:55313797-55313816 | None:intergenic | 50.0% | |
| TTGAAACGGCGTAGCTTGGA+CGG | + | chr3.1:55312805-55312824 | None:intergenic | 50.0% | |
| TTTCCGTGTTCCCTCTCTCT+AGG | + | chr3.1:55314706-55314725 | None:intergenic | 50.0% | |
| TTTGTTGCAGGGAGCGACTA+GGG | + | chr3.1:55313831-55313850 | None:intergenic | 50.0% | |
| ! | AAGCCCGACTGTTTGTTGCA+GGG | + | chr3.1:55313842-55313861 | None:intergenic | 50.0% |
| ! | GAAGTATCCTAGCCCACCAT+TGG | - | chr3.1:55315486-55315505 | MS.gene008248:intron | 50.0% |
| ! | GCATACGCTGTAGCCTTTTC+AGG | + | chr3.1:55315520-55315539 | None:intergenic | 50.0% |
| ! | TAAGCCCGACTGTTTGTTGC+AGG | + | chr3.1:55313843-55313862 | None:intergenic | 50.0% |
| ! | TACCCTTGGGTAGAGGGTAT+CGG | + | chr3.1:55313393-55313412 | None:intergenic | 50.0% |
| !! | AAGAGTGTTGCTGACACTGG+AGG | - | chr3.1:55315210-55315229 | MS.gene008248:CDS | 50.0% |
| !! | AGCTCAGTTGGTAGCTACCA+GGG | + | chr3.1:55314472-55314491 | None:intergenic | 50.0% |
| !! | CCAAAGAGTGTTGCTGACAC+TGG | - | chr3.1:55315207-55315226 | MS.gene008248:CDS | 50.0% |
| !! | GTTCGAGTGTTGAGAGCTCT+TGG | - | chr3.1:55314734-55314753 | MS.gene008248:intron | 50.0% |
| !! | TACGCTGTAGCCTTTTCAGG+TGG | + | chr3.1:55315517-55315536 | None:intergenic | 50.0% |
| !! | TAGCTCAGTTGGTAGCTACC+AGG | + | chr3.1:55314473-55314492 | None:intergenic | 50.0% |
| !! | TGAGTGGGTTGAGAGAGGAA+AGG | - | chr3.1:55314842-55314861 | MS.gene008248:intron | 50.0% |
| !! | TTCTAGGGCCTTGGGTAGTT+AGG | - | chr3.1:55314763-55314782 | MS.gene008248:intron | 50.0% |
| ACGAAGGTGGTTAACGGTGG+CGG | + | chr3.1:55312780-55312799 | None:intergenic | 55.0% | |
| AGCGGTGCCCACTACAAGAA+AGG | + | chr3.1:55316345-55316364 | None:intergenic | 55.0% | |
| AGCTCTTGGGCGAGGTTCTA+GGG | - | chr3.1:55314748-55314767 | MS.gene008248:intron | 55.0% | |
| AGCTTGGACGGTAACGAAGG+TGG | + | chr3.1:55312793-55312812 | None:intergenic | 55.0% | |
| AGTCGGGCTTAACGCACGTT+TGG | - | chr3.1:55313852-55313871 | MS.gene008248:intron | 55.0% | |
| CAGCCGGAGGATGTCATTGA+AGG | - | chr3.1:55317645-55317664 | MS.gene008248:CDS | 55.0% | |
| CGCACGTTTGGCCAAATGCA+AGG | - | chr3.1:55313864-55313883 | MS.gene008248:intron | 55.0% | |
| CGCTCCCTGCAACAAACAGT+CGG | - | chr3.1:55313835-55313854 | MS.gene008248:intron | 55.0% | |
| CGTAGCTTGGACGGTAACGA+AGG | + | chr3.1:55312796-55312815 | None:intergenic | 55.0% | |
| GACAATGTTTGCAGGGGACG+GGG | + | chr3.1:55314450-55314469 | None:intergenic | 55.0% | |
| GATACCCTCTACCCAAGGGT+AGG | - | chr3.1:55313392-55313411 | MS.gene008248:intron | 55.0% | |
| GCTCCCTGCAACAAACAGTC+GGG | - | chr3.1:55313836-55313855 | MS.gene008248:intron | 55.0% | |
| GCTCTCAACACTCGAACCCT+AGG | + | chr3.1:55314731-55314750 | None:intergenic | 55.0% | |
| GGACAATGTTTGCAGGGGAC+GGG | + | chr3.1:55314451-55314470 | None:intergenic | 55.0% | |
| GGGACAATGTTTGCAGGGGA+CGG | + | chr3.1:55314452-55314471 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | - | chr3.1:55314416-55314435 | MS.gene008248:intron | 55.0% | |
| TCCCCTGCAAACATTGTCCC+TGG | - | chr3.1:55314452-55314471 | MS.gene008248:intron | 55.0% | |
| TCTGCGGCTGACCTATCACT+AGG | - | chr3.1:55316774-55316793 | MS.gene008248:intron | 55.0% | |
| TGTGGAGAAGTGGGGAATCC+GGG | - | chr3.1:55314417-55314436 | MS.gene008248:intron | 55.0% | |
| TTGGTCACTCCCCCAGAAGT+AGG | - | chr3.1:55314886-55314905 | MS.gene008248:intron | 55.0% | |
| ! | CAGCTGTTTGGGGTTTCTGG+TGG | - | chr3.1:55314577-55314596 | MS.gene008248:intron | 55.0% |
| ! | GTTTGTTGCAGGGAGCGACT+AGG | + | chr3.1:55313832-55313851 | None:intergenic | 55.0% |
| !! | CAGGTGGTGTCACCAATGGT+GGG | + | chr3.1:55315501-55315520 | None:intergenic | 55.0% |
| !! | TCAGGTGGTGTCACCAATGG+TGG | + | chr3.1:55315502-55315521 | None:intergenic | 55.0% |
| !! | TGTAGTGGGCACCGCTTAAC+TGG | - | chr3.1:55316349-55316368 | MS.gene008248:intron | 55.0% |
| GAGCTCTTGGGCGAGGTTCT+AGG | - | chr3.1:55314747-55314766 | MS.gene008248:intron | 60.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | - | chr3.1:55314418-55314437 | MS.gene008248:intron | 60.0% | |
| GTGTTGAGAGCTCTTGGGCG+AGG | - | chr3.1:55314740-55314759 | MS.gene008248:intron | 60.0% | |
| TAACACACGTGCACAGCCGG+AGG | - | chr3.1:55317632-55317651 | MS.gene008248:CDS | 60.0% | |
| TGCAGGGGAGATATCCCCTG+TGG | + | chr3.1:55313808-55313827 | None:intergenic | 60.0% | |
| !! | GGTGTCACCAATGGTGGGCT+AGG | + | chr3.1:55315496-55315515 | None:intergenic | 60.0% |
| AGGGAGCGACTAGGGTGCAG+GGG | + | chr3.1:55313823-55313842 | None:intergenic | 65.0% | |
| CAGGGAGCGACTAGGGTGCA+GGG | + | chr3.1:55313824-55313843 | None:intergenic | 65.0% | |
| !! | GGGCGAGGTTCTAGGGCCTT+GGG | - | chr3.1:55314755-55314774 | MS.gene008248:intron | 65.0% |
| !! | TGGGCGAGGTTCTAGGGCCT+TGG | - | chr3.1:55314754-55314773 | MS.gene008248:intron | 65.0% |
| AGGGGACGGGGTTCGAACCC+CGG | + | chr3.1:55314438-55314457 | None:intergenic | 70.0% | |
| GCAGGGAGCGACTAGGGTGC+AGG | + | chr3.1:55313825-55313844 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 55312737 | 55317692 | 55312737 | ID=MS.gene008248 |
| chr3.1 | mRNA | 55312737 | 55317692 | 55312737 | ID=MS.gene008248.t1;Parent=MS.gene008248 |
| chr3.1 | exon | 55317479 | 55317692 | 55317479 | ID=MS.gene008248.t1.exon1;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55317479 | 55317692 | 55317479 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| chr3.1 | exon | 55315142 | 55315232 | 55315142 | ID=MS.gene008248.t1.exon2;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55315142 | 55315232 | 55315142 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| chr3.1 | exon | 55314896 | 55315039 | 55314896 | ID=MS.gene008248.t1.exon3;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55314896 | 55315039 | 55314896 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| chr3.1 | exon | 55314215 | 55314332 | 55314215 | ID=MS.gene008248.t1.exon4;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55314215 | 55314332 | 55314215 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| chr3.1 | exon | 55313542 | 55313682 | 55313542 | ID=MS.gene008248.t1.exon5;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55313542 | 55313682 | 55313542 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| chr3.1 | exon | 55312737 | 55312823 | 55312737 | ID=MS.gene008248.t1.exon6;Parent=MS.gene008248.t1 |
| chr3.1 | CDS | 55312737 | 55312823 | 55312737 | ID=cds.MS.gene008248.t1;Parent=MS.gene008248.t1 |
| Gene Sequence |
| Protein sequence |
