Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029101.t1 | XP_013470460.1 | 93.9 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 1.40E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029101.t1 | Q9FRL8 | 73.7 | 213 | 55 | 1 | 1 | 212 | 1 | 213 | 1.1e-89 | 330.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029101.t1 | I3T9M4 | 93.9 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 1.0e-109 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029101 | MS.gene04939 | PPI |
| MS.gene029101 | MS.gene63264 | PPI |
| MS.gene029101 | MS.gene008248 | PPI |
| MS.gene029101 | MS.gene62289 | PPI |
| MS.gene029101 | MS.gene04938 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029101.t1 | MTR_1g115500 | 93.868 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 2.02e-146 | 406 |
| MS.gene029101.t1 | MTR_3g066060 | 60.096 | 208 | 83 | 0 | 3 | 210 | 55 | 262 | 2.29e-93 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029101.t1 | AT1G75270 | 73.709 | 213 | 55 | 1 | 1 | 212 | 1 | 213 | 5.60e-115 | 327 |
| MS.gene029101.t1 | AT1G19570 | 74.057 | 212 | 54 | 1 | 1 | 211 | 1 | 212 | 6.04e-115 | 327 |
| MS.gene029101.t1 | AT5G16710 | 60.577 | 208 | 82 | 0 | 3 | 210 | 49 | 256 | 3.32e-96 | 281 |
| MS.gene029101.t1 | AT1G19550 | 55.172 | 174 | 51 | 3 | 41 | 211 | 3 | 152 | 3.35e-60 | 186 |
Find 58 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCAAGTTTGATGGTAAA+TGG | 0.194555 | 1.3:+78807928 | MS.gene029101:CDS |
| TTGGACTATTCCTGAGAATT+TGG | 0.207787 | 1.3:+78808922 | MS.gene029101:CDS |
| AAGAGAACCCTTTGGGAAAA+TGG | 0.223837 | 1.3:-78807721 | None:intergenic |
| ATTTCAGGGGATCAAATATA+TGG | 0.237821 | 1.3:+78808601 | MS.gene029101:intron |
| CACAGCTGTTGATTTGAGTT+TGG | 0.323954 | 1.3:+78808853 | MS.gene029101:CDS |
| CTACTTCATGCATTGACCTT+TGG | 0.348598 | 1.3:-78810613 | None:intergenic |
| CCTGATTCTGATGTTATTGT+TGG | 0.361346 | 1.3:+78807954 | MS.gene029101:CDS |
| TGCTTTGGATGAACATCTTA+AGG | 0.363226 | 1.3:+78808698 | MS.gene029101:CDS |
| ACCACTAGATGGTACAGTTT+TGG | 0.363899 | 1.3:-78808878 | None:intergenic |
| CAAAGTTAAGAGAACCCTTT+GGG | 0.367512 | 1.3:-78807728 | None:intergenic |
| TAACAGGGTCCATTTGTTGC+TGG | 0.379644 | 1.3:+78808821 | MS.gene029101:intron |
| GTTAGCAGAACTCAATGCTT+TGG | 0.381868 | 1.3:+78808683 | MS.gene029101:CDS |
| GTTCCAGTGGTCAAGTTTGA+TGG | 0.383379 | 1.3:+78807921 | MS.gene029101:CDS |
| CCAAAGGGTTCTCTTAACTT+TGG | 0.391179 | 1.3:+78807729 | MS.gene029101:CDS |
| TGGACCTTTGCCAAATTCTC+AGG | 0.406140 | 1.3:-78808932 | None:intergenic |
| AACAGGGTCCATTTGTTGCT+GGG | 0.421851 | 1.3:+78808822 | MS.gene029101:intron |
| GACATACTCCTCTGCAGCCT+TGG | 0.421971 | 1.3:-78810575 | None:intergenic |
| GCAGAGGAGTATGTCATTGC+TGG | 0.422618 | 1.3:+78810583 | MS.gene029101:CDS |
| GGAGAAACAAGAGATGGTTC+AGG | 0.422879 | 1.3:-78807996 | None:intergenic |
| CCAAAGTTAAGAGAACCCTT+TGG | 0.428562 | 1.3:-78807729 | None:intergenic |
| TTAATCAAATGGATGTTGTA+TGG | 0.432983 | 1.3:-78807766 | None:intergenic |
| AGAGTACCATTGGGGTTTGT+CGG | 0.436593 | 1.3:-78807794 | None:intergenic |
| TGTCGGAGATATTAATCAAA+TGG | 0.447813 | 1.3:-78807777 | None:intergenic |
| ACCTTCTCCCCAGCAACAAA+TGG | 0.454458 | 1.3:-78808830 | None:intergenic |
| GTTGGTGCTCCAACTGTTCT+CGG | 0.458021 | 1.3:+78807606 | MS.gene029101:CDS |
| GGTCAAGTTTGATGGTAAAT+GGG | 0.460396 | 1.3:+78807929 | MS.gene029101:CDS |
| TGAATCCTTGCTCTTCAGAA+AGG | 0.466931 | 1.3:-78808637 | None:intergenic |
| CCAACAATAACATCAGAATC+AGG | 0.477453 | 1.3:-78807954 | None:intergenic |
| GGCTCTTGAGGTTGCTGTCA+AGG | 0.478726 | 1.3:+78807578 | MS.gene029101:CDS |
| ACCACTGGAACCTTCCCTCC+AGG | 0.482366 | 1.3:-78807909 | None:intergenic |
| AAGAGCAAGGATTCAAATGA+TGG | 0.484327 | 1.3:+78808645 | MS.gene029101:CDS |
| TCCATTTGTTGCTGGGGAGA+AGG | 0.485126 | 1.3:+78808829 | MS.gene029101:CDS |
| GACCAAGTGCTACCACTAGA+TGG | 0.490749 | 1.3:-78808889 | None:intergenic |
| CGTGACCTTTCTGAAGAGCA+AGG | 0.493675 | 1.3:+78808632 | MS.gene029101:CDS |
| TTACCATCAAACTTGACCAC+TGG | 0.501479 | 1.3:-78807924 | None:intergenic |
| GTTGCTGTCAAGGCTGCTGT+TGG | 0.509413 | 1.3:+78807588 | MS.gene029101:CDS |
| CACTTGGTCACTTCAAGAGT+TGG | 0.517047 | 1.3:+78808903 | MS.gene029101:CDS |
| TTTCAGGGGATCAAATATAT+GGG | 0.518607 | 1.3:+78808602 | MS.gene029101:intron |
| TACACTGAGGAAAATTGAGC+AGG | 0.548119 | 1.3:-78808017 | None:intergenic |
| AGGAGTATGTCATTGCTGGA+TGG | 0.548576 | 1.3:+78810587 | MS.gene029101:CDS |
| CATTGCTGGATGGGCACCAA+AGG | 0.555766 | 1.3:+78810597 | MS.gene029101:CDS |
| ATCATCGCAAATGGCTCTTG+AGG | 0.559050 | 1.3:+78807566 | None:intergenic |
| GGAAGTGAATCCTGGAGGGA+AGG | 0.560932 | 1.3:+78807899 | MS.gene029101:CDS |
| GAGAAACAAGAGATGGTTCA+GGG | 0.568330 | 1.3:-78807995 | None:intergenic |
| GGAGTATGTCATTGCTGGAT+GGG | 0.575558 | 1.3:+78810588 | MS.gene029101:CDS |
| CGAGAAAACCAAGGCTGCAG+AGG | 0.575652 | 1.3:+78810567 | MS.gene029101:CDS |
| ACAGGGTCCATTTGTTGCTG+GGG | 0.596245 | 1.3:+78808823 | MS.gene029101:intron |
| TACCATCTAGTGGTAGCACT+TGG | 0.606458 | 1.3:+78808887 | MS.gene029101:CDS |
| TCCTGGAGGGAAGGTTCCAG+TGG | 0.613379 | 1.3:+78807908 | MS.gene029101:CDS |
| TATTCCTGAGAATTTGGCAA+AGG | 0.623001 | 1.3:+78808928 | MS.gene029101:CDS |
| GTACAGTCTCCGAGAACAGT+TGG | 0.629766 | 1.3:-78807615 | None:intergenic |
| TTTGTACCTTGATGTAGTTG+TGG | 0.632536 | 1.3:-78808952 | None:intergenic |
| AAAGGTCCACAACTACATCA+AGG | 0.634770 | 1.3:+78808946 | MS.gene029101:CDS |
| TGAGCAGGAGAAACAAGAGA+TGG | 0.641215 | 1.3:-78808002 | None:intergenic |
| TTGAATTTAGAGTACCATTG+GGG | 0.655225 | 1.3:-78807802 | None:intergenic |
| ACCAAAACTGTACCATCTAG+TGG | 0.659489 | 1.3:+78808877 | MS.gene029101:CDS |
| ATATCTCCGACAAACCCCAA+TGG | 0.672245 | 1.3:+78807788 | MS.gene029101:CDS |
| TGAATCATTCGAGAAAACCA+AGG | 0.685046 | 1.3:+78810558 | MS.gene029101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATTAATAATCAAACA+CGG | - | chr1.3:78808517-78808536 | None:intergenic | 10.0% |
| !! | TTGATAAATAATATATTACA+CGG | - | chr1.3:78810308-78810327 | None:intergenic | 10.0% |
| !!! | AATCAAATTTTGAAATTTAA+AGG | - | chr1.3:78810175-78810194 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTAGAGAAAA+GGG | - | chr1.3:78809760-78809779 | None:intergenic | 10.0% |
| !! | ATAAATTCACATATATACAT+TGG | - | chr1.3:78808724-78808743 | None:intergenic | 15.0% |
| !!! | AAATTTTGAAATTTAAAGGA+GGG | - | chr1.3:78810171-78810190 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAGAGAAA+AGG | - | chr1.3:78809761-78809780 | None:intergenic | 15.0% |
| !!! | TTAATAGGTTATATAACTTT+TGG | + | chr1.3:78810247-78810266 | MS.gene029101:intron | 15.0% |
| !!! | TTTATTTATTTGTAGGTTTT+TGG | + | chr1.3:78807878-78807897 | MS.gene029101:intron | 15.0% |
| !!! | TTTGAAAGTATAAAAATAGA+GGG | - | chr1.3:78808061-78808080 | None:intergenic | 15.0% |
| !!! | TTTTATTTCTTTGAATTTTG+TGG | + | chr1.3:78807851-78807870 | MS.gene029101:intron | 15.0% |
| !!! | TTTTTTTTTTTAGAGAAAAG+GGG | - | chr1.3:78809759-78809778 | None:intergenic | 15.0% |
| !! | ACATTTCCAATATCAAATTA+TGG | + | chr1.3:78809361-78809380 | MS.gene029101:intron | 20.0% |
| !! | CATTTCCAATATCAAATTAT+GGG | + | chr1.3:78809362-78809381 | MS.gene029101:intron | 20.0% |
| !! | TATATGAATTGATTGATTGA+TGG | + | chr1.3:78810501-78810520 | MS.gene029101:intron | 20.0% |
| !! | TATGCTAAAAAAATGTTACA+TGG | - | chr1.3:78809655-78809674 | None:intergenic | 20.0% |
| !! | TGGCTTATTTATTTATTTGT+AGG | + | chr1.3:78807871-78807890 | MS.gene029101:intron | 20.0% |
| !!! | AATTTTGAAATTTAAAGGAG+GGG | - | chr1.3:78810170-78810189 | None:intergenic | 20.0% |
| !!! | ATGTTACTTTCTATATTTTG+TGG | + | chr1.3:78808127-78808146 | MS.gene029101:intron | 20.0% |
| !!! | CAAATTTTGAAATTTAAAGG+AGG | - | chr1.3:78810172-78810191 | None:intergenic | 20.0% |
| !!! | GTTTGAAAGTATAAAAATAG+AGG | - | chr1.3:78808062-78808081 | None:intergenic | 20.0% |
| !!! | TGTTACTTTCTATATTTTGT+GGG | + | chr1.3:78808128-78808147 | MS.gene029101:intron | 20.0% |
| !!! | TTTCATTTGTTTTCATTTTC+AGG | + | chr1.3:78807697-78807716 | MS.gene029101:intron | 20.0% |
| !!! | TTTCATTTTTTTGGATAAAG+TGG | - | chr1.3:78809783-78809802 | None:intergenic | 20.0% |
| ! | AAATACATCAATACTCCTAA+AGG | - | chr1.3:78810361-78810380 | None:intergenic | 25.0% |
| ! | AAGTACAACAAAAAAACAGT+TGG | - | chr1.3:78809128-78809147 | None:intergenic | 25.0% |
| ! | ATGGATGTAATCTTATCTTA+TGG | + | chr1.3:78808988-78809007 | MS.gene029101:intron | 25.0% |
| ! | ATTGTAGAAGTTGACAATTA+GGG | + | chr1.3:78809941-78809960 | MS.gene029101:intron | 25.0% |
| ! | CAAACAAAGCTATATTATTG+TGG | + | chr1.3:78808470-78808489 | MS.gene029101:intron | 25.0% |
| ! | CAAGTGATTAAATTTATCTC+TGG | + | chr1.3:78809677-78809696 | MS.gene029101:intron | 25.0% |
| ! | GTTAATTAGCTATCAATTAC+AGG | - | chr1.3:78808779-78808798 | None:intergenic | 25.0% |
| ! | TCATAAATCAAAGAAACAAC+AGG | - | chr1.3:78810035-78810054 | None:intergenic | 25.0% |
| ! | TCATCACATCATTAGTTAAT+AGG | + | chr1.3:78810232-78810251 | MS.gene029101:intron | 25.0% |
| ! | TTAATCAAATGGATGTTGTA+TGG | - | chr1.3:78807769-78807788 | None:intergenic | 25.0% |
| ! | TTACGAAAATAAGCTGAAAA+CGG | - | chr1.3:78808312-78808331 | None:intergenic | 25.0% |
| !! | ATTGGATAGAGATTTCTTTT+AGG | + | chr1.3:78809556-78809575 | MS.gene029101:intron | 25.0% |
| !! | GTTGTAGGTATTGTAAATTA+AGG | - | chr1.3:78810420-78810439 | None:intergenic | 25.0% |
| !!! | AAGCATGCTTTTCATTTTTT+TGG | - | chr1.3:78809792-78809811 | None:intergenic | 25.0% |
| !!! | CACAATAATATAGCTTTGTT+TGG | - | chr1.3:78808472-78808491 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAATCTTACATAT+TGG | + | chr1.3:78809538-78809557 | MS.gene029101:intron | 25.0% |
| !!! | TACAAAGTTGTTTTCTGTAA+TGG | + | chr1.3:78808969-78808988 | MS.gene029101:intron | 25.0% |
| !!! | TTTTTTTCAGCAAATGCAAA+AGG | - | chr1.3:78810448-78810467 | None:intergenic | 25.0% |
| AATCGTGAAAAATGTAGAAC+CGG | - | chr1.3:78807678-78807697 | None:intergenic | 30.0% | |
| AATTGTCAACTTCTACAATC+TGG | - | chr1.3:78809940-78809959 | None:intergenic | 30.0% | |
| ATATATCGAGTTAGACCTTT+AGG | + | chr1.3:78810343-78810362 | MS.gene029101:intron | 30.0% | |
| ATCTTCAGACTTAAAGTTGA+TGG | - | chr1.3:78810114-78810133 | None:intergenic | 30.0% | |
| ATTTCAGGGGATCAAATATA+TGG | + | chr1.3:78808601-78808620 | MS.gene029101:intron | 30.0% | |
| GATATGGATGAAAGATGTAT+GGG | - | chr1.3:78809442-78809461 | None:intergenic | 30.0% | |
| GATTGTAGAAGTTGACAATT+AGG | + | chr1.3:78809940-78809959 | MS.gene029101:intron | 30.0% | |
| GCAAACCCATAATTTGATAT+TGG | - | chr1.3:78809370-78809389 | None:intergenic | 30.0% | |
| TAAAGTCTGAACTTAAAGCT+GGG | + | chr1.3:78809518-78809537 | MS.gene029101:intron | 30.0% | |
| TACCTAAGAGATTCATTGTA+TGG | - | chr1.3:78810389-78810408 | None:intergenic | 30.0% | |
| TAGTTCACATTAACTAGTCA+TGG | + | chr1.3:78809987-78810006 | MS.gene029101:intron | 30.0% | |
| TATATTACACGGATTCAATG+TGG | - | chr1.3:78810297-78810316 | None:intergenic | 30.0% | |
| TGATATGGATGAAAGATGTA+TGG | - | chr1.3:78809443-78809462 | None:intergenic | 30.0% | |
| TGTCGGAGATATTAATCAAA+TGG | - | chr1.3:78807780-78807799 | None:intergenic | 30.0% | |
| TTAAAGTCTGAACTTAAAGC+TGG | + | chr1.3:78809517-78809536 | MS.gene029101:intron | 30.0% | |
| TTATGAAGAAACTTCAAGTG+TGG | - | chr1.3:78809157-78809176 | None:intergenic | 30.0% | |
| TTGAATACCATCTTGCAAAT+GGG | - | chr1.3:78808097-78808116 | None:intergenic | 30.0% | |
| TTTCAGGGGATCAAATATAT+GGG | + | chr1.3:78808602-78808621 | MS.gene029101:intron | 30.0% | |
| ! | AGTTGAATTTAGAGTACCAT+TGG | - | chr1.3:78807807-78807826 | None:intergenic | 30.0% |
| ! | GTTGAATTTAGAGTACCATT+GGG | - | chr1.3:78807806-78807825 | None:intergenic | 30.0% |
| ! | TTGAATTTAGAGTACCATTG+GGG | - | chr1.3:78807805-78807824 | None:intergenic | 30.0% |
| ! | TTTCTATATTTTGTGGGATG+AGG | + | chr1.3:78808134-78808153 | MS.gene029101:intron | 30.0% |
| !! | AATTATGCGTGGCTATTTTA+GGG | + | chr1.3:78809583-78809602 | MS.gene029101:intron | 30.0% |
| !! | CTGAGATTTATTTCTGTTAC+CGG | + | chr1.3:78807656-78807675 | MS.gene029101:intron | 30.0% |
| !! | GTACTTCAATCGTTTTGATA+TGG | - | chr1.3:78809458-78809477 | None:intergenic | 30.0% |
| !! | TCACTTTTCATAAGCTATCA+TGG | - | chr1.3:78808340-78808359 | None:intergenic | 30.0% |
| !!! | GTATACATGCTTGTTTTGAT+TGG | + | chr1.3:78808196-78808215 | MS.gene029101:intron | 30.0% |
| !!! | TCTTTGTTTTAAAGCAAAGC+TGG | + | chr1.3:78809289-78809308 | MS.gene029101:intron | 30.0% |
| !!! | TTTTTTTTAGAGAAAAGGGG+AGG | - | chr1.3:78809756-78809775 | None:intergenic | 30.0% |
| AAGAGCAAGGATTCAAATGA+TGG | + | chr1.3:78808645-78808664 | MS.gene029101:CDS | 35.0% | |
| AATTAACCACACTAACATGC+TGG | + | chr1.3:78808792-78808811 | MS.gene029101:intron | 35.0% | |
| ACGCAAAAGACATGACTAAA+AGG | - | chr1.3:78809017-78809036 | None:intergenic | 35.0% | |
| CAAAGTTAAGAGAACCCTTT+GGG | - | chr1.3:78807731-78807750 | None:intergenic | 35.0% | |
| CCAACAATAACATCAGAATC+AGG | - | chr1.3:78807957-78807976 | None:intergenic | 35.0% | |
| CCTGATTCTGATGTTATTGT+TGG | + | chr1.3:78807954-78807973 | MS.gene029101:CDS | 35.0% | |
| CGCAAAAGACATGACTAAAA+GGG | - | chr1.3:78809016-78809035 | None:intergenic | 35.0% | |
| CTTGAATACCATCTTGCAAA+TGG | - | chr1.3:78808098-78808117 | None:intergenic | 35.0% | |
| GGTGAGTTAAGAAATAGAGA+AGG | - | chr1.3:78809735-78809754 | None:intergenic | 35.0% | |
| GTCCATACAATGAATCTCTT+AGG | + | chr1.3:78810384-78810403 | MS.gene029101:intron | 35.0% | |
| TATTCCTGAGAATTTGGCAA+AGG | + | chr1.3:78808928-78808947 | MS.gene029101:CDS | 35.0% | |
| TCACGATGTTCACAATTTCA+GGG | + | chr1.3:78808587-78808606 | MS.gene029101:intron | 35.0% | |
| TGAATACCATCTTGCAAATG+GGG | - | chr1.3:78808096-78808115 | None:intergenic | 35.0% | |
| TGAATCATTCGAGAAAACCA+AGG | + | chr1.3:78810558-78810577 | MS.gene029101:CDS | 35.0% | |
| TGTAGTCAACATAAAGTGTG+TGG | + | chr1.3:78809218-78809237 | MS.gene029101:intron | 35.0% | |
| TTCACAGCTGTTCAATTCAA+TGG | - | chr1.3:78809042-78809061 | None:intergenic | 35.0% | |
| TTCACGATGTTCACAATTTC+AGG | + | chr1.3:78808586-78808605 | MS.gene029101:intron | 35.0% | |
| TTGGACTATTCCTGAGAATT+TGG | + | chr1.3:78808922-78808941 | MS.gene029101:CDS | 35.0% | |
| TTTGTACCTTGATGTAGTTG+TGG | - | chr1.3:78808955-78808974 | None:intergenic | 35.0% | |
| ! | AGTTCAATGAAGCATCAGTA+AGG | - | chr1.3:78809884-78809903 | None:intergenic | 35.0% |
| ! | ATGCAAAAGGCTTTAGTTGT+AGG | - | chr1.3:78810435-78810454 | None:intergenic | 35.0% |
| ! | CAATTTGCTTCTGGAAAGAT+TGG | - | chr1.3:78809329-78809348 | None:intergenic | 35.0% |
| ! | GGTCAAGTTTGATGGTAAAT+GGG | + | chr1.3:78807929-78807948 | MS.gene029101:CDS | 35.0% |
| ! | GTTCAATGAAGCATCAGTAA+GGG | - | chr1.3:78809883-78809902 | None:intergenic | 35.0% |
| ! | TGCTTTGGATGAACATCTTA+AGG | + | chr1.3:78808698-78808717 | MS.gene029101:CDS | 35.0% |
| ! | TGGTCAAGTTTGATGGTAAA+TGG | + | chr1.3:78807928-78807947 | MS.gene029101:CDS | 35.0% |
| ! | TGTGAACATCAATTTGCTTC+TGG | - | chr1.3:78809338-78809357 | None:intergenic | 35.0% |
| !! | CAATTATGCGTGGCTATTTT+AGG | + | chr1.3:78809582-78809601 | MS.gene029101:intron | 35.0% |
| !! | CATGCTTTTCTTATTTGCCA+GGG | + | chr1.3:78809805-78809824 | MS.gene029101:intron | 35.0% |
| !! | TGCTGGTGTCATGAAAAAAT+TGG | + | chr1.3:78809396-78809415 | MS.gene029101:intron | 35.0% |
| !! | TGGTGTCATGAAAAAATTGG+TGG | + | chr1.3:78809399-78809418 | MS.gene029101:intron | 35.0% |
| !! | TTTTAGGTCTCAATTATGCG+TGG | + | chr1.3:78809572-78809591 | MS.gene029101:intron | 35.0% |
| AAAGGTCCACAACTACATCA+AGG | + | chr1.3:78808946-78808965 | MS.gene029101:CDS | 40.0% | |
| AATAAGCTGAAAACGGCTTG+TGG | - | chr1.3:78808305-78808324 | None:intergenic | 40.0% | |
| ACCAAAACTGTACCATCTAG+TGG | + | chr1.3:78808877-78808896 | MS.gene029101:CDS | 40.0% | |
| ACTATTCCCCATTTGCAAGA+TGG | + | chr1.3:78808087-78808106 | MS.gene029101:intron | 40.0% | |
| ATAAGCTGAAAACGGCTTGT+GGG | - | chr1.3:78808304-78808323 | None:intergenic | 40.0% | |
| CACGATGTTCACAATTTCAG+GGG | + | chr1.3:78808588-78808607 | MS.gene029101:intron | 40.0% | |
| CCAAAGGGTTCTCTTAACTT+TGG | + | chr1.3:78807729-78807748 | MS.gene029101:CDS | 40.0% | |
| CCAAAGTTAAGAGAACCCTT+TGG | - | chr1.3:78807732-78807751 | None:intergenic | 40.0% | |
| GAGAAACAAGAGATGGTTCA+GGG | - | chr1.3:78807998-78808017 | None:intergenic | 40.0% | |
| GGATAATTAAGAGTGAACCC+TGG | - | chr1.3:78809825-78809844 | None:intergenic | 40.0% | |
| GTCAACATAAAGTGTGTGGA+AGG | + | chr1.3:78809222-78809241 | MS.gene029101:intron | 40.0% | |
| GTTAGCAGAACTCAATGCTT+TGG | + | chr1.3:78808683-78808702 | MS.gene029101:CDS | 40.0% | |
| TACACTGAGGAAAATTGAGC+AGG | - | chr1.3:78808020-78808039 | None:intergenic | 40.0% | |
| TATCCTGCTTGACATGTACA+TGG | + | chr1.3:78809840-78809859 | MS.gene029101:intron | 40.0% | |
| TGAATCCTTGCTCTTCAGAA+AGG | - | chr1.3:78808640-78808659 | None:intergenic | 40.0% | |
| TGATGTGATGTCATACACTG+AGG | - | chr1.3:78808033-78808052 | None:intergenic | 40.0% | |
| TGGATGAAAGATGTATGGGA+AGG | - | chr1.3:78809438-78809457 | None:intergenic | 40.0% | |
| TTACCATCAAACTTGACCAC+TGG | - | chr1.3:78807927-78807946 | None:intergenic | 40.0% | |
| ! | AAGAGAACCCTTTGGGAAAA+TGG | - | chr1.3:78807724-78807743 | None:intergenic | 40.0% |
| ! | ACCACTAGATGGTACAGTTT+TGG | - | chr1.3:78808881-78808900 | None:intergenic | 40.0% |
| ! | TGCTTGGCAATGAGAACTTT+TGG | + | chr1.3:78809085-78809104 | MS.gene029101:intron | 40.0% |
| ! | TTCAGGTCCATTTTCCCAAA+GGG | + | chr1.3:78807714-78807733 | MS.gene029101:intron | 40.0% |
| !! | AACATGCTGGAGGTATTAAC+AGG | + | chr1.3:78808805-78808824 | MS.gene029101:intron | 40.0% |
| !! | AACTGCATGATGGCATTGAT+TGG | + | chr1.3:78809062-78809081 | MS.gene029101:intron | 40.0% |
| !! | ACATGCTGGAGGTATTAACA+GGG | + | chr1.3:78808806-78808825 | MS.gene029101:intron | 40.0% |
| !! | AGGTTTTTGGAAGTGAATCC+TGG | + | chr1.3:78807891-78807910 | MS.gene029101:intron | 40.0% |
| !! | CACAGCTGTTGATTTGAGTT+TGG | + | chr1.3:78808853-78808872 | MS.gene029101:CDS | 40.0% |
| !! | GCATGCTTTTCTTATTTGCC+AGG | + | chr1.3:78809804-78809823 | MS.gene029101:intron | 40.0% |
| !! | TTTCAGGTCCATTTTCCCAA+AGG | + | chr1.3:78807713-78807732 | MS.gene029101:intron | 40.0% |
| !! | TTTTGGAAGTGAATCCTGGA+GGG | + | chr1.3:78807895-78807914 | MS.gene029101:CDS | 40.0% |
| !! | TTTTTGGAAGTGAATCCTGG+AGG | + | chr1.3:78807894-78807913 | MS.gene029101:CDS | 40.0% |
| ATACCTCCAGCATGTTAGTG+TGG | - | chr1.3:78808801-78808820 | None:intergenic | 45.0% | |
| ATATCTCCGACAAACCCCAA+TGG | + | chr1.3:78807788-78807807 | MS.gene029101:CDS | 45.0% | |
| CACTTGGTCACTTCAAGAGT+TGG | + | chr1.3:78808903-78808922 | MS.gene029101:CDS | 45.0% | |
| CAGCTGTGAAAACTGCATGA+TGG | + | chr1.3:78809052-78809071 | MS.gene029101:intron | 45.0% | |
| CTTCCATGTACATGTCAAGC+AGG | - | chr1.3:78809846-78809865 | None:intergenic | 45.0% | |
| GGAGAAACAAGAGATGGTTC+AGG | - | chr1.3:78807999-78808018 | None:intergenic | 45.0% | |
| GGAGTATGTCATTGCTGGAT+GGG | + | chr1.3:78810588-78810607 | MS.gene029101:CDS | 45.0% | |
| GTTCCAGTGGTCAAGTTTGA+TGG | + | chr1.3:78807921-78807940 | MS.gene029101:CDS | 45.0% | |
| TAACCACACTAACATGCTGG+AGG | + | chr1.3:78808795-78808814 | MS.gene029101:intron | 45.0% | |
| TACCATCTAGTGGTAGCACT+TGG | + | chr1.3:78808887-78808906 | MS.gene029101:CDS | 45.0% | |
| TGAGCAGGAGAAACAAGAGA+TGG | - | chr1.3:78808005-78808024 | None:intergenic | 45.0% | |
| TGGACCTTTGCCAAATTCTC+AGG | - | chr1.3:78808935-78808954 | None:intergenic | 45.0% | |
| TTGTGGGATGAGGAATCTGA+GGG | + | chr1.3:78808144-78808163 | MS.gene029101:intron | 45.0% | |
| TTTGTGGGATGAGGAATCTG+AGG | + | chr1.3:78808143-78808162 | MS.gene029101:intron | 45.0% | |
| ! | AACAGGGTCCATTTGTTGCT+GGG | + | chr1.3:78808822-78808841 | MS.gene029101:intron | 45.0% |
| ! | AGAGTACCATTGGGGTTTGT+CGG | - | chr1.3:78807797-78807816 | None:intergenic | 45.0% |
| ! | AGGAGTATGTCATTGCTGGA+TGG | + | chr1.3:78810587-78810606 | MS.gene029101:CDS | 45.0% |
| ! | TAACAGGGTCCATTTGTTGC+TGG | + | chr1.3:78808821-78808840 | MS.gene029101:intron | 45.0% |
| !! | TATGGGTTTGCTATGCTTGC+TGG | + | chr1.3:78809379-78809398 | MS.gene029101:intron | 45.0% |
| !! | TGATGGCATTGATTGGTGCT+TGG | + | chr1.3:78809069-78809088 | MS.gene029101:intron | 45.0% |
| !! | TTAAAAATTTAACAAAAATA+AGG | - | chr1.3:78808756-78808775 | None:intergenic | 5.0% |
| ACCTTCTCCCCAGCAACAAA+TGG | - | chr1.3:78808833-78808852 | None:intergenic | 50.0% | |
| GACCAAGTGCTACCACTAGA+TGG | - | chr1.3:78808892-78808911 | None:intergenic | 50.0% | |
| GTACAGTCTCCGAGAACAGT+TGG | - | chr1.3:78807618-78807637 | None:intergenic | 50.0% | |
| TCTCAGAGAGAGAGAGACAG+AGG | - | chr1.3:78807642-78807661 | None:intergenic | 50.0% | |
| ! | ACAGGGTCCATTTGTTGCTG+GGG | + | chr1.3:78808823-78808842 | MS.gene029101:intron | 50.0% |
| ! | CGTGACCTTTCTGAAGAGCA+AGG | + | chr1.3:78808632-78808651 | MS.gene029101:CDS | 50.0% |
| ! | GCAGAGGAGTATGTCATTGC+TGG | + | chr1.3:78810583-78810602 | MS.gene029101:CDS | 50.0% |
| ! | GTTGGTGCTCCAACTGTTCT+CGG | + | chr1.3:78807606-78807625 | MS.gene029101:CDS | 50.0% |
| ! | TCCATTTGTTGCTGGGGAGA+AGG | + | chr1.3:78808829-78808848 | MS.gene029101:CDS | 50.0% |
| AGGGGAAGAAGACACTGCAG+TGG | - | chr1.3:78810152-78810171 | None:intergenic | 55.0% | |
| CATTGCTGGATGGGCACCAA+AGG | + | chr1.3:78810597-78810616 | MS.gene029101:CDS | 55.0% | |
| CGAGAAAACCAAGGCTGCAG+AGG | + | chr1.3:78810567-78810586 | MS.gene029101:CDS | 55.0% | |
| GACATACTCCTCTGCAGCCT+TGG | - | chr1.3:78810578-78810597 | None:intergenic | 55.0% | |
| GAGGAATCTGAGGGAGACTG+TGG | + | chr1.3:78808153-78808172 | MS.gene029101:intron | 55.0% | |
| GGAAGTGAATCCTGGAGGGA+AGG | + | chr1.3:78807899-78807918 | MS.gene029101:CDS | 55.0% | |
| GGCTCTTGAGGTTGCTGTCA+AGG | + | chr1.3:78807578-78807597 | MS.gene029101:CDS | 55.0% | |
| GTTGCTGTCAAGGCTGCTGT+TGG | + | chr1.3:78807588-78807607 | MS.gene029101:CDS | 55.0% | |
| TGTGTACACCTGCACGCACA+AGG | + | chr1.3:78810088-78810107 | MS.gene029101:intron | 55.0% | |
| ACCACTGGAACCTTCCCTCC+AGG | - | chr1.3:78807912-78807931 | None:intergenic | 60.0% | |
| TCCTGGAGGGAAGGTTCCAG+TGG | + | chr1.3:78807908-78807927 | MS.gene029101:CDS | 60.0% | |
| !! | GTTGATGGCCTTGTGCGTGC+AGG | - | chr1.3:78810099-78810118 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 78807576 | 78810630 | 78807576 | ID=MS.gene029101 |
| chr1.3 | mRNA | 78807576 | 78810630 | 78807576 | ID=MS.gene029101.t1;Parent=MS.gene029101 |
| chr1.3 | exon | 78807576 | 78807633 | 78807576 | ID=MS.gene029101.t1.exon1;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78807576 | 78807633 | 78807576 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| chr1.3 | exon | 78807719 | 78807809 | 78807719 | ID=MS.gene029101.t1.exon2;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78807719 | 78807809 | 78807719 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| chr1.3 | exon | 78807893 | 78808036 | 78807893 | ID=MS.gene029101.t1.exon3;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78807893 | 78808036 | 78807893 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| chr1.3 | exon | 78808608 | 78808725 | 78808608 | ID=MS.gene029101.t1.exon4;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78808608 | 78808725 | 78808608 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| chr1.3 | exon | 78808827 | 78808967 | 78808827 | ID=MS.gene029101.t1.exon5;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78808827 | 78808967 | 78808827 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| chr1.3 | exon | 78810544 | 78810630 | 78810544 | ID=MS.gene029101.t1.exon6;Parent=MS.gene029101.t1 |
| chr1.3 | CDS | 78810544 | 78810630 | 78810544 | ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1 |
| Gene Sequence |
| Protein sequence |
