AlfalfaGEDB | MS.gene029101

M. sativa cultivar XinJiangDaYe / MS.gene029101

KEGG: K21888
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13410.9 PF13417.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029101.t1	XP_013470460.1	93.9	212	13	0	1	212	1	212	1.40E-109	405.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029101.t1	Q9FRL8	73.7	213	55	1	1	212	1	213	1.1e-89	330.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029101.t1	I3T9M4	93.9	212	13	0	1	212	1	212	1.0e-109	405.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene029101	MS.gene04939	PPI
MS.gene029101	MS.gene63264	PPI
MS.gene029101	MS.gene008248	PPI
MS.gene029101	MS.gene62289	PPI
MS.gene029101	MS.gene04938	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029101.t1	MTR_1g115500	93.868	212	13	0	1	212	1	212	2.02e-146	406
MS.gene029101.t1	MTR_3g066060	60.096	208	83	0	3	210	55	262	2.29e-93	274

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029101.t1	AT1G75270	73.709	213	55	1	1	212	1	213	5.60e-115	327
MS.gene029101.t1	AT1G19570	74.057	212	54	1	1	211	1	212	6.04e-115	327
MS.gene029101.t1	AT5G16710	60.577	208	82	0	3	210	49	256	3.32e-96	281
MS.gene029101.t1	AT1G19550	55.172	174	51	3	41	211	3	152	3.35e-60	186

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Find 58 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTCCACAACTACATCA+AGG	0.634770	1.3:+78808946	MS.gene029101:CDS
AACAGGGTCCATTTGTTGCT+GGG	0.421851	1.3:+78808822	MS.gene029101:intron
AAGAGAACCCTTTGGGAAAA+TGG	0.223837	1.3:-78807721	None:intergenic
AAGAGCAAGGATTCAAATGA+TGG	0.484327	1.3:+78808645	MS.gene029101:CDS
ACAGGGTCCATTTGTTGCTG+GGG	0.596245	1.3:+78808823	MS.gene029101:intron
ACCAAAACTGTACCATCTAG+TGG	0.659489	1.3:+78808877	MS.gene029101:CDS
ACCACTAGATGGTACAGTTT+TGG	0.363899	1.3:-78808878	None:intergenic
ACCACTGGAACCTTCCCTCC+AGG	0.482366	1.3:-78807909	None:intergenic
ACCTTCTCCCCAGCAACAAA+TGG	0.454458	1.3:-78808830	None:intergenic
AGAGTACCATTGGGGTTTGT+CGG	0.436593	1.3:-78807794	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGTGAAAAATGTAGAAC+CGG	-	chr1.3:78807678-78807697	None:intergenic	30.0%
AATTGTCAACTTCTACAATC+TGG	-	chr1.3:78809940-78809959	None:intergenic	30.0%
ATATATCGAGTTAGACCTTT+AGG	+	chr1.3:78810343-78810362	MS.gene029101:intron	30.0%
ATCTTCAGACTTAAAGTTGA+TGG	-	chr1.3:78810114-78810133	None:intergenic	30.0%
ATTTCAGGGGATCAAATATA+TGG	+	chr1.3:78808601-78808620	MS.gene029101:intron	30.0%
GATATGGATGAAAGATGTAT+GGG	-	chr1.3:78809442-78809461	None:intergenic	30.0%
GATTGTAGAAGTTGACAATT+AGG	+	chr1.3:78809940-78809959	MS.gene029101:intron	30.0%
GCAAACCCATAATTTGATAT+TGG	-	chr1.3:78809370-78809389	None:intergenic	30.0%
TAAAGTCTGAACTTAAAGCT+GGG	+	chr1.3:78809518-78809537	MS.gene029101:intron	30.0%
TACCTAAGAGATTCATTGTA+TGG	-	chr1.3:78810389-78810408	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	78807576	78810630	78807576	ID=MS.gene029101
chr1.3	mRNA	78807576	78810630	78807576	ID=MS.gene029101.t1;Parent=MS.gene029101
chr1.3	exon	78807576	78807633	78807576	ID=MS.gene029101.t1.exon1;Parent=MS.gene029101.t1
chr1.3	CDS	78807576	78807633	78807576	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1
chr1.3	exon	78807719	78807809	78807719	ID=MS.gene029101.t1.exon2;Parent=MS.gene029101.t1
chr1.3	CDS	78807719	78807809	78807719	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1
chr1.3	exon	78807893	78808036	78807893	ID=MS.gene029101.t1.exon3;Parent=MS.gene029101.t1
chr1.3	CDS	78807893	78808036	78807893	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1
chr1.3	exon	78808608	78808725	78808608	ID=MS.gene029101.t1.exon4;Parent=MS.gene029101.t1
chr1.3	CDS	78808608	78808725	78808608	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1
chr1.3	exon	78808827	78808967	78808827	ID=MS.gene029101.t1.exon5;Parent=MS.gene029101.t1
chr1.3	CDS	78808827	78808967	78808827	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1
chr1.3	exon	78810544	78810630	78810544	ID=MS.gene029101.t1.exon6;Parent=MS.gene029101.t1
chr1.3	CDS	78810544	78810630	78810544	ID=cds.MS.gene029101.t1;Parent=MS.gene029101.t1

Gene Sequence

>MS.gene029101

ATGGCTCTTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCTCCAACTGTTCTCGGAGACTGTACGCCTCTGTCTCTCTCTCTCTGAGATTTATTTCTGTTACCGGTTCTACATTTTTCACGATTTTCATTTGTTTTCATTTTCAGGTCCATTTTCCCAAAGGGTTCTCTTAACTTTGGAAGAGAAGAAGATTCCATACAACATCCATTTGATTAATATCTCCGACAAACCCCAATGGTACTCTAAATTCAACTCTATTTTATTTATACTTTCTTTTTTTTTATTTCTTTGAATTTTGTGGCTTATTTATTTATTTGTAGGTTTTTGGAAGTGAATCCTGGAGGGAAGGTTCCAGTGGTCAAGTTTGATGGTAAATGGGTTCCTGATTCTGATGTTATTGTTGGAATTCTTGAAGACAAATACCCTGAACCATCTCTTGTTTCTCCTGCTCAATTTTCCTCAGTGTATGACATCACATCACATCACCCTCTATTTTTATACTTTCAAACTTATGACTATTCCCCATTTGCAAGATGGTATTCAAGATTAACAAAATGTTACTTTCTATATTTTGTGGGATGAGGAATCTGAGGGAGACTGTGGTTATGTCAACTATTAAATTAGTATACATGCTTGTTTTGATTGGCTTATTTCAATTCAACATATCTACTTGCTTAAACACTGTTGAAACTGTTTGAGAGAGCTTATATAAATATCTTATGACAAGTCCCACAAGCCGTTTTCAGCTTATTTTCGTAAGCTCTCCATGATAGCTTATGAAAAGTGAAACACAACTTAGTGTATATGAAAATAATTATATTTTTATAGAAAAAACTTATACATAAACACTTATATGATAAACACATGTGCTTTAAGTTTTTAAATAAGCTGTTTATCCAAACAAAGCTATATTATTGTGGAAAAAGAGTACTCTACTTAAGCCGTGTTTGATTATTAATATAATATTTGAATTGCTATAAGTTGTTTTTCTTCATTGCTTCTGAATTTTGTTGTTCACGATGTTCACAATTTCAGGGGATCAAATATATGGGATACTTTCGTGACCTTTCTGAAGAGCAAGGATTCAAATGATGGAACAGAACAAGCTTTGTTAGCAGAACTCAATGCTTTGGATGAACATCTTAAGGCCAATGTATATATGTGAATTTATTGTCGACAACCTTATTTTTGTTAAATTTTTAACCTGTAATTGATAGCTAATTAACCACACTAACATGCTGGAGGTATTAACAGGGTCCATTTGTTGCTGGGGAGAAGGTCACAGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTAGTGGTAGCACTTGGTCACTTCAAGAGTTGGACTATTCCTGAGAATTTGGCAAAGGTCCACAACTACATCAAGGTACAAAGTTGTTTTCTGTAATGGATGTAATCTTATCTTATGGTTCCCTTTTAGTCATGTCTTTTGCGTTGCCATTGAATTGAACAGCTGTGAAAACTGCATGATGGCATTGATTGGTGCTTGGCAATGAGAACTTTTGGTTGTCTAATTTGTCATGCCAACTGTTTTTTTGTTGTACTTTCTATACCACACTTGAAGTTTCTTCATAATAGCACACAAATTGTTTATTTATCTGCTACTTATAAAAATTTGTAGTCAACATAAAGTGTGTGGAAGGAAAAACACTACAACTCAAGAAGCAAACATAATTGAAAAGACTTTTCTTTGTTTTAAAGCAAAGCTGGACTTATTTATGTCACCAATCTTTCCAGAAGCAAATTGATGTTCACAAAAACATTTCCAATATCAAATTATGGGTTTGCTATGCTTGCTGGTGTCATGAAAAAATTGGTGGTTAAATATTAATTCCTTCCCATACATCTTTCATCCATATCAAAACGATTGAAGTACATGCTTTAAAGATAAAATAAATCTTTTTAGCTTGAATTTTTAAAGTCTGAACTTAAAGCTGGGTTTTAAATCTTACATATTGGATAGAGATTTCTTTTAGGTCTCAATTATGCGTGGCTATTTTAGGGAAGTTTCTCTTTCAAACATTCTGTAATCTGTATTAGACTTAGACTGCCATGTAACATTTTTTTAGCATATTCAAGTGATTAAATTTATCTCTGGATGTCTATATGTTTTATGATTTTGATAGCTTTCCTTCTCTATTTCTTAACTCACCTCCCCTTTTCTCTAAAAAAAAAAATCCACTTTATCCAAAAAAATGAAAAGCATGCTTTTCTTATTTGCCAGGGTTCACTCTTAATTATCCTGCTTGACATGTACATGGAAGTATTGATACTTCAACCCTTACTGATGCTTCATTGAACTTTTTCTTTCTTGTCTTAGCAACAAATATTGTTGCCAGATTGTAGAAGTTGACAATTAGGGTAGTATGTCACGTTCATTCTTTTTAGTTCACATTAACTAGTCATGGACAAATTTTTATGCATGTTCTTCCTGTTGTTTCTTTGATTTATGATTACTGTCTTCTGCTGCTCTGAGCTGTGATTATTGTGTACACCTGCACGCACAAGGCCATCAACTTTAAGTCTGAAGATGTTTTCATACTATTACCACTGCAGTGTCTTCTTCCCCTCCTTTAAATTTCAAAATTTGATTGAGCTATGATTTTCTATGCAACAAATTGTTAGCTTGATCATCACATCATTAGTTAATAGGTTATATAACTTTTGGTGTGATAGTTCATGAAGCTATTTACCACATTGAATCCGTGTAATATATTATTTATCAAATGTGTTGATGCGTTATATATCGAGTTAGACCTTTAGGAGTATTGATGTATTTAAAGTCCATACAATGAATCTCTTAGGTAATTTAGTGCCTTAATTTACAATACCTACAACTAAAGCCTTTTGCATTTGCTGAAAAAAAGATGTAATTGCTTGTTTGAATTGTATTTAATTGTATATGAATTGATTGATTGATGGATAATTATATTATACTGCAGTTGCTCTTCTCTCGTGAATCATTCGAGAAAACCAAGGCTGCAGAGGAGTATGTCATTGCTGGATGGGCACCAAAGGTCAATGCATGA

Protein sequence

>MS.gene029101.t1

MALEVAVKAAVGAPTVLGDCPFSQRVLLTLEEKKIPYNIHLINISDKPQWFLEVNPGGKVPVVKFDGKWVPDSDVIVGILEDKYPEPSLVSPAQFSSVGSNIWDTFVTFLKSKDSNDGTEQALLAELNALDEHLKANGPFVAGEKVTAVDLSLAPKLYHLVVALGHFKSWTIPENLAKVHNYIKLLFSRESFEKTKAAEEYVIAGWAPKVNA