Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75177.t1 | XP_013470460.1 | 93.9 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 1.40E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75177.t1 | Q9FRL8 | 73.7 | 213 | 55 | 1 | 1 | 212 | 1 | 213 | 1.1e-89 | 330.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75177.t1 | I3T9M4 | 93.9 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 1.0e-109 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051860 | MS.gene75177 | 0.816281 | 5.99E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene75177 | 0.803938 | 2.75E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene75177 | 0.809996 | 1.44E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene75177 | -0.818575 | 1.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04938 | MS.gene75177 | PPI |
| MS.gene75177 | MS.gene63264 | PPI |
| MS.gene62289 | MS.gene75177 | PPI |
| MS.gene75177 | MS.gene008248 | PPI |
| MS.gene75177 | MS.gene04939 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75177.t1 | MTR_1g115500 | 93.868 | 212 | 13 | 0 | 1 | 212 | 1 | 212 | 2.02e-146 | 406 |
| MS.gene75177.t1 | MTR_3g066060 | 60.096 | 208 | 83 | 0 | 3 | 210 | 55 | 262 | 2.29e-93 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75177.t1 | AT1G75270 | 73.709 | 213 | 55 | 1 | 1 | 212 | 1 | 213 | 5.60e-115 | 327 |
| MS.gene75177.t1 | AT1G19570 | 74.057 | 212 | 54 | 1 | 1 | 211 | 1 | 212 | 6.04e-115 | 327 |
| MS.gene75177.t1 | AT5G16710 | 60.577 | 208 | 82 | 0 | 3 | 210 | 49 | 256 | 3.32e-96 | 281 |
| MS.gene75177.t1 | AT1G19550 | 55.172 | 174 | 51 | 3 | 41 | 211 | 3 | 152 | 3.35e-60 | 186 |
Find 58 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCAAGTTTGATGGTAAA+TGG | 0.194555 | 1.1:+81338711 | MS.gene75177:CDS |
| TTGGACTATTCCTGAGAATT+TGG | 0.207787 | 1.1:+81339426 | MS.gene75177:CDS |
| AAGAGAACCCTTTGGGAAAA+TGG | 0.223837 | 1.1:-81338504 | None:intergenic |
| ATTTCAGGGGATCAAATATA+TGG | 0.237821 | 1.1:+81339105 | MS.gene75177:intron |
| CACAGCTGTTGATTTGAGTT+TGG | 0.323954 | 1.1:+81339357 | MS.gene75177:CDS |
| CTACTTCATGCATTGACCTT+TGG | 0.348598 | 1.1:-81341117 | None:intergenic |
| CCTGATTCTGATGTTATTGT+TGG | 0.361346 | 1.1:+81338737 | MS.gene75177:CDS |
| TGCTTTGGATGAACATCTTA+AGG | 0.363226 | 1.1:+81339202 | MS.gene75177:CDS |
| ACCACTAGATGGTACAGTTT+TGG | 0.363899 | 1.1:-81339382 | None:intergenic |
| CAAAGTTAAGAGAACCCTTT+GGG | 0.367512 | 1.1:-81338511 | None:intergenic |
| TAACAGGGTCCATTTGTTGC+TGG | 0.379644 | 1.1:+81339325 | MS.gene75177:intron |
| GTTAGCAGAACTCAATGCTT+TGG | 0.381868 | 1.1:+81339187 | MS.gene75177:CDS |
| GTTCCAGTGGTCAAGTTTGA+TGG | 0.383379 | 1.1:+81338704 | MS.gene75177:CDS |
| CCAAAGGGTTCTCTTAACTT+TGG | 0.391179 | 1.1:+81338512 | MS.gene75177:CDS |
| TGGACCTTTGCCAAATTCTC+AGG | 0.406140 | 1.1:-81339436 | None:intergenic |
| AACAGGGTCCATTTGTTGCT+GGG | 0.421851 | 1.1:+81339326 | MS.gene75177:intron |
| GACATACTCCTCTGCAGCCT+TGG | 0.421971 | 1.1:-81341079 | None:intergenic |
| GCAGAGGAGTATGTCATTGC+TGG | 0.422618 | 1.1:+81341087 | MS.gene75177:CDS |
| GGAGAAACAAGAGATGGTTC+AGG | 0.422879 | 1.1:-81338779 | None:intergenic |
| CCAAAGTTAAGAGAACCCTT+TGG | 0.428562 | 1.1:-81338512 | None:intergenic |
| TTAATCAAATGGATGTTGTA+TGG | 0.432983 | 1.1:-81338549 | None:intergenic |
| AGAGTACCATTGGGGTTTGT+CGG | 0.436593 | 1.1:-81338577 | None:intergenic |
| TGTCGGAGATATTAATCAAA+TGG | 0.447813 | 1.1:-81338560 | None:intergenic |
| ACCTTCTCCCCAGCAACAAA+TGG | 0.454458 | 1.1:-81339334 | None:intergenic |
| GTTGGTGCTCCAACTGTTCT+CGG | 0.458021 | 1.1:+81338391 | MS.gene75177:CDS |
| GGTCAAGTTTGATGGTAAAT+GGG | 0.460396 | 1.1:+81338712 | MS.gene75177:CDS |
| TGAATCCTTGCTCTTCAGAA+AGG | 0.466931 | 1.1:-81339141 | None:intergenic |
| CCAACAATAACATCAGAATC+AGG | 0.477453 | 1.1:-81338737 | None:intergenic |
| GGCTCTTGAGGTTGCTGTCA+AGG | 0.478726 | 1.1:+81338363 | MS.gene75177:CDS |
| ACCACTGGAACCTTCCCTCC+AGG | 0.482366 | 1.1:-81338692 | None:intergenic |
| AAGAGCAAGGATTCAAATGA+TGG | 0.484327 | 1.1:+81339149 | MS.gene75177:CDS |
| TCCATTTGTTGCTGGGGAGA+AGG | 0.485126 | 1.1:+81339333 | MS.gene75177:CDS |
| GACCAAGTGCTACCACTAGA+TGG | 0.490749 | 1.1:-81339393 | None:intergenic |
| CGTGACCTTTCTGAAGAGCA+AGG | 0.493675 | 1.1:+81339136 | MS.gene75177:CDS |
| TTACCATCAAACTTGACCAC+TGG | 0.501479 | 1.1:-81338707 | None:intergenic |
| GTTGCTGTCAAGGCTGCTGT+TGG | 0.509413 | 1.1:+81338373 | MS.gene75177:CDS |
| CACTTGGTCACTTCAAGAGT+TGG | 0.517047 | 1.1:+81339407 | MS.gene75177:CDS |
| TTTCAGGGGATCAAATATAT+GGG | 0.518607 | 1.1:+81339106 | MS.gene75177:intron |
| TACACTGAGGAAAATTGAGC+AGG | 0.548119 | 1.1:-81338800 | None:intergenic |
| AGGAGTATGTCATTGCTGGA+TGG | 0.548576 | 1.1:+81341091 | MS.gene75177:CDS |
| CATTGCTGGATGGGCACCAA+AGG | 0.555766 | 1.1:+81341101 | MS.gene75177:CDS |
| ATCATCGCAAATGGCTCTTG+AGG | 0.559050 | 1.1:+81338351 | None:intergenic |
| GGAAGTGAATCCTGGAGGGA+AGG | 0.560932 | 1.1:+81338682 | MS.gene75177:CDS |
| GAGAAACAAGAGATGGTTCA+GGG | 0.568330 | 1.1:-81338778 | None:intergenic |
| GGAGTATGTCATTGCTGGAT+GGG | 0.575558 | 1.1:+81341092 | MS.gene75177:CDS |
| CGAGAAAACCAAGGCTGCAG+AGG | 0.575652 | 1.1:+81341071 | MS.gene75177:CDS |
| ACAGGGTCCATTTGTTGCTG+GGG | 0.596245 | 1.1:+81339327 | MS.gene75177:intron |
| TACCATCTAGTGGTAGCACT+TGG | 0.606458 | 1.1:+81339391 | MS.gene75177:CDS |
| TCCTGGAGGGAAGGTTCCAG+TGG | 0.613379 | 1.1:+81338691 | MS.gene75177:CDS |
| TATTCCTGAGAATTTGGCAA+AGG | 0.623001 | 1.1:+81339432 | MS.gene75177:CDS |
| GTACAGTCTCCGAGAACAGT+TGG | 0.629766 | 1.1:-81338400 | None:intergenic |
| TTTGTACCTTGATGTAGTTG+TGG | 0.632536 | 1.1:-81339456 | None:intergenic |
| AAAGGTCCACAACTACATCA+AGG | 0.634770 | 1.1:+81339450 | MS.gene75177:CDS |
| TGAGCAGGAGAAACAAGAGA+TGG | 0.641215 | 1.1:-81338785 | None:intergenic |
| TTGAATTTAGAGTACCATTG+GGG | 0.655225 | 1.1:-81338585 | None:intergenic |
| ACCAAAACTGTACCATCTAG+TGG | 0.659489 | 1.1:+81339381 | MS.gene75177:CDS |
| ATATCTCCGACAAACCCCAA+TGG | 0.672245 | 1.1:+81338571 | MS.gene75177:CDS |
| TGAATCATTCGAGAAAACCA+AGG | 0.685046 | 1.1:+81341062 | MS.gene75177:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAATAATATATTACA+CGG | - | chr1.1:81340812-81340831 | None:intergenic | 10.0% |
| !!! | AATCAAATTTTGAAATTTAA+AGG | - | chr1.1:81340679-81340698 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTAGAGAAAA+GGG | - | chr1.1:81340264-81340283 | None:intergenic | 10.0% |
| !! | ATAAATTCACATATATACAT+TGG | - | chr1.1:81339228-81339247 | None:intergenic | 15.0% |
| !!! | AAATTTTGAAATTTAAAGGA+GGG | - | chr1.1:81340675-81340694 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAGAGAAA+AGG | - | chr1.1:81340265-81340284 | None:intergenic | 15.0% |
| !!! | TTAATAGGTTATATAACTTT+TGG | + | chr1.1:81340751-81340770 | MS.gene75177:intron | 15.0% |
| !!! | TTTATTTATTTGTAGGTTTT+TGG | + | chr1.1:81338661-81338680 | MS.gene75177:intron | 15.0% |
| !!! | TTTGAAAGTATAAAAATAGA+GGG | - | chr1.1:81338844-81338863 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTAGAGAAAAG+GGG | - | chr1.1:81340263-81340282 | None:intergenic | 15.0% |
| !! | ACATTTCCAATATCAAATTA+TGG | + | chr1.1:81339865-81339884 | MS.gene75177:intron | 20.0% |
| !! | CATTTCCAATATCAAATTAT+GGG | + | chr1.1:81339866-81339885 | MS.gene75177:intron | 20.0% |
| !! | TATATGAATTGATTGATTGA+TGG | + | chr1.1:81341005-81341024 | MS.gene75177:intron | 20.0% |
| !! | TATGCTAAAAAAATGTTACA+TGG | - | chr1.1:81340159-81340178 | None:intergenic | 20.0% |
| !!! | AATTTTGAAATTTAAAGGAG+GGG | - | chr1.1:81340674-81340693 | None:intergenic | 20.0% |
| !!! | ATGTTACTTTCTATATTTTG+TGG | + | chr1.1:81338910-81338929 | MS.gene75177:intron | 20.0% |
| !!! | CAAATTTTGAAATTTAAAGG+AGG | - | chr1.1:81340676-81340695 | None:intergenic | 20.0% |
| !!! | GTTTGAAAGTATAAAAATAG+AGG | - | chr1.1:81338845-81338864 | None:intergenic | 20.0% |
| !!! | TGTTACTTTCTATATTTTGT+GGG | + | chr1.1:81338911-81338930 | MS.gene75177:intron | 20.0% |
| !!! | TTTCATTTGTTTTCATTTTC+AGG | + | chr1.1:81338480-81338499 | MS.gene75177:intron | 20.0% |
| !!! | TTTCATTTTTTTGGATAAAG+TGG | - | chr1.1:81340287-81340306 | None:intergenic | 20.0% |
| ! | AAATACATCAATACTCCTAA+AGG | - | chr1.1:81340865-81340884 | None:intergenic | 25.0% |
| ! | AAGTACAACAAAAAAACAGT+TGG | - | chr1.1:81339632-81339651 | None:intergenic | 25.0% |
| ! | ATGGATGTAATCTTATCTTA+TGG | + | chr1.1:81339492-81339511 | MS.gene75177:intron | 25.0% |
| ! | ATTGTAGAAGTTGACAATTA+GGG | + | chr1.1:81340445-81340464 | MS.gene75177:intron | 25.0% |
| ! | CAAGTGATTAAATTTATCTC+TGG | + | chr1.1:81340181-81340200 | MS.gene75177:intron | 25.0% |
| ! | GTTAATTAGCTATCAATTAC+AGG | - | chr1.1:81339283-81339302 | None:intergenic | 25.0% |
| ! | TCATAAATCAAAGAAACAAC+AGG | - | chr1.1:81340539-81340558 | None:intergenic | 25.0% |
| ! | TCATCACATCATTAGTTAAT+AGG | + | chr1.1:81340736-81340755 | MS.gene75177:intron | 25.0% |
| ! | TTAATCAAATGGATGTTGTA+TGG | - | chr1.1:81338552-81338571 | None:intergenic | 25.0% |
| !! | ATTGGATAGAGATTTCTTTT+AGG | + | chr1.1:81340060-81340079 | MS.gene75177:intron | 25.0% |
| !! | GTTGTAGGTATTGTAAATTA+AGG | - | chr1.1:81340924-81340943 | None:intergenic | 25.0% |
| !!! | AAGCATGCTTTTCATTTTTT+TGG | - | chr1.1:81340296-81340315 | None:intergenic | 25.0% |
| !!! | GGGTTTTAAATCTTACATAT+TGG | + | chr1.1:81340042-81340061 | MS.gene75177:intron | 25.0% |
| !!! | TACAAAGTTGTTTTCTGTAA+TGG | + | chr1.1:81339473-81339492 | MS.gene75177:intron | 25.0% |
| !!! | TTTTTTTCAGCAAATGCAAA+AGG | - | chr1.1:81340952-81340971 | None:intergenic | 25.0% |
| AATCGTGAAAAATGTAGAAC+CGG | - | chr1.1:81338461-81338480 | None:intergenic | 30.0% | |
| AATTGTCAACTTCTACAATC+TGG | - | chr1.1:81340444-81340463 | None:intergenic | 30.0% | |
| ATATATCGAGTTAGACCTTT+AGG | + | chr1.1:81340847-81340866 | MS.gene75177:intron | 30.0% | |
| ATCTTCAGACTTAAAGTTGA+TGG | - | chr1.1:81340618-81340637 | None:intergenic | 30.0% | |
| ATTTCAGGGGATCAAATATA+TGG | + | chr1.1:81339105-81339124 | MS.gene75177:intron | 30.0% | |
| GATATGGATGAAAGATGTAT+GGG | - | chr1.1:81339946-81339965 | None:intergenic | 30.0% | |
| GATTGTAGAAGTTGACAATT+AGG | + | chr1.1:81340444-81340463 | MS.gene75177:intron | 30.0% | |
| GCAAACCCATAATTTGATAT+TGG | - | chr1.1:81339874-81339893 | None:intergenic | 30.0% | |
| TAAAGTCTGAACTTAAAGCT+GGG | + | chr1.1:81340022-81340041 | MS.gene75177:intron | 30.0% | |
| TACCTAAGAGATTCATTGTA+TGG | - | chr1.1:81340893-81340912 | None:intergenic | 30.0% | |
| TAGTTCACATTAACTAGTCA+TGG | + | chr1.1:81340491-81340510 | MS.gene75177:intron | 30.0% | |
| TATATTACACGGATTCAATG+TGG | - | chr1.1:81340801-81340820 | None:intergenic | 30.0% | |
| TGATATGGATGAAAGATGTA+TGG | - | chr1.1:81339947-81339966 | None:intergenic | 30.0% | |
| TGTCGGAGATATTAATCAAA+TGG | - | chr1.1:81338563-81338582 | None:intergenic | 30.0% | |
| TTAAAGTCTGAACTTAAAGC+TGG | + | chr1.1:81340021-81340040 | MS.gene75177:intron | 30.0% | |
| TTATGAAGAAACTTCAAGTG+TGG | - | chr1.1:81339661-81339680 | None:intergenic | 30.0% | |
| TTGAATACCATCTTGCAAAT+GGG | - | chr1.1:81338880-81338899 | None:intergenic | 30.0% | |
| TTTCAGGGGATCAAATATAT+GGG | + | chr1.1:81339106-81339125 | MS.gene75177:intron | 30.0% | |
| ! | AGTTGAATTTAGAGTACCAT+TGG | - | chr1.1:81338590-81338609 | None:intergenic | 30.0% |
| ! | GTTGAATTTAGAGTACCATT+GGG | - | chr1.1:81338589-81338608 | None:intergenic | 30.0% |
| ! | TTGAATTTAGAGTACCATTG+GGG | - | chr1.1:81338588-81338607 | None:intergenic | 30.0% |
| ! | TTTCTATATTTTGTGGGATG+AGG | + | chr1.1:81338917-81338936 | MS.gene75177:intron | 30.0% |
| !! | AATTATGCGTGGCTATTTTA+GGG | + | chr1.1:81340087-81340106 | MS.gene75177:intron | 30.0% |
| !! | CTGAGATTTATTTCTGTTAC+CGG | + | chr1.1:81338439-81338458 | MS.gene75177:intron | 30.0% |
| !! | GTACTTCAATCGTTTTGATA+TGG | - | chr1.1:81339962-81339981 | None:intergenic | 30.0% |
| !!! | GTATACATGCTTGTTTTGAT+TGG | + | chr1.1:81338979-81338998 | MS.gene75177:intron | 30.0% |
| !!! | TCTTTGTTTTAAAGCAAAGC+TGG | + | chr1.1:81339793-81339812 | MS.gene75177:intron | 30.0% |
| !!! | TTTTTTTTAGAGAAAAGGGG+AGG | - | chr1.1:81340260-81340279 | None:intergenic | 30.0% |
| AAGAGCAAGGATTCAAATGA+TGG | + | chr1.1:81339149-81339168 | MS.gene75177:CDS | 35.0% | |
| AATTAACCACACTAACATGC+TGG | + | chr1.1:81339296-81339315 | MS.gene75177:intron | 35.0% | |
| ACGCAAAAGACATGACTAAA+AGG | - | chr1.1:81339521-81339540 | None:intergenic | 35.0% | |
| CAAAGTTAAGAGAACCCTTT+GGG | - | chr1.1:81338514-81338533 | None:intergenic | 35.0% | |
| CCAACAATAACATCAGAATC+AGG | - | chr1.1:81338740-81338759 | None:intergenic | 35.0% | |
| CCTGATTCTGATGTTATTGT+TGG | + | chr1.1:81338737-81338756 | MS.gene75177:CDS | 35.0% | |
| CGCAAAAGACATGACTAAAA+GGG | - | chr1.1:81339520-81339539 | None:intergenic | 35.0% | |
| CTTGAATACCATCTTGCAAA+TGG | - | chr1.1:81338881-81338900 | None:intergenic | 35.0% | |
| GGTGAGTTAAGAAATAGAGA+AGG | - | chr1.1:81340239-81340258 | None:intergenic | 35.0% | |
| GTCCATACAATGAATCTCTT+AGG | + | chr1.1:81340888-81340907 | MS.gene75177:intron | 35.0% | |
| TATTCCTGAGAATTTGGCAA+AGG | + | chr1.1:81339432-81339451 | MS.gene75177:CDS | 35.0% | |
| TCACGATGTTCACAATTTCA+GGG | + | chr1.1:81339091-81339110 | MS.gene75177:intron | 35.0% | |
| TGAATACCATCTTGCAAATG+GGG | - | chr1.1:81338879-81338898 | None:intergenic | 35.0% | |
| TGAATCATTCGAGAAAACCA+AGG | + | chr1.1:81341062-81341081 | MS.gene75177:CDS | 35.0% | |
| TGTAGTCAACATAAAGTGTG+TGG | + | chr1.1:81339722-81339741 | MS.gene75177:intron | 35.0% | |
| TTCACAGCTGTTCAATTCAA+TGG | - | chr1.1:81339546-81339565 | None:intergenic | 35.0% | |
| TTCACGATGTTCACAATTTC+AGG | + | chr1.1:81339090-81339109 | MS.gene75177:intron | 35.0% | |
| TTGGACTATTCCTGAGAATT+TGG | + | chr1.1:81339426-81339445 | MS.gene75177:CDS | 35.0% | |
| TTTGTACCTTGATGTAGTTG+TGG | - | chr1.1:81339459-81339478 | None:intergenic | 35.0% | |
| ! | AGTTCAATGAAGCATCAGTA+AGG | - | chr1.1:81340388-81340407 | None:intergenic | 35.0% |
| ! | ATGCAAAAGGCTTTAGTTGT+AGG | - | chr1.1:81340939-81340958 | None:intergenic | 35.0% |
| ! | CAATTTGCTTCTGGAAAGAT+TGG | - | chr1.1:81339833-81339852 | None:intergenic | 35.0% |
| ! | GGTCAAGTTTGATGGTAAAT+GGG | + | chr1.1:81338712-81338731 | MS.gene75177:CDS | 35.0% |
| ! | GTTCAATGAAGCATCAGTAA+GGG | - | chr1.1:81340387-81340406 | None:intergenic | 35.0% |
| ! | TGCTTTGGATGAACATCTTA+AGG | + | chr1.1:81339202-81339221 | MS.gene75177:CDS | 35.0% |
| ! | TGGTCAAGTTTGATGGTAAA+TGG | + | chr1.1:81338711-81338730 | MS.gene75177:CDS | 35.0% |
| ! | TGTGAACATCAATTTGCTTC+TGG | - | chr1.1:81339842-81339861 | None:intergenic | 35.0% |
| !! | CAATTATGCGTGGCTATTTT+AGG | + | chr1.1:81340086-81340105 | MS.gene75177:intron | 35.0% |
| !! | CATGCTTTTCTTATTTGCCA+GGG | + | chr1.1:81340309-81340328 | MS.gene75177:intron | 35.0% |
| !! | TGCTGGTGTCATGAAAAAAT+TGG | + | chr1.1:81339900-81339919 | MS.gene75177:intron | 35.0% |
| !! | TGGTGTCATGAAAAAATTGG+TGG | + | chr1.1:81339903-81339922 | MS.gene75177:intron | 35.0% |
| !! | TTTTAGGTCTCAATTATGCG+TGG | + | chr1.1:81340076-81340095 | MS.gene75177:intron | 35.0% |
| AAAGGTCCACAACTACATCA+AGG | + | chr1.1:81339450-81339469 | MS.gene75177:CDS | 40.0% | |
| ACCAAAACTGTACCATCTAG+TGG | + | chr1.1:81339381-81339400 | MS.gene75177:CDS | 40.0% | |
| ACTATTCCCCATTTGCAAGA+TGG | + | chr1.1:81338870-81338889 | MS.gene75177:intron | 40.0% | |
| CACGATGTTCACAATTTCAG+GGG | + | chr1.1:81339092-81339111 | MS.gene75177:intron | 40.0% | |
| CCAAAGGGTTCTCTTAACTT+TGG | + | chr1.1:81338512-81338531 | MS.gene75177:CDS | 40.0% | |
| CCAAAGTTAAGAGAACCCTT+TGG | - | chr1.1:81338515-81338534 | None:intergenic | 40.0% | |
| GAGAAACAAGAGATGGTTCA+GGG | - | chr1.1:81338781-81338800 | None:intergenic | 40.0% | |
| GGATAATTAAGAGTGAACCC+TGG | - | chr1.1:81340329-81340348 | None:intergenic | 40.0% | |
| GTCAACATAAAGTGTGTGGA+AGG | + | chr1.1:81339726-81339745 | MS.gene75177:intron | 40.0% | |
| GTTAGCAGAACTCAATGCTT+TGG | + | chr1.1:81339187-81339206 | MS.gene75177:CDS | 40.0% | |
| TACACTGAGGAAAATTGAGC+AGG | - | chr1.1:81338803-81338822 | None:intergenic | 40.0% | |
| TATCCTGCTTGACATGTACA+TGG | + | chr1.1:81340344-81340363 | MS.gene75177:intron | 40.0% | |
| TGAATCCTTGCTCTTCAGAA+AGG | - | chr1.1:81339144-81339163 | None:intergenic | 40.0% | |
| TGATGTGATGTCATACACTG+AGG | - | chr1.1:81338816-81338835 | None:intergenic | 40.0% | |
| TGGATGAAAGATGTATGGGA+AGG | - | chr1.1:81339942-81339961 | None:intergenic | 40.0% | |
| TTACCATCAAACTTGACCAC+TGG | - | chr1.1:81338710-81338729 | None:intergenic | 40.0% | |
| ! | AAGAGAACCCTTTGGGAAAA+TGG | - | chr1.1:81338507-81338526 | None:intergenic | 40.0% |
| ! | ACCACTAGATGGTACAGTTT+TGG | - | chr1.1:81339385-81339404 | None:intergenic | 40.0% |
| ! | TGCTTGGCAATGAGAACTTT+TGG | + | chr1.1:81339589-81339608 | MS.gene75177:intron | 40.0% |
| ! | TTCAGGTCCATTTTCCCAAA+GGG | + | chr1.1:81338497-81338516 | MS.gene75177:intron | 40.0% |
| !! | AACATGCTGGAGGTATTAAC+AGG | + | chr1.1:81339309-81339328 | MS.gene75177:intron | 40.0% |
| !! | AACTGCATGATGGCATTGAT+TGG | + | chr1.1:81339566-81339585 | MS.gene75177:intron | 40.0% |
| !! | ACATGCTGGAGGTATTAACA+GGG | + | chr1.1:81339310-81339329 | MS.gene75177:intron | 40.0% |
| !! | AGGTTTTTGGAAGTGAATCC+TGG | + | chr1.1:81338674-81338693 | MS.gene75177:intron | 40.0% |
| !! | CACAGCTGTTGATTTGAGTT+TGG | + | chr1.1:81339357-81339376 | MS.gene75177:CDS | 40.0% |
| !! | GCATGCTTTTCTTATTTGCC+AGG | + | chr1.1:81340308-81340327 | MS.gene75177:intron | 40.0% |
| !! | TTTCAGGTCCATTTTCCCAA+AGG | + | chr1.1:81338496-81338515 | MS.gene75177:intron | 40.0% |
| !! | TTTTGGAAGTGAATCCTGGA+GGG | + | chr1.1:81338678-81338697 | MS.gene75177:CDS | 40.0% |
| !! | TTTTTGGAAGTGAATCCTGG+AGG | + | chr1.1:81338677-81338696 | MS.gene75177:CDS | 40.0% |
| AATCTCAGAGAGAGAGAGAG+AGG | - | chr1.1:81338427-81338446 | None:intergenic | 45.0% | |
| ATACCTCCAGCATGTTAGTG+TGG | - | chr1.1:81339305-81339324 | None:intergenic | 45.0% | |
| ATATCTCCGACAAACCCCAA+TGG | + | chr1.1:81338571-81338590 | MS.gene75177:CDS | 45.0% | |
| CACTTGGTCACTTCAAGAGT+TGG | + | chr1.1:81339407-81339426 | MS.gene75177:CDS | 45.0% | |
| CAGCTGTGAAAACTGCATGA+TGG | + | chr1.1:81339556-81339575 | MS.gene75177:intron | 45.0% | |
| CTTCCATGTACATGTCAAGC+AGG | - | chr1.1:81340350-81340369 | None:intergenic | 45.0% | |
| GGAGAAACAAGAGATGGTTC+AGG | - | chr1.1:81338782-81338801 | None:intergenic | 45.0% | |
| GGAGTATGTCATTGCTGGAT+GGG | + | chr1.1:81341092-81341111 | MS.gene75177:CDS | 45.0% | |
| GTTCCAGTGGTCAAGTTTGA+TGG | + | chr1.1:81338704-81338723 | MS.gene75177:CDS | 45.0% | |
| TAACCACACTAACATGCTGG+AGG | + | chr1.1:81339299-81339318 | MS.gene75177:intron | 45.0% | |
| TACCATCTAGTGGTAGCACT+TGG | + | chr1.1:81339391-81339410 | MS.gene75177:CDS | 45.0% | |
| TGAGCAGGAGAAACAAGAGA+TGG | - | chr1.1:81338788-81338807 | None:intergenic | 45.0% | |
| TGGACCTTTGCCAAATTCTC+AGG | - | chr1.1:81339439-81339458 | None:intergenic | 45.0% | |
| TTGTGGGATGAGGAATCTGA+GGG | + | chr1.1:81338927-81338946 | MS.gene75177:intron | 45.0% | |
| TTTGTGGGATGAGGAATCTG+AGG | + | chr1.1:81338926-81338945 | MS.gene75177:intron | 45.0% | |
| ! | AACAGGGTCCATTTGTTGCT+GGG | + | chr1.1:81339326-81339345 | MS.gene75177:intron | 45.0% |
| ! | AGAGTACCATTGGGGTTTGT+CGG | - | chr1.1:81338580-81338599 | None:intergenic | 45.0% |
| ! | AGGAGTATGTCATTGCTGGA+TGG | + | chr1.1:81341091-81341110 | MS.gene75177:CDS | 45.0% |
| ! | TAACAGGGTCCATTTGTTGC+TGG | + | chr1.1:81339325-81339344 | MS.gene75177:intron | 45.0% |
| !! | TATGGGTTTGCTATGCTTGC+TGG | + | chr1.1:81339883-81339902 | MS.gene75177:intron | 45.0% |
| !! | TGATGGCATTGATTGGTGCT+TGG | + | chr1.1:81339573-81339592 | MS.gene75177:intron | 45.0% |
| !! | TTAAAAATTTAACAAAAATA+AGG | - | chr1.1:81339260-81339279 | None:intergenic | 5.0% |
| !! | TTATTTATTTATTTATTTGT+AGG | + | chr1.1:81338654-81338673 | MS.gene75177:intron | 5.0% |
| ACCTTCTCCCCAGCAACAAA+TGG | - | chr1.1:81339337-81339356 | None:intergenic | 50.0% | |
| GACCAAGTGCTACCACTAGA+TGG | - | chr1.1:81339396-81339415 | None:intergenic | 50.0% | |
| GTACAGTCTCCGAGAACAGT+TGG | - | chr1.1:81338403-81338422 | None:intergenic | 50.0% | |
| ! | ACAGGGTCCATTTGTTGCTG+GGG | + | chr1.1:81339327-81339346 | MS.gene75177:intron | 50.0% |
| ! | CGTGACCTTTCTGAAGAGCA+AGG | + | chr1.1:81339136-81339155 | MS.gene75177:CDS | 50.0% |
| ! | GCAGAGGAGTATGTCATTGC+TGG | + | chr1.1:81341087-81341106 | MS.gene75177:CDS | 50.0% |
| ! | GTTGGTGCTCCAACTGTTCT+CGG | + | chr1.1:81338391-81338410 | MS.gene75177:CDS | 50.0% |
| ! | TCCATTTGTTGCTGGGGAGA+AGG | + | chr1.1:81339333-81339352 | MS.gene75177:CDS | 50.0% |
| AGGGGAAGAAGACACTGCAG+TGG | - | chr1.1:81340656-81340675 | None:intergenic | 55.0% | |
| CATTGCTGGATGGGCACCAA+AGG | + | chr1.1:81341101-81341120 | MS.gene75177:CDS | 55.0% | |
| CGAGAAAACCAAGGCTGCAG+AGG | + | chr1.1:81341071-81341090 | MS.gene75177:CDS | 55.0% | |
| GACATACTCCTCTGCAGCCT+TGG | - | chr1.1:81341082-81341101 | None:intergenic | 55.0% | |
| GAGGAATCTGAGGGAGACTG+TGG | + | chr1.1:81338936-81338955 | MS.gene75177:intron | 55.0% | |
| GGAAGTGAATCCTGGAGGGA+AGG | + | chr1.1:81338682-81338701 | MS.gene75177:CDS | 55.0% | |
| GGCTCTTGAGGTTGCTGTCA+AGG | + | chr1.1:81338363-81338382 | MS.gene75177:CDS | 55.0% | |
| GTTGCTGTCAAGGCTGCTGT+TGG | + | chr1.1:81338373-81338392 | MS.gene75177:CDS | 55.0% | |
| TGTGTACACCTGCACGCACA+AGG | + | chr1.1:81340592-81340611 | MS.gene75177:intron | 55.0% | |
| ACCACTGGAACCTTCCCTCC+AGG | - | chr1.1:81338695-81338714 | None:intergenic | 60.0% | |
| TCCTGGAGGGAAGGTTCCAG+TGG | + | chr1.1:81338691-81338710 | MS.gene75177:CDS | 60.0% | |
| !! | GTTGATGGCCTTGTGCGTGC+AGG | - | chr1.1:81340603-81340622 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 81338361 | 81341134 | 81338361 | ID=MS.gene75177 |
| chr1.1 | mRNA | 81338361 | 81341134 | 81338361 | ID=MS.gene75177.t1;Parent=MS.gene75177 |
| chr1.1 | exon | 81338361 | 81338418 | 81338361 | ID=MS.gene75177.t1.exon1;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81338361 | 81338418 | 81338361 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| chr1.1 | exon | 81338502 | 81338592 | 81338502 | ID=MS.gene75177.t1.exon2;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81338502 | 81338592 | 81338502 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| chr1.1 | exon | 81338676 | 81338819 | 81338676 | ID=MS.gene75177.t1.exon3;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81338676 | 81338819 | 81338676 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| chr1.1 | exon | 81339112 | 81339229 | 81339112 | ID=MS.gene75177.t1.exon4;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81339112 | 81339229 | 81339112 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| chr1.1 | exon | 81339331 | 81339471 | 81339331 | ID=MS.gene75177.t1.exon5;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81339331 | 81339471 | 81339331 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| chr1.1 | exon | 81341048 | 81341134 | 81341048 | ID=MS.gene75177.t1.exon6;Parent=MS.gene75177.t1 |
| chr1.1 | CDS | 81341048 | 81341134 | 81341048 | ID=cds.MS.gene75177.t1;Parent=MS.gene75177.t1 |
| Gene Sequence |
| Protein sequence |
