Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008363.t1 | XP_003600605.1 | 83.8 | 525 | 7 | 1 | 1 | 447 | 1 | 525 | 2.50E-225 | 791.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008363.t1 | O62703 | 36.3 | 479 | 215 | 9 | 53 | 444 | 85 | 560 | 2.4e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008363.t1 | G7J7W2 | 83.8 | 525 | 7 | 1 | 1 | 447 | 1 | 525 | 1.8e-225 | 791.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008363 | MS.gene47154 | PPI |
| MS.gene008363 | MS.gene074082 | PPI |
| MS.gene008363 | MS.gene55513 | PPI |
| MS.gene008363 | MS.gene74436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008363.t1 | MTR_3g064180 | 72.952 | 525 | 64 | 7 | 1 | 447 | 1 | 525 | 0.0 | 696 |
| MS.gene008363.t1 | MTR_8g023320 | 94.783 | 115 | 6 | 0 | 84 | 198 | 42 | 156 | 1.99e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008363.t1 | AT3G02710 | 54.064 | 529 | 161 | 9 | 1 | 447 | 1 | 529 | 4.84e-171 | 491 |
Find 100 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTAGTTGCTTCATTATT+TGG | 0.121094 | 3.1:+53630952 | MS.gene008363:CDS |
| TCAGTTGGTTGCTGTCATTT+TGG | 0.177787 | 3.1:+53632194 | MS.gene008363:intron |
| GCAGTATGCGTCGGAGATTT+TGG | 0.220138 | 3.1:+53630366 | MS.gene008363:CDS |
| AAAGATTCAGAAGTTCTTAA+TGG | 0.254674 | 3.1:+53632622 | MS.gene008363:CDS |
| TGATGTTGTTACGTTGATTC+AGG | 0.256713 | 3.1:+53630066 | MS.gene008363:CDS |
| GTGGCTGTTGGGGAAGATTA+AGG | 0.265756 | 3.1:+53630321 | MS.gene008363:CDS |
| TAAGCTTGTGAAGCTCTTCA+TGG | 0.319731 | 3.1:-53629940 | None:intergenic |
| ATCTGGACTTTATACTCTTC+AGG | 0.322599 | 3.1:+53631875 | MS.gene008363:CDS |
| GCGAATCGTTCGGGTTGATT+AGG | 0.325409 | 3.1:-53629899 | None:intergenic |
| TAGGAATATCATGACAATAT+TGG | 0.328004 | 3.1:+53632560 | MS.gene008363:intron |
| CTCTTCCTCATCCGAACTCT+TGG | 0.328264 | 3.1:-53630491 | None:intergenic |
| TGTGCTCGCTCCTTCTCTTC+TGG | 0.344836 | 3.1:-53632596 | None:intergenic |
| CACAAGCTTAAAGTTCTTGC+TGG | 0.345339 | 3.1:+53629953 | MS.gene008363:CDS |
| GACAATATTGGCGATCTTGA+TGG | 0.349058 | 3.1:+53632572 | MS.gene008363:CDS |
| TCGGAATCCGCGAATCGTTC+GGG | 0.352290 | 3.1:-53629908 | None:intergenic |
| TACGGCGAATCAGAAGAAAT+TGG | 0.359095 | 3.1:+53630408 | MS.gene008363:CDS |
| GGATGAGCGGTTGCGGGTGG+TGG | 0.364644 | 3.1:-53629699 | None:intergenic |
| GACGGCGTCGATTGTGGGTT+GGG | 0.368993 | 3.1:-53629798 | None:intergenic |
| TACAATCGTAAACTAGAATC+TGG | 0.374374 | 3.1:+53631858 | MS.gene008363:CDS |
| TTCGGAATCCGCGAATCGTT+CGG | 0.376786 | 3.1:-53629909 | None:intergenic |
| TGAGCGGTTGCGGGTGGTGG+TGG | 0.378306 | 3.1:-53629696 | None:intergenic |
| TTGTCGACGGCGTCGATTGT+GGG | 0.383086 | 3.1:-53629803 | None:intergenic |
| ACGGCGAATCAGAAGAAATT+GGG | 0.402285 | 3.1:+53630409 | MS.gene008363:CDS |
| GCGTTTGGATGAGCGGTTGC+GGG | 0.408371 | 3.1:-53629705 | None:intergenic |
| TGGGGTGGATGTGATGCTTC+AGG | 0.413573 | 3.1:+53630441 | MS.gene008363:CDS |
| TGGAGCACCGGAACTTTATC+CGG | 0.419974 | 3.1:+53629973 | MS.gene008363:CDS |
| ACGATTCGCGGATTCCGAAT+TGG | 0.425378 | 3.1:+53629913 | MS.gene008363:CDS |
| AAGAAATTGGGGCAAATGAA+TGG | 0.426921 | 3.1:+53630421 | MS.gene008363:CDS |
| GCATGTCAAGGATATACTTC+AGG | 0.429337 | 3.1:+53632389 | MS.gene008363:CDS |
| CGGTTGCGGGTGGTGGTGGA+TGG | 0.435184 | 3.1:-53629692 | None:intergenic |
| ACGAGTGCGAGAAGATAGAT+AGG | 0.440196 | 3.1:+53631461 | MS.gene008363:CDS |
| GCAGAATTTGCATCGGTTGT+CGG | 0.443160 | 3.1:+53630183 | MS.gene008363:CDS |
| GGATGTGATGCTTCAGGCGG+TGG | 0.444743 | 3.1:+53630447 | MS.gene008363:CDS |
| TAATCAACCCGAACGATTCG+CGG | 0.445441 | 3.1:+53629901 | MS.gene008363:CDS |
| CGACGGCGTCGATTGTGGGT+TGG | 0.448251 | 3.1:-53629799 | None:intergenic |
| CTCTTCATGGAGCTCCAATT+CGG | 0.450268 | 3.1:-53629927 | None:intergenic |
| TGTTGGGGAAGATTAAGGTT+AGG | 0.455452 | 3.1:+53630326 | MS.gene008363:CDS |
| CGAGAAGATAGATAGGCTAA+TGG | 0.461422 | 3.1:+53631468 | MS.gene008363:CDS |
| GTCAAAGGATCCCAAGAGTT+CGG | 0.461662 | 3.1:+53630480 | MS.gene008363:CDS |
| ACGGTACCAGGAGGAGTTAG+AGG | 0.461982 | 3.1:+53630918 | MS.gene008363:CDS |
| AGAAATTGGGGCAAATGAAT+GGG | 0.462562 | 3.1:+53630422 | MS.gene008363:CDS |
| ACAAGATCCGGATAAAGTTC+CGG | 0.468807 | 3.1:-53629980 | None:intergenic |
| TCTTCCTCATCCGAACTCTT+GGG | 0.471486 | 3.1:-53630490 | None:intergenic |
| TTCTTTCAATCGGCGTTCGA+AGG | 0.471752 | 3.1:-53629852 | None:intergenic |
| TCAAATTGAGTTTGATGACT+TGG | 0.471831 | 3.1:+53631727 | MS.gene008363:CDS |
| GAATTTGATTGAGGTGAAAC+CGG | 0.478794 | 3.1:+53630258 | MS.gene008363:CDS |
| GTGGAATCTTGAGGGGCTCT+AGG | 0.483156 | 3.1:+53631407 | MS.gene008363:CDS |
| AAGTTGTTGAAGTGGCTGTT+GGG | 0.484456 | 3.1:+53630310 | MS.gene008363:CDS |
| CTTTCCAGGTGGAATCTTGA+GGG | 0.489985 | 3.1:+53631399 | MS.gene008363:intron |
| TGCGTTTGGATGAGCGGTTG+CGG | 0.491992 | 3.1:-53629706 | None:intergenic |
| AAAAGCTGAAACTGAATGGT+TGG | 0.492737 | 3.1:+53631703 | MS.gene008363:CDS |
| GGTGTCGTTGAATTTGCGTT+TGG | 0.492933 | 3.1:-53629720 | None:intergenic |
| TTCGCTCCTCTAACTCCTCC+TGG | 0.495355 | 3.1:-53630924 | None:intergenic |
| GTTGTCGACGGCGTCGATTG+TGG | 0.497342 | 3.1:-53629804 | None:intergenic |
| GGTTCTTGTTGATGCGCTTG+TGG | 0.498065 | 3.1:+53630135 | MS.gene008363:CDS |
| GTTGGGGAAGATTAAGGTTA+GGG | 0.503090 | 3.1:+53630327 | MS.gene008363:CDS |
| GGCTAATGGAACTATACATC+AGG | 0.506522 | 3.1:+53631482 | MS.gene008363:CDS |
| TAAAGTTCTTGCTGGAGCAC+CGG | 0.510139 | 3.1:+53629961 | MS.gene008363:CDS |
| ACATTGAGGTTAACAAGATC+CGG | 0.510454 | 3.1:-53629992 | None:intergenic |
| TTTGCATCGGTTGTCGGAGA+AGG | 0.512034 | 3.1:+53630189 | MS.gene008363:CDS |
| AGAGAGATCGATGTCGTTGG+TGG | 0.524918 | 3.1:-53629753 | None:intergenic |
| CAAACAATCTCCGCCACTGC+CGG | 0.525226 | 3.1:-53630277 | None:intergenic |
| GAGATCGATGTCGTTGGTGG+AGG | 0.529331 | 3.1:-53629750 | None:intergenic |
| GAACAAGAAAGAACGGTACC+AGG | 0.534798 | 3.1:+53630906 | MS.gene008363:CDS |
| GAGTAAAAGCTGAAACTGAA+TGG | 0.536506 | 3.1:+53631699 | MS.gene008363:CDS |
| AATTGAGTTTGATGACTTGG+AGG | 0.536575 | 3.1:+53631730 | MS.gene008363:CDS |
| GACGATTGAGAATTTGATTG+AGG | 0.537691 | 3.1:+53630249 | MS.gene008363:CDS |
| TGAGGTGAAACCGGCAGTGG+CGG | 0.543713 | 3.1:+53630267 | MS.gene008363:CDS |
| TCTTTCCAGGTGGAATCTTG+AGG | 0.544919 | 3.1:+53631398 | MS.gene008363:intron |
| GCATCAACAAGAACCTTAGC+AGG | 0.545350 | 3.1:-53630127 | None:intergenic |
| GGATCCCAAGAGTTCGGATG+AGG | 0.548449 | 3.1:+53630486 | MS.gene008363:CDS |
| GATTGAGGTGAAACCGGCAG+TGG | 0.550960 | 3.1:+53630264 | MS.gene008363:CDS |
| TGAATTTGCGTTTGGATGAG+CGG | 0.551592 | 3.1:-53629712 | None:intergenic |
| GTCGTTGGTGGAGGATGAAA+CGG | 0.556914 | 3.1:-53629741 | None:intergenic |
| GAAGTTGTTGAAGTGGCTGT+TGG | 0.565011 | 3.1:+53630309 | MS.gene008363:CDS |
| TCGGTTGTCGGAGAAGGATG+CGG | 0.566965 | 3.1:+53630195 | MS.gene008363:CDS |
| TTTCCAGGTGGAATCTTGAG+GGG | 0.579676 | 3.1:+53631400 | MS.gene008363:intron |
| TGCTTGTGCAGAATTTGCAT+CGG | 0.590572 | 3.1:+53630176 | MS.gene008363:CDS |
| GAGTTCGGATGAGGAAGAGA+TGG | 0.592926 | 3.1:+53630495 | MS.gene008363:CDS |
| ATTGGGGCAAATGAATGGGG+TGG | 0.594421 | 3.1:+53630426 | MS.gene008363:CDS |
| GAAATTGGGGCAAATGAATG+GGG | 0.595172 | 3.1:+53630423 | MS.gene008363:CDS |
| TCTTGATGGACCAGAAGAGA+AGG | 0.605271 | 3.1:+53632586 | MS.gene008363:CDS |
| GCTTGTGGATTGTAGTGTGT+TGG | 0.607878 | 3.1:+53630150 | MS.gene008363:CDS |
| TTTGGATGAGCGGTTGCGGG+TGG | 0.608239 | 3.1:-53629702 | None:intergenic |
| TGAGAATGATGAACCTGCTA+AGG | 0.609377 | 3.1:+53630114 | MS.gene008363:CDS |
| AAGAGAGAGATCGATGTCGT+TGG | 0.609485 | 3.1:-53629756 | None:intergenic |
| GTCAGGCATTCACAAATGAG+AGG | 0.612340 | 3.1:+53632324 | MS.gene008363:intron |
| TTCAACAAATCAACAATCGA+CGG | 0.618753 | 3.1:-53630019 | None:intergenic |
| GGTGGCGATGTATAAGTCAA+AGG | 0.624239 | 3.1:+53630465 | MS.gene008363:CDS |
| CGGCGAATCAGAAGAAATTG+GGG | 0.625471 | 3.1:+53630410 | MS.gene008363:CDS |
| CAATCGACGGAACAACATTG+AGG | 0.625918 | 3.1:-53630006 | None:intergenic |
| AGAAGACGAAGTTGTTGAAG+TGG | 0.628312 | 3.1:+53630302 | MS.gene008363:CDS |
| ACTTAGTAAACAGCATGTCA+AGG | 0.628328 | 3.1:+53632377 | MS.gene008363:CDS |
| TAGTAATAAGCAGTATGCGT+CGG | 0.638885 | 3.1:+53630357 | MS.gene008363:CDS |
| GGTGGATGTGATGCTTCAGG+CGG | 0.654680 | 3.1:+53630444 | MS.gene008363:CDS |
| AGTTGTTGAAGTGGCTGTTG+GGG | 0.656007 | 3.1:+53630311 | MS.gene008363:CDS |
| CGCCAGCGTATTATAAACCG+CGG | 0.684567 | 3.1:-53630227 | None:intergenic |
| TGCCGCGGTTTATAATACGC+TGG | 0.697372 | 3.1:+53630225 | MS.gene008363:CDS |
| CAAGAAAGAACGGTACCAGG+AGG | 0.701118 | 3.1:+53630909 | MS.gene008363:CDS |
| GGATGCGGATGAGAATGCCG+CGG | 0.741133 | 3.1:+53630210 | MS.gene008363:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAAAAAGAAAAAATTA+AGG | - | chr3.1:53631357-53631376 | None:intergenic | 10.0% |
| !! | TTTGCTAAATAAAATAAATA+AGG | - | chr3.1:53631796-53631815 | None:intergenic | 10.0% |
| !!! | ATATTTTTGTAATTTATAGA+TGG | + | chr3.1:53631821-53631840 | MS.gene008363:intron | 10.0% |
| !! | ATAAATTAGTCAGTATAAAA+AGG | - | chr3.1:53632164-53632183 | None:intergenic | 15.0% |
| !! | ATATTACATAACTAATGATA+AGG | - | chr3.1:53631051-53631070 | None:intergenic | 15.0% |
| !! | CATATTAAAAAAAACATGTT+TGG | + | chr3.1:53632011-53632030 | MS.gene008363:intron | 15.0% |
| !! | TATTACATAACTAATGATAA+GGG | - | chr3.1:53631050-53631069 | None:intergenic | 15.0% |
| !! | TTGATTGTTATCTTATAAAT+TGG | + | chr3.1:53630827-53630846 | MS.gene008363:intron | 15.0% |
| !!! | TTTATATATGATTTTTCAGT+TGG | + | chr3.1:53632179-53632198 | MS.gene008363:intron | 15.0% |
| !! | ACCAAAAATTTAATTAAGTC+AGG | - | chr3.1:53632306-53632325 | None:intergenic | 20.0% |
| !!! | AAAGTATTAGTTTATATCTC+GGG | - | chr3.1:53631266-53631285 | None:intergenic | 20.0% |
| !!! | ACTTAATTAAATTTTTGGTC+AGG | + | chr3.1:53632307-53632326 | MS.gene008363:intron | 20.0% |
| !!! | CAAAGTATTAGTTTATATCT+CGG | - | chr3.1:53631267-53631286 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTAAATACCAG+TGG | + | chr3.1:53632084-53632103 | MS.gene008363:intron | 20.0% |
| ! | AAAGATTCAGAAGTTCTTAA+TGG | + | chr3.1:53632622-53632641 | MS.gene008363:CDS | 25.0% |
| ! | AAATTTAATTAAGTCAGGCA+AGG | - | chr3.1:53632301-53632320 | None:intergenic | 25.0% |
| ! | CAATCATGAACACAATATAA+GGG | - | chr3.1:53631529-53631548 | None:intergenic | 25.0% |
| ! | GTAAAAAGAACAAGAAAGAA+CGG | + | chr3.1:53630899-53630918 | MS.gene008363:CDS | 25.0% |
| ! | GTATAGAATCATAAAAGATG+TGG | + | chr3.1:53631614-53631633 | MS.gene008363:intron | 25.0% |
| ! | TAACATGTATACTTTACCAT+TGG | + | chr3.1:53631081-53631100 | MS.gene008363:intron | 25.0% |
| ! | TAGGAATATCATGACAATAT+TGG | + | chr3.1:53632560-53632579 | MS.gene008363:intron | 25.0% |
| ! | TATTATGAAGCAGAAGAAAT+TGG | + | chr3.1:53630612-53630631 | MS.gene008363:intron | 25.0% |
| ! | TTAATACAGAATGGAACAAA+TGG | - | chr3.1:53631563-53631582 | None:intergenic | 25.0% |
| !! | AAGTATTAGTTTATATCTCG+GGG | - | chr3.1:53631265-53631284 | None:intergenic | 25.0% |
| !! | GCCTGACTTAATTAAATTTT+TGG | + | chr3.1:53632302-53632321 | MS.gene008363:intron | 25.0% |
| !! | TATTTTGTTACTGTTAGTGT+TGG | + | chr3.1:53632454-53632473 | MS.gene008363:intron | 25.0% |
| !! | TTCTTGTTCTTTTTACAGAT+GGG | - | chr3.1:53630895-53630914 | None:intergenic | 25.0% |
| !! | TTTCTTGTTCTTTTTACAGA+TGG | - | chr3.1:53630896-53630915 | None:intergenic | 25.0% |
| AAAAGATGCAACTACTTACT+CGG | - | chr3.1:53632235-53632254 | None:intergenic | 30.0% | |
| AGAACCAGATTAATACAGAA+TGG | - | chr3.1:53631572-53631591 | None:intergenic | 30.0% | |
| AGAGCTTCTGAATTTGAATT+TGG | - | chr3.1:53632518-53632537 | None:intergenic | 30.0% | |
| AGCTTCTGAATTTGAATTTG+GGG | - | chr3.1:53632516-53632535 | None:intergenic | 30.0% | |
| ATCTCAACTGCAATTTGAAA+TGG | - | chr3.1:53632064-53632083 | None:intergenic | 30.0% | |
| ATGATAGAACTGTCTAATAC+GGG | + | chr3.1:53631203-53631222 | MS.gene008363:intron | 30.0% | |
| GAGCTTCTGAATTTGAATTT+GGG | - | chr3.1:53632517-53632536 | None:intergenic | 30.0% | |
| GATGATAGAACTGTCTAATA+CGG | + | chr3.1:53631202-53631221 | MS.gene008363:intron | 30.0% | |
| GCAATCATGAACACAATATA+AGG | - | chr3.1:53631530-53631549 | None:intergenic | 30.0% | |
| TACAATCGTAAACTAGAATC+TGG | + | chr3.1:53631858-53631877 | MS.gene008363:CDS | 30.0% | |
| TCACTAGTTGCTTCATTATT+TGG | + | chr3.1:53630952-53630971 | MS.gene008363:CDS | 30.0% | |
| TCATGATATTCCTAAACCAT+GGG | - | chr3.1:53632554-53632573 | None:intergenic | 30.0% | |
| TCTAGAGAGTTCTACAAAAT+TGG | - | chr3.1:53630784-53630803 | None:intergenic | 30.0% | |
| TGAATTTGAATTTGGGGATT+GGG | - | chr3.1:53632510-53632529 | None:intergenic | 30.0% | |
| TGTTCCATTCTGTATTAATC+TGG | + | chr3.1:53631565-53631584 | MS.gene008363:intron | 30.0% | |
| TTCAACAAATCAACAATCGA+CGG | - | chr3.1:53630022-53630041 | None:intergenic | 30.0% | |
| TTTACTCTATCCGAATATCT+GGG | - | chr3.1:53631686-53631705 | None:intergenic | 30.0% | |
| ! | CTACAAAATTGGTTTAGAAG+TGG | - | chr3.1:53630773-53630792 | None:intergenic | 30.0% |
| ! | CTTCGATGTTTTCTTTCAAT+CGG | - | chr3.1:53629865-53629884 | None:intergenic | 30.0% |
| ! | TCAAATTGAGTTTGATGACT+TGG | + | chr3.1:53631727-53631746 | MS.gene008363:CDS | 30.0% |
| ! | TTCAAATTCAGAAGCTCTAA+CGG | + | chr3.1:53632520-53632539 | MS.gene008363:intron | 30.0% |
| ! | TTTTACTCTATCCGAATATC+TGG | - | chr3.1:53631687-53631706 | None:intergenic | 30.0% |
| !! | ATAAAAAGGTGCTGTAAAAC+TGG | - | chr3.1:53632150-53632169 | None:intergenic | 30.0% |
| !! | GAACGTTTTGTTGATGTTTT+GGG | + | chr3.1:53630694-53630713 | MS.gene008363:intron | 30.0% |
| !! | GTATTAATCTGGTTCTAAGT+TGG | + | chr3.1:53631576-53631595 | MS.gene008363:intron | 30.0% |
| !! | TGAACGTTTTGTTGATGTTT+TGG | + | chr3.1:53630693-53630712 | MS.gene008363:intron | 30.0% |
| !! | TGGAACAAATGGATTAAGTT+CGG | - | chr3.1:53631552-53631571 | None:intergenic | 30.0% |
| !! | TTGAGTTTTGACATAGTATG+TGG | + | chr3.1:53630998-53631017 | MS.gene008363:intron | 30.0% |
| AAAAGCTGAAACTGAATGGT+TGG | + | chr3.1:53631703-53631722 | MS.gene008363:CDS | 35.0% | |
| AACCTTTCCTTATTCTCCAA+CGG | - | chr3.1:53630559-53630578 | None:intergenic | 35.0% | |
| AAGAAATTGGGGCAAATGAA+TGG | + | chr3.1:53630421-53630440 | MS.gene008363:CDS | 35.0% | |
| AATGGAACTATACATCAGGT+AGG | + | chr3.1:53631486-53631505 | MS.gene008363:intron | 35.0% | |
| ACATTGAGGTTAACAAGATC+CGG | - | chr3.1:53629995-53630014 | None:intergenic | 35.0% | |
| ACTTAGTAAACAGCATGTCA+AGG | + | chr3.1:53632377-53632396 | MS.gene008363:CDS | 35.0% | |
| AGAAATTGGGGCAAATGAAT+GGG | + | chr3.1:53630422-53630441 | MS.gene008363:CDS | 35.0% | |
| ATCTGGACTTTATACTCTTC+AGG | + | chr3.1:53631875-53631894 | MS.gene008363:CDS | 35.0% | |
| CTGAATTTGAATTTGGGGAT+TGG | - | chr3.1:53632511-53632530 | None:intergenic | 35.0% | |
| GAACACAATATAAGGGAAAG+AGG | - | chr3.1:53631522-53631541 | None:intergenic | 35.0% | |
| GAATTTGATTGAGGTGAAAC+CGG | + | chr3.1:53630258-53630277 | MS.gene008363:CDS | 35.0% | |
| GACGATTGAGAATTTGATTG+AGG | + | chr3.1:53630249-53630268 | MS.gene008363:CDS | 35.0% | |
| GAGTAAAAGCTGAAACTGAA+TGG | + | chr3.1:53631699-53631718 | MS.gene008363:CDS | 35.0% | |
| GTCATGATATTCCTAAACCA+TGG | - | chr3.1:53632555-53632574 | None:intergenic | 35.0% | |
| TAGTAATAAGCAGTATGCGT+CGG | + | chr3.1:53630357-53630376 | MS.gene008363:CDS | 35.0% | |
| TGAGTACTCTATATCTTTCC+AGG | + | chr3.1:53631385-53631404 | MS.gene008363:intron | 35.0% | |
| TGATAGAACTGTCTAATACG+GGG | + | chr3.1:53631204-53631223 | MS.gene008363:intron | 35.0% | |
| TGCATATTTCAATTCACGCA+TGG | - | chr3.1:53631310-53631329 | None:intergenic | 35.0% | |
| TGCTTCATTATTTGGTAAGC+AGG | + | chr3.1:53630960-53630979 | MS.gene008363:intron | 35.0% | |
| ! | AATTGAGTTTGATGACTTGG+AGG | + | chr3.1:53631730-53631749 | MS.gene008363:CDS | 35.0% |
| ! | ACAGCTTTTGCAGCTTTTAT+GGG | + | chr3.1:53630724-53630743 | MS.gene008363:intron | 35.0% |
| ! | GAAATAACTCAAGGTACCAA+TGG | - | chr3.1:53631100-53631119 | None:intergenic | 35.0% |
| ! | GATTTTGTTGCAGAGTAGTA+CGG | + | chr3.1:53630390-53630409 | MS.gene008363:CDS | 35.0% |
| ! | GGATTATTTTCCCATGGTTT+AGG | + | chr3.1:53632541-53632560 | MS.gene008363:intron | 35.0% |
| ! | TTTTGCAGCTTTTATGGGTA+AGG | + | chr3.1:53630729-53630748 | MS.gene008363:intron | 35.0% |
| !! | TGATGTTGTTACGTTGATTC+AGG | + | chr3.1:53630066-53630085 | MS.gene008363:CDS | 35.0% |
| !!! | AGGAGAGAACGAGTTTTTTT+AGG | - | chr3.1:53629835-53629854 | None:intergenic | 35.0% |
| !!! | CTGTCATTTTGGGTCATATT+TGG | + | chr3.1:53632205-53632224 | MS.gene008363:CDS | 35.0% |
| !!! | GAACGAGTTTTTTTAGGGTT+CGG | - | chr3.1:53629829-53629848 | None:intergenic | 35.0% |
| !!! | GGAGAGAACGAGTTTTTTTA+GGG | - | chr3.1:53629834-53629853 | None:intergenic | 35.0% |
| !!! | TCTAACGGATTATTTTCCCA+TGG | + | chr3.1:53632535-53632554 | MS.gene008363:intron | 35.0% |
| AAAATCAAGTGCCCTTATCG+CGG | - | chr3.1:53630647-53630666 | None:intergenic | 40.0% | |
| AAACTGGCATCTCATTCAGA+AGG | - | chr3.1:53632134-53632153 | None:intergenic | 40.0% | |
| AAGTTGTTGAAGTGGCTGTT+GGG | + | chr3.1:53630310-53630329 | MS.gene008363:CDS | 40.0% | |
| ACAAGATCCGGATAAAGTTC+CGG | - | chr3.1:53629983-53630002 | None:intergenic | 40.0% | |
| ACGGCGAATCAGAAGAAATT+GGG | + | chr3.1:53630409-53630428 | MS.gene008363:CDS | 40.0% | |
| ACTACTACCAAGCCATTACT+TGG | - | chr3.1:53631928-53631947 | None:intergenic | 40.0% | |
| AGAAGACGAAGTTGTTGAAG+TGG | + | chr3.1:53630302-53630321 | MS.gene008363:CDS | 40.0% | |
| CACAAGCTTAAAGTTCTTGC+TGG | + | chr3.1:53629953-53629972 | MS.gene008363:CDS | 40.0% | |
| CATGACTGCTTCAAAACATG+GGG | + | chr3.1:53631976-53631995 | MS.gene008363:intron | 40.0% | |
| CCATGACTGCTTCAAAACAT+GGG | + | chr3.1:53631975-53631994 | MS.gene008363:intron | 40.0% | |
| CGAGAAGATAGATAGGCTAA+TGG | + | chr3.1:53631468-53631487 | MS.gene008363:CDS | 40.0% | |
| CTTCAGGTATATATCCTCTG+CGG | + | chr3.1:53632405-53632424 | MS.gene008363:intron | 40.0% | |
| GAAAGGTTTGTGAAAGCAGA+AGG | + | chr3.1:53630571-53630590 | MS.gene008363:intron | 40.0% | |
| GAAATTGGGGCAAATGAATG+GGG | + | chr3.1:53630423-53630442 | MS.gene008363:CDS | 40.0% | |
| GACAATATTGGCGATCTTGA+TGG | + | chr3.1:53632572-53632591 | MS.gene008363:CDS | 40.0% | |
| GCATGTCAAGGATATACTTC+AGG | + | chr3.1:53632389-53632408 | MS.gene008363:CDS | 40.0% | |
| GGCTAATGGAACTATACATC+AGG | + | chr3.1:53631482-53631501 | MS.gene008363:CDS | 40.0% | |
| GTACTCTATATCTTTCCAGG+TGG | + | chr3.1:53631388-53631407 | MS.gene008363:intron | 40.0% | |
| GTTGGGGAAGATTAAGGTTA+GGG | + | chr3.1:53630327-53630346 | MS.gene008363:CDS | 40.0% | |
| TAAGCTTGTGAAGCTCTTCA+TGG | - | chr3.1:53629943-53629962 | None:intergenic | 40.0% | |
| TACGGCGAATCAGAAGAAAT+TGG | + | chr3.1:53630408-53630427 | MS.gene008363:CDS | 40.0% | |
| TCAACAAAACGTTCACAAGC+CGG | - | chr3.1:53630688-53630707 | None:intergenic | 40.0% | |
| TCCATGACTGCTTCAAAACA+TGG | + | chr3.1:53631974-53631993 | MS.gene008363:intron | 40.0% | |
| TGAATTTGCGTTTGGATGAG+CGG | - | chr3.1:53629715-53629734 | None:intergenic | 40.0% | |
| TGACATAGTATGTGGACAGA+CGG | + | chr3.1:53631006-53631025 | MS.gene008363:intron | 40.0% | |
| TGAGAATGATGAACCTGCTA+AGG | + | chr3.1:53630114-53630133 | MS.gene008363:CDS | 40.0% | |
| TGCTTGTGCAGAATTTGCAT+CGG | + | chr3.1:53630176-53630195 | MS.gene008363:CDS | 40.0% | |
| TGTTGGGGAAGATTAAGGTT+AGG | + | chr3.1:53630326-53630345 | MS.gene008363:CDS | 40.0% | |
| TTATAAGCAGTAAGCACCAC+TGG | - | chr3.1:53632103-53632122 | None:intergenic | 40.0% | |
| TTATTCAATCATAGCCGCAG+AGG | - | chr3.1:53632422-53632441 | None:intergenic | 40.0% | |
| ! | ATGTTGTTTGTTGATGCCGT+TGG | + | chr3.1:53630540-53630559 | MS.gene008363:intron | 40.0% |
| ! | CTTTTTCCCTCCCAGATATT+CGG | + | chr3.1:53631673-53631692 | MS.gene008363:intron | 40.0% |
| ! | GACAGCTTTTGCAGCTTTTA+TGG | + | chr3.1:53630723-53630742 | MS.gene008363:intron | 40.0% |
| ! | TACCTTGAGTTATTTCGCGA+AGG | + | chr3.1:53631104-53631123 | MS.gene008363:intron | 40.0% |
| !! | CGAAGGAGAGATTAACTTGT+TGG | + | chr3.1:53631121-53631140 | MS.gene008363:intron | 40.0% |
| !! | TCAGTTGGTTGCTGTCATTT+TGG | + | chr3.1:53632194-53632213 | MS.gene008363:intron | 40.0% |
| !!! | CAGTTGGTTGCTGTCATTTT+GGG | + | chr3.1:53632195-53632214 | MS.gene008363:intron | 40.0% |
| AAGAGAGAGATCGATGTCGT+TGG | - | chr3.1:53629759-53629778 | None:intergenic | 45.0% | |
| ACGAGTGCGAGAAGATAGAT+AGG | + | chr3.1:53631461-53631480 | MS.gene008363:CDS | 45.0% | |
| ACTCTATCCGAATATCTGGG+AGG | - | chr3.1:53631683-53631702 | None:intergenic | 45.0% | |
| ACTGATGCCAAGTAATGGCT+TGG | + | chr3.1:53631918-53631937 | MS.gene008363:intron | 45.0% | |
| AGAACTGTCTAATACGGGGA+TGG | + | chr3.1:53631208-53631227 | MS.gene008363:intron | 45.0% | |
| AGCCATTACTTGGCATCAGT+TGG | - | chr3.1:53631918-53631937 | None:intergenic | 45.0% | |
| AGTTGTTGAAGTGGCTGTTG+GGG | + | chr3.1:53630311-53630330 | MS.gene008363:CDS | 45.0% | |
| ATATCTCGGGGACAGTTCAA+GGG | - | chr3.1:53631253-53631272 | None:intergenic | 45.0% | |
| CAATCGACGGAACAACATTG+AGG | - | chr3.1:53630009-53630028 | None:intergenic | 45.0% | |
| CGGCGAATCAGAAGAAATTG+GGG | + | chr3.1:53630410-53630429 | MS.gene008363:CDS | 45.0% | |
| CTCCTTCGCGAAATAACTCA+AGG | - | chr3.1:53631109-53631128 | None:intergenic | 45.0% | |
| CTCTATCCGAATATCTGGGA+GGG | - | chr3.1:53631682-53631701 | None:intergenic | 45.0% | |
| CTCTTCATGGAGCTCCAATT+CGG | - | chr3.1:53629930-53629949 | None:intergenic | 45.0% | |
| CTTTCCAGGTGGAATCTTGA+GGG | + | chr3.1:53631399-53631418 | MS.gene008363:intron | 45.0% | |
| GAACAAGAAAGAACGGTACC+AGG | + | chr3.1:53630906-53630925 | MS.gene008363:CDS | 45.0% | |
| GAAGTTGTTGAAGTGGCTGT+TGG | + | chr3.1:53630309-53630328 | MS.gene008363:CDS | 45.0% | |
| GACCAACTGATGCCAAGTAA+TGG | + | chr3.1:53631913-53631932 | MS.gene008363:intron | 45.0% | |
| GCATCAACAAGAACCTTAGC+AGG | - | chr3.1:53630130-53630149 | None:intergenic | 45.0% | |
| GGTGGCGATGTATAAGTCAA+AGG | + | chr3.1:53630465-53630484 | MS.gene008363:CDS | 45.0% | |
| GTCAAAGGATCCCAAGAGTT+CGG | + | chr3.1:53630480-53630499 | MS.gene008363:CDS | 45.0% | |
| GTCAGGCATTCACAAATGAG+AGG | + | chr3.1:53632324-53632343 | MS.gene008363:intron | 45.0% | |
| GTTGATGCCGTTGGAGAATA+AGG | + | chr3.1:53630549-53630568 | MS.gene008363:intron | 45.0% | |
| TAAAGTTCTTGCTGGAGCAC+CGG | + | chr3.1:53629961-53629980 | MS.gene008363:CDS | 45.0% | |
| TAATCAACCCGAACGATTCG+CGG | + | chr3.1:53629901-53629920 | MS.gene008363:CDS | 45.0% | |
| TATATCTCGGGGACAGTTCA+AGG | - | chr3.1:53631254-53631273 | None:intergenic | 45.0% | |
| TCTTCCTCATCCGAACTCTT+GGG | - | chr3.1:53630493-53630512 | None:intergenic | 45.0% | |
| TCTTTCCAGGTGGAATCTTG+AGG | + | chr3.1:53631398-53631417 | MS.gene008363:intron | 45.0% | |
| TGCCGTTGGAGAATAAGGAA+AGG | + | chr3.1:53630554-53630573 | MS.gene008363:intron | 45.0% | |
| TGCGATGACAAATTACCCTC+CGG | + | chr3.1:53630666-53630685 | MS.gene008363:intron | 45.0% | |
| TTCTTTCAATCGGCGTTCGA+AGG | - | chr3.1:53629855-53629874 | None:intergenic | 45.0% | |
| TTTCCAGGTGGAATCTTGAG+GGG | + | chr3.1:53631400-53631419 | MS.gene008363:intron | 45.0% | |
| ! | GCTTGTGGATTGTAGTGTGT+TGG | + | chr3.1:53630150-53630169 | MS.gene008363:CDS | 45.0% |
| ! | TCTTGATGGACCAGAAGAGA+AGG | + | chr3.1:53632586-53632605 | MS.gene008363:CDS | 45.0% |
| !! | GCAGAATTTGCATCGGTTGT+CGG | + | chr3.1:53630183-53630202 | MS.gene008363:CDS | 45.0% |
| !! | GGTGTCGTTGAATTTGCGTT+TGG | - | chr3.1:53629723-53629742 | None:intergenic | 45.0% |
| !!! | CCCATGTTTTGAAGCAGTCA+TGG | - | chr3.1:53631978-53631997 | None:intergenic | 45.0% |
| !!! | TTTTAGGGTTCGGTTGTCGA+CGG | - | chr3.1:53629819-53629838 | None:intergenic | 45.0% |
| ACAAAACGTTCACAAGCCGG+AGG | - | chr3.1:53630685-53630704 | None:intergenic | 50.0% | |
| ACGATTCGCGGATTCCGAAT+TGG | + | chr3.1:53629913-53629932 | MS.gene008363:CDS | 50.0% | |
| AGAGAGATCGATGTCGTTGG+TGG | - | chr3.1:53629756-53629775 | None:intergenic | 50.0% | |
| ATTGGGGCAAATGAATGGGG+TGG | + | chr3.1:53630426-53630445 | MS.gene008363:CDS | 50.0% | |
| CAAAACGTTCACAAGCCGGA+GGG | - | chr3.1:53630684-53630703 | None:intergenic | 50.0% | |
| CAAGAAAGAACGGTACCAGG+AGG | + | chr3.1:53630909-53630928 | MS.gene008363:CDS | 50.0% | |
| CGCCAGCGTATTATAAACCG+CGG | - | chr3.1:53630230-53630249 | None:intergenic | 50.0% | |
| CTCTTCCTCATCCGAACTCT+TGG | - | chr3.1:53630494-53630513 | None:intergenic | 50.0% | |
| CTGGCATCTCATTCAGAAGG+CGG | - | chr3.1:53632131-53632150 | None:intergenic | 50.0% | |
| GAGTTCGGATGAGGAAGAGA+TGG | + | chr3.1:53630495-53630514 | MS.gene008363:CDS | 50.0% | |
| GGTTCTTGTTGATGCGCTTG+TGG | + | chr3.1:53630135-53630154 | MS.gene008363:CDS | 50.0% | |
| GTGGCTGTTGGGGAAGATTA+AGG | + | chr3.1:53630321-53630340 | MS.gene008363:CDS | 50.0% | |
| TATCTCGGGGACAGTTCAAG+GGG | - | chr3.1:53631252-53631271 | None:intergenic | 50.0% | |
| TGCCGCGGTTTATAATACGC+TGG | + | chr3.1:53630225-53630244 | MS.gene008363:CDS | 50.0% | |
| TTCGGAATCCGCGAATCGTT+CGG | - | chr3.1:53629912-53629931 | None:intergenic | 50.0% | |
| TTCGGATGAGGAAGAGATGG+TGG | + | chr3.1:53630498-53630517 | MS.gene008363:intron | 50.0% | |
| ! | GCAGTATGCGTCGGAGATTT+TGG | + | chr3.1:53630366-53630385 | MS.gene008363:CDS | 50.0% |
| ! | GTCGTTGGTGGAGGATGAAA+CGG | - | chr3.1:53629744-53629763 | None:intergenic | 50.0% |
| !! | GCGAATCGTTCGGGTTGATT+AGG | - | chr3.1:53629902-53629921 | None:intergenic | 50.0% |
| !! | TGGAGCACCGGAACTTTATC+CGG | + | chr3.1:53629973-53629992 | MS.gene008363:CDS | 50.0% |
| !! | TTTGCATCGGTTGTCGGAGA+AGG | + | chr3.1:53630189-53630208 | MS.gene008363:CDS | 50.0% |
| ACGGTACCAGGAGGAGTTAG+AGG | + | chr3.1:53630918-53630937 | MS.gene008363:CDS | 55.0% | |
| ATCAAGTGCCCTTATCGCGG+AGG | - | chr3.1:53630644-53630663 | None:intergenic | 55.0% | |
| ATCTCGGGGACAGTTCAAGG+GGG | - | chr3.1:53631251-53631270 | None:intergenic | 55.0% | |
| CAAACAATCTCCGCCACTGC+CGG | - | chr3.1:53630280-53630299 | None:intergenic | 55.0% | |
| GATTGAGGTGAAACCGGCAG+TGG | + | chr3.1:53630264-53630283 | MS.gene008363:CDS | 55.0% | |
| GGATCCCAAGAGTTCGGATG+AGG | + | chr3.1:53630486-53630505 | MS.gene008363:CDS | 55.0% | |
| GGTGGATGTGATGCTTCAGG+CGG | + | chr3.1:53630444-53630463 | MS.gene008363:CDS | 55.0% | |
| GGTGTATGCCTCCGCGATAA+GGG | + | chr3.1:53630633-53630652 | MS.gene008363:intron | 55.0% | |
| GTGGAATCTTGAGGGGCTCT+AGG | + | chr3.1:53631407-53631426 | MS.gene008363:CDS | 55.0% | |
| TCGGAATCCGCGAATCGTTC+GGG | - | chr3.1:53629911-53629930 | None:intergenic | 55.0% | |
| TCGGTTGTCGGAGAAGGATG+CGG | + | chr3.1:53630195-53630214 | MS.gene008363:CDS | 55.0% | |
| TGCGTTTGGATGAGCGGTTG+CGG | - | chr3.1:53629709-53629728 | None:intergenic | 55.0% | |
| TGGGGTGGATGTGATGCTTC+AGG | + | chr3.1:53630441-53630460 | MS.gene008363:CDS | 55.0% | |
| TGGTGTATGCCTCCGCGATA+AGG | + | chr3.1:53630632-53630651 | MS.gene008363:intron | 55.0% | |
| TGTGCTCGCTCCTTCTCTTC+TGG | - | chr3.1:53632599-53632618 | None:intergenic | 55.0% | |
| TTCGCTCCTCTAACTCCTCC+TGG | - | chr3.1:53630927-53630946 | None:intergenic | 55.0% | |
| ! | GAGATCGATGTCGTTGGTGG+AGG | - | chr3.1:53629753-53629772 | None:intergenic | 55.0% |
| !! | TTGTCGACGGCGTCGATTGT+GGG | - | chr3.1:53629806-53629825 | None:intergenic | 55.0% |
| GAGCCCCTCAAGATTCCACC+TGG | - | chr3.1:53631406-53631425 | None:intergenic | 60.0% | |
| GCGTTTGGATGAGCGGTTGC+GGG | - | chr3.1:53629708-53629727 | None:intergenic | 60.0% | |
| GGATGCGGATGAGAATGCCG+CGG | + | chr3.1:53630210-53630229 | MS.gene008363:CDS | 60.0% | |
| GGATGTGATGCTTCAGGCGG+TGG | + | chr3.1:53630447-53630466 | MS.gene008363:CDS | 60.0% | |
| TCTCGGGGACAGTTCAAGGG+GGG | - | chr3.1:53631250-53631269 | None:intergenic | 60.0% | |
| TGAGGTGAAACCGGCAGTGG+CGG | + | chr3.1:53630267-53630286 | MS.gene008363:CDS | 60.0% | |
| TTTGGATGAGCGGTTGCGGG+TGG | - | chr3.1:53629705-53629724 | None:intergenic | 60.0% | |
| !! | GACGGCGTCGATTGTGGGTT+GGG | - | chr3.1:53629801-53629820 | None:intergenic | 60.0% |
| !! | GTTGTCGACGGCGTCGATTG+TGG | - | chr3.1:53629807-53629826 | None:intergenic | 60.0% |
| !! | CGACGGCGTCGATTGTGGGT+TGG | - | chr3.1:53629802-53629821 | None:intergenic | 65.0% |
| GGATGAGCGGTTGCGGGTGG+TGG | - | chr3.1:53629702-53629721 | None:intergenic | 70.0% | |
| ! | TGAGCGGTTGCGGGTGGTGG+TGG | - | chr3.1:53629699-53629718 | None:intergenic | 70.0% |
| !! | CGGTTGCGGGTGGTGGTGGA+TGG | - | chr3.1:53629695-53629714 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53629686 | 53632652 | 53629686 | ID=MS.gene008363 |
| chr3.1 | mRNA | 53629686 | 53632652 | 53629686 | ID=MS.gene008363.t1;Parent=MS.gene008363 |
| chr3.1 | exon | 53629686 | 53630516 | 53629686 | ID=MS.gene008363.t1.exon1;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53629686 | 53630516 | 53629686 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53630889 | 53630973 | 53630889 | ID=MS.gene008363.t1.exon2;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53630889 | 53630973 | 53630889 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53631407 | 53631503 | 53631407 | ID=MS.gene008363.t1.exon3;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53631407 | 53631503 | 53631407 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53631688 | 53631751 | 53631688 | ID=MS.gene008363.t1.exon4;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53631688 | 53631751 | 53631688 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53631840 | 53631896 | 53631840 | ID=MS.gene008363.t1.exon5;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53631840 | 53631896 | 53631840 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53632198 | 53632235 | 53632198 | ID=MS.gene008363.t1.exon6;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53632198 | 53632235 | 53632198 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53632329 | 53632410 | 53632329 | ID=MS.gene008363.t1.exon7;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53632329 | 53632410 | 53632329 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| chr3.1 | exon | 53632563 | 53632652 | 53632563 | ID=MS.gene008363.t1.exon8;Parent=MS.gene008363.t1 |
| chr3.1 | CDS | 53632563 | 53632652 | 53632563 | ID=cds.MS.gene008363.t1;Parent=MS.gene008363.t1 |
| Gene Sequence |
| Protein sequence |
