Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008379.t1 | RHN68031.1 | 88.9 | 677 | 26 | 1 | 1 | 628 | 1 | 677 | 0.00E+00 | 1182.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008379.t1 | Q9SHY2 | 71.6 | 654 | 134 | 3 | 26 | 628 | 22 | 674 | 2.5e-272 | 939.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008379.t1 | A0A396ITK6 | 88.9 | 677 | 26 | 1 | 1 | 628 | 1 | 677 | 0.0e+00 | 1182.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008379 | MS.gene37726 | PPI |
| MS.gene45566 | MS.gene008379 | PPI |
| MS.gene05216 | MS.gene008379 | PPI |
| MS.gene008379 | MS.gene57831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008379.t1 | MTR_3g063520 | 88.626 | 677 | 28 | 1 | 1 | 628 | 1 | 677 | 0.0 | 1120 |
| MS.gene008379.t1 | MTR_5g091600 | 82.622 | 679 | 57 | 3 | 1 | 628 | 1 | 669 | 0.0 | 1092 |
| MS.gene008379.t1 | MTR_3g063490 | 81.113 | 683 | 74 | 2 | 1 | 628 | 1 | 683 | 0.0 | 1086 |
| MS.gene008379.t1 | MTR_6g077870 | 68.049 | 651 | 159 | 4 | 26 | 628 | 50 | 699 | 0.0 | 892 |
| MS.gene008379.t1 | MTR_6g077870 | 72.817 | 504 | 134 | 3 | 127 | 628 | 36 | 538 | 0.0 | 759 |
| MS.gene008379.t1 | MTR_3g092090 | 52.049 | 659 | 257 | 5 | 20 | 626 | 12 | 663 | 0.0 | 687 |
| MS.gene008379.t1 | MTR_7g028250 | 53.023 | 645 | 240 | 6 | 39 | 626 | 35 | 673 | 0.0 | 686 |
| MS.gene008379.t1 | MTR_3g092090 | 51.852 | 648 | 253 | 5 | 20 | 615 | 12 | 652 | 0.0 | 671 |
| MS.gene008379.t1 | MTR_1g007580 | 48.737 | 673 | 277 | 7 | 19 | 628 | 4 | 671 | 0.0 | 651 |
| MS.gene008379.t1 | MTR_0312s0020 | 48.109 | 661 | 285 | 5 | 20 | 628 | 17 | 671 | 0.0 | 645 |
| MS.gene008379.t1 | MTR_1g007540 | 48.109 | 661 | 285 | 5 | 20 | 628 | 17 | 671 | 0.0 | 645 |
| MS.gene008379.t1 | MTR_1g077840 | 47.655 | 661 | 288 | 5 | 20 | 628 | 25 | 679 | 0.0 | 641 |
| MS.gene008379.t1 | MTR_5g091615 | 81.977 | 172 | 28 | 1 | 457 | 628 | 41 | 209 | 2.62e-86 | 271 |
| MS.gene008379.t1 | MTR_1626s0010 | 51.261 | 238 | 113 | 1 | 168 | 405 | 1 | 235 | 5.54e-82 | 258 |
| MS.gene008379.t1 | MTR_0312s0050 | 48.780 | 123 | 52 | 3 | 16 | 127 | 1 | 123 | 2.87e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008379.t1 | AT1G65730 | 71.320 | 659 | 135 | 4 | 21 | 628 | 19 | 674 | 0.0 | 956 |
| MS.gene008379.t1 | AT3G17650 | 67.431 | 654 | 159 | 3 | 29 | 628 | 46 | 699 | 0.0 | 861 |
| MS.gene008379.t1 | AT3G17650 | 67.431 | 654 | 159 | 3 | 29 | 628 | 46 | 699 | 0.0 | 861 |
| MS.gene008379.t1 | AT1G48370 | 66.565 | 655 | 164 | 2 | 29 | 628 | 55 | 709 | 0.0 | 849 |
| MS.gene008379.t1 | AT1G48370 | 70.784 | 510 | 141 | 1 | 127 | 628 | 37 | 546 | 0.0 | 718 |
| MS.gene008379.t1 | AT3G27020 | 52.950 | 661 | 253 | 6 | 22 | 626 | 12 | 670 | 0.0 | 697 |
| MS.gene008379.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene008379.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene008379.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene008379.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene008379.t1 | AT5G53550 | 51.857 | 673 | 262 | 6 | 8 | 627 | 6 | 669 | 0.0 | 682 |
| MS.gene008379.t1 | AT5G24380 | 49.924 | 661 | 268 | 5 | 22 | 626 | 7 | 660 | 0.0 | 668 |
| MS.gene008379.t1 | AT5G41000 | 50.464 | 646 | 264 | 5 | 35 | 626 | 24 | 667 | 0.0 | 664 |
| MS.gene008379.t1 | AT4G24120 | 49.265 | 680 | 277 | 7 | 1 | 628 | 9 | 672 | 0.0 | 656 |
| MS.gene008379.t1 | AT5G41000 | 48.372 | 645 | 254 | 5 | 35 | 626 | 24 | 642 | 0.0 | 628 |
| MS.gene008379.t1 | AT5G53550 | 58.200 | 500 | 202 | 3 | 128 | 627 | 15 | 507 | 0.0 | 590 |
| MS.gene008379.t1 | AT5G41000 | 53.955 | 493 | 223 | 4 | 136 | 626 | 1 | 491 | 0.0 | 558 |
| MS.gene008379.t1 | AT5G45450 | 66.184 | 207 | 64 | 1 | 422 | 628 | 1 | 201 | 1.44e-90 | 280 |
Find 144 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTTCTGCCGGATTGTT+AGG | 0.216922 | 3.1:-53470466 | MS.gene008379:CDS |
| ATTATTGTGAGCCAAGTTAT+TGG | 0.221316 | 3.1:-53468217 | MS.gene008379:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.1:-53470625 | MS.gene008379:CDS |
| TACAACTTTGAGAAAGTTCT+TGG | 0.255627 | 3.1:-53468727 | MS.gene008379:CDS |
| TTTGGATCAGCTGTTGCTTC+TGG | 0.276008 | 3.1:-53467821 | MS.gene008379:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.1:-53467796 | MS.gene008379:CDS |
| TACTTGCTTCTTTGCTAGTT+TGG | 0.292733 | 3.1:+53469635 | None:intergenic |
| AGCGAAATATTGATTATATA+TGG | 0.302737 | 3.1:+53469187 | None:intergenic |
| GCGAACAAAATTAATAAATA+TGG | 0.307908 | 3.1:+53467997 | None:intergenic |
| TGGCTATTCTACAACGCTTT+TGG | 0.309037 | 3.1:-53468157 | MS.gene008379:CDS |
| TGATGTAATACCACTTTAAC+TGG | 0.322754 | 3.1:+53468491 | None:intergenic |
| GAAGCTTGATATTGTTTATA+TGG | 0.322854 | 3.1:-53467874 | MS.gene008379:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.1:+53470385 | None:intergenic |
| AAATTAGCCATCTTTGCTAT+TGG | 0.329826 | 3.1:-53468379 | MS.gene008379:CDS |
| CCATCTTTGCTATTGGTGCT+TGG | 0.330506 | 3.1:-53468372 | MS.gene008379:CDS |
| ATCAATATTTCGCTGTTGAT+TGG | 0.338595 | 3.1:-53469178 | MS.gene008379:CDS |
| GTTTGGCACCTTTAGATGTA+TGG | 0.359396 | 3.1:+53469652 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.1:-53468760 | MS.gene008379:CDS |
| CATCTTTGCTATTGGTGCTT+GGG | 0.364449 | 3.1:-53468371 | MS.gene008379:CDS |
| AGGGCTAAGGCTGATGCATT+TGG | 0.367842 | 3.1:-53467839 | MS.gene008379:CDS |
| TTTACAAACTTCCCCACATT+TGG | 0.369772 | 3.1:-53469531 | MS.gene008379:CDS |
| TTATATGGCAGAAGGTTGAT+AGG | 0.370237 | 3.1:-53467859 | MS.gene008379:CDS |
| CTTCTCCTTTAGCTTCTTGT+GGG | 0.372218 | 3.1:-53469595 | MS.gene008379:CDS |
| GCAAGAGCAAGAAAAGAGTT+TGG | 0.376106 | 3.1:+53467767 | None:intergenic |
| CAAGTTTATTCCTGTTCCTA+TGG | 0.376222 | 3.1:-53467951 | MS.gene008379:CDS |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.1:+53468321 | None:intergenic |
| TGATTGGTGGAATTCTTTCA+TGG | 0.388694 | 3.1:-53469162 | MS.gene008379:CDS |
| AAGTTGCTTCCAATGTAAAA+TGG | 0.389817 | 3.1:+53467917 | None:intergenic |
| TTCCGAAACATTGCAATACT+AGG | 0.400505 | 3.1:-53468085 | MS.gene008379:CDS |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.1:-53470505 | MS.gene008379:CDS |
| CACCTAGTATTGCAATGTTT+CGG | 0.403784 | 3.1:+53468083 | None:intergenic |
| TCTTGTGGGGCTTCTTCCAA+TGG | 0.405643 | 3.1:-53469581 | MS.gene008379:CDS |
| TTTGCTATTGGTGCTTGGGC+AGG | 0.409226 | 3.1:-53468367 | MS.gene008379:CDS |
| TGTTCCAACGTGGCAGAAAC+AGG | 0.410040 | 3.1:-53470587 | MS.gene008379:CDS |
| GTAGGTGGGAGAGGAGCATT+TGG | 0.412469 | 3.1:+53468640 | None:intergenic |
| ACTAGGTGTGGACGGATTCT+CGG | 0.412802 | 3.1:-53468068 | MS.gene008379:CDS |
| AAAACAAGTGCGTACGGTGC+AGG | 0.420051 | 3.1:+53468106 | None:intergenic |
| AGAGGAGCATTTGGATCATC+AGG | 0.423631 | 3.1:+53468649 | None:intergenic |
| GACAAGAATTTCATGCAAAT+AGG | 0.425369 | 3.1:+53467731 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.1:-53470668 | MS.gene008379:CDS |
| TATTCCTGTTCCTATGGCTA+TGG | 0.427311 | 3.1:-53467945 | MS.gene008379:CDS |
| GATTGGTGGAATTCTTTCAT+GGG | 0.431679 | 3.1:-53469161 | MS.gene008379:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.1:+53468581 | None:intergenic |
| TCTTCTCCTTTAGCTTCTTG+TGG | 0.441527 | 3.1:-53469596 | MS.gene008379:CDS |
| GTTGCTTCTGGTTTGATATG+TGG | 0.442292 | 3.1:-53467809 | MS.gene008379:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.448596 | 3.1:-53468403 | MS.gene008379:CDS |
| CTCATGCAAGACTTCAAAAC+AGG | 0.450675 | 3.1:-53468268 | MS.gene008379:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.1:-53470352 | MS.gene008379:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.1:-53469139 | MS.gene008379:CDS |
| CCATGGCAGTTCCAATAACT+TGG | 0.458984 | 3.1:+53468206 | None:intergenic |
| GGCAGAAACAGGTTACCGTT+AGG | 0.459884 | 3.1:-53470576 | MS.gene008379:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.1:-53469076 | MS.gene008379:CDS |
| ATGTTTCTGCCGGATTGTTA+GGG | 0.469509 | 3.1:-53470465 | MS.gene008379:CDS |
| CCAAGCACCAATAGCAAAGA+TGG | 0.470705 | 3.1:+53468372 | None:intergenic |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.1:-53469085 | MS.gene008379:CDS |
| AACAGTTTCCATACATCTAA+AGG | 0.479537 | 3.1:-53469660 | MS.gene008379:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.1:+53470687 | None:intergenic |
| CCCTCATGGTTCGCAATCGC+AGG | 0.486909 | 3.1:-53468565 | MS.gene008379:CDS |
| CTGCTTTGTTTGAGATCAGA+AGG | 0.490312 | 3.1:+53469094 | None:intergenic |
| AATATTTCGCTGTTGATTGG+TGG | 0.495302 | 3.1:-53469175 | MS.gene008379:CDS |
| ACTTTAACTGGTGGAAAATG+TGG | 0.498976 | 3.1:+53468503 | None:intergenic |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.1:-53469150 | MS.gene008379:CDS |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.1:+53467941 | None:intergenic |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.1:+53470378 | None:intergenic |
| GCAGAAACAGGTTACCGTTA+GGG | 0.508322 | 3.1:-53470575 | MS.gene008379:CDS |
| TTGTCGTCGAATGAAATTGT+AGG | 0.509132 | 3.1:+53468622 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.1:+53470688 | None:intergenic |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.1:-53470677 | MS.gene008379:CDS |
| CAAAACAGGTTACATGACAT+TGG | 0.515553 | 3.1:-53468254 | MS.gene008379:CDS |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.1:+53469690 | None:intergenic |
| ACCAAGTTGTTTGAGAAAGC+TGG | 0.516746 | 3.1:-53470421 | MS.gene008379:CDS |
| TTTGGTACTCTTGGTCAACC+TGG | 0.521145 | 3.1:-53468139 | MS.gene008379:CDS |
| CAGATTATGATTGTTGACTT+CGG | 0.523151 | 3.1:-53469723 | MS.gene008379:CDS |
| ACCAGCTTTCTCAAACAACT+TGG | 0.524027 | 3.1:+53470420 | None:intergenic |
| CAAGTTATTGGAACTGCCAT+GGG | 0.526561 | 3.1:-53468205 | MS.gene008379:CDS |
| CCTTCGTTGAATGTTTCTGC+CGG | 0.531085 | 3.1:-53470475 | MS.gene008379:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.532358 | 3.1:-53467896 | MS.gene008379:CDS |
| GATATTGTTTATATGGCAGA+AGG | 0.532514 | 3.1:-53467867 | MS.gene008379:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.1:-53469998 | MS.gene008379:intron |
| TTCACTGCCGGTGATGCTTG+TGG | 0.536196 | 3.1:-53469555 | MS.gene008379:CDS |
| GCTTGGGCAGGTGCAGCTAA+CGG | 0.539196 | 3.1:-53468355 | MS.gene008379:CDS |
| CCAAGTTATTGGAACTGCCA+TGG | 0.540066 | 3.1:-53468206 | MS.gene008379:CDS |
| AATGAAATTGTAGGTGGGAG+AGG | 0.543345 | 3.1:+53468631 | None:intergenic |
| GCTAACGGCGGTGTCCTAGC+CGG | 0.545554 | 3.1:-53468340 | MS.gene008379:CDS |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.1:+53470671 | None:intergenic |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.550561 | 3.1:-53470548 | MS.gene008379:CDS |
| GAAGCCCCACAAGAAGCTAA+AGG | 0.550595 | 3.1:+53469590 | None:intergenic |
| TATATGGCAGAAGGTTGATA+GGG | 0.551781 | 3.1:-53467858 | MS.gene008379:CDS |
| CTTTAACTGGTGGAAAATGT+GGG | 0.552788 | 3.1:+53468504 | None:intergenic |
| TGTAAATCCACAAGCATCAC+CGG | 0.553746 | 3.1:+53469548 | None:intergenic |
| AAACAAGTGCGTACGGTGCA+GGG | 0.554203 | 3.1:+53468107 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.1:+53468591 | None:intergenic |
| GCATTGCAAAAGGCTAATGC+GGG | 0.561842 | 3.1:+53468448 | None:intergenic |
| TGGCTCACAATAATTGATCT+CGG | 0.563132 | 3.1:+53468226 | None:intergenic |
| ATGGTTGTGGACTAACAGAT+TGG | 0.563504 | 3.1:-53468423 | MS.gene008379:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.1:+53468438 | None:intergenic |
| ATTGGCTTCGAGACCAAATG+TGG | 0.565976 | 3.1:+53469518 | None:intergenic |
| ATCTGTTAGTCCACAACCAT+AGG | 0.575557 | 3.1:+53468426 | None:intergenic |
| GGCATTGCAAAAGGCTAATG+CGG | 0.578668 | 3.1:+53468447 | None:intergenic |
| AAGAAGCAAGTACAAGCACT+TGG | 0.583235 | 3.1:-53469624 | MS.gene008379:CDS |
| TTCTCCTTTAGCTTCTTGTG+GGG | 0.585324 | 3.1:-53469594 | MS.gene008379:CDS |
| TCTGGTTTGATATGTGGAGA+TGG | 0.585954 | 3.1:-53467803 | MS.gene008379:CDS |
| GCAGAAGGTTGATAGGGCTA+AGG | 0.589889 | 3.1:-53467852 | MS.gene008379:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.1:+53467734 | None:intergenic |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.1:+53467935 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.1:-53470688 | MS.gene008379:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.1:-53468754 | MS.gene008379:CDS |
| CTGCGATTGCGAACCATGAG+GGG | 0.600720 | 3.1:+53468566 | None:intergenic |
| TCGTCGAATGAAATTGTAGG+TGG | 0.601326 | 3.1:+53468625 | None:intergenic |
| AAACATTGCAATACTAGGTG+TGG | 0.604006 | 3.1:-53468080 | MS.gene008379:CDS |
| GGTGCAGGGTATGCTGTACC+AGG | 0.605516 | 3.1:+53468121 | None:intergenic |
| TGTAATACCACTTTAACTGG+TGG | 0.608743 | 3.1:+53468494 | None:intergenic |
| ATTGGTGGAATTCTTTCATG+GGG | 0.611593 | 3.1:-53469160 | MS.gene008379:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.1:-53468579 | MS.gene008379:CDS |
| TGCTTTGTTTGAGATCAGAA+GGG | 0.617049 | 3.1:+53469095 | None:intergenic |
| TTTCGGAAAACAAGTGCGTA+CGG | 0.617609 | 3.1:+53468100 | None:intergenic |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.1:-53470683 | MS.gene008379:CDS |
| TGGGCAGGTGCAGCTAACGG+CGG | 0.620228 | 3.1:-53468352 | MS.gene008379:CDS |
| ACTCACAAATACTGCCCTAA+CGG | 0.620651 | 3.1:+53470561 | None:intergenic |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.1:+53468326 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+TGG | 0.621811 | 3.1:+53470583 | None:intergenic |
| CGGCGATATAACACATCCCA+TGG | 0.622349 | 3.1:+53468189 | None:intergenic |
| CCTGCGATTGCGAACCATGA+GGG | 0.627054 | 3.1:+53468565 | None:intergenic |
| CGTCGAATGAAATTGTAGGT+GGG | 0.643309 | 3.1:+53468626 | None:intergenic |
| AGTTAGTGTACCTTTCGGAG+TGG | 0.644340 | 3.1:+53469988 | None:intergenic |
| TTGGCTTCGAGACCAAATGT+GGG | 0.645218 | 3.1:+53469519 | None:intergenic |
| TTTAACTGGTGGAAAATGTG+GGG | 0.646034 | 3.1:+53468505 | None:intergenic |
| ATTGCAATACTAGGTGTGGA+CGG | 0.653404 | 3.1:-53468076 | MS.gene008379:CDS |
| AGTTGTTTGAGAAAGCTGGT+TGG | 0.654166 | 3.1:-53470417 | MS.gene008379:CDS |
| AAAACACGATGCAGAGTACG+AGG | 0.659959 | 3.1:+53468029 | None:intergenic |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.1:+53469680 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.1:+53470649 | None:intergenic |
| TTAACTGGTGGAAAATGTGG+GGG | 0.668117 | 3.1:+53468506 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.1:-53470504 | MS.gene008379:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.1:-53470644 | MS.gene008379:CDS |
| CCGGCAGAAACATTCAACGA+AGG | 0.690369 | 3.1:+53470475 | None:intergenic |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.1:+53468169 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.1:-53470632 | MS.gene008379:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.1:-53470337 | MS.gene008379:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.1:-53468325 | MS.gene008379:CDS |
| TGGCTTCGAGACCAAATGTG+GGG | 0.699777 | 3.1:+53469520 | None:intergenic |
| GCCTGCGATTGCGAACCATG+AGG | 0.704001 | 3.1:+53468564 | None:intergenic |
| TTCGGATTGACATATCCAAG+TGG | 0.715978 | 3.1:-53469705 | MS.gene008379:CDS |
| AAGGAACATCTGTTCCAACG+TGG | 0.742375 | 3.1:-53470597 | MS.gene008379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTAAAACTAAATGTT+TGG | + | chr3.1:53468671-53468690 | None:intergenic | 10.0% |
| !! | GCAAAATCAAATAATTAAAA+AGG | + | chr3.1:53468514-53468533 | None:intergenic | 15.0% |
| !! | TAAATGTTAGATAAAAGAAA+AGG | + | chr3.1:53469151-53469170 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.1:53469169-53469188 | MS.gene008379:CDS | 15.0% |
| !! | TTCTCTCATTAATAAAATAA+AGG | + | chr3.1:53468955-53468974 | None:intergenic | 15.0% |
| !! | ACTTGTTCTAATAACTATTA+GGG | + | chr3.1:53468174-53468193 | None:intergenic | 20.0% |
| !! | AGTCAAGTATTAAATTGAAA+TGG | + | chr3.1:53468128-53468147 | None:intergenic | 20.0% |
| !! | GCAATATTATCTAAAAAAGT+TGG | + | chr3.1:53469096-53469115 | None:intergenic | 20.0% |
| !! | GCGAACAAAATTAATAAATA+TGG | + | chr3.1:53470433-53470452 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAATAACTATT+AGG | + | chr3.1:53468175-53468194 | None:intergenic | 20.0% |
| !!! | AGCGAAATATTGATTATATA+TGG | + | chr3.1:53469243-53469262 | None:intergenic | 20.0% |
| !!! | TAGTTGATAATGTATTCTTT+TGG | - | chr3.1:53469605-53469624 | MS.gene008379:CDS | 20.0% |
| !!! | TGAATCGATTTTTAAAACAT+GGG | - | chr3.1:53468633-53468652 | MS.gene008379:CDS | 20.0% |
| !!! | TTGAAGGTTACATTTTATTA+AGG | + | chr3.1:53468477-53468496 | None:intergenic | 20.0% |
| !!! | TTGAATCGATTTTTAAAACA+TGG | - | chr3.1:53468632-53468651 | MS.gene008379:CDS | 20.0% |
| !!! | TTGTATTCTTTTTAAATCAC+AGG | - | chr3.1:53469639-53469658 | MS.gene008379:CDS | 20.0% |
| !!! | TTTTAGGTTTGAAAAAACAA+TGG | - | chr3.1:53469731-53469750 | MS.gene008379:intron | 20.0% |
| ! | AAAAAATTAACTCTGTTGCT+TGG | - | chr3.1:53468991-53469010 | MS.gene008379:intron | 25.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.1:53468241-53468260 | None:intergenic | 25.0% |
| ! | ATTGAAAACAAGTACAAAAC+TGG | - | chr3.1:53469539-53469558 | MS.gene008379:CDS | 25.0% |
| ! | CAAAGTATACTTACAAAAAG+TGG | + | chr3.1:53469458-53469477 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTTAAT+TGG | - | chr3.1:53469516-53469535 | MS.gene008379:CDS | 25.0% |
| ! | GAAAAATAGTAGTTTCTCAA+TGG | - | chr3.1:53469489-53469508 | MS.gene008379:intron | 25.0% |
| ! | GAAGCTTGATATTGTTTATA+TGG | - | chr3.1:53470553-53470572 | MS.gene008379:CDS | 25.0% |
| ! | TAATAAGTTAGTGTACCTTT+CGG | + | chr3.1:53468447-53468466 | None:intergenic | 25.0% |
| !! | ATTTACGTACATCTTTTGAT+TGG | + | chr3.1:53468930-53468949 | None:intergenic | 25.0% |
| !! | TAAAAAATTGACTCATGAGT+TGG | - | chr3.1:53468589-53468608 | MS.gene008379:CDS | 25.0% |
| !! | TTTAAATCACAGGTTTTCAT+AGG | - | chr3.1:53469649-53469668 | MS.gene008379:CDS | 25.0% |
| !!! | CACTTTTTGTAAGTATACTT+TGG | - | chr3.1:53469456-53469475 | MS.gene008379:intron | 25.0% |
| !!! | TTGTAAGTATACTTTGGAAT+TGG | - | chr3.1:53469462-53469481 | MS.gene008379:intron | 25.0% |
| AAAGAAAAACCCTAACAATC+CGG | + | chr3.1:53467974-53467993 | None:intergenic | 30.0% | |
| AACAATCATAATCTGCAACA+TGG | + | chr3.1:53468699-53468718 | None:intergenic | 30.0% | |
| AACAGTTTCCATACATCTAA+AGG | - | chr3.1:53468767-53468786 | MS.gene008379:CDS | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.1:53469052-53469071 | MS.gene008379:intron | 30.0% | |
| AACCTTCAACACTAGAATAT+AGG | - | chr3.1:53468488-53468507 | MS.gene008379:CDS | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.1:53470696-53470715 | None:intergenic | 30.0% | |
| AAGTTGCTTCCAATGTAAAA+TGG | + | chr3.1:53470513-53470532 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.1:53469546-53469565 | MS.gene008379:CDS | 30.0% | |
| ATCAATATTTCGCTGTTGAT+TGG | - | chr3.1:53469249-53469268 | MS.gene008379:intron | 30.0% | |
| ATTATTGTGAGCCAAGTTAT+TGG | - | chr3.1:53470210-53470229 | MS.gene008379:intron | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.1:53470699-53470718 | None:intergenic | 30.0% | |
| GATATTGTTTATATGGCAGA+AGG | - | chr3.1:53470560-53470579 | MS.gene008379:CDS | 30.0% | |
| TGATGTAATACCACTTTAAC+TGG | + | chr3.1:53469939-53469958 | None:intergenic | 30.0% | |
| ! | AAATTAGCCATCTTTGCTAT+TGG | - | chr3.1:53470048-53470067 | MS.gene008379:intron | 30.0% |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.1:53470501-53470520 | MS.gene008379:CDS | 30.0% |
| ! | TACAACTTTGAGAAAGTTCT+TGG | - | chr3.1:53469700-53469719 | MS.gene008379:CDS | 30.0% |
| ! | TATTAATTTTGTTCGCGACT+TGG | - | chr3.1:53470437-53470456 | MS.gene008379:CDS | 30.0% |
| !! | CAGATTATGATTGTTGACTT+CGG | - | chr3.1:53468704-53468723 | MS.gene008379:CDS | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.1:53468400-53468419 | MS.gene008379:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.1:53470531-53470550 | MS.gene008379:CDS | 30.0% |
| !!! | CGATTTTTAAAACATGGGAT+GGG | - | chr3.1:53468638-53468657 | MS.gene008379:CDS | 30.0% |
| !!! | GGAATTTGTTTTGCAATAGT+TGG | + | chr3.1:53468322-53468341 | None:intergenic | 30.0% |
| !!! | TCGATTTTTAAAACATGGGA+TGG | - | chr3.1:53468637-53468656 | MS.gene008379:CDS | 30.0% |
| AAACATTGCAATACTAGGTG+TGG | - | chr3.1:53470347-53470366 | MS.gene008379:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.1:53468052-53468071 | None:intergenic | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.1:53468359-53468378 | None:intergenic | 35.0% | |
| ACTTTAACTGGTGGAAAATG+TGG | + | chr3.1:53469927-53469946 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.1:53467781-53467800 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.1:53469673-53469692 | MS.gene008379:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.1:53469667-53469686 | MS.gene008379:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.1:53467922-53467941 | MS.gene008379:CDS | 35.0% | |
| ATTGGTGGAATTCTTTCATG+GGG | - | chr3.1:53469267-53469286 | MS.gene008379:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.1:53467879-53467898 | MS.gene008379:CDS | 35.0% | |
| CAAAACAGGTTACATGACAT+TGG | - | chr3.1:53470173-53470192 | MS.gene008379:intron | 35.0% | |
| CAAGTTTATTCCTGTTCCTA+TGG | - | chr3.1:53470476-53470495 | MS.gene008379:CDS | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.1:53469057-53469076 | None:intergenic | 35.0% | |
| CACCTAGTATTGCAATGTTT+CGG | + | chr3.1:53470347-53470366 | None:intergenic | 35.0% | |
| CTTTAACTGGTGGAAAATGT+GGG | + | chr3.1:53469926-53469945 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.1:53468361-53468380 | MS.gene008379:CDS | 35.0% | |
| GATTGGTGGAATTCTTTCAT+GGG | - | chr3.1:53469266-53469285 | MS.gene008379:intron | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.1:53467783-53467802 | MS.gene008379:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.1:53468795-53468814 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.1:53470261-53470280 | None:intergenic | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.1:53467923-53467942 | MS.gene008379:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.1:53470631-53470650 | MS.gene008379:CDS | 35.0% | |
| TGATTGGTGGAATTCTTTCA+TGG | - | chr3.1:53469265-53469284 | MS.gene008379:intron | 35.0% | |
| TGGCTCACAATAATTGATCT+CGG | + | chr3.1:53470204-53470223 | None:intergenic | 35.0% | |
| TGTAATACCACTTTAACTGG+TGG | + | chr3.1:53469936-53469955 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.1:53468365-53468384 | MS.gene008379:CDS | 35.0% | |
| TTCCGAAACATTGCAATACT+AGG | - | chr3.1:53470342-53470361 | MS.gene008379:CDS | 35.0% | |
| TTGTCGTCGAATGAAATTGT+AGG | + | chr3.1:53469808-53469827 | None:intergenic | 35.0% | |
| TTTAACTGGTGGAAAATGTG+GGG | + | chr3.1:53469925-53469944 | None:intergenic | 35.0% | |
| TTTACAAACTTCCCCACATT+TGG | - | chr3.1:53468896-53468915 | MS.gene008379:intron | 35.0% | |
| ! | AATATTTCGCTGTTGATTGG+TGG | - | chr3.1:53469252-53469271 | MS.gene008379:intron | 35.0% |
| ! | ACATTTTCCACCAGTTAAAG+TGG | - | chr3.1:53469926-53469945 | MS.gene008379:intron | 35.0% |
| ! | ATTTTTCTGCTACCTATGTG+GGG | - | chr3.1:53469202-53469221 | MS.gene008379:CDS | 35.0% |
| ! | GATTTTTCTGCTACCTATGT+GGG | - | chr3.1:53469201-53469220 | MS.gene008379:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.1:53467983-53468002 | MS.gene008379:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.1:53468035-53468054 | MS.gene008379:CDS | 35.0% |
| ! | TGATTTTTCTGCTACCTATG+TGG | - | chr3.1:53469200-53469219 | MS.gene008379:CDS | 35.0% |
| ! | TTATATGGCAGAAGGTTGAT+AGG | - | chr3.1:53470568-53470587 | MS.gene008379:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.1:53469839-53469858 | None:intergenic | 35.0% |
| !! | TATATGGCAGAAGGTTGATA+GGG | - | chr3.1:53470569-53470588 | MS.gene008379:CDS | 35.0% |
| !! | TGCTTTGTTTGAGATCAGAA+GGG | + | chr3.1:53469335-53469354 | None:intergenic | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.1:53469307-53469326 | MS.gene008379:intron | 35.0% |
| AAGAAGCAAGTACAAGCACT+TGG | - | chr3.1:53468803-53468822 | MS.gene008379:intron | 40.0% | |
| AATGAAATTGTAGGTGGGAG+AGG | + | chr3.1:53469799-53469818 | None:intergenic | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.1:53470495-53470514 | None:intergenic | 40.0% | |
| ACCAAGTTGTTTGAGAAAGC+TGG | - | chr3.1:53468006-53468025 | MS.gene008379:CDS | 40.0% | |
| ACCAGCTTTCTCAAACAACT+TGG | + | chr3.1:53468010-53468029 | None:intergenic | 40.0% | |
| ACTCACAAATACTGCCCTAA+CGG | + | chr3.1:53467869-53467888 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.1:53467803-53467822 | MS.gene008379:CDS | 40.0% | |
| AGTTGTTTGAGAAAGCTGGT+TGG | - | chr3.1:53468010-53468029 | MS.gene008379:CDS | 40.0% | |
| ATCTGTTAGTCCACAACCAT+AGG | + | chr3.1:53470004-53470023 | None:intergenic | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.1:53469849-53469868 | None:intergenic | 40.0% | |
| ATTGCAATACTAGGTGTGGA+CGG | - | chr3.1:53470351-53470370 | MS.gene008379:CDS | 40.0% | |
| CAAGTTATTGGAACTGCCAT+GGG | - | chr3.1:53470222-53470241 | MS.gene008379:intron | 40.0% | |
| CGTCGAATGAAATTGTAGGT+GGG | + | chr3.1:53469804-53469823 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.1:53469342-53469361 | MS.gene008379:intron | 40.0% | |
| CTCATGCAAGACTTCAAAAC+AGG | - | chr3.1:53470159-53470178 | MS.gene008379:intron | 40.0% | |
| GCAAAACAAATTCCAGAAGC+TGG | - | chr3.1:53468328-53468347 | MS.gene008379:CDS | 40.0% | |
| GCAAGAGCAAGAAAAGAGTT+TGG | + | chr3.1:53470663-53470682 | None:intergenic | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.1:53468355-53468374 | MS.gene008379:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.1:53468045-53468064 | None:intergenic | 40.0% | |
| GTTTGGCACCTTTAGATGTA+TGG | + | chr3.1:53468778-53468797 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.1:53470482-53470501 | MS.gene008379:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.1:53469848-53469867 | MS.gene008379:intron | 40.0% | |
| TCGTCGAATGAAATTGTAGG+TGG | + | chr3.1:53469805-53469824 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.1:53467811-53467830 | MS.gene008379:CDS | 40.0% | |
| TGTAAATCCACAAGCATCAC+CGG | + | chr3.1:53468882-53468901 | None:intergenic | 40.0% | |
| TTAACTGGTGGAAAATGTGG+GGG | + | chr3.1:53469924-53469943 | None:intergenic | 40.0% | |
| TTCGGATTGACATATCCAAG+TGG | - | chr3.1:53468722-53468741 | MS.gene008379:CDS | 40.0% | |
| TTTCGGAAAACAAGTGCGTA+CGG | + | chr3.1:53470330-53470349 | None:intergenic | 40.0% | |
| ! | AACTCTTTTCTTGCTCTTGC+TGG | - | chr3.1:53470663-53470682 | MS.gene008379:CDS | 40.0% |
| ! | AATGTTTCTGCCGGATTGTT+AGG | - | chr3.1:53467961-53467980 | MS.gene008379:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.1:53469992-53470011 | None:intergenic | 40.0% |
| ! | ATGGTTGTGGACTAACAGAT+TGG | - | chr3.1:53470004-53470023 | MS.gene008379:intron | 40.0% |
| ! | ATGTTTCTGCCGGATTGTTA+GGG | - | chr3.1:53467962-53467981 | MS.gene008379:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.1:53470032-53470051 | None:intergenic | 40.0% |
| ! | CTCTGCATCGTGTTTTTCTT+CGG | - | chr3.1:53470405-53470424 | MS.gene008379:CDS | 40.0% |
| ! | CTTCTCCTTTAGCTTCTTGT+GGG | - | chr3.1:53468832-53468851 | MS.gene008379:intron | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.1:53468414-53468433 | MS.gene008379:CDS | 40.0% |
| ! | GGCCTATATTCTAGTGTTGA+AGG | + | chr3.1:53468493-53468512 | None:intergenic | 40.0% |
| ! | GTTCTTGGCACAACTCTTTT+AGG | - | chr3.1:53469715-53469734 | MS.gene008379:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.1:53468750-53468769 | None:intergenic | 40.0% |
| ! | TACAACGCTTTTGGTACTCT+TGG | - | chr3.1:53470279-53470298 | MS.gene008379:intron | 40.0% |
| ! | TCTGGTTTGATATGTGGAGA+TGG | - | chr3.1:53470624-53470643 | MS.gene008379:CDS | 40.0% |
| ! | TCTTCTCCTTTAGCTTCTTG+TGG | - | chr3.1:53468831-53468850 | MS.gene008379:intron | 40.0% |
| ! | TGGCTATTCTACAACGCTTT+TGG | - | chr3.1:53470270-53470289 | MS.gene008379:intron | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.1:53470250-53470269 | MS.gene008379:intron | 40.0% |
| ! | TTCCAATGGTTTTTCACTGC+CGG | - | chr3.1:53468860-53468879 | MS.gene008379:intron | 40.0% |
| ! | TTCTCCTTTAGCTTCTTGTG+GGG | - | chr3.1:53468833-53468852 | MS.gene008379:intron | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.1:53470031-53470050 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.1:53469991-53470010 | MS.gene008379:intron | 40.0% |
| ! | TTTTTCTGCTACCTATGTGG+GGG | - | chr3.1:53469203-53469222 | MS.gene008379:CDS | 40.0% |
| !! | CATCTTTGCTATTGGTGCTT+GGG | - | chr3.1:53470056-53470075 | MS.gene008379:intron | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.1:53469300-53469319 | MS.gene008379:intron | 40.0% |
| !! | CTGCTTTGTTTGAGATCAGA+AGG | + | chr3.1:53469336-53469355 | None:intergenic | 40.0% |
| !! | CTTGCTTTGCTTGCTTTTGT+AGG | - | chr3.1:53468265-53468284 | MS.gene008379:CDS | 40.0% |
| !! | CTTTGCTTGCTTTTGTAGGT+GGG | - | chr3.1:53468269-53468288 | MS.gene008379:CDS | 40.0% |
| !! | GTTGCTTCTGGTTTGATATG+TGG | - | chr3.1:53470618-53470637 | MS.gene008379:CDS | 40.0% |
| !! | TTAGCCTTTTGCAATGCCTA+TGG | - | chr3.1:53469985-53470004 | MS.gene008379:intron | 40.0% |
| !!! | AATTTTGTTCGCGACTTGGT+TGG | - | chr3.1:53470441-53470460 | MS.gene008379:CDS | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.1:53469303-53469322 | None:intergenic | 40.0% |
| AAAACACGATGCAGAGTACG+AGG | + | chr3.1:53470401-53470420 | None:intergenic | 45.0% | |
| AAGGAACATCTGTTCCAACG+TGG | - | chr3.1:53467830-53467849 | MS.gene008379:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.1:53467795-53467814 | MS.gene008379:CDS | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.1:53469351-53469370 | MS.gene008379:intron | 45.0% | |
| AGTTAGTGTACCTTTCGGAG+TGG | + | chr3.1:53468442-53468461 | None:intergenic | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.1:53470489-53470508 | None:intergenic | 45.0% | |
| ATTCAAACATCGCTGCAACG+AGG | + | chr3.1:53468618-53468637 | None:intergenic | 45.0% | |
| CCAAGCACCAATAGCAAAGA+TGG | + | chr3.1:53470058-53470077 | None:intergenic | 45.0% | |
| CCAAGTTATTGGAACTGCCA+TGG | - | chr3.1:53470221-53470240 | MS.gene008379:intron | 45.0% | |
| CCATGGCAGTTCCAATAACT+TGG | + | chr3.1:53470224-53470243 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.1:53467802-53467821 | MS.gene008379:CDS | 45.0% | |
| GCAGAAACAGGTTACCGTTA+GGG | - | chr3.1:53467852-53467871 | MS.gene008379:CDS | 45.0% | |
| GCATTGCAAAAGGCTAATGC+GGG | + | chr3.1:53469982-53470001 | None:intergenic | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.1:53468090-53468109 | MS.gene008379:CDS | 45.0% | |
| GGCATTGCAAAAGGCTAATG+CGG | + | chr3.1:53469983-53470002 | None:intergenic | 45.0% | |
| TTGGCTTCGAGACCAAATGT+GGG | + | chr3.1:53468911-53468930 | None:intergenic | 45.0% | |
| TTTGGTACTCTTGGTCAACC+TGG | - | chr3.1:53470288-53470307 | MS.gene008379:intron | 45.0% | |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.1:53468075-53468094 | MS.gene008379:CDS | 45.0% |
| ! | ATTGGCTTCGAGACCAAATG+TGG | + | chr3.1:53468912-53468931 | None:intergenic | 45.0% |
| ! | CAGAGTACGAGGCAGTTTTT+CGG | + | chr3.1:53470390-53470409 | None:intergenic | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+CGG | - | chr3.1:53467952-53467971 | MS.gene008379:CDS | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.1:53469277-53469296 | MS.gene008379:intron | 45.0% |
| ! | TTTGGATCAGCTGTTGCTTC+TGG | - | chr3.1:53470606-53470625 | MS.gene008379:CDS | 45.0% |
| !! | AGAGGAGCATTTGGATCATC+AGG | + | chr3.1:53469781-53469800 | None:intergenic | 45.0% |
| !! | CCATCTTTGCTATTGGTGCT+TGG | - | chr3.1:53470055-53470074 | MS.gene008379:intron | 45.0% |
| !! | CTTGCTTTTGTAGGTGGGTT+TGG | - | chr3.1:53468274-53468293 | MS.gene008379:CDS | 45.0% |
| !! | GCTTTGCTTGCTTTTGTAGG+TGG | - | chr3.1:53468268-53468287 | MS.gene008379:CDS | 45.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.1:53469406-53469425 | MS.gene008379:intron | 5.0% |
| AAAACAAGTGCGTACGGTGC+AGG | + | chr3.1:53470324-53470343 | None:intergenic | 50.0% | |
| AAACAAGTGCGTACGGTGCA+GGG | + | chr3.1:53470323-53470342 | None:intergenic | 50.0% | |
| AGGGCTAAGGCTGATGCATT+TGG | - | chr3.1:53470588-53470607 | MS.gene008379:CDS | 50.0% | |
| CACCGGCAGTGAAAAACCAT+TGG | + | chr3.1:53468865-53468884 | None:intergenic | 50.0% | |
| CCGGCAGAAACATTCAACGA+AGG | + | chr3.1:53467955-53467974 | None:intergenic | 50.0% | |
| CGGCGATATAACACATCCCA+TGG | + | chr3.1:53470241-53470260 | None:intergenic | 50.0% | |
| GAAGCCCCACAAGAAGCTAA+AGG | + | chr3.1:53468840-53468859 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.1:53470109-53470128 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACCGTT+AGG | - | chr3.1:53467851-53467870 | MS.gene008379:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.1:53469217-53469236 | None:intergenic | 50.0% | |
| TCTTGTGGGGCTTCTTCCAA+TGG | - | chr3.1:53468846-53468865 | MS.gene008379:intron | 50.0% | |
| TGGCTTCGAGACCAAATGTG+GGG | + | chr3.1:53468910-53468929 | None:intergenic | 50.0% | |
| TGTTCCAACGTGGCAGAAAC+AGG | - | chr3.1:53467840-53467859 | MS.gene008379:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.1:53468429-53468448 | MS.gene008379:CDS | 50.0% | |
| ! | ACTAGGTGTGGACGGATTCT+CGG | - | chr3.1:53470359-53470378 | MS.gene008379:CDS | 50.0% |
| !! | GCAGAAGGTTGATAGGGCTA+AGG | - | chr3.1:53470575-53470594 | MS.gene008379:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+TGG | + | chr3.1:53467847-53467866 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.1:53470024-53470043 | MS.gene008379:intron | 50.0% |
| !! | TTTGCTATTGGTGCTTGGGC+AGG | - | chr3.1:53470060-53470079 | MS.gene008379:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.1:53470104-53470123 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.1:53467739-53467758 | MS.gene008379:CDS | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.1:53467742-53467761 | None:intergenic | 55.0% | |
| CCTGCGATTGCGAACCATGA+GGG | + | chr3.1:53469865-53469884 | None:intergenic | 55.0% | |
| CTGCGATTGCGAACCATGAG+GGG | + | chr3.1:53469864-53469883 | None:intergenic | 55.0% | |
| CTGCTACCTATGTGGGGGTT+GGG | - | chr3.1:53469208-53469227 | MS.gene008379:CDS | 55.0% | |
| TCATTGGCAGTGCCAGCTTC+TGG | + | chr3.1:53468343-53468362 | None:intergenic | 55.0% | |
| TCTGCTACCTATGTGGGGGT+TGG | - | chr3.1:53469207-53469226 | MS.gene008379:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.1:53468740-53468759 | None:intergenic | 55.0% | |
| TTCACTGCCGGTGATGCTTG+TGG | - | chr3.1:53468872-53468891 | MS.gene008379:intron | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.1:53470102-53470121 | MS.gene008379:intron | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.1:53469288-53469307 | MS.gene008379:intron | 55.0% |
| !! | GTAGGTGGGAGAGGAGCATT+TGG | + | chr3.1:53469790-53469809 | None:intergenic | 55.0% |
| CCCTCATGGTTCGCAATCGC+AGG | - | chr3.1:53469862-53469881 | MS.gene008379:intron | 60.0% | |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.1:53467743-53467762 | None:intergenic | 60.0% | |
| GCCTGCGATTGCGAACCATG+AGG | + | chr3.1:53469866-53469885 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCAGCTAA+CGG | - | chr3.1:53470072-53470091 | MS.gene008379:intron | 60.0% | |
| GGTGCAGGGTATGCTGTACC+AGG | + | chr3.1:53470309-53470328 | None:intergenic | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.1:53467744-53467763 | MS.gene008379:CDS | 60.0% | |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.1:53467750-53467769 | MS.gene008379:CDS | 65.0% | |
| GCTAACGGCGGTGTCCTAGC+CGG | - | chr3.1:53470087-53470106 | MS.gene008379:intron | 65.0% | |
| TGGGCAGGTGCAGCTAACGG+CGG | - | chr3.1:53470075-53470094 | MS.gene008379:intron | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.1:53467759-53467778 | MS.gene008379:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.1:53467759-53467778 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53467727 | 53470722 | 53467727 | ID=MS.gene008379 |
| chr3.1 | mRNA | 53467727 | 53470722 | 53467727 | ID=MS.gene008379.t1;Parent=MS.gene008379 |
| chr3.1 | exon | 53470338 | 53470722 | 53470338 | ID=MS.gene008379.t1.exon1;Parent=MS.gene008379.t1 |
| chr3.1 | CDS | 53470338 | 53470722 | 53470338 | ID=cds.MS.gene008379.t1;Parent=MS.gene008379.t1 |
| chr3.1 | exon | 53469999 | 53470015 | 53469999 | ID=MS.gene008379.t1.exon2;Parent=MS.gene008379.t1 |
| chr3.1 | CDS | 53469999 | 53470015 | 53469999 | ID=cds.MS.gene008379.t1;Parent=MS.gene008379.t1 |
| chr3.1 | exon | 53469510 | 53469742 | 53469510 | ID=MS.gene008379.t1.exon3;Parent=MS.gene008379.t1 |
| chr3.1 | CDS | 53469510 | 53469742 | 53469510 | ID=cds.MS.gene008379.t1;Parent=MS.gene008379.t1 |
| chr3.1 | exon | 53469069 | 53469258 | 53469069 | ID=MS.gene008379.t1.exon4;Parent=MS.gene008379.t1 |
| chr3.1 | CDS | 53469069 | 53469258 | 53469069 | ID=cds.MS.gene008379.t1;Parent=MS.gene008379.t1 |
| chr3.1 | exon | 53467727 | 53468788 | 53467727 | ID=MS.gene008379.t1.exon5;Parent=MS.gene008379.t1 |
| chr3.1 | CDS | 53467727 | 53468788 | 53467727 | ID=cds.MS.gene008379.t1;Parent=MS.gene008379.t1 |
| Gene Sequence |
| Protein sequence |
