Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008380.t1 | RHN68031.1 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.00E+00 | 1227.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008380.t1 | Q9SHY2 | 76.2 | 667 | 140 | 6 | 26 | 676 | 22 | 685 | 1.6e-296 | 1019.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008380.t1 | A0A396ITK6 | 89.9 | 691 | 56 | 3 | 1 | 678 | 1 | 690 | 0.0e+00 | 1227.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008380 | MS.gene57831 | PPI |
| MS.gene05216 | MS.gene008380 | PPI |
| MS.gene008380 | MS.gene37726 | PPI |
| MS.gene45566 | MS.gene008380 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008380.t1 | MTR_5g091600 | 87.879 | 693 | 58 | 5 | 1 | 678 | 1 | 682 | 0.0 | 1194 |
| MS.gene008380.t1 | MTR_3g063520 | 89.725 | 691 | 57 | 3 | 1 | 678 | 1 | 690 | 0.0 | 1176 |
| MS.gene008380.t1 | MTR_3g063490 | 84.029 | 695 | 91 | 4 | 1 | 676 | 1 | 694 | 0.0 | 1155 |
| MS.gene008380.t1 | MTR_6g077870 | 72.139 | 664 | 173 | 3 | 26 | 678 | 50 | 712 | 0.0 | 994 |
| MS.gene008380.t1 | MTR_6g077870 | 70.833 | 552 | 149 | 3 | 138 | 678 | 1 | 551 | 0.0 | 814 |
| MS.gene008380.t1 | MTR_7g028250 | 57.489 | 661 | 245 | 9 | 34 | 669 | 30 | 679 | 0.0 | 764 |
| MS.gene008380.t1 | MTR_3g092090 | 54.697 | 660 | 275 | 6 | 20 | 663 | 12 | 663 | 0.0 | 737 |
| MS.gene008380.t1 | MTR_3g092090 | 53.523 | 667 | 274 | 7 | 2 | 652 | 6 | 652 | 0.0 | 720 |
| MS.gene008380.t1 | MTR_1g007580 | 51.407 | 675 | 295 | 9 | 19 | 666 | 4 | 672 | 0.0 | 702 |
| MS.gene008380.t1 | MTR_0312s0020 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene008380.t1 | MTR_1g007540 | 51.131 | 663 | 301 | 7 | 20 | 666 | 17 | 672 | 0.0 | 699 |
| MS.gene008380.t1 | MTR_1g077840 | 50.453 | 662 | 305 | 7 | 20 | 665 | 25 | 679 | 0.0 | 698 |
| MS.gene008380.t1 | MTR_5g091615 | 88.125 | 160 | 19 | 0 | 515 | 674 | 59 | 218 | 1.96e-89 | 281 |
| MS.gene008380.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 207 | 442 | 4 | 235 | 1.45e-80 | 256 |
| MS.gene008380.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.63e-32 | 120 |
| MS.gene008380.t1 | MTR_2g083230 | 82.609 | 46 | 5 | 1 | 129 | 171 | 34 | 79 | 4.76e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008380.t1 | AT1G65730 | 75.893 | 672 | 141 | 7 | 21 | 676 | 19 | 685 | 0.0 | 1036 |
| MS.gene008380.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene008380.t1 | AT3G17650 | 71.429 | 665 | 173 | 4 | 29 | 676 | 46 | 710 | 0.0 | 949 |
| MS.gene008380.t1 | AT1G48370 | 70.871 | 666 | 176 | 4 | 29 | 676 | 55 | 720 | 0.0 | 931 |
| MS.gene008380.t1 | AT3G27020 | 57.357 | 666 | 263 | 6 | 23 | 669 | 13 | 676 | 0.0 | 768 |
| MS.gene008380.t1 | AT1G48370 | 69.479 | 557 | 152 | 4 | 138 | 676 | 1 | 557 | 0.0 | 756 |
| MS.gene008380.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene008380.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene008380.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene008380.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene008380.t1 | AT5G53550 | 55.638 | 674 | 272 | 8 | 8 | 664 | 6 | 669 | 0.0 | 743 |
| MS.gene008380.t1 | AT5G41000 | 54.799 | 646 | 273 | 5 | 35 | 663 | 24 | 667 | 0.0 | 727 |
| MS.gene008380.t1 | AT4G24120 | 52.941 | 680 | 289 | 7 | 1 | 665 | 9 | 672 | 0.0 | 724 |
| MS.gene008380.t1 | AT5G24380 | 52.959 | 659 | 288 | 6 | 22 | 663 | 7 | 660 | 0.0 | 712 |
| MS.gene008380.t1 | AT5G41000 | 52.632 | 646 | 262 | 6 | 35 | 663 | 24 | 642 | 0.0 | 686 |
| MS.gene008380.t1 | AT5G53550 | 58.058 | 515 | 198 | 4 | 160 | 664 | 1 | 507 | 0.0 | 602 |
| MS.gene008380.t1 | AT5G41000 | 53.955 | 493 | 214 | 4 | 182 | 663 | 1 | 491 | 0.0 | 553 |
| MS.gene008380.t1 | AT5G45450 | 65.138 | 218 | 70 | 1 | 459 | 676 | 1 | 212 | 1.71e-95 | 294 |
Find 160 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 3.1:-53410371 | MS.gene008380:CDS |
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.1:-53410801 | MS.gene008380:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.1:-53408281 | MS.gene008380:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.1:-53409122 | MS.gene008380:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.1:-53408102 | MS.gene008380:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.1:-53410960 | MS.gene008380:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.1:-53408624 | MS.gene008380:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.1:-53408411 | MS.gene008380:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.1:-53409137 | MS.gene008380:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.1:-53408203 | MS.gene008380:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.1:+53409599 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.1:+53409589 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.1:-53408972 | MS.gene008380:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.1:+53410720 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.1:-53410810 | MS.gene008380:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.1:-53408786 | MS.gene008380:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.1:-53409574 | MS.gene008380:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.1:-53408779 | MS.gene008380:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.1:-53408266 | MS.gene008380:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.1:+53408324 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.1:-53409170 | MS.gene008380:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.1:-53409921 | MS.gene008380:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.1:-53408246 | MS.gene008380:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.1:-53409103 | MS.gene008380:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 3.1:-53410473 | MS.gene008380:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.1:+53408138 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.1:-53408564 | MS.gene008380:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.1:+53409047 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.1:+53408728 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 3.1:+53408633 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 3.1:-53410416 | MS.gene008380:CDS |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.1:-53409148 | MS.gene008380:CDS |
| CTTGCTTGTGTAGGTGGGTT+TGG | 0.399991 | 3.1:-53410488 | MS.gene008380:intron |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.1:-53409149 | MS.gene008380:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.1:+53410042 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.1:-53410840 | MS.gene008380:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.1:-53408774 | MS.gene008380:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.1:+53408507 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.1:-53410922 | MS.gene008380:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.1:+53409506 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.1:-53408778 | MS.gene008380:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 3.1:-53410410 | MS.gene008380:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.1:-53408259 | MS.gene008380:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.1:-53408675 | MS.gene008380:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.1:-53410911 | MS.gene008380:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.1:+53408513 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.1:-53411003 | MS.gene008380:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.1:-53408810 | MS.gene008380:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.1:+53408988 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.1:-53410910 | MS.gene008380:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 3.1:+53410415 | None:intergenic |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.1:-53410800 | MS.gene008380:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.1:+53408613 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.1:-53408546 | MS.gene008380:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.1:-53409573 | MS.gene008380:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.1:-53408228 | MS.gene008380:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.1:-53410687 | MS.gene008380:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.1:-53408358 | MS.gene008380:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.1:-53409551 | MS.gene008380:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 3.1:-53410406 | MS.gene008380:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.1:-53408492 | MS.gene008380:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.1:-53409488 | MS.gene008380:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.1:+53408779 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.1:+53410755 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.1:-53408613 | MS.gene008380:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.1:-53410809 | MS.gene008380:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.1:-53409497 | MS.gene008380:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.1:-53409590 | MS.gene008380:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.1:+53411022 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.1:-53408555 | MS.gene008380:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.1:+53408911 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.1:-53409916 | MS.gene008380:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.1:+53408898 | None:intergenic |
| CCAAATATTGCAAAACAAGC+TGG | 0.494078 | 3.1:-53410443 | MS.gene008380:CDS |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.1:-53408612 | MS.gene008380:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.1:+53409055 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.1:-53408762 | MS.gene008380:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.1:-53409562 | MS.gene008380:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.1:+53408209 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.1:+53408348 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.1:-53408274 | MS.gene008380:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.1:-53408303 | MS.gene008380:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.1:+53410713 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.1:+53411023 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.1:-53408352 | MS.gene008380:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.1:-53411012 | MS.gene008380:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.1:+53409030 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.1:+53410080 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.1:-53408747 | MS.gene008380:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.1:-53408265 | MS.gene008380:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.1:+53408404 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.1:+53408923 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.1:+53408626 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.1:-53408216 | MS.gene008380:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.1:-53410342 | MS.gene008380:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.1:-53409587 | MS.gene008380:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.1:+53408359 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.1:-53408835 | MS.gene008380:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.1:-53408393 | MS.gene008380:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.1:-53408502 | MS.gene008380:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.1:+53409038 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.1:-53410756 | MS.gene008380:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.1:+53408410 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.1:+53411006 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.1:+53408855 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.1:+53409908 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.1:+53408998 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.1:-53409945 | MS.gene008380:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.1:-53408830 | MS.gene008380:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.1:-53410883 | MS.gene008380:CDS |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.1:+53408845 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.1:+53408519 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.1:-53410050 | MS.gene008380:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.1:-53409572 | MS.gene008380:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.1:+53408514 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.1:+53409029 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.1:+53408174 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.1:+53408528 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.1:+53408973 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.1:+53408833 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.1:+53408912 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.1:-53408661 | MS.gene008380:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.1:+53408141 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.1:-53408118 | MS.gene008380:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.1:+53408342 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.1:-53411023 | MS.gene008380:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.1:-53409164 | MS.gene008380:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.1:-53408487 | MS.gene008380:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.1:+53408972 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.1:-53408210 | MS.gene008380:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.1:-53410916 | MS.gene008380:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.1:-53408986 | MS.gene008380:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.1:-53411018 | MS.gene008380:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.1:-53410752 | MS.gene008380:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.1:+53408733 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.1:+53409507 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.1:+53408901 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.1:-53408483 | MS.gene008380:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.1:+53409909 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.1:+53408913 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.1:+53408917 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.1:-53408759 | MS.gene008380:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.1:+53410070 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.1:+53410984 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.1:+53408971 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.1:+53410332 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.1:-53410839 | MS.gene008380:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.1:-53410979 | MS.gene008380:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.1:+53408499 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.1:-53410095 | MS.gene008380:CDS |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.1:+53408576 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.1:-53410967 | MS.gene008380:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 3.1:-53410672 | MS.gene008380:intron |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.1:-53408732 | MS.gene008380:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.1:+53408500 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.1:+53410810 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.1:+53409910 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.1:+53409031 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.1:+53410918 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.1:-53410932 | MS.gene008380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.1:53409279-53409298 | MS.gene008380:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.1:53408988-53409007 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.1:53409460-53409479 | MS.gene008380:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.1:53409751-53409770 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.1:53409442-53409461 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.1:53410027-53410046 | MS.gene008380:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.1:53409534-53409553 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.1:53408543-53408562 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.1:53408542-53408561 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.1:53409750-53409769 | MS.gene008380:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.1:53408848-53408867 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.1:53408873-53408892 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.1:53408609-53408628 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.1:53409810-53409829 | MS.gene008380:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.1:53409900-53409919 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.1:53410849-53410868 | MS.gene008380:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.1:53408886-53408905 | MS.gene008380:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.1:53408869-53408888 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.1:53408930-53408949 | MS.gene008380:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.1:53408929-53408948 | MS.gene008380:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.1:53410686-53410705 | MS.gene008380:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.1:53409012-53409031 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.1:53409338-53409357 | MS.gene008380:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.1:53410992-53411011 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.1:53410809-53410828 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.1:53409839-53409858 | MS.gene008380:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.1:53409540-53409559 | MS.gene008380:CDS | 30.0% | |
| AGTCAAGTATTAAACTGAAG+TGG | + | chr3.1:53408496-53408515 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.1:53410995-53411014 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.1:53410856-53410875 | MS.gene008380:CDS | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.1:53409832-53409851 | MS.gene008380:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.1:53408868-53408887 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.1:53409932-53409951 | MS.gene008380:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.1:53410797-53410816 | MS.gene008380:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.1:53410686-53410705 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.1:53409942-53409961 | MS.gene008380:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.1:53408806-53408825 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.1:53409898-53409917 | MS.gene008380:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.1:53408759-53408778 | MS.gene008380:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.1:53410827-53410846 | MS.gene008380:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.1:53409878-53409897 | MS.gene008380:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.1:53410344-53410363 | MS.gene008380:CDS | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.1:53409080-53409099 | MS.gene008380:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.1:53408420-53408439 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.1:53410507-53410526 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.1:53409543-53409562 | MS.gene008380:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.1:53408718-53408737 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.1:53410723-53410742 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.1:53409544-53409563 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.1:53408149-53408168 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.1:53409966-53409985 | MS.gene008380:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.1:53409960-53409979 | MS.gene008380:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.1:53408290-53408309 | MS.gene008380:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.1:53410506-53410525 | MS.gene008380:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.1:53408247-53408266 | MS.gene008380:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.1:53410469-53410488 | MS.gene008380:CDS | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.1:53410772-53410791 | MS.gene008380:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.1:53410518-53410537 | MS.gene008380:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.1:53409343-53409362 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.1:53410774-53410793 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.1:53408687-53408706 | MS.gene008380:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.1:53410455-53410474 | MS.gene008380:CDS | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.1:53409331-53409350 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.1:53408720-53408739 | MS.gene008380:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.1:53410729-53410748 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.1:53409982-53410001 | MS.gene008380:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.1:53408151-53408170 | MS.gene008380:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.1:53409108-53409127 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.1:53410557-53410576 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.1:53410638-53410657 | MS.gene008380:intron | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.1:53408291-53408310 | MS.gene008380:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.1:53410927-53410946 | MS.gene008380:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.1:53410235-53410254 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.1:53408724-53408743 | MS.gene008380:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.1:53409035-53409054 | MS.gene008380:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.1:53410221-53410240 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.1:53409493-53409512 | MS.gene008380:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.1:53409492-53409511 | MS.gene008380:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.1:53408351-53408370 | MS.gene008380:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.1:53408403-53408422 | MS.gene008380:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.1:53409993-53410012 | MS.gene008380:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.1:53409491-53409510 | MS.gene008380:CDS | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.1:53410864-53410883 | MS.gene008380:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.1:53410135-53410154 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.1:53409116-53409135 | MS.gene008380:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.1:53411028-53411047 | MS.gene008380:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.1:53410865-53410884 | MS.gene008380:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.1:53409598-53409617 | MS.gene008380:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.1:53409243-53409262 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.1:53408690-53408709 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.1:53408935-53408954 | MS.gene008380:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.1:53409145-53409164 | MS.gene008380:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.1:53408934-53408953 | MS.gene008380:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.1:53409144-53409163 | MS.gene008380:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.1:53409146-53409165 | MS.gene008380:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.1:53410643-53410662 | MS.gene008380:intron | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.1:53410791-53410810 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.1:53410633-53410652 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.1:53408171-53408190 | MS.gene008380:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.1:53409327-53409346 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.1:53409558-53409577 | MS.gene008380:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.1:53410145-53410164 | None:intergenic | 40.0% | |
| ATTTGCTTGCTTGTGTAGGT+GGG | - | chr3.1:53408637-53408656 | MS.gene008380:CDS | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.1:53410517-53410536 | MS.gene008380:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.1:53410520-53410539 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.1:53409633-53409652 | MS.gene008380:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.1:53410222-53410241 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.1:53410210-53410229 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.1:53409153-53409172 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.1:53409557-53409576 | MS.gene008380:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.1:53408714-53408733 | MS.gene008380:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.1:53408413-53408432 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.1:53410008-53410027 | MS.gene008380:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.1:53410634-53410653 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.1:53410778-53410797 | MS.gene008380:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.1:53410144-53410163 | MS.gene008380:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.1:53410924-53410943 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.1:53408179-53408198 | MS.gene008380:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.1:53409556-53409575 | MS.gene008380:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.1:53410566-53410585 | MS.gene008380:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.1:53410500-53410519 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.1:53410232-53410251 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.1:53410220-53410239 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.1:53409185-53409204 | MS.gene008380:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.1:53409209-53409228 | MS.gene008380:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.1:53408329-53408348 | MS.gene008380:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.1:53410288-53410307 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.1:53408330-53408349 | MS.gene008380:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.1:53410328-53410347 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.1:53409178-53409197 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.1:53408321-53408340 | MS.gene008380:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.1:53408773-53408792 | MS.gene008380:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.1:53409981-53410000 | MS.gene008380:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.1:53409063-53409082 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.1:53410222-53410241 | MS.gene008380:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.1:53410103-53410122 | None:intergenic | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.1:53410546-53410565 | MS.gene008380:intron | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.1:53410104-53410123 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.1:53410327-53410346 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.1:53410287-53410306 | MS.gene008380:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.1:53409159-53409178 | MS.gene008380:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.1:53409494-53409513 | MS.gene008380:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.1:53409591-53409610 | MS.gene008380:CDS | 40.0% |
| !! | CTTGATTTGCTTGCTTGTGT+AGG | - | chr3.1:53408633-53408652 | MS.gene008380:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.1:53409626-53409645 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.1:53409594-53409613 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.1:53409214-53409233 | MS.gene008380:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.1:53408198-53408217 | MS.gene008380:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.1:53410737-53410756 | MS.gene008380:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.1:53408163-53408182 | MS.gene008380:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.1:53408374-53408393 | MS.gene008380:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.1:53408378-53408397 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.1:53409642-53409661 | MS.gene008380:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.1:53410884-53410903 | MS.gene008380:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.1:53408378-53408397 | MS.gene008380:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.1:53410785-53410804 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.1:53409225-53409244 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.1:53410300-53410319 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.1:53410647-53410666 | MS.gene008380:intron | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.1:53408323-53408342 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.1:53408170-53408189 | MS.gene008380:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.1:53410959-53410978 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.1:53408220-53408239 | MS.gene008380:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | - | chr3.1:53408458-53408477 | MS.gene008380:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.1:53411012-53411031 | MS.gene008380:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.1:53409091-53409110 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.1:53410575-53410594 | MS.gene008380:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.1:53408214-53408233 | MS.gene008380:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.1:53409224-53409243 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.1:53408801-53408820 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.1:53410095-53410114 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.1:53408443-53408462 | MS.gene008380:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.1:53410959-53410978 | MS.gene008380:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.1:53410300-53410319 | MS.gene008380:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.1:53410352-53410371 | MS.gene008380:CDS | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.1:53408320-53408339 | MS.gene008380:CDS | 45.0% |
| ! | GATTTGCTTGCTTGTGTAGG+TGG | - | chr3.1:53408636-53408655 | MS.gene008380:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.1:53408657-53408676 | MS.gene008380:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.1:53410102-53410121 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.1:53410920-53410939 | MS.gene008380:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.1:53410295-53410314 | MS.gene008380:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.1:53409568-53409587 | MS.gene008380:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.1:53410281-53410300 | MS.gene008380:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.1:53409627-53409646 | None:intergenic | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.1:53410078-53410097 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.1:53410871-53410890 | MS.gene008380:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.1:53410719-53410738 | MS.gene008380:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.1:53410626-53410645 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.1:53409268-53409287 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.1:53409697-53409716 | MS.gene008380:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.1:53409223-53409242 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.1:53410354-53410373 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.1:53410161-53410180 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.1:53410628-53410647 | MS.gene008380:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.1:53410160-53410179 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.1:53410216-53410235 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.1:53410405-53410424 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.1:53410278-53410297 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.1:53408219-53408238 | MS.gene008380:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.1:53409508-53409527 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.1:53408208-53408227 | MS.gene008380:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.1:53408788-53408807 | MS.gene008380:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.1:53410584-53410603 | MS.gene008380:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.1:53410902-53410921 | MS.gene008380:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.1:53410351-53410370 | MS.gene008380:CDS | 50.0% |
| ! | CTTGCTTGTGTAGGTGGGTT+TGG | - | chr3.1:53408642-53408661 | MS.gene008380:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.1:53410914-53410933 | MS.gene008380:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.1:53408215-53408234 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.1:53410320-53410339 | MS.gene008380:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.1:53410400-53410419 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.1:53408107-53408126 | MS.gene008380:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.1:53410158-53410177 | MS.gene008380:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.1:53408110-53408129 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.1:53409499-53409518 | MS.gene008380:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.1:53410162-53410181 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.1:53409498-53409517 | MS.gene008380:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.1:53409053-53409072 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.1:53410398-53410417 | MS.gene008380:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.1:53410701-53410720 | MS.gene008380:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.1:53409579-53409598 | MS.gene008380:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.1:53410356-53410375 | MS.gene008380:CDS | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.1:53410619-53410638 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.1:53410086-53410105 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.1:53410620-53410639 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.1:53408111-53408130 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.1:53410368-53410387 | MS.gene008380:CDS | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.1:53410605-53410624 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.1:53410383-53410402 | MS.gene008380:CDS | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.1:53408112-53408131 | MS.gene008380:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.1:53410614-53410633 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.1:53408118-53408137 | MS.gene008380:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.1:53410371-53410390 | MS.gene008380:CDS | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.1:53408127-53408146 | MS.gene008380:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.1:53408127-53408146 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53408095 | 53411057 | 53408095 | ID=MS.gene008380 |
| chr3.1 | mRNA | 53408095 | 53411057 | 53408095 | ID=MS.gene008380.t1;Parent=MS.gene008380 |
| chr3.1 | exon | 53410673 | 53411057 | 53410673 | ID=MS.gene008380.t1.exon1;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53410673 | 53411057 | 53410673 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| chr3.1 | exon | 53410343 | 53410497 | 53410343 | ID=MS.gene008380.t1.exon2;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53410343 | 53410497 | 53410343 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| chr3.1 | exon | 53410051 | 53410132 | 53410051 | ID=MS.gene008380.t1.exon3;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53410051 | 53410132 | 53410051 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| chr3.1 | exon | 53409900 | 53410020 | 53409900 | ID=MS.gene008380.t1.exon4;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53409900 | 53410020 | 53409900 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| chr3.1 | exon | 53409481 | 53409670 | 53409481 | ID=MS.gene008380.t1.exon5;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53409481 | 53409670 | 53409481 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| chr3.1 | exon | 53408095 | 53409198 | 53408095 | ID=MS.gene008380.t1.exon6;Parent=MS.gene008380.t1 |
| chr3.1 | CDS | 53408095 | 53409198 | 53408095 | ID=cds.MS.gene008380.t1;Parent=MS.gene008380.t1 |
| Gene Sequence |
| Protein sequence |
