Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008784.t1 | AET03441.2 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 1.50E-179 | 638.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008784.t1 | Q8LGI3 | 69.0 | 323 | 93 | 3 | 1 | 322 | 1 | 317 | 2.5e-122 | 439.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008784.t1 | G7L724 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 1.1e-179 | 638.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40797 | MS.gene008784 | PPI |
| MS.gene008784 | MS.gene44181 | PPI |
| MS.gene005307 | MS.gene008784 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008784.t1 | MTR_8g070640 | 99.691 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 0.0 | 665 |
| MS.gene008784.t1 | MTR_1g045065 | 40.714 | 280 | 164 | 2 | 12 | 291 | 11 | 288 | 2.57e-74 | 231 |
| MS.gene008784.t1 | MTR_1g045065 | 38.017 | 242 | 147 | 3 | 1 | 242 | 1 | 239 | 2.33e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008784.t1 | AT1G30825 | 69.040 | 323 | 93 | 3 | 1 | 322 | 1 | 317 | 9.73e-165 | 461 |
| MS.gene008784.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 3.06e-71 | 223 |
| MS.gene008784.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 1.34e-70 | 224 |
| MS.gene008784.t1 | AT2G33385 | 36.986 | 292 | 181 | 3 | 1 | 291 | 1 | 290 | 3.29e-70 | 221 |
| MS.gene008784.t1 | AT2G33385 | 35.644 | 303 | 183 | 4 | 1 | 302 | 1 | 292 | 1.16e-66 | 213 |
Find 76 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTGTCCGATCCAGTTT+TGG | 0.217961 | 8.1:-34293702 | None:intergenic |
| TTCTGTTTCAGTATTGAAAA+AGG | 0.272592 | 8.1:+34289118 | MS.gene008784:intron |
| TAGAAATGTTGCTCCGGATA+TGG | 0.274270 | 8.1:+34291562 | MS.gene008784:CDS |
| TCTTGCAACTTCATTCTTGC+AGG | 0.282801 | 8.1:+34293266 | MS.gene008784:CDS |
| TGGCAGTCTTGTGCAAATTC+TGG | 0.294029 | 8.1:+34290042 | MS.gene008784:CDS |
| TTTGTATGTGGACTTCCTTT+TGG | 0.298544 | 8.1:+34289992 | MS.gene008784:CDS |
| ACAGATAGCAAGAAAATATT+AGG | 0.300457 | 8.1:-34289938 | None:intergenic |
| TCGTGTGGAGTCTTTGATTC+AGG | 0.327828 | 8.1:+34294893 | MS.gene008784:CDS |
| ATAATACCCCTCCTTGTTCA+TGG | 0.331553 | 8.1:+34293490 | MS.gene008784:CDS |
| AATGCAGGATTTGTATCATT+TGG | 0.336445 | 8.1:+34293567 | MS.gene008784:CDS |
| TGCAGCTTTGATTGCTTCAA+TGG | 0.339557 | 8.1:-34290017 | None:intergenic |
| TTCTTTGAACTCTCAGGATC+TGG | 0.345649 | 8.1:-34297125 | None:intergenic |
| TCATGTTGAAGGCCCAAAAC+TGG | 0.365625 | 8.1:+34293689 | MS.gene008784:CDS |
| AGAGCAAAGACAAGCACTTT+TGG | 0.382841 | 8.1:+34291469 | MS.gene008784:intron |
| GTAGATACTCCTTTCAGTTC+CGG | 0.383827 | 8.1:-34293528 | None:intergenic |
| CTATGTTAGTTATCATGTTA+AGG | 0.387046 | 8.1:+34293746 | MS.gene008784:CDS |
| CCGAAGGATTTATGCATACT+AGG | 0.392538 | 8.1:+34294862 | MS.gene008784:CDS |
| ATCTTCCCTCGTCATGTTGA+AGG | 0.393552 | 8.1:+34293678 | MS.gene008784:CDS |
| CAAAACTGGATCGGACAGTA+TGG | 0.412013 | 8.1:+34293703 | MS.gene008784:CDS |
| CGATGTCAGATATCACATTC+AGG | 0.427268 | 8.1:+34289174 | MS.gene008784:CDS |
| TGGTAAAAGTAGCATCAGTA+AGG | 0.458645 | 8.1:+34291489 | MS.gene008784:CDS |
| ATCGTTGCCTACTCCATCTT+CGG | 0.458816 | 8.1:+34289961 | MS.gene008784:CDS |
| GAAGCAATCAAAGCTGCATA+TGG | 0.481422 | 8.1:+34290022 | MS.gene008784:CDS |
| GTCGAAGCCAGGCGTACAGC+TGG | 0.483399 | 8.1:+34293462 | MS.gene008784:CDS |
| ATTAAGTCCAGCTGTACGCC+TGG | 0.485840 | 8.1:-34293469 | None:intergenic |
| ACTCCTTTCAGTTCCGGTGG+TGG | 0.485924 | 8.1:-34293522 | None:intergenic |
| TCGTCCTTGGTGCACCACTA+AGG | 0.490974 | 8.1:+34291516 | MS.gene008784:CDS |
| CCTAGTATGCATAAATCCTT+CGG | 0.491877 | 8.1:-34294862 | None:intergenic |
| GCGTTGAACTCGATCACCAC+TGG | 0.492167 | 8.1:+34289140 | MS.gene008784:CDS |
| TTTAGGAATTTGTCGAAGCC+AGG | 0.492797 | 8.1:+34293451 | MS.gene008784:intron |
| TGCTTCTAGAAATGTTGCTC+CGG | 0.496839 | 8.1:+34291556 | MS.gene008784:CDS |
| CGTCCTTGGTGCACCACTAA+GGG | 0.507682 | 8.1:+34291517 | MS.gene008784:CDS |
| TCAAAGGTTCCTGCAAATCA+AGG | 0.510475 | 8.1:+34290109 | MS.gene008784:CDS |
| GCAACAAGTGGATCCATATC+CGG | 0.514116 | 8.1:-34291575 | None:intergenic |
| TCAGTAAGGGAGGTCGTCCT+TGG | 0.514232 | 8.1:+34291503 | MS.gene008784:CDS |
| CTGAAGCAAGAATCTAGAAT+GGG | 0.518291 | 8.1:-34288987 | None:intergenic |
| TGCAAATTCTGGATCCACCT+AGG | 0.525594 | 8.1:+34290053 | MS.gene008784:CDS |
| GCAAGAATCTAGAATGGGAC+TGG | 0.526581 | 8.1:-34288982 | None:intergenic |
| TCTGAAGCAAGAATCTAGAA+TGG | 0.526800 | 8.1:-34288988 | None:intergenic |
| ATTGCTTCAATGGCTCCAAA+AGG | 0.535755 | 8.1:-34290007 | None:intergenic |
| ATCGAATCATTGAATCTCAT+AGG | 0.537796 | 8.1:-34293234 | None:intergenic |
| TACTAGGATGCGTCGTCGTG+TGG | 0.540037 | 8.1:+34294878 | MS.gene008784:CDS |
| CTTAACATGATAACTAACAT+AGG | 0.549462 | 8.1:-34293745 | None:intergenic |
| TGCTCTTGTTCATCGACCAA+AGG | 0.549781 | 8.1:+34291595 | MS.gene008784:CDS |
| TATTTGTAACAGTGCTCCGA+AGG | 0.554094 | 8.1:+34294846 | MS.gene008784:intron |
| GATGCATTATCTGCAAATGC+AGG | 0.555094 | 8.1:+34293552 | MS.gene008784:CDS |
| AGTTGGTTCTTGACTCCTTG+AGG | 0.563499 | 8.1:-34297293 | None:intergenic |
| CAGCAGATCCTTCCAACGAC+TGG | 0.570937 | 8.1:+34297157 | MS.gene008784:CDS |
| AGAGATTTATCTTCAATGTG+AGG | 0.573141 | 8.1:-34290087 | None:intergenic |
| ATGGTCTCATACTCCACCAC+CGG | 0.595235 | 8.1:+34293509 | MS.gene008784:CDS |
| GCAAATTCTGGATCCACCTA+GGG | 0.595240 | 8.1:+34290054 | MS.gene008784:CDS |
| CGTTGAACTCGATCACCACT+GGG | 0.595892 | 8.1:+34289141 | MS.gene008784:CDS |
| ATAACGAACCAGTCGTTGGA+AGG | 0.600616 | 8.1:-34297165 | None:intergenic |
| ATTGAAGATAAATCTCTCAA+AGG | 0.600659 | 8.1:+34290093 | MS.gene008784:CDS |
| GTGAGGTTAAAGCCATCCCT+AGG | 0.601835 | 8.1:-34290070 | None:intergenic |
| GCACATAACGAACCAGTCGT+TGG | 0.604353 | 8.1:-34297169 | None:intergenic |
| TTGAAGGCCCAAAACTGGAT+CGG | 0.604670 | 8.1:+34293694 | MS.gene008784:CDS |
| GGTAAAAGTAGCATCAGTAA+GGG | 0.605688 | 8.1:+34291490 | MS.gene008784:CDS |
| TATGAGACCATGAACAAGGA+GGG | 0.608289 | 8.1:-34293497 | None:intergenic |
| GAGCAACATTTCTAGAAGCA+AGG | 0.614317 | 8.1:-34291553 | None:intergenic |
| ACTCCACCACCGGAACTGAA+AGG | 0.622847 | 8.1:+34293519 | MS.gene008784:CDS |
| GATACTCCTTTCAGTTCCGG+TGG | 0.623232 | 8.1:-34293525 | None:intergenic |
| ATAGTTTCCGAAGATGGAGT+AGG | 0.625652 | 8.1:-34289968 | None:intergenic |
| TTTGGGCCTTCAACATGACG+AGG | 0.628818 | 8.1:-34293684 | None:intergenic |
| TACTGGATTATAGAGCCTCA+AGG | 0.632105 | 8.1:+34297278 | MS.gene008784:intron |
| ATTCTGGATCCACCTAGGGA+TGG | 0.640631 | 8.1:+34290058 | MS.gene008784:CDS |
| CGATGAACAAGAGCAACAAG+TGG | 0.645702 | 8.1:-34291587 | None:intergenic |
| GGAGTATGAGACCATGAACA+AGG | 0.647126 | 8.1:-34293501 | None:intergenic |
| AGGTTAAAGCCATCCCTAGG+TGG | 0.649198 | 8.1:-34290067 | None:intergenic |
| AGAATCTAGAATGGGACTGG+AGG | 0.653361 | 8.1:-34288979 | None:intergenic |
| AAAAGTAGCATCAGTAAGGG+AGG | 0.660193 | 8.1:+34291493 | MS.gene008784:CDS |
| TTGGGCCTTCAACATGACGA+GGG | 0.678323 | 8.1:-34293683 | None:intergenic |
| ATGAGACCATGAACAAGGAG+GGG | 0.678416 | 8.1:-34293496 | None:intergenic |
| CATCGTCAAATTCAACCCAG+TGG | 0.726847 | 8.1:-34289156 | None:intergenic |
| GTATGAGACCATGAACAAGG+AGG | 0.729871 | 8.1:-34293498 | None:intergenic |
| TTACCCTTAGTGGTGCACCA+AGG | 0.750127 | 8.1:-34291520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 34288971 | 34297326 | 34288971 | ID=MS.gene008784 |
| chr8.1 | mRNA | 34288971 | 34297326 | 34288971 | ID=MS.gene008784.t1;Parent=MS.gene008784 |
| chr8.1 | exon | 34288971 | 34289032 | 34288971 | ID=MS.gene008784.t1.exon1;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34288971 | 34289032 | 34288971 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34289129 | 34289195 | 34289129 | ID=MS.gene008784.t1.exon2;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34289129 | 34289195 | 34289129 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34289923 | 34290130 | 34289923 | ID=MS.gene008784.t1.exon3;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34289923 | 34290130 | 34289923 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34291471 | 34291640 | 34291471 | ID=MS.gene008784.t1.exon4;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34291471 | 34291640 | 34291471 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34293210 | 34293287 | 34293210 | ID=MS.gene008784.t1.exon5;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34293210 | 34293287 | 34293210 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34293456 | 34293588 | 34293456 | ID=MS.gene008784.t1.exon6;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34293456 | 34293588 | 34293456 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34293676 | 34293767 | 34293676 | ID=MS.gene008784.t1.exon7;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34293676 | 34293767 | 34293676 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34294858 | 34294914 | 34294858 | ID=MS.gene008784.t1.exon8;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34294858 | 34294914 | 34294858 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34297107 | 34297178 | 34297107 | ID=MS.gene008784.t1.exon9;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34297107 | 34297178 | 34297107 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| chr8.1 | exon | 34297291 | 34297326 | 34297291 | ID=MS.gene008784.t1.exon10;Parent=MS.gene008784.t1 |
| chr8.1 | CDS | 34297291 | 34297326 | 34297291 | ID=cds.MS.gene008784.t1;Parent=MS.gene008784.t1 |
| Gene Sequence |
| Protein sequence |