Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40797.t1 | XP_003591212.1 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 2.10E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40797.t1 | O81919 | 90.1 | 365 | 35 | 1 | 1 | 364 | 1 | 365 | 2.6e-151 | 536.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40797.t1 | G7I9H2 | 99.5 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 1.5e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052143 | MS.gene40797 | 0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene052169 | MS.gene40797 | 0.870881 | 1.04E-66 | -1.69E-46 |
| MS.gene052275 | MS.gene40797 | 0.812888 | 3.38E-51 | -1.69E-46 |
| MS.gene052308 | MS.gene40797 | 0.812611 | 3.89E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene40797 | 0.852715 | 3.85E-61 | -1.69E-46 |
| MS.gene052494 | MS.gene40797 | 0.815495 | 8.98E-52 | -1.69E-46 |
| MS.gene053097 | MS.gene40797 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene053173 | MS.gene40797 | 0.822493 | 2.30E-53 | -1.69E-46 |
| MS.gene054551 | MS.gene40797 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene40797 | 0.806748 | 7.07E-50 | -1.69E-46 |
| MS.gene054633 | MS.gene40797 | 0.815461 | 9.14E-52 | -1.69E-46 |
| MS.gene054662 | MS.gene40797 | 0.86897 | 4.39E-66 | -1.69E-46 |
| MS.gene056266 | MS.gene40797 | -0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene40797 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene056526 | MS.gene40797 | 0.810039 | 1.41E-50 | -1.69E-46 |
| MS.gene05652 | MS.gene40797 | 0.810788 | 9.68E-51 | -1.69E-46 |
| MS.gene05732 | MS.gene40797 | 0.838323 | 3.08E-57 | -1.69E-46 |
| MS.gene057367 | MS.gene40797 | 0.850159 | 2.03E-60 | -1.69E-46 |
| MS.gene057669 | MS.gene40797 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene057988 | MS.gene40797 | 0.811323 | 7.41E-51 | -1.69E-46 |
| MS.gene057990 | MS.gene40797 | 0.813067 | 3.09E-51 | -1.69E-46 |
| MS.gene058827 | MS.gene40797 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene40797 | 0.857286 | 1.81E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene40797 | 0.817951 | 2.53E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40797 | MS.gene072924 | PPI |
| MS.gene40797 | MS.gene056500 | PPI |
| MS.gene40797 | MS.gene008784 | PPI |
| MS.gene40797 | MS.gene014808 | PPI |
| MS.gene40797 | MS.gene072926 | PPI |
| MS.gene40797 | MS.gene93050 | PPI |
| MS.gene40797 | MS.gene26890 | PPI |
| MS.gene40797 | MS.gene33573 | PPI |
| MS.gene40797 | MS.gene44181 | PPI |
| MS.gene40797 | MS.gene32605 | PPI |
| MS.gene40797 | MS.gene006458 | PPI |
| MS.gene40797 | MS.gene056396 | PPI |
| MS.gene40797 | MS.gene014809 | PPI |
| MS.gene056598 | MS.gene40797 | PPI |
| MS.gene80048 | MS.gene40797 | PPI |
| MS.gene40797 | MS.gene051100 | PPI |
| MS.gene40797 | MS.gene28326 | PPI |
| MS.gene40797 | MS.gene024055 | PPI |
| MS.gene40797 | MS.gene52596 | PPI |
| MS.gene40797 | MS.gene32604 | PPI |
| MS.gene40797 | MS.gene32606 | PPI |
| MS.gene40797 | MS.gene30421 | PPI |
| MS.gene003867 | MS.gene40797 | PPI |
| MS.gene005307 | MS.gene40797 | PPI |
| MS.gene074437 | MS.gene40797 | PPI |
| MS.gene40797 | MS.gene25107 | PPI |
| MS.gene95690 | MS.gene40797 | PPI |
| MS.gene40797 | MS.gene014807 | PPI |
| MS.gene40797 | MS.gene072925 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40797.t1 | MTR_1g083960 | 99.292 | 424 | 2 | 1 | 1 | 424 | 1 | 423 | 0.0 | 845 |
| MS.gene40797.t1 | MTR_7g080370 | 63.897 | 349 | 124 | 1 | 10 | 356 | 9 | 357 | 7.12e-172 | 487 |
| MS.gene40797.t1 | MTR_7g080370 | 64.183 | 349 | 123 | 1 | 10 | 356 | 9 | 357 | 9.47e-172 | 487 |
| MS.gene40797.t1 | MTR_4g068080 | 61.538 | 351 | 135 | 0 | 1 | 351 | 1 | 351 | 1.83e-166 | 474 |
| MS.gene40797.t1 | MTR_8g095680 | 38.795 | 415 | 185 | 14 | 1 | 353 | 1 | 408 | 2.52e-62 | 210 |
| MS.gene40797.t1 | MTR_3g098430 | 36.408 | 412 | 196 | 14 | 1 | 353 | 1 | 405 | 5.42e-60 | 204 |
| MS.gene40797.t1 | MTR_3g098430 | 36.408 | 412 | 196 | 14 | 1 | 353 | 1 | 405 | 5.92e-60 | 204 |
| MS.gene40797.t1 | MTR_3g096590 | 75.238 | 105 | 19 | 3 | 320 | 424 | 363 | 460 | 5.66e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40797.t1 | AT1G09210 | 79.952 | 419 | 82 | 2 | 8 | 424 | 6 | 424 | 0.0 | 624 |
| MS.gene40797.t1 | AT1G56340 | 84.958 | 359 | 54 | 0 | 7 | 365 | 5 | 363 | 0.0 | 620 |
| MS.gene40797.t1 | AT1G56340 | 84.533 | 375 | 58 | 0 | 7 | 381 | 5 | 379 | 0.0 | 619 |
| MS.gene40797.t1 | AT1G08450 | 58.197 | 366 | 153 | 0 | 10 | 375 | 14 | 379 | 1.72e-165 | 472 |
| MS.gene40797.t1 | AT1G08450 | 52.732 | 366 | 148 | 1 | 10 | 375 | 14 | 354 | 5.37e-144 | 416 |
| MS.gene40797.t1 | AT1G08450 | 43.243 | 370 | 148 | 3 | 10 | 375 | 14 | 325 | 7.77e-105 | 315 |
| MS.gene40797.t1 | AT5G61790 | 38.384 | 396 | 185 | 12 | 10 | 353 | 13 | 401 | 8.98e-72 | 235 |
| MS.gene40797.t1 | AT5G07340 | 37.046 | 413 | 191 | 14 | 19 | 376 | 22 | 420 | 1.98e-57 | 197 |
| MS.gene40797.t1 | AT5G07340 | 37.592 | 407 | 184 | 15 | 25 | 376 | 37 | 428 | 4.14e-57 | 196 |
Find 127 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCTGGCTTCTTGTCTTC+AGG | 0.169701 | 1.2:-59536547 | None:intergenic |
| TTCCATGGTCCCTTGTACTC+TGG | 0.182700 | 1.2:-59536842 | None:intergenic |
| GTTCATGCTTGACAGAAAAT+TGG | 0.241397 | 1.2:-59535936 | None:intergenic |
| TTATCCTTGTTGCTGAATTC+AGG | 0.265305 | 1.2:-59535901 | None:intergenic |
| ATGTACGTCGTCCTCTTTAT+TGG | 0.266525 | 1.2:-59537728 | None:intergenic |
| TTCCACTTTCCACTGTAGTT+GGG | 0.290555 | 1.2:-59536972 | None:intergenic |
| TCAGGATCAGCAACCTCTTT+AGG | 0.312415 | 1.2:-59536674 | None:intergenic |
| TTCCATTGCAATGGCGATTA+GGG | 0.314157 | 1.2:+59534620 | None:intergenic |
| AGAACGAGAGAGAGAAGGTT+AGG | 0.314409 | 1.2:-59534651 | None:intergenic |
| CTTCCACTTTCCACTGTAGT+TGG | 0.316605 | 1.2:-59536973 | None:intergenic |
| GATGTTGATCAGAAGAAATT+TGG | 0.323562 | 1.2:+59536003 | MS.gene40797:CDS |
| CCTCTGGCTTCTTGTCTTCA+GGG | 0.335164 | 1.2:-59536546 | None:intergenic |
| ATTCCATTGCAATGGCGATT+AGG | 0.335328 | 1.2:+59534619 | None:intergenic |
| CAAGGACCCAGAGGCCAAAA+AGG | 0.346525 | 1.2:+59536391 | MS.gene40797:CDS |
| GGCTTCTTGTCTTCAGGGTC+AGG | 0.351167 | 1.2:-59536541 | None:intergenic |
| TCCTTATCATCCCAATCTTC+TGG | 0.358229 | 1.2:-59536511 | None:intergenic |
| GTACTGTAACCACAGATATC+TGG | 0.359127 | 1.2:-59536167 | None:intergenic |
| TGCTGATCCTGATGCCAAAA+AGG | 0.359945 | 1.2:+59536685 | MS.gene40797:CDS |
| TCCATGGTCCCTTGTACTCT+GGG | 0.365819 | 1.2:-59536841 | None:intergenic |
| TCGCAGAAGCGATGGATAGA+AGG | 0.367240 | 1.2:-59534680 | None:intergenic |
| TTAACTTTGCAGGTGAAATC+TGG | 0.376979 | 1.2:+59537256 | MS.gene40797:intron |
| TTGTTTGCAGGATGAGCTCT+AGG | 0.388195 | 1.2:+59537830 | MS.gene40797:intron |
| TATATATTTACCAGACTTCA+AGG | 0.404034 | 1.2:+59537099 | MS.gene40797:intron |
| AGCAACTTGCTTAGCATACT+CGG | 0.412572 | 1.2:-59537314 | None:intergenic |
| GAACATCCTTCTTGATTAAG+TGG | 0.416832 | 1.2:-59536229 | None:intergenic |
| ATGCCAACATACTTCAACTT+GGG | 0.437777 | 1.2:-59537145 | None:intergenic |
| TTGCAATGGCGATTAGGGTT+CGG | 0.442463 | 1.2:+59534625 | None:intergenic |
| TATCCTTGTTGCTGAATTCA+GGG | 0.448897 | 1.2:-59535900 | None:intergenic |
| ATAAAATCTGTAATCTTCAC+TGG | 0.449401 | 1.2:-59535860 | None:intergenic |
| AAACAAACCTTTGGCTTCCA+TGG | 0.453885 | 1.2:-59536857 | None:intergenic |
| AATACTTACAGCCAGAAGAT+TGG | 0.454631 | 1.2:+59536500 | MS.gene40797:intron |
| AGAGTCATGGCTAACTTCAT+TGG | 0.454725 | 1.2:-59537662 | None:intergenic |
| ATACTTACAGCCAGAAGATT+GGG | 0.460743 | 1.2:+59536501 | MS.gene40797:intron |
| TAAGTGGTTTGTGTCATTGT+AGG | 0.461585 | 1.2:-59536213 | None:intergenic |
| GCCAGAAGATTGGGATGATA+AGG | 0.462026 | 1.2:+59536510 | MS.gene40797:intron |
| CATTGCCAACCCAGAGTACA+AGG | 0.463149 | 1.2:+59536832 | MS.gene40797:CDS |
| TCCACTTTCCACTGTAGTTG+GGG | 0.465244 | 1.2:-59536971 | None:intergenic |
| CTGGTAGTCTTTACTCTGAC+TGG | 0.467326 | 1.2:+59536345 | MS.gene40797:CDS |
| CGTTGATTCTGATGCGGAAG+AGG | 0.469655 | 1.2:+59537627 | MS.gene40797:CDS |
| TTGGGGAAAACATAGATGTC+AGG | 0.470534 | 1.2:-59537127 | None:intergenic |
| AGAAACATGGGGCAAGCAAA+AGG | 0.486201 | 1.2:+59537339 | MS.gene40797:CDS |
| AGAAGGATGAGAACTTGGCC+GGG | 0.487362 | 1.2:+59535669 | MS.gene40797:CDS |
| ATGAGAACTTGGCCGGGGAG+TGG | 0.492077 | 1.2:+59535675 | MS.gene40797:CDS |
| AAAATGCTGTAGGTTGCATC+AGG | 0.493543 | 1.2:-59536299 | None:intergenic |
| CGCAGAAGCGATGGATAGAA+GGG | 0.494372 | 1.2:-59534679 | None:intergenic |
| TCCTCATCATCCCAGTCCTC+AGG | 0.495577 | 1.2:-59536785 | None:intergenic |
| GATAACGTTGAGAAGCAAAC+TGG | 0.496012 | 1.2:+59536326 | MS.gene40797:CDS |
| TTCCCCAAGTTGAAGTATGT+TGG | 0.497182 | 1.2:+59537142 | MS.gene40797:CDS |
| CTTGTACTCTGGGTTGGCAA+TGG | 0.498402 | 1.2:-59536831 | None:intergenic |
| GAAAACCTTCGCAGAAGCGA+TGG | 0.502839 | 1.2:-59534688 | None:intergenic |
| AGCAAGTTGCTGAAGAAACA+TGG | 0.506018 | 1.2:+59537326 | MS.gene40797:CDS |
| TATGTTCTTGCAGGCTGAGA+AGG | 0.508527 | 1.2:+59537441 | MS.gene40797:intron |
| TTCTTCGAAGAGCGCTTCGA+AGG | 0.509596 | 1.2:+59534708 | MS.gene40797:CDS |
| TTCTGATGCGGAAGAGGATG+AGG | 0.510129 | 1.2:+59537633 | MS.gene40797:CDS |
| ATGGAAGAAGGATGAGAACT+TGG | 0.515979 | 1.2:+59535664 | MS.gene40797:CDS |
| TCTATCCATCGCTTCTGCGA+AGG | 0.516389 | 1.2:+59534683 | MS.gene40797:CDS |
| AAGAAGGATGAGAACTTGGC+CGG | 0.516801 | 1.2:+59535668 | MS.gene40797:CDS |
| AATGCCAACATACTTCAACT+TGG | 0.516939 | 1.2:-59537146 | None:intergenic |
| GGAACTACACCTCTGGTCAA+TGG | 0.518922 | 1.2:+59535696 | MS.gene40797:CDS |
| CTCTTCCGCATCAGAATCAA+CGG | 0.521513 | 1.2:-59537626 | None:intergenic |
| TTCAGGGAACTCAGCAGAGA+TGG | 0.522780 | 1.2:-59535884 | None:intergenic |
| GGTAAAATCTGAATGGAAGA+AGG | 0.524814 | 1.2:+59535652 | MS.gene40797:CDS |
| TGGTCCCTTGTACTCTGGGT+TGG | 0.525060 | 1.2:-59536837 | None:intergenic |
| GAACGAGAGAGAGAAGGTTA+GGG | 0.525740 | 1.2:-59534650 | None:intergenic |
| AAACCTGGGTTGTCAATCAA+TGG | 0.532475 | 1.2:-59536999 | None:intergenic |
| TGTTGTGTAGCCTGAGGACT+GGG | 0.537049 | 1.2:+59536775 | MS.gene40797:intron |
| TCTTCCGCATCAGAATCAAC+GGG | 0.545764 | 1.2:-59537625 | None:intergenic |
| CACAAACCACTTAATCAAGA+AGG | 0.545807 | 1.2:+59536223 | MS.gene40797:CDS |
| GGGGAGTGGAACTACACCTC+TGG | 0.546989 | 1.2:+59535689 | MS.gene40797:CDS |
| GCAACTTGCTTAGCATACTC+GGG | 0.550973 | 1.2:-59537313 | None:intergenic |
| CTAAAGATGGATGGGAAAGC+CGG | 0.553813 | 1.2:+59535627 | MS.gene40797:intron |
| GCCGGTGGGTAAAATCTGAA+TGG | 0.553831 | 1.2:+59535645 | MS.gene40797:CDS |
| GTTATCAATCAAAATGCTGT+AGG | 0.554637 | 1.2:-59536309 | None:intergenic |
| TGTTTGCAGGATGAGCTCTA+GGG | 0.555016 | 1.2:+59537831 | MS.gene40797:intron |
| TGTTGAATGCTAAAGATGGA+TGG | 0.555665 | 1.2:+59535618 | MS.gene40797:intron |
| ACCCCAACTACAGTGGAAAG+TGG | 0.558201 | 1.2:+59536970 | MS.gene40797:CDS |
| TTGTTGTGTAGCCTGAGGAC+TGG | 0.566755 | 1.2:+59536774 | MS.gene40797:intron |
| CAGCGATGAAACCAATAAAG+AGG | 0.572191 | 1.2:+59537717 | MS.gene40797:CDS |
| CTTAGCATACTCGGGATCAT+CGG | 0.572247 | 1.2:-59537305 | None:intergenic |
| AGAAAAGAACGAGAGAGAGA+AGG | 0.573982 | 1.2:-59534656 | None:intergenic |
| TGACTCTGATGATGAGTCAA+AGG | 0.575775 | 1.2:+59537678 | MS.gene40797:CDS |
| ATACGATGACATTCCTAAAG+AGG | 0.576967 | 1.2:+59536661 | MS.gene40797:CDS |
| GATATTATAAATCACCTGTA+GGG | 0.577404 | 1.2:-59536036 | None:intergenic |
| TCTCCCACCAAAGAAAATCA+AGG | 0.577520 | 1.2:+59536373 | MS.gene40797:CDS |
| TTGGCGGTGATACTCCCTAC+AGG | 0.578535 | 1.2:+59536022 | MS.gene40797:CDS |
| GTTGAATGCTAAAGATGGAT+GGG | 0.579079 | 1.2:+59535619 | MS.gene40797:intron |
| CAGAAACTTGACTGTGGTGG+TGG | 0.579680 | 1.2:+59535958 | MS.gene40797:CDS |
| GTTGATCAGAAGAAATTTGG+CGG | 0.581881 | 1.2:+59536006 | MS.gene40797:CDS |
| AGAGGTGTAGTTCCACTCCC+CGG | 0.582515 | 1.2:-59535687 | None:intergenic |
| AACTCATTGTCAGGAAACAA+AGG | 0.583402 | 1.2:+59537597 | MS.gene40797:intron |
| AGCTGAGAAGAAGAAAGAAG+AGG | 0.584374 | 1.2:+59537477 | MS.gene40797:CDS |
| GGTTACATGAAGTTGCTTAG+CGG | 0.587170 | 1.2:+59535979 | MS.gene40797:CDS |
| GCAAGTTGCTGAAGAAACAT+GGG | 0.587236 | 1.2:+59537327 | MS.gene40797:CDS |
| TGCTGTAGGTTGCATCAGGA+CGG | 0.587388 | 1.2:-59536295 | None:intergenic |
| GATGAGTCAAAGGCAGAAGC+TGG | 0.589511 | 1.2:+59537688 | MS.gene40797:CDS |
| GACTGGGATGATGAGGAAGA+TGG | 0.589626 | 1.2:+59536791 | MS.gene40797:CDS |
| TGTTGGCATTGAATTGTGGC+AGG | 0.591537 | 1.2:+59537159 | MS.gene40797:CDS |
| GAAGGATGAGAACTTGGCCG+GGG | 0.593588 | 1.2:+59535670 | MS.gene40797:CDS |
| TTGACTCATCATCAGAGTCA+TGG | 0.601599 | 1.2:-59537675 | None:intergenic |
| TACTCTGGGTTGGCAATGGT+AGG | 0.604644 | 1.2:-59536827 | None:intergenic |
| TACACCTCTGGTCAATGGAA+TGG | 0.606107 | 1.2:+59535701 | MS.gene40797:CDS |
| TGCCAACATACTTCAACTTG+GGG | 0.607807 | 1.2:-59537144 | None:intergenic |
| AAGATGGATGGGAAAGCCGG+TGG | 0.610833 | 1.2:+59535630 | MS.gene40797:intron |
| TGAGAAGAAGAAAGAAGAGG+AGG | 0.621039 | 1.2:+59537480 | MS.gene40797:CDS |
| GCCTGAGGACTGGGATGATG+AGG | 0.621427 | 1.2:+59536784 | MS.gene40797:intron |
| CAACTACAGTGGAAAGTGGA+AGG | 0.622242 | 1.2:+59536974 | MS.gene40797:CDS |
| TGGGGAAAACATAGATGTCA+GGG | 0.628802 | 1.2:-59537126 | None:intergenic |
| ATGTGTAAACATGAGTAAGC+TGG | 0.631281 | 1.2:-59536265 | None:intergenic |
| ATCAAGAACCCCAACTACAG+TGG | 0.637028 | 1.2:+59536963 | MS.gene40797:CDS |
| ACCCAGAGTACAAGGGACCA+TGG | 0.641246 | 1.2:+59536840 | MS.gene40797:CDS |
| GTAAGCTGGTCAGTCTCACA+AGG | 0.646980 | 1.2:-59536251 | None:intergenic |
| AGTATGTTGGCATTGAATTG+TGG | 0.647006 | 1.2:+59537155 | MS.gene40797:CDS |
| ATGATGAGGAAGATGGTGAG+TGG | 0.647034 | 1.2:+59536798 | MS.gene40797:CDS |
| AATGGTGACGCTAATGACAA+AGG | 0.650029 | 1.2:+59535719 | MS.gene40797:CDS |
| ATGTTTGGTCCAGATATCTG+TGG | 0.653875 | 1.2:+59536158 | MS.gene40797:CDS |
| CAAGGGACCATGGAAGCCAA+AGG | 0.658097 | 1.2:+59536850 | MS.gene40797:CDS |
| TGATCCCGTTGATTCTGATG+CGG | 0.665412 | 1.2:+59537621 | MS.gene40797:CDS |
| GCACCATTGATTGACAACCC+AGG | 0.669589 | 1.2:+59536996 | MS.gene40797:CDS |
| AAAGAAAATCAAGGACCCAG+AGG | 0.673165 | 1.2:+59536382 | MS.gene40797:CDS |
| GTTCCCTGAATTCAGCAACA+AGG | 0.674436 | 1.2:+59535897 | MS.gene40797:CDS |
| AGATGGATGGGAAAGCCGGT+GGG | 0.676998 | 1.2:+59535631 | MS.gene40797:intron |
| CCCTGAAGACAAGAAGCCAG+AGG | 0.683823 | 1.2:+59536546 | MS.gene40797:CDS |
| CAAGTTGCTGAAGAAACATG+GGG | 0.696192 | 1.2:+59537328 | MS.gene40797:CDS |
| GTCACCATTCCATTGACCAG+AGG | 0.697163 | 1.2:-59535705 | None:intergenic |
| ATTGCCAACCCAGAGTACAA+GGG | 0.731176 | 1.2:+59536833 | MS.gene40797:CDS |
| GAACAGAAACTTGACTGTGG+TGG | 0.776860 | 1.2:+59535955 | MS.gene40797:CDS |
| CATGAACAGAAACTTGACTG+TGG | 0.796573 | 1.2:+59535952 | MS.gene40797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGCAGTGATAATATTA+TGG | - | chr1.2:59535454-59535473 | None:intergenic | 20.0% |
| !! | ACATTCATGTTTGTAATTTA+TGG | + | chr1.2:59534800-59534819 | MS.gene40797:intron | 20.0% |
| !! | ATAATATAATGAGAGATGAA+TGG | - | chr1.2:59536734-59536753 | None:intergenic | 20.0% |
| !! | ATCAAAACACAAGTTAAAAA+AGG | - | chr1.2:59535592-59535611 | None:intergenic | 20.0% |
| !! | ATGATTAGAAATTAGAAAGT+AGG | - | chr1.2:59536474-59536493 | None:intergenic | 20.0% |
| !! | ATTCATCTCTCATTATATTA+TGG | + | chr1.2:59536733-59536752 | MS.gene40797:intron | 20.0% |
| !! | TCAAAACACAAGTTAAAAAA+GGG | - | chr1.2:59535591-59535610 | None:intergenic | 20.0% |
| !! | TGATATATTGCAATATGTTT+AGG | + | chr1.2:59536896-59536915 | MS.gene40797:intron | 20.0% |
| !!! | TTGATTTGTTTACTAACTTT+TGG | + | chr1.2:59536921-59536940 | MS.gene40797:intron | 20.0% |
| ! | AAAACTACCATTCTTTAATC+CGG | - | chr1.2:59535176-59535195 | None:intergenic | 25.0% |
| ! | AATTTGATCTAATCCAAACA+AGG | + | chr1.2:59535428-59535447 | MS.gene40797:intron | 25.0% |
| ! | ATAAAATCTGTAATCTTCAC+TGG | - | chr1.2:59535863-59535882 | None:intergenic | 25.0% |
| ! | ATACAAAAGCTTAGAGTAAA+AGG | - | chr1.2:59536577-59536596 | None:intergenic | 25.0% |
| ! | ATACTAAATAAACTCGAACA+TGG | - | chr1.2:59535523-59535542 | None:intergenic | 25.0% |
| ! | ATGACATGAAAAAAGAGATA+TGG | - | chr1.2:59534748-59534767 | None:intergenic | 25.0% |
| ! | ATTATGTTGAATGCTAAAGA+TGG | + | chr1.2:59535614-59535633 | MS.gene40797:intron | 25.0% |
| ! | CAAAACACAAGTTAAAAAAG+GGG | - | chr1.2:59535590-59535609 | None:intergenic | 25.0% |
| ! | CCTTAAGGAATAAAACTTAA+TGG | + | chr1.2:59537396-59537415 | MS.gene40797:intron | 25.0% |
| ! | GATATTATAAATCACCTGTA+GGG | - | chr1.2:59536039-59536058 | None:intergenic | 25.0% |
| ! | GGATTGTAAACAAAATGAAA+TGG | - | chr1.2:59535103-59535122 | None:intergenic | 25.0% |
| ! | GGTTAATTAATCTTTGATCA+TGG | + | chr1.2:59535031-59535050 | MS.gene40797:intron | 25.0% |
| ! | GTAGGAATACATAAAACAAA+AGG | - | chr1.2:59536456-59536475 | None:intergenic | 25.0% |
| ! | TACATAAAACAAAAGGAATC+TGG | - | chr1.2:59536449-59536468 | None:intergenic | 25.0% |
| ! | TATATATTTACCAGACTTCA+AGG | + | chr1.2:59537099-59537118 | MS.gene40797:intron | 25.0% |
| ! | TATCTAATACACAACATAGT+AGG | - | chr1.2:59536613-59536632 | None:intergenic | 25.0% |
| ! | TGAAAAAAGAGATATGGAAA+TGG | - | chr1.2:59534742-59534761 | None:intergenic | 25.0% |
| ! | TGAAAGAGATAAAACTAGAA+GGG | - | chr1.2:59536061-59536080 | None:intergenic | 25.0% |
| !! | CAATCCTTTTAATCTCATTT+CGG | + | chr1.2:59535117-59535136 | MS.gene40797:intron | 25.0% |
| !! | TAATTTTGCAGTATCATGTT+TGG | + | chr1.2:59536143-59536162 | MS.gene40797:intron | 25.0% |
| !! | TTTCTATTCACTCAATCTTT+TGG | + | chr1.2:59537373-59537392 | MS.gene40797:intron | 25.0% |
| !!! | ATGTTGATTTGAAAACGATT+TGG | + | chr1.2:59534997-59535016 | MS.gene40797:intron | 25.0% |
| !!! | CCATTAAGTTTTATTCCTTA+AGG | - | chr1.2:59537399-59537418 | None:intergenic | 25.0% |
| AACTATAAACGTAGGTGAAA+AGG | - | chr1.2:59536420-59536439 | None:intergenic | 30.0% | |
| AATTACACAACAATGCACAA+AGG | - | chr1.2:59534838-59534857 | None:intergenic | 30.0% | |
| ACAAACAGTTCATTAAAAGC+TGG | - | chr1.2:59535271-59535290 | None:intergenic | 30.0% | |
| ACTAAAATGCTCAAATCAAG+TGG | - | chr1.2:59537212-59537231 | None:intergenic | 30.0% | |
| ACTATAAACGTAGGTGAAAA+GGG | - | chr1.2:59536419-59536438 | None:intergenic | 30.0% | |
| GATGTTGATCAGAAGAAATT+TGG | + | chr1.2:59536003-59536022 | MS.gene40797:CDS | 30.0% | |
| GGATATTATAAATCACCTGT+AGG | - | chr1.2:59536040-59536059 | None:intergenic | 30.0% | |
| GGCAATTAAACTATAAACGT+AGG | - | chr1.2:59536428-59536447 | None:intergenic | 30.0% | |
| GTGAAAGAGATAAAACTAGA+AGG | - | chr1.2:59536062-59536081 | None:intergenic | 30.0% | |
| GTTATCAATCAAAATGCTGT+AGG | - | chr1.2:59536312-59536331 | None:intergenic | 30.0% | |
| TCTGACATTCTGTATTTGTA+GGG | + | chr1.2:59536638-59536657 | MS.gene40797:intron | 30.0% | |
| TCTTCCGAAATGAGATTAAA+AGG | - | chr1.2:59535124-59535143 | None:intergenic | 30.0% | |
| TGAATTGAAAGATGATACTG+AGG | + | chr1.2:59535796-59535815 | MS.gene40797:intron | 30.0% | |
| ! | TGTGATTGAATTTTCACGAT+CGG | + | chr1.2:59534865-59534884 | MS.gene40797:intron | 30.0% |
| ! | TTAATGGATGTTGATCTCTT+TGG | + | chr1.2:59537412-59537431 | MS.gene40797:intron | 30.0% |
| !! | AAGGGGAAAATATTGATTTG+AGG | - | chr1.2:59535573-59535592 | None:intergenic | 30.0% |
| !! | GATAATATTATGGCCTTGTT+TGG | - | chr1.2:59535444-59535463 | None:intergenic | 30.0% |
| !!! | TAACTTTTGGTGTTACATCT+TGG | + | chr1.2:59536934-59536953 | MS.gene40797:intron | 30.0% |
| !!! | TTTCTTTCCTTTTTTCGTTG+AGG | + | chr1.2:59535492-59535511 | MS.gene40797:intron | 30.0% |
| AACTCATTGTCAGGAAACAA+AGG | + | chr1.2:59537597-59537616 | MS.gene40797:intron | 35.0% | |
| AACTTCCTTAACTCATTGTC+AGG | + | chr1.2:59537588-59537607 | MS.gene40797:intron | 35.0% | |
| AATAATTGTTGTGTAGCCTG+AGG | + | chr1.2:59536769-59536788 | MS.gene40797:intron | 35.0% | |
| AATACTTACAGCCAGAAGAT+TGG | + | chr1.2:59536500-59536519 | MS.gene40797:intron | 35.0% | |
| AATGCCAACATACTTCAACT+TGG | - | chr1.2:59537149-59537168 | None:intergenic | 35.0% | |
| ACACCAGCAACAATAAAACA+AGG | - | chr1.2:59535770-59535789 | None:intergenic | 35.0% | |
| ATACGATGACATTCCTAAAG+AGG | + | chr1.2:59536661-59536680 | MS.gene40797:CDS | 35.0% | |
| ATACTTACAGCCAGAAGATT+GGG | + | chr1.2:59536501-59536520 | MS.gene40797:intron | 35.0% | |
| ATGCCAACATACTTCAACTT+GGG | - | chr1.2:59537148-59537167 | None:intergenic | 35.0% | |
| ATGCTATAAGCTGTGACTTA+CGG | - | chr1.2:59535400-59535419 | None:intergenic | 35.0% | |
| ATGTGTAAACATGAGTAAGC+TGG | - | chr1.2:59536268-59536287 | None:intergenic | 35.0% | |
| CAAATCAACATCATCACGTT+CGG | - | chr1.2:59534988-59535007 | None:intergenic | 35.0% | |
| CAAATGTTTGATATCTCCAC+AGG | + | chr1.2:59535829-59535848 | MS.gene40797:intron | 35.0% | |
| CACAAACCACTTAATCAAGA+AGG | + | chr1.2:59536223-59536242 | MS.gene40797:CDS | 35.0% | |
| CTAATACACAACATAGTAGG+TGG | - | chr1.2:59536610-59536629 | None:intergenic | 35.0% | |
| CTCTGACATTCTGTATTTGT+AGG | + | chr1.2:59536637-59536656 | MS.gene40797:intron | 35.0% | |
| GAACATCCTTCTTGATTAAG+TGG | - | chr1.2:59536232-59536251 | None:intergenic | 35.0% | |
| GGTAAAATCTGAATGGAAGA+AGG | + | chr1.2:59535652-59535671 | MS.gene40797:CDS | 35.0% | |
| GTTCATGCTTGACAGAAAAT+TGG | - | chr1.2:59535939-59535958 | None:intergenic | 35.0% | |
| GTTGAATGCTAAAGATGGAT+GGG | + | chr1.2:59535619-59535638 | MS.gene40797:intron | 35.0% | |
| GTTGATCAGAAGAAATTTGG+CGG | + | chr1.2:59536006-59536025 | MS.gene40797:CDS | 35.0% | |
| TAACTTCAACTGCGAAAACA+AGG | - | chr1.2:59537034-59537053 | None:intergenic | 35.0% | |
| TATCCTTGTTGCTGAATTCA+GGG | - | chr1.2:59535903-59535922 | None:intergenic | 35.0% | |
| TGGTGAATATATGTTCTTGC+AGG | + | chr1.2:59537432-59537451 | MS.gene40797:intron | 35.0% | |
| TGTTGAATGCTAAAGATGGA+TGG | + | chr1.2:59535618-59535637 | MS.gene40797:intron | 35.0% | |
| TGTTTCCTGACAATGAGTTA+AGG | - | chr1.2:59537596-59537615 | None:intergenic | 35.0% | |
| TTAACTTTGCAGGTGAAATC+TGG | + | chr1.2:59537256-59537275 | MS.gene40797:intron | 35.0% | |
| TTATCCTTGTTGCTGAATTC+AGG | - | chr1.2:59535904-59535923 | None:intergenic | 35.0% | |
| TTGAAAGATGATACTGAGGT+TGG | + | chr1.2:59535800-59535819 | MS.gene40797:intron | 35.0% | |
| TTTCCACACAAACAAACCTT+TGG | - | chr1.2:59536869-59536888 | None:intergenic | 35.0% | |
| TTTGAATTGTGTTGTGTGTC+CGG | + | chr1.2:59535154-59535173 | MS.gene40797:intron | 35.0% | |
| TTTGTCTCTGTTTGTGTGTA+AGG | + | chr1.2:59535214-59535233 | MS.gene40797:intron | 35.0% | |
| ! | AGTATGTTGGCATTGAATTG+TGG | + | chr1.2:59537155-59537174 | MS.gene40797:CDS | 35.0% |
| ! | TAAGTGGTTTGTGTCATTGT+AGG | - | chr1.2:59536216-59536235 | None:intergenic | 35.0% |
| ! | TGGGAAACAACTAACCTTTT+TGG | - | chr1.2:59536702-59536721 | None:intergenic | 35.0% |
| !! | AGAGTAAAAGGTATTACCTC+TGG | - | chr1.2:59536565-59536584 | None:intergenic | 35.0% |
| !!! | AACGATTTGGCACGTTTTTT+TGG | + | chr1.2:59535010-59535029 | MS.gene40797:intron | 35.0% |
| !!! | CAACCTTGTTTTATTGTTGC+TGG | + | chr1.2:59535764-59535783 | MS.gene40797:intron | 35.0% |
| !!! | CAGAATAGCGTGTACTTTTT+TGG | - | chr1.2:59536192-59536211 | None:intergenic | 35.0% |
| AAAATGCTGTAGGTTGCATC+AGG | - | chr1.2:59536302-59536321 | None:intergenic | 40.0% | |
| AAACCTGGGTTGTCAATCAA+TGG | - | chr1.2:59537002-59537021 | None:intergenic | 40.0% | |
| AAAGAAAATCAAGGACCCAG+AGG | + | chr1.2:59536382-59536401 | MS.gene40797:CDS | 40.0% | |
| ACAAGGATGAAAAGCAAACC+TGG | - | chr1.2:59537017-59537036 | None:intergenic | 40.0% | |
| AGAAAAGAACGAGAGAGAGA+AGG | - | chr1.2:59534659-59534678 | None:intergenic | 40.0% | |
| AGAGTCATGGCTAACTTCAT+TGG | - | chr1.2:59537665-59537684 | None:intergenic | 40.0% | |
| AGATGAATGGACACAGCAAT+GGG | - | chr1.2:59536721-59536740 | None:intergenic | 40.0% | |
| AGCAAGCTACTTAACTTTGC+AGG | + | chr1.2:59537246-59537265 | MS.gene40797:intron | 40.0% | |
| AGCAAGTTGCTGAAGAAACA+TGG | + | chr1.2:59537326-59537345 | MS.gene40797:CDS | 40.0% | |
| AGCTAACATGTGTCATGTCT+TGG | + | chr1.2:59536082-59536101 | MS.gene40797:intron | 40.0% | |
| AGCTGAGAAGAAGAAAGAAG+AGG | + | chr1.2:59537477-59537496 | MS.gene40797:CDS | 40.0% | |
| ATGGAAGAAGGATGAGAACT+TGG | + | chr1.2:59535664-59535683 | MS.gene40797:CDS | 40.0% | |
| ATGTACGTCGTCCTCTTTAT+TGG | - | chr1.2:59537731-59537750 | None:intergenic | 40.0% | |
| ATGTTTGGTCCAGATATCTG+TGG | + | chr1.2:59536158-59536177 | MS.gene40797:CDS | 40.0% | |
| CAAGGATGAAAAGCAAACCT+GGG | - | chr1.2:59537016-59537035 | None:intergenic | 40.0% | |
| CAAGTTGCTGAAGAAACATG+GGG | + | chr1.2:59537328-59537347 | MS.gene40797:CDS | 40.0% | |
| CAGCGATGAAACCAATAAAG+AGG | + | chr1.2:59537717-59537736 | MS.gene40797:CDS | 40.0% | |
| CATGAACAGAAACTTGACTG+TGG | + | chr1.2:59535952-59535971 | MS.gene40797:CDS | 40.0% | |
| GATAACGTTGAGAAGCAAAC+TGG | + | chr1.2:59536326-59536345 | MS.gene40797:CDS | 40.0% | |
| GCAAGTTGCTGAAGAAACAT+GGG | + | chr1.2:59537327-59537346 | MS.gene40797:CDS | 40.0% | |
| GGACTATCCTCAACGAAAAA+AGG | - | chr1.2:59535502-59535521 | None:intergenic | 40.0% | |
| GGTTACATGAAGTTGCTTAG+CGG | + | chr1.2:59535979-59535998 | MS.gene40797:CDS | 40.0% | |
| GTACTGTAACCACAGATATC+TGG | - | chr1.2:59536170-59536189 | None:intergenic | 40.0% | |
| TCATCCTGCAAACAAAAGGA+GGG | - | chr1.2:59537825-59537844 | None:intergenic | 40.0% | |
| TCCTTATCATCCCAATCTTC+TGG | - | chr1.2:59536514-59536533 | None:intergenic | 40.0% | |
| TCTCCCACCAAAGAAAATCA+AGG | + | chr1.2:59536373-59536392 | MS.gene40797:CDS | 40.0% | |
| TGAGAAGAAGAAAGAAGAGG+AGG | + | chr1.2:59537480-59537499 | MS.gene40797:CDS | 40.0% | |
| TGCCAACATACTTCAACTTG+GGG | - | chr1.2:59537147-59537166 | None:intergenic | 40.0% | |
| TGGGGAAAACATAGATGTCA+GGG | - | chr1.2:59537129-59537148 | None:intergenic | 40.0% | |
| TGTGTGTCCGGATTAAAGAA+TGG | + | chr1.2:59535166-59535185 | MS.gene40797:intron | 40.0% | |
| TTCCACTTTCCACTGTAGTT+GGG | - | chr1.2:59536975-59536994 | None:intergenic | 40.0% | |
| TTCTTTCCATAGAGTCTCAC+AGG | - | chr1.2:59535329-59535348 | None:intergenic | 40.0% | |
| TTGACTCATCATCAGAGTCA+TGG | - | chr1.2:59537678-59537697 | None:intergenic | 40.0% | |
| TTGGGGAAAACATAGATGTC+AGG | - | chr1.2:59537130-59537149 | None:intergenic | 40.0% | |
| ! | AAACAAACCTTTGGCTTCCA+TGG | - | chr1.2:59536860-59536879 | None:intergenic | 40.0% |
| ! | AAGCCAAAGGTTTGTTTGTG+TGG | + | chr1.2:59536863-59536882 | MS.gene40797:intron | 40.0% |
| ! | AATGGTGACGCTAATGACAA+AGG | + | chr1.2:59535719-59535738 | MS.gene40797:CDS | 40.0% |
| ! | AGCAACTTGCTTAGCATACT+CGG | - | chr1.2:59537317-59537336 | None:intergenic | 40.0% |
| ! | GGTCCTTGATTTTCTTTGGT+GGG | - | chr1.2:59536379-59536398 | None:intergenic | 40.0% |
| ! | TCCATTCAGATTTTACCCAC+CGG | - | chr1.2:59535649-59535668 | None:intergenic | 40.0% |
| ! | TCTGGGTCCTTGATTTTCTT+TGG | - | chr1.2:59536383-59536402 | None:intergenic | 40.0% |
| ! | TGACTCTGATGATGAGTCAA+AGG | + | chr1.2:59537678-59537697 | MS.gene40797:CDS | 40.0% |
| ! | TGCAAAGTTAAGTAGCTTGC+TGG | - | chr1.2:59537247-59537266 | None:intergenic | 40.0% |
| ! | TTCCCCAAGTTGAAGTATGT+TGG | + | chr1.2:59537142-59537161 | MS.gene40797:CDS | 40.0% |
| !! | CAACTAACCTTTTTGGCATC+AGG | - | chr1.2:59536695-59536714 | None:intergenic | 40.0% |
| !! | TTCACTGGTTTGAATACCTG+TGG | - | chr1.2:59535848-59535867 | None:intergenic | 40.0% |
| !!! | AGGTGAAAAGGGTACCTTTT+TGG | - | chr1.2:59536408-59536427 | None:intergenic | 40.0% |
| !!! | CACTCAATCTTTTGGCCTTA+AGG | + | chr1.2:59537381-59537400 | MS.gene40797:intron | 40.0% |
| AAGAAGGATGAGAACTTGGC+CGG | + | chr1.2:59535668-59535687 | MS.gene40797:CDS | 45.0% | |
| AGAAACATGGGGCAAGCAAA+AGG | + | chr1.2:59537339-59537358 | MS.gene40797:CDS | 45.0% | |
| AGAACGAGAGAGAGAAGGTT+AGG | - | chr1.2:59534654-59534673 | None:intergenic | 45.0% | |
| ATCAAGAACCCCAACTACAG+TGG | + | chr1.2:59536963-59536982 | MS.gene40797:CDS | 45.0% | |
| ATGATGAGGAAGATGGTGAG+TGG | + | chr1.2:59536798-59536817 | MS.gene40797:CDS | 45.0% | |
| ATTGCCAACCCAGAGTACAA+GGG | + | chr1.2:59536833-59536852 | MS.gene40797:CDS | 45.0% | |
| CAACTACAGTGGAAAGTGGA+AGG | + | chr1.2:59536974-59536993 | MS.gene40797:CDS | 45.0% | |
| CATCCTGCAAACAAAAGGAG+GGG | - | chr1.2:59537824-59537843 | None:intergenic | 45.0% | |
| CTAAAGATGGATGGGAAAGC+CGG | + | chr1.2:59535627-59535646 | MS.gene40797:intron | 45.0% | |
| CTCATCCTGCAAACAAAAGG+AGG | - | chr1.2:59537826-59537845 | None:intergenic | 45.0% | |
| CTCTTCCGCATCAGAATCAA+CGG | - | chr1.2:59537629-59537648 | None:intergenic | 45.0% | |
| CTGGTAGTCTTTACTCTGAC+TGG | + | chr1.2:59536345-59536364 | MS.gene40797:CDS | 45.0% | |
| CTTAGCATACTCGGGATCAT+CGG | - | chr1.2:59537308-59537327 | None:intergenic | 45.0% | |
| CTTCCACTTTCCACTGTAGT+TGG | - | chr1.2:59536976-59536995 | None:intergenic | 45.0% | |
| GAACAGAAACTTGACTGTGG+TGG | + | chr1.2:59535955-59535974 | MS.gene40797:CDS | 45.0% | |
| GAACGAGAGAGAGAAGGTTA+GGG | - | chr1.2:59534653-59534672 | None:intergenic | 45.0% | |
| GAGATGAATGGACACAGCAA+TGG | - | chr1.2:59536722-59536741 | None:intergenic | 45.0% | |
| GAGCTCATCCTGCAAACAAA+AGG | - | chr1.2:59537829-59537848 | None:intergenic | 45.0% | |
| GCCAGAAGATTGGGATGATA+AGG | + | chr1.2:59536510-59536529 | MS.gene40797:intron | 45.0% | |
| GTTCCCTGAATTCAGCAACA+AGG | + | chr1.2:59535897-59535916 | MS.gene40797:CDS | 45.0% | |
| TAAGCACCTGTGAGACTCTA+TGG | + | chr1.2:59535320-59535339 | MS.gene40797:intron | 45.0% | |
| TACACCTCTGGTCAATGGAA+TGG | + | chr1.2:59535701-59535720 | MS.gene40797:CDS | 45.0% | |
| TATGTTCTTGCAGGCTGAGA+AGG | + | chr1.2:59537441-59537460 | MS.gene40797:intron | 45.0% | |
| TCAGGATCAGCAACCTCTTT+AGG | - | chr1.2:59536677-59536696 | None:intergenic | 45.0% | |
| TCCACTTTCCACTGTAGTTG+GGG | - | chr1.2:59536974-59536993 | None:intergenic | 45.0% | |
| TCTTCCGCATCAGAATCAAC+GGG | - | chr1.2:59537628-59537647 | None:intergenic | 45.0% | |
| TGATCTGAACTGTCGTTGTC+TGG | + | chr1.2:59534940-59534959 | MS.gene40797:intron | 45.0% | |
| TGCTGATCCTGATGCCAAAA+AGG | + | chr1.2:59536685-59536704 | MS.gene40797:CDS | 45.0% | |
| ! | GCAACTTGCTTAGCATACTC+GGG | - | chr1.2:59537316-59537335 | None:intergenic | 45.0% |
| ! | GGGTCCTTGATTTTCTTTGG+TGG | - | chr1.2:59536380-59536399 | None:intergenic | 45.0% |
| ! | TGTTGGCATTGAATTGTGGC+AGG | + | chr1.2:59537159-59537178 | MS.gene40797:CDS | 45.0% |
| !! | TGATCCCGTTGATTCTGATG+CGG | + | chr1.2:59537621-59537640 | MS.gene40797:CDS | 45.0% |
| !! | TTTCCCCTCCTTTTGTTTGC+AGG | + | chr1.2:59537818-59537837 | MS.gene40797:intron | 45.0% |
| ACCCCAACTACAGTGGAAAG+TGG | + | chr1.2:59536970-59536989 | MS.gene40797:CDS | 50.0% | |
| AGAAGGATGAGAACTTGGCC+GGG | + | chr1.2:59535669-59535688 | MS.gene40797:CDS | 50.0% | |
| CAGAAACTTGACTGTGGTGG+TGG | + | chr1.2:59535958-59535977 | MS.gene40797:CDS | 50.0% | |
| CATTGCCAACCCAGAGTACA+AGG | + | chr1.2:59536832-59536851 | MS.gene40797:CDS | 50.0% | |
| CGCAGAAGCGATGGATAGAA+GGG | - | chr1.2:59534682-59534701 | None:intergenic | 50.0% | |
| GAAAACCTTCGCAGAAGCGA+TGG | - | chr1.2:59534691-59534710 | None:intergenic | 50.0% | |
| GACTGGGATGATGAGGAAGA+TGG | + | chr1.2:59536791-59536810 | MS.gene40797:CDS | 50.0% | |
| GATGAGTCAAAGGCAGAAGC+TGG | + | chr1.2:59537688-59537707 | MS.gene40797:CDS | 50.0% | |
| GCCGGTGGGTAAAATCTGAA+TGG | + | chr1.2:59535645-59535664 | MS.gene40797:CDS | 50.0% | |
| GGAACTACACCTCTGGTCAA+TGG | + | chr1.2:59535696-59535715 | MS.gene40797:CDS | 50.0% | |
| GTAAGCTGGTCAGTCTCACA+AGG | - | chr1.2:59536254-59536273 | None:intergenic | 50.0% | |
| GTCACCATTCCATTGACCAG+AGG | - | chr1.2:59535708-59535727 | None:intergenic | 50.0% | |
| TCCATGGTCCCTTGTACTCT+GGG | - | chr1.2:59536844-59536863 | None:intergenic | 50.0% | |
| TCGCAGAAGCGATGGATAGA+AGG | - | chr1.2:59534683-59534702 | None:intergenic | 50.0% | |
| TCTATCCATCGCTTCTGCGA+AGG | + | chr1.2:59534683-59534702 | MS.gene40797:CDS | 50.0% | |
| TGCTGTAGGTTGCATCAGGA+CGG | - | chr1.2:59536298-59536317 | None:intergenic | 50.0% | |
| TGTTGTGTAGCCTGAGGACT+GGG | + | chr1.2:59536775-59536794 | MS.gene40797:intron | 50.0% | |
| TTCAGGGAACTCAGCAGAGA+TGG | - | chr1.2:59535887-59535906 | None:intergenic | 50.0% | |
| TTCCATGGTCCCTTGTACTC+TGG | - | chr1.2:59536845-59536864 | None:intergenic | 50.0% | |
| TTCTGATGCGGAAGAGGATG+AGG | + | chr1.2:59537633-59537652 | MS.gene40797:CDS | 50.0% | |
| TTGTTGTGTAGCCTGAGGAC+TGG | + | chr1.2:59536774-59536793 | MS.gene40797:intron | 50.0% | |
| ! | ACCTCTGGCTTCTTGTCTTC+AGG | - | chr1.2:59536550-59536569 | None:intergenic | 50.0% |
| ! | CCTCTGGCTTCTTGTCTTCA+GGG | - | chr1.2:59536549-59536568 | None:intergenic | 50.0% |
| ! | GCACCATTGATTGACAACCC+AGG | + | chr1.2:59536996-59537015 | MS.gene40797:CDS | 50.0% |
| !! | AGGGTACCTTTTTGGCCTCT+GGG | - | chr1.2:59536400-59536419 | None:intergenic | 50.0% |
| !! | CGTTGATTCTGATGCGGAAG+AGG | + | chr1.2:59537627-59537646 | MS.gene40797:CDS | 50.0% |
| !! | CTTGTACTCTGGGTTGGCAA+TGG | - | chr1.2:59536834-59536853 | None:intergenic | 50.0% |
| !! | TACTCTGGGTTGGCAATGGT+AGG | - | chr1.2:59536830-59536849 | None:intergenic | 50.0% |
| !! | TTCTTCGAAGAGCGCTTCGA+AGG | + | chr1.2:59534708-59534727 | MS.gene40797:CDS | 50.0% |
| !!! | AAGGGTACCTTTTTGGCCTC+TGG | - | chr1.2:59536401-59536420 | None:intergenic | 50.0% |
| AAGATGGATGGGAAAGCCGG+TGG | + | chr1.2:59535630-59535649 | MS.gene40797:intron | 55.0% | |
| ACCCAGAGTACAAGGGACCA+TGG | + | chr1.2:59536840-59536859 | MS.gene40797:CDS | 55.0% | |
| AGATGGATGGGAAAGCCGGT+GGG | + | chr1.2:59535631-59535650 | MS.gene40797:intron | 55.0% | |
| CAAGGACCCAGAGGCCAAAA+AGG | + | chr1.2:59536391-59536410 | MS.gene40797:CDS | 55.0% | |
| CAAGGGACCATGGAAGCCAA+AGG | + | chr1.2:59536850-59536869 | MS.gene40797:CDS | 55.0% | |
| CCCTGAAGACAAGAAGCCAG+AGG | + | chr1.2:59536546-59536565 | MS.gene40797:CDS | 55.0% | |
| GAAGGATGAGAACTTGGCCG+GGG | + | chr1.2:59535670-59535689 | MS.gene40797:CDS | 55.0% | |
| GGCTTCTTGTCTTCAGGGTC+AGG | - | chr1.2:59536544-59536563 | None:intergenic | 55.0% | |
| TCAGGGTCGTCCTTGAAGTC+TGG | - | chr1.2:59537112-59537131 | None:intergenic | 55.0% | |
| TCCTCATCATCCCAGTCCTC+AGG | - | chr1.2:59536788-59536807 | None:intergenic | 55.0% | |
| TGGTCCCTTGTACTCTGGGT+TGG | - | chr1.2:59536840-59536859 | None:intergenic | 55.0% | |
| TTGGCGGTGATACTCCCTAC+AGG | + | chr1.2:59536022-59536041 | MS.gene40797:CDS | 55.0% | |
| ! | AGAGGTGTAGTTCCACTCCC+CGG | - | chr1.2:59535690-59535709 | None:intergenic | 55.0% |
| ATGAGAACTTGGCCGGGGAG+TGG | + | chr1.2:59535675-59535694 | MS.gene40797:CDS | 60.0% | |
| GCCTGAGGACTGGGATGATG+AGG | + | chr1.2:59536784-59536803 | MS.gene40797:intron | 60.0% | |
| GGGGAGTGGAACTACACCTC+TGG | + | chr1.2:59535689-59535708 | MS.gene40797:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59534630 | 59537851 | 59534630 | ID=MS.gene40797 |
| chr1.2 | mRNA | 59534630 | 59537851 | 59534630 | ID=MS.gene40797.t1;Parent=MS.gene40797 |
| chr1.2 | exon | 59534630 | 59534729 | 59534630 | ID=MS.gene40797.t1.exon1;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59534630 | 59534729 | 59534630 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59535633 | 59535740 | 59535633 | ID=MS.gene40797.t1.exon2;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59535633 | 59535740 | 59535633 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59535851 | 59536043 | 59535851 | ID=MS.gene40797.t1.exon3;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59535851 | 59536043 | 59535851 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59536154 | 59536412 | 59536154 | ID=MS.gene40797.t1.exon4;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59536154 | 59536412 | 59536154 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59536511 | 59536567 | 59536511 | ID=MS.gene40797.t1.exon5;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59536511 | 59536567 | 59536511 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59536659 | 59536706 | 59536659 | ID=MS.gene40797.t1.exon6;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59536659 | 59536706 | 59536659 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59536785 | 59536871 | 59536785 | ID=MS.gene40797.t1.exon7;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59536785 | 59536871 | 59536785 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59536960 | 59537017 | 59536960 | ID=MS.gene40797.t1.exon8;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59536960 | 59537017 | 59536960 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59537113 | 59537180 | 59537113 | ID=MS.gene40797.t1.exon9;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59537113 | 59537180 | 59537113 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59537268 | 59537363 | 59537268 | ID=MS.gene40797.t1.exon10;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59537268 | 59537363 | 59537268 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59537454 | 59537501 | 59537454 | ID=MS.gene40797.t1.exon11;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59537454 | 59537501 | 59537454 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59537610 | 59537750 | 59537610 | ID=MS.gene40797.t1.exon12;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59537610 | 59537750 | 59537610 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| chr1.2 | exon | 59537840 | 59537851 | 59537840 | ID=MS.gene40797.t1.exon13;Parent=MS.gene40797.t1 |
| chr1.2 | CDS | 59537840 | 59537851 | 59537840 | ID=cds.MS.gene40797.t1;Parent=MS.gene40797.t1 |
| Gene Sequence |
| Protein sequence |
