Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44181.t1 | XP_003591212.1 | 99.5 | 364 | 2 | 0 | 27 | 390 | 1 | 364 | 1.70E-165 | 592.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44181.t1 | O81919 | 90.1 | 365 | 35 | 1 | 27 | 390 | 1 | 365 | 2.1e-151 | 537.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44181.t1 | G7I9H2 | 99.5 | 364 | 2 | 0 | 27 | 390 | 1 | 364 | 1.2e-165 | 592.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050894 | MS.gene44181 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene052143 | MS.gene44181 | 0.815957 | 7.08E-52 | -1.69E-46 |
| MS.gene052169 | MS.gene44181 | 0.855142 | 7.69E-62 | -1.69E-46 |
| MS.gene052275 | MS.gene44181 | 0.814117 | 1.81E-51 | -1.69E-46 |
| MS.gene052308 | MS.gene44181 | 0.800794 | 1.22E-48 | -1.69E-46 |
| MS.gene052367 | MS.gene44181 | 0.854716 | 1.02E-61 | -1.69E-46 |
| MS.gene052494 | MS.gene44181 | 0.815283 | 1.00E-51 | -1.69E-46 |
| MS.gene053097 | MS.gene44181 | 0.812703 | 3.71E-51 | -1.69E-46 |
| MS.gene053173 | MS.gene44181 | 0.8131 | 3.04E-51 | -1.69E-46 |
| MS.gene054633 | MS.gene44181 | 0.802353 | 5.84E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene44181 | 0.850642 | 1.49E-60 | -1.69E-46 |
| MS.gene056266 | MS.gene44181 | -0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene44181 | 0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene44181 | 0.817831 | 2.69E-52 | -1.69E-46 |
| MS.gene05732 | MS.gene44181 | 0.845004 | 5.32E-59 | -1.69E-46 |
| MS.gene057367 | MS.gene44181 | 0.828474 | 8.81E-55 | -1.69E-46 |
| MS.gene058827 | MS.gene44181 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene060473 | MS.gene44181 | 0.803105 | 4.09E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene44181 | 0.848223 | 7.03E-60 | -1.69E-46 |
| MS.gene061260 | MS.gene44181 | 0.826867 | 2.14E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44181 | MS.gene006458 | PPI |
| MS.gene003867 | MS.gene44181 | PPI |
| MS.gene056598 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene93050 | PPI |
| MS.gene44181 | MS.gene26890 | PPI |
| MS.gene44181 | MS.gene33573 | PPI |
| MS.gene44181 | MS.gene52596 | PPI |
| MS.gene008784 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene30421 | PPI |
| MS.gene44181 | MS.gene056396 | PPI |
| MS.gene40797 | MS.gene44181 | PPI |
| MS.gene072925 | MS.gene44181 | PPI |
| MS.gene005307 | MS.gene44181 | PPI |
| MS.gene32605 | MS.gene44181 | PPI |
| MS.gene024055 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene051100 | PPI |
| MS.gene44181 | MS.gene28326 | PPI |
| MS.gene074437 | MS.gene44181 | PPI |
| MS.gene95690 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene32606 | PPI |
| MS.gene072924 | MS.gene44181 | PPI |
| MS.gene32604 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene014807 | PPI |
| MS.gene014809 | MS.gene44181 | PPI |
| MS.gene80048 | MS.gene44181 | PPI |
| MS.gene44181 | MS.gene056500 | PPI |
| MS.gene44181 | MS.gene014808 | PPI |
| MS.gene25107 | MS.gene44181 | PPI |
| MS.gene072926 | MS.gene44181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44181.t1 | MTR_1g083960 | 99.292 | 424 | 2 | 1 | 27 | 450 | 1 | 423 | 0.0 | 844 |
| MS.gene44181.t1 | MTR_7g080370 | 63.897 | 349 | 124 | 1 | 36 | 382 | 9 | 357 | 3.67e-171 | 486 |
| MS.gene44181.t1 | MTR_7g080370 | 63.897 | 349 | 124 | 1 | 36 | 382 | 9 | 357 | 4.06e-171 | 487 |
| MS.gene44181.t1 | MTR_4g068080 | 61.538 | 351 | 135 | 0 | 27 | 377 | 1 | 351 | 5.21e-166 | 474 |
| MS.gene44181.t1 | MTR_8g095680 | 38.795 | 415 | 185 | 14 | 27 | 379 | 1 | 408 | 3.46e-62 | 211 |
| MS.gene44181.t1 | MTR_3g098430 | 36.408 | 412 | 196 | 14 | 27 | 379 | 1 | 405 | 5.60e-60 | 205 |
| MS.gene44181.t1 | MTR_3g098430 | 36.408 | 412 | 196 | 14 | 27 | 379 | 1 | 405 | 7.60e-60 | 204 |
| MS.gene44181.t1 | MTR_3g096590 | 75.238 | 105 | 19 | 3 | 346 | 450 | 363 | 460 | 6.96e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44181.t1 | AT1G09210 | 79.952 | 419 | 82 | 2 | 34 | 450 | 6 | 424 | 0.0 | 623 |
| MS.gene44181.t1 | AT1G56340 | 84.958 | 359 | 54 | 0 | 33 | 391 | 5 | 363 | 0.0 | 620 |
| MS.gene44181.t1 | AT1G56340 | 84.533 | 375 | 58 | 0 | 33 | 407 | 5 | 379 | 0.0 | 618 |
| MS.gene44181.t1 | AT1G08450 | 58.197 | 366 | 153 | 0 | 36 | 401 | 14 | 379 | 3.59e-165 | 472 |
| MS.gene44181.t1 | AT1G08450 | 52.732 | 366 | 148 | 1 | 36 | 401 | 14 | 354 | 1.97e-143 | 416 |
| MS.gene44181.t1 | AT1G08450 | 43.243 | 370 | 148 | 3 | 36 | 401 | 14 | 325 | 2.88e-104 | 315 |
| MS.gene44181.t1 | AT5G61790 | 38.384 | 396 | 185 | 12 | 36 | 379 | 13 | 401 | 1.26e-71 | 235 |
| MS.gene44181.t1 | AT5G07340 | 37.046 | 413 | 191 | 14 | 45 | 402 | 22 | 420 | 4.53e-57 | 197 |
| MS.gene44181.t1 | AT5G07340 | 37.592 | 407 | 184 | 15 | 51 | 402 | 37 | 428 | 6.99e-57 | 197 |
Find 139 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCTGGCTTCTTGTCTTC+AGG | 0.169701 | 1.3:+59588703 | None:intergenic |
| TTCCATGGTCCCTTGTACTC+TGG | 0.182700 | 1.3:+59588408 | None:intergenic |
| GTTCATGCTTGACAGAAAAT+TGG | 0.241397 | 1.3:+59589314 | None:intergenic |
| TTATCCTTGTTGCTGAATTC+AGG | 0.265305 | 1.3:+59589349 | None:intergenic |
| ATGTACGTCGTCCTCTTTAT+TGG | 0.266525 | 1.3:+59587526 | None:intergenic |
| TTCCACTTTCCACTGTAGTT+GGG | 0.290555 | 1.3:+59588278 | None:intergenic |
| TCAGGATCAGCAACCTCTTT+AGG | 0.312415 | 1.3:+59588576 | None:intergenic |
| TTCCATTGCAATGGCGATTA+GGG | 0.314157 | 1.3:-59590631 | MS.gene44181:CDS |
| AGAACGAGAGAGAGAAGGTT+AGG | 0.314409 | 1.3:+59590600 | None:intergenic |
| CTTCCACTTTCCACTGTAGT+TGG | 0.316605 | 1.3:+59588277 | None:intergenic |
| GATGTTGATCAGAAGAAATT+TGG | 0.323562 | 1.3:-59589247 | MS.gene44181:CDS |
| CCTCTGGCTTCTTGTCTTCA+GGG | 0.335164 | 1.3:+59588704 | None:intergenic |
| ATTCCATTGCAATGGCGATT+AGG | 0.335328 | 1.3:-59590632 | MS.gene44181:CDS |
| CAAGGACCCAGAGGCCAAAA+AGG | 0.346525 | 1.3:-59588859 | MS.gene44181:intron |
| GGCTTCTTGTCTTCAGGGTC+AGG | 0.351167 | 1.3:+59588709 | None:intergenic |
| TCCTTATCATCCCAATCTTC+TGG | 0.358229 | 1.3:+59588739 | None:intergenic |
| GTACTGTAACCACAGATATC+TGG | 0.359127 | 1.3:+59589083 | None:intergenic |
| TGCTGATCCTGATGCCAAAA+AGG | 0.359945 | 1.3:-59588565 | MS.gene44181:intron |
| TCCATGGTCCCTTGTACTCT+GGG | 0.365819 | 1.3:+59588409 | None:intergenic |
| TCGCAGAAGCGATGGATAGA+AGG | 0.367240 | 1.3:+59590571 | None:intergenic |
| TTAACTTTGCAGGTGAAATC+TGG | 0.376979 | 1.3:-59587994 | MS.gene44181:intron |
| TTGTTTGCAGGATGAGCTCT+AGG | 0.388195 | 1.3:-59587424 | None:intergenic |
| TATATATTTACCAGACTTCA+AGG | 0.404034 | 1.3:-59588151 | MS.gene44181:intron |
| AGCAACTTGCTTAGCATACT+CGG | 0.412572 | 1.3:+59587936 | None:intergenic |
| AATACTTACAGCCAGAAGAT+TGG | 0.416134 | 1.3:-59588750 | MS.gene44181:intron |
| GAACATCCTTCTTGATTAAG+TGG | 0.416832 | 1.3:+59589021 | None:intergenic |
| ATGCCAACATACTTCAACTT+GGG | 0.437777 | 1.3:+59588105 | None:intergenic |
| ATACTTACAGCCAGAAGATT+GGG | 0.440491 | 1.3:-59588749 | MS.gene44181:intron |
| TTGCAATGGCGATTAGGGTT+CGG | 0.442463 | 1.3:-59590626 | MS.gene44181:CDS |
| TATCCTTGTTGCTGAATTCA+GGG | 0.448897 | 1.3:+59589350 | None:intergenic |
| ATAAAATCTGTAATCTTCAC+TGG | 0.449401 | 1.3:+59589390 | None:intergenic |
| AAACAAACCTTTGGCTTCCA+TGG | 0.453885 | 1.3:+59588393 | None:intergenic |
| AGAGTCATGGCTAACTTCAT+TGG | 0.454725 | 1.3:+59587592 | None:intergenic |
| TAAGTGGTTTGTGTCATTGT+AGG | 0.461585 | 1.3:+59589037 | None:intergenic |
| GCCAGAAGATTGGGATGATA+AGG | 0.462026 | 1.3:-59588740 | MS.gene44181:CDS |
| CATTGCCAACCCAGAGTACA+AGG | 0.463149 | 1.3:-59588418 | MS.gene44181:CDS |
| TCCACTTTCCACTGTAGTTG+GGG | 0.465244 | 1.3:+59588279 | None:intergenic |
| CTGGTAGTCTTTACTCTGAC+TGG | 0.467326 | 1.3:-59588905 | MS.gene44181:CDS |
| CGTTGATTCTGATGCGGAAG+AGG | 0.469655 | 1.3:-59587627 | MS.gene44181:CDS |
| TTGGGGAAAACATAGATGTC+AGG | 0.470534 | 1.3:+59588123 | None:intergenic |
| AGAAACATGGGGCAAGCAAA+AGG | 0.486201 | 1.3:-59587911 | MS.gene44181:CDS |
| AGAAGGATGAGAACTTGGCC+GGG | 0.487362 | 1.3:-59589581 | MS.gene44181:CDS |
| ATGAGAACTTGGCCGGGGAG+TGG | 0.492077 | 1.3:-59589575 | MS.gene44181:CDS |
| AAAATGCTGTAGGTTGCATC+AGG | 0.493543 | 1.3:+59588951 | None:intergenic |
| CGCAGAAGCGATGGATAGAA+GGG | 0.494372 | 1.3:+59590572 | None:intergenic |
| TCCTCATCATCCCAGTCCTC+AGG | 0.495577 | 1.3:+59588465 | None:intergenic |
| GATAACGTTGAGAAGCAAAC+TGG | 0.496012 | 1.3:-59588924 | MS.gene44181:CDS |
| TTCCCCAAGTTGAAGTATGT+TGG | 0.497182 | 1.3:-59588108 | MS.gene44181:CDS |
| CTTGTACTCTGGGTTGGCAA+TGG | 0.498402 | 1.3:+59588419 | None:intergenic |
| GAAAACCTTCGCAGAAGCGA+TGG | 0.502839 | 1.3:+59590563 | None:intergenic |
| AGCAAGTTGCTGAAGAAACA+TGG | 0.506018 | 1.3:-59587924 | MS.gene44181:CDS |
| TATGTTCTTGCAGGCTGAGA+AGG | 0.508527 | 1.3:-59587813 | MS.gene44181:intron |
| TTCTTCGAAGAGCGCTTCGA+AGG | 0.509596 | 1.3:-59590543 | MS.gene44181:intron |
| TTCTGATGCGGAAGAGGATG+AGG | 0.510129 | 1.3:-59587621 | MS.gene44181:CDS |
| ATGGAAGAAGGATGAGAACT+TGG | 0.515979 | 1.3:-59589586 | MS.gene44181:CDS |
| TCTATCCATCGCTTCTGCGA+AGG | 0.516389 | 1.3:-59590568 | MS.gene44181:CDS |
| AAGAAGGATGAGAACTTGGC+CGG | 0.516801 | 1.3:-59589582 | MS.gene44181:CDS |
| AATGCCAACATACTTCAACT+TGG | 0.516939 | 1.3:+59588104 | None:intergenic |
| GGAACTACACCTCTGGTCAA+TGG | 0.518922 | 1.3:-59589554 | MS.gene44181:CDS |
| CTCTTCCGCATCAGAATCAA+CGG | 0.521513 | 1.3:+59587628 | None:intergenic |
| TTCAGGGAACTCAGCAGAGA+TGG | 0.522780 | 1.3:+59589366 | None:intergenic |
| GGTAAAATCTGAATGGAAGA+AGG | 0.524814 | 1.3:-59589598 | MS.gene44181:CDS |
| TGGTCCCTTGTACTCTGGGT+TGG | 0.525060 | 1.3:+59588413 | None:intergenic |
| CATTGGGTGAGTGCCACGTA+GGG | 0.525419 | 1.3:+59590828 | None:intergenic |
| GAACGAGAGAGAGAAGGTTA+GGG | 0.525740 | 1.3:+59590601 | None:intergenic |
| AAACCTGGGTTGTCAATCAA+TGG | 0.532475 | 1.3:+59588251 | None:intergenic |
| TGTTGTGTAGCCTGAGGACT+GGG | 0.537049 | 1.3:-59588475 | MS.gene44181:intron |
| AACCCTAATCGCCATTGCAA+TGG | 0.540276 | 1.3:+59590629 | None:intergenic |
| CCATTGGGTGAGTGCCACGT+AGG | 0.542796 | 1.3:+59590827 | None:intergenic |
| TGTGGCAGATTGTGGCCATT+GGG | 0.544843 | 1.3:+59590812 | None:intergenic |
| TCTTCCGCATCAGAATCAAC+GGG | 0.545764 | 1.3:+59587629 | None:intergenic |
| CACAAACCACTTAATCAAGA+AGG | 0.545807 | 1.3:-59589027 | MS.gene44181:CDS |
| GGGGAGTGGAACTACACCTC+TGG | 0.546989 | 1.3:-59589561 | MS.gene44181:CDS |
| ATGTGGCAGATTGTGGCCAT+TGG | 0.547859 | 1.3:+59590811 | None:intergenic |
| GCAACTTGCTTAGCATACTC+GGG | 0.550973 | 1.3:+59587937 | None:intergenic |
| CTAAAGATGGATGGGAAAGC+CGG | 0.553813 | 1.3:-59589623 | MS.gene44181:intron |
| GCCGGTGGGTAAAATCTGAA+TGG | 0.553831 | 1.3:-59589605 | MS.gene44181:CDS |
| GTTATCAATCAAAATGCTGT+AGG | 0.554637 | 1.3:+59588941 | None:intergenic |
| TGTTTGCAGGATGAGCTCTA+GGG | 0.555016 | 1.3:-59587423 | None:intergenic |
| TGTTGAATGCTAAAGATGGA+TGG | 0.555665 | 1.3:-59589632 | MS.gene44181:intron |
| ACCCCAACTACAGTGGAAAG+TGG | 0.558201 | 1.3:-59588280 | MS.gene44181:CDS |
| TTGTTGTGTAGCCTGAGGAC+TGG | 0.566755 | 1.3:-59588476 | MS.gene44181:intron |
| CAGCGATGAAACCAATAAAG+AGG | 0.572191 | 1.3:-59587537 | MS.gene44181:CDS |
| CTTAGCATACTCGGGATCAT+CGG | 0.572247 | 1.3:+59587945 | None:intergenic |
| ACGTAGGGGAAGATTGTCAT+TGG | 0.573473 | 1.3:+59590843 | None:intergenic |
| AGAAAAGAACGAGAGAGAGA+AGG | 0.573982 | 1.3:+59590595 | None:intergenic |
| TGACTCTGATGATGAGTCAA+AGG | 0.575775 | 1.3:-59587576 | MS.gene44181:CDS |
| ATACGATGACATTCCTAAAG+AGG | 0.576967 | 1.3:-59588589 | MS.gene44181:CDS |
| GATATTATAAATCACCTGTA+GGG | 0.577404 | 1.3:+59589214 | None:intergenic |
| TCTCCCACCAAAGAAAATCA+AGG | 0.577520 | 1.3:-59588877 | MS.gene44181:CDS |
| TTGGCGGTGATACTCCCTAC+AGG | 0.578535 | 1.3:-59589228 | MS.gene44181:intron |
| GTTGAATGCTAAAGATGGAT+GGG | 0.579079 | 1.3:-59589631 | MS.gene44181:intron |
| CAGAAACTTGACTGTGGTGG+TGG | 0.579680 | 1.3:-59589292 | MS.gene44181:CDS |
| GTTGATCAGAAGAAATTTGG+CGG | 0.581881 | 1.3:-59589244 | MS.gene44181:CDS |
| AGAGGTGTAGTTCCACTCCC+CGG | 0.582515 | 1.3:+59589563 | None:intergenic |
| AACTCATTGTCAGGAAACAA+AGG | 0.583402 | 1.3:-59587657 | MS.gene44181:intron |
| AGCTGAGAAGAAGAAAGAAG+AGG | 0.584374 | 1.3:-59587777 | MS.gene44181:CDS |
| GGTTACATGAAGTTGCTTAG+CGG | 0.587170 | 1.3:-59589271 | MS.gene44181:CDS |
| GCAAGTTGCTGAAGAAACAT+GGG | 0.587236 | 1.3:-59587923 | MS.gene44181:CDS |
| TGCTGTAGGTTGCATCAGGA+CGG | 0.587388 | 1.3:+59588955 | None:intergenic |
| GATGAGTCAAAGGCAGAAGC+TGG | 0.589511 | 1.3:-59587566 | MS.gene44181:CDS |
| GACTGGGATGATGAGGAAGA+TGG | 0.589626 | 1.3:-59588459 | MS.gene44181:CDS |
| AGCGAGCGATTCCATTGCAA+TGG | 0.589635 | 1.3:-59590640 | MS.gene44181:CDS |
| TGTTGGCATTGAATTGTGGC+AGG | 0.591537 | 1.3:-59588091 | MS.gene44181:intron |
| GAAGGATGAGAACTTGGCCG+GGG | 0.593588 | 1.3:-59589580 | MS.gene44181:CDS |
| GGACAATATGTGGCAGATTG+TGG | 0.594348 | 1.3:+59590804 | None:intergenic |
| TTGACTCATCATCAGAGTCA+TGG | 0.601599 | 1.3:+59587579 | None:intergenic |
| CCTACGTGGCACTCACCCAA+TGG | 0.602812 | 1.3:-59590827 | MS.gene44181:CDS |
| TACTCTGGGTTGGCAATGGT+AGG | 0.604644 | 1.3:+59588423 | None:intergenic |
| TACACCTCTGGTCAATGGAA+TGG | 0.606107 | 1.3:-59589549 | MS.gene44181:CDS |
| TGCCAACATACTTCAACTTG+GGG | 0.607807 | 1.3:+59588106 | None:intergenic |
| AAGATGGATGGGAAAGCCGG+TGG | 0.610833 | 1.3:-59589620 | MS.gene44181:CDS |
| TTGCTTACGTGGACAATATG+TGG | 0.610903 | 1.3:+59590794 | None:intergenic |
| TGAGAAGAAGAAAGAAGAGG+AGG | 0.621039 | 1.3:-59587774 | MS.gene44181:intron |
| GCCTGAGGACTGGGATGATG+AGG | 0.621427 | 1.3:-59588466 | MS.gene44181:CDS |
| CAACTACAGTGGAAAGTGGA+AGG | 0.622242 | 1.3:-59588276 | MS.gene44181:CDS |
| TGGGGAAAACATAGATGTCA+GGG | 0.628802 | 1.3:+59588124 | None:intergenic |
| ATGTGTAAACATGAGTAAGC+TGG | 0.631281 | 1.3:+59588985 | None:intergenic |
| ATCAAGAACCCCAACTACAG+TGG | 0.637028 | 1.3:-59588287 | MS.gene44181:CDS |
| ACCCAGAGTACAAGGGACCA+TGG | 0.641246 | 1.3:-59588410 | MS.gene44181:CDS |
| GTAAGCTGGTCAGTCTCACA+AGG | 0.646980 | 1.3:+59588999 | None:intergenic |
| AGTATGTTGGCATTGAATTG+TGG | 0.647006 | 1.3:-59588095 | MS.gene44181:CDS |
| ATGATGAGGAAGATGGTGAG+TGG | 0.647034 | 1.3:-59588452 | MS.gene44181:CDS |
| AATGGTGACGCTAATGACAA+AGG | 0.650029 | 1.3:-59589531 | MS.gene44181:intron |
| ATGTTTGGTCCAGATATCTG+TGG | 0.653875 | 1.3:-59589092 | MS.gene44181:CDS |
| CAAGGGACCATGGAAGCCAA+AGG | 0.658097 | 1.3:-59588400 | MS.gene44181:intron |
| TGATCCCGTTGATTCTGATG+CGG | 0.665412 | 1.3:-59587633 | MS.gene44181:CDS |
| ATTGGGTGAGTGCCACGTAG+GGG | 0.665789 | 1.3:+59590829 | None:intergenic |
| GCACCATTGATTGACAACCC+AGG | 0.669589 | 1.3:-59588254 | MS.gene44181:intron |
| AAAGAAAATCAAGGACCCAG+AGG | 0.673165 | 1.3:-59588868 | MS.gene44181:CDS |
| GTTCCCTGAATTCAGCAACA+AGG | 0.674436 | 1.3:-59589353 | MS.gene44181:CDS |
| AGATGGATGGGAAAGCCGGT+GGG | 0.676998 | 1.3:-59589619 | MS.gene44181:CDS |
| CCCTGAAGACAAGAAGCCAG+AGG | 0.683823 | 1.3:-59588704 | MS.gene44181:intron |
| CAAGTTGCTGAAGAAACATG+GGG | 0.696192 | 1.3:-59587922 | MS.gene44181:CDS |
| GTCACCATTCCATTGACCAG+AGG | 0.697163 | 1.3:+59589545 | None:intergenic |
| AATGACAATCTTCCCCTACG+TGG | 0.721639 | 1.3:-59590841 | MS.gene44181:CDS |
| ATTGCCAACCCAGAGTACAA+GGG | 0.731176 | 1.3:-59588417 | MS.gene44181:CDS |
| GAACAGAAACTTGACTGTGG+TGG | 0.776860 | 1.3:-59589295 | MS.gene44181:CDS |
| CATGAACAGAAACTTGACTG+TGG | 0.796573 | 1.3:-59589298 | MS.gene44181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGCAGTGATAATATTA+TGG | + | chr1.3:59588469-59588488 | None:intergenic | 20.0% |
| !! | ACATTCATGTTTGTAATTTA+TGG | - | chr1.3:59587814-59587833 | MS.gene44181:intron | 20.0% |
| !! | ATAATATAATGAGAGATGAA+TGG | + | chr1.3:59589749-59589768 | None:intergenic | 20.0% |
| !! | ATCAAAACACAAGTTAAAAA+AGG | + | chr1.3:59588607-59588626 | None:intergenic | 20.0% |
| !! | ATGAAATGAAAAAAGAGATA+TGG | + | chr1.3:59587762-59587781 | None:intergenic | 20.0% |
| !! | ATGATTAGAAATTAGAAAGT+AGG | + | chr1.3:59589489-59589508 | None:intergenic | 20.0% |
| !! | ATTCATCTCTCATTATATTA+TGG | - | chr1.3:59589748-59589767 | MS.gene44181:intron | 20.0% |
| !! | TCAAAACACAAGTTAAAAAA+GGG | + | chr1.3:59588606-59588625 | None:intergenic | 20.0% |
| !! | TGATATATTGCAATATGTTT+AGG | - | chr1.3:59589911-59589930 | MS.gene44181:intron | 20.0% |
| !!! | TTGATTTGTTTACTAACTTT+TGG | - | chr1.3:59589936-59589955 | MS.gene44181:intron | 20.0% |
| ! | AAAACTACCATTCTATAATC+CGG | + | chr1.3:59588190-59588209 | None:intergenic | 25.0% |
| ! | AATTTGATCTAATCCAAACA+AGG | - | chr1.3:59588443-59588462 | MS.gene44181:CDS | 25.0% |
| ! | ATAAAATCTGTAATCTTCAC+TGG | + | chr1.3:59588878-59588897 | None:intergenic | 25.0% |
| ! | ATACAAAAGCTTAGAGTAAA+AGG | + | chr1.3:59589592-59589611 | None:intergenic | 25.0% |
| ! | ATACTAAATAAACTCGAACA+TGG | + | chr1.3:59588538-59588557 | None:intergenic | 25.0% |
| ! | ATTATGTTGAATGCTAAAGA+TGG | - | chr1.3:59588629-59588648 | MS.gene44181:intron | 25.0% |
| ! | CAAAACACAAGTTAAAAAAG+GGG | + | chr1.3:59588605-59588624 | None:intergenic | 25.0% |
| ! | GATATTATAAATCACCTGTA+GGG | + | chr1.3:59589054-59589073 | None:intergenic | 25.0% |
| ! | GGATTGTAAACAAAATGAAA+TGG | + | chr1.3:59588117-59588136 | None:intergenic | 25.0% |
| ! | GGTTAATTAATCTTTGATCA+TGG | - | chr1.3:59588045-59588064 | MS.gene44181:intron | 25.0% |
| ! | GTAGGAATACATAAAACAAA+AGG | + | chr1.3:59589471-59589490 | None:intergenic | 25.0% |
| ! | TACATAAAACAAAAGGAATC+TGG | + | chr1.3:59589464-59589483 | None:intergenic | 25.0% |
| ! | TATATATTTACCAGACTTCA+AGG | - | chr1.3:59590114-59590133 | MS.gene44181:intron | 25.0% |
| ! | TATCTAATACACAACATAGT+AGG | + | chr1.3:59589628-59589647 | None:intergenic | 25.0% |
| ! | TGAAAAAAGAGATATGGAAA+TGG | + | chr1.3:59587756-59587775 | None:intergenic | 25.0% |
| ! | TGAAAGAGATAAAACTAGAA+GGG | + | chr1.3:59589076-59589095 | None:intergenic | 25.0% |
| !! | CAATCCTTTTAATCTCATTT+CGG | - | chr1.3:59588131-59588150 | MS.gene44181:CDS | 25.0% |
| !! | TAATTTTGCAGTATCATGTT+TGG | - | chr1.3:59589158-59589177 | MS.gene44181:intron | 25.0% |
| !! | TTTCTATTCACTCAATCTTT+TGG | - | chr1.3:59590388-59590407 | MS.gene44181:intron | 25.0% |
| !!! | ACATCAAGTTTTATTCCTTA+AGG | + | chr1.3:59590414-59590433 | None:intergenic | 25.0% |
| !!! | ATGTTGATTTGAAAACGATT+TGG | - | chr1.3:59588011-59588030 | MS.gene44181:intron | 25.0% |
| AAACTTGATGTTGATCTCTT+TGG | - | chr1.3:59590423-59590442 | MS.gene44181:intron | 30.0% | |
| AACTATAAACGTAGGTGAAA+AGG | + | chr1.3:59589435-59589454 | None:intergenic | 30.0% | |
| AATTACACAACAATGCACAA+AGG | + | chr1.3:59587852-59587871 | None:intergenic | 30.0% | |
| ACTAAAATGCTCAAATCAAG+TGG | + | chr1.3:59590227-59590246 | None:intergenic | 30.0% | |
| ACTATAAACGTAGGTGAAAA+GGG | + | chr1.3:59589434-59589453 | None:intergenic | 30.0% | |
| GATGTTGATCAGAAGAAATT+TGG | - | chr1.3:59589018-59589037 | MS.gene44181:CDS | 30.0% | |
| GGATATTATAAATCACCTGT+AGG | + | chr1.3:59589055-59589074 | None:intergenic | 30.0% | |
| GGCAATTAAACTATAAACGT+AGG | + | chr1.3:59589443-59589462 | None:intergenic | 30.0% | |
| GTGAAAGAGATAAAACTAGA+AGG | + | chr1.3:59589077-59589096 | None:intergenic | 30.0% | |
| GTTATCAATCAAAATGCTGT+AGG | + | chr1.3:59589327-59589346 | None:intergenic | 30.0% | |
| TCTGACATTCTGTATTTGTA+GGG | - | chr1.3:59589653-59589672 | MS.gene44181:intron | 30.0% | |
| TCTTCCGAAATGAGATTAAA+AGG | + | chr1.3:59588138-59588157 | None:intergenic | 30.0% | |
| TGAATTGAAAGATGATACTG+AGG | - | chr1.3:59588811-59588830 | MS.gene44181:intron | 30.0% | |
| ! | AATGACCAGCTTTTAATGAA+CGG | - | chr1.3:59588279-59588298 | MS.gene44181:CDS | 30.0% |
| ! | GGTAAATTTGGTAATTTACG+TGG | + | chr1.3:59587500-59587519 | None:intergenic | 30.0% |
| ! | TGTGATTGAATTTTCACGAT+CGG | - | chr1.3:59587879-59587898 | MS.gene44181:intron | 30.0% |
| !! | AAGGGGAAAATATTGATTTG+AGG | + | chr1.3:59588588-59588607 | None:intergenic | 30.0% |
| !! | GATAATATTATGGCCTTGTT+TGG | + | chr1.3:59588459-59588478 | None:intergenic | 30.0% |
| !!! | TTTCTTTCCTTTTTTCGTTG+AGG | - | chr1.3:59588507-59588526 | MS.gene44181:intron | 30.0% |
| AACTCATTGTCAGGAAACAA+AGG | - | chr1.3:59590608-59590627 | MS.gene44181:CDS | 35.0% | |
| AACTTCCTTAACTCATTGTC+AGG | - | chr1.3:59590599-59590618 | MS.gene44181:CDS | 35.0% | |
| AATAATTGTTGTGTAGCCTG+AGG | - | chr1.3:59589784-59589803 | MS.gene44181:intron | 35.0% | |
| AATACTTACAGCCAGAAGAT+TGG | - | chr1.3:59589515-59589534 | MS.gene44181:intron | 35.0% | |
| AATGCCAACATACTTCAACT+TGG | + | chr1.3:59590164-59590183 | None:intergenic | 35.0% | |
| ACAAACCGTTCATTAAAAGC+TGG | + | chr1.3:59588287-59588306 | None:intergenic | 35.0% | |
| ACACCAGCAACAATAAAACA+AGG | + | chr1.3:59588785-59588804 | None:intergenic | 35.0% | |
| ATACGATGACATTCCTAAAG+AGG | - | chr1.3:59589676-59589695 | MS.gene44181:intron | 35.0% | |
| ATACTTACAGCCAGAAGATT+GGG | - | chr1.3:59589516-59589535 | MS.gene44181:intron | 35.0% | |
| ATGCCAACATACTTCAACTT+GGG | + | chr1.3:59590163-59590182 | None:intergenic | 35.0% | |
| ATGCTATAAGCTGTGACTTA+CGG | + | chr1.3:59588415-59588434 | None:intergenic | 35.0% | |
| ATGTGTAAACATGAGTAAGC+TGG | + | chr1.3:59589283-59589302 | None:intergenic | 35.0% | |
| CAAATCAACATCATCACGTT+CGG | + | chr1.3:59588002-59588021 | None:intergenic | 35.0% | |
| CAAATGTTTGATATCTCCAC+AGG | - | chr1.3:59588844-59588863 | MS.gene44181:intron | 35.0% | |
| CACAAACCACTTAATCAAGA+AGG | - | chr1.3:59589238-59589257 | MS.gene44181:CDS | 35.0% | |
| CTAATACACAACATAGTAGG+TGG | + | chr1.3:59589625-59589644 | None:intergenic | 35.0% | |
| CTCTGACATTCTGTATTTGT+AGG | - | chr1.3:59589652-59589671 | MS.gene44181:intron | 35.0% | |
| GAACATCCTTCTTGATTAAG+TGG | + | chr1.3:59589247-59589266 | None:intergenic | 35.0% | |
| GGTAAAATCTGAATGGAAGA+AGG | - | chr1.3:59588667-59588686 | MS.gene44181:intron | 35.0% | |
| GTTCATGCTTGACAGAAAAT+TGG | + | chr1.3:59588954-59588973 | None:intergenic | 35.0% | |
| GTTGAATGCTAAAGATGGAT+GGG | - | chr1.3:59588634-59588653 | MS.gene44181:intron | 35.0% | |
| GTTGATCAGAAGAAATTTGG+CGG | - | chr1.3:59589021-59589040 | MS.gene44181:CDS | 35.0% | |
| TAACTTCAACTGCGAAAACA+AGG | + | chr1.3:59590049-59590068 | None:intergenic | 35.0% | |
| TATCCTTGTTGCTGAATTCA+GGG | + | chr1.3:59588918-59588937 | None:intergenic | 35.0% | |
| TGGTGAATATATGTTCTTGC+AGG | - | chr1.3:59590443-59590462 | MS.gene44181:intron | 35.0% | |
| TGTTGAATGCTAAAGATGGA+TGG | - | chr1.3:59588633-59588652 | MS.gene44181:intron | 35.0% | |
| TGTTTCCTGACAATGAGTTA+AGG | + | chr1.3:59590607-59590626 | None:intergenic | 35.0% | |
| TTAACTTTGCAGGTGAAATC+TGG | - | chr1.3:59590271-59590290 | MS.gene44181:intron | 35.0% | |
| TTATCCTTGTTGCTGAATTC+AGG | + | chr1.3:59588919-59588938 | None:intergenic | 35.0% | |
| TTGAAAGATGATACTGAGGT+TGG | - | chr1.3:59588815-59588834 | MS.gene44181:intron | 35.0% | |
| TTTCCACACAAACAAACCTT+TGG | + | chr1.3:59589884-59589903 | None:intergenic | 35.0% | |
| TTTGAATTGTGTTGTGTGTC+CGG | - | chr1.3:59588168-59588187 | MS.gene44181:intron | 35.0% | |
| TTTGTCTCTGTTTGTGTGTA+AGG | - | chr1.3:59588230-59588249 | MS.gene44181:intron | 35.0% | |
| ! | AGTATGTTGGCATTGAATTG+TGG | - | chr1.3:59590170-59590189 | MS.gene44181:intron | 35.0% |
| ! | ATTGTTTCTTTCAGTGCTGT+GGG | + | chr1.3:59587521-59587540 | None:intergenic | 35.0% |
| ! | TAAGTGGTTTGTGTCATTGT+AGG | + | chr1.3:59589231-59589250 | None:intergenic | 35.0% |
| ! | TGGGAAACAACTAACCTTTT+TGG | + | chr1.3:59589717-59589736 | None:intergenic | 35.0% |
| !! | AGAGTAAAAGGTATTACCTC+TGG | + | chr1.3:59589580-59589599 | None:intergenic | 35.0% |
| !!! | AACGATTTGGCACGTTTTTT+TGG | - | chr1.3:59588024-59588043 | MS.gene44181:intron | 35.0% |
| !!! | CAACCTTGTTTTATTGTTGC+TGG | - | chr1.3:59588779-59588798 | MS.gene44181:intron | 35.0% |
| !!! | CAGAATAGCGTGTACTTTTT+TGG | + | chr1.3:59589207-59589226 | None:intergenic | 35.0% |
| !!! | TAACTTTTGGTGTTACGTCT+TGG | - | chr1.3:59589949-59589968 | MS.gene44181:intron | 35.0% |
| AAAATGCTGTAGGTTGCATC+AGG | + | chr1.3:59589317-59589336 | None:intergenic | 40.0% | |
| AAACCTGGGTTGTCAATCAA+TGG | + | chr1.3:59590017-59590036 | None:intergenic | 40.0% | |
| AAAGAAAATCAAGGACCCAG+AGG | - | chr1.3:59589397-59589416 | MS.gene44181:CDS | 40.0% | |
| AATGAGAGTGAGAGCTACTT+TGG | + | chr1.3:59587587-59587606 | None:intergenic | 40.0% | |
| ACAAGGATGAAAAGCAAACC+TGG | + | chr1.3:59590032-59590051 | None:intergenic | 40.0% | |
| AGAAAAGAACGAGAGAGAGA+AGG | + | chr1.3:59587673-59587692 | None:intergenic | 40.0% | |
| AGAGTCATGGCTAACTTCAT+TGG | + | chr1.3:59590676-59590695 | None:intergenic | 40.0% | |
| AGATGAATGGACACAGCAAT+GGG | + | chr1.3:59589736-59589755 | None:intergenic | 40.0% | |
| AGCAAGCTACTTAACTTTGC+AGG | - | chr1.3:59590261-59590280 | MS.gene44181:intron | 40.0% | |
| AGCAAGTTGCTGAAGAAACA+TGG | - | chr1.3:59590341-59590360 | MS.gene44181:intron | 40.0% | |
| AGCTAACATGTGTCATGTCT+TGG | - | chr1.3:59589097-59589116 | MS.gene44181:CDS | 40.0% | |
| AGCTGAGAAGAAGAAAGAAG+AGG | - | chr1.3:59590488-59590507 | MS.gene44181:intron | 40.0% | |
| ATGGAAGAAGGATGAGAACT+TGG | - | chr1.3:59588679-59588698 | MS.gene44181:intron | 40.0% | |
| ATGTACGTCGTCCTCTTTAT+TGG | + | chr1.3:59590742-59590761 | None:intergenic | 40.0% | |
| ATGTTTGGTCCAGATATCTG+TGG | - | chr1.3:59589173-59589192 | MS.gene44181:intron | 40.0% | |
| ATTCCATTGCAATGGCGATT+AGG | - | chr1.3:59587633-59587652 | MS.gene44181:CDS | 40.0% | |
| CAAGGATGAAAAGCAAACCT+GGG | + | chr1.3:59590031-59590050 | None:intergenic | 40.0% | |
| CAAGTTGCTGAAGAAACATG+GGG | - | chr1.3:59590343-59590362 | MS.gene44181:intron | 40.0% | |
| CAGCGATGAAACCAATAAAG+AGG | - | chr1.3:59590728-59590747 | MS.gene44181:intron | 40.0% | |
| CATGAACAGAAACTTGACTG+TGG | - | chr1.3:59588967-59588986 | MS.gene44181:CDS | 40.0% | |
| GATAACGTTGAGAAGCAAAC+TGG | - | chr1.3:59589341-59589360 | MS.gene44181:CDS | 40.0% | |
| GCAAGTTGCTGAAGAAACAT+GGG | - | chr1.3:59590342-59590361 | MS.gene44181:intron | 40.0% | |
| GGACTATCCTCAACGAAAAA+AGG | + | chr1.3:59588517-59588536 | None:intergenic | 40.0% | |
| GGTTACATGAAGTTGCTTAG+CGG | - | chr1.3:59588994-59589013 | MS.gene44181:CDS | 40.0% | |
| GTACTGTAACCACAGATATC+TGG | + | chr1.3:59589185-59589204 | None:intergenic | 40.0% | |
| TCATCCTGCAAACAAAAGGA+GGG | + | chr1.3:59590836-59590855 | None:intergenic | 40.0% | |
| TCCTTATCATCCCAATCTTC+TGG | + | chr1.3:59589529-59589548 | None:intergenic | 40.0% | |
| TCTCCCACCAAAGAAAATCA+AGG | - | chr1.3:59589388-59589407 | MS.gene44181:CDS | 40.0% | |
| TGAGAAGAAGAAAGAAGAGG+AGG | - | chr1.3:59590491-59590510 | MS.gene44181:intron | 40.0% | |
| TGCCAACATACTTCAACTTG+GGG | + | chr1.3:59590162-59590181 | None:intergenic | 40.0% | |
| TGGGGAAAACATAGATGTCA+GGG | + | chr1.3:59590144-59590163 | None:intergenic | 40.0% | |
| TGTGTGTCCGGATTATAGAA+TGG | - | chr1.3:59588180-59588199 | MS.gene44181:intron | 40.0% | |
| TTCAGTGCTGTGGGTAAATT+TGG | + | chr1.3:59587512-59587531 | None:intergenic | 40.0% | |
| TTCCACTTTCCACTGTAGTT+GGG | + | chr1.3:59589990-59590009 | None:intergenic | 40.0% | |
| TTCCATTGCAATGGCGATTA+GGG | - | chr1.3:59587634-59587653 | MS.gene44181:CDS | 40.0% | |
| TTGACTCATCATCAGAGTCA+TGG | + | chr1.3:59590689-59590708 | None:intergenic | 40.0% | |
| TTGCTTACGTGGACAATATG+TGG | + | chr1.3:59587474-59587493 | None:intergenic | 40.0% | |
| TTGGGGAAAACATAGATGTC+AGG | + | chr1.3:59590145-59590164 | None:intergenic | 40.0% | |
| ! | AAACAAACCTTTGGCTTCCA+TGG | + | chr1.3:59589875-59589894 | None:intergenic | 40.0% |
| ! | AAGCCAAAGGTTTGTTTGTG+TGG | - | chr1.3:59589878-59589897 | MS.gene44181:intron | 40.0% |
| ! | AATGGTGACGCTAATGACAA+AGG | - | chr1.3:59588734-59588753 | MS.gene44181:CDS | 40.0% |
| ! | AGCAACTTGCTTAGCATACT+CGG | + | chr1.3:59590332-59590351 | None:intergenic | 40.0% |
| ! | CATTGTTTCTTTCAGTGCTG+TGG | + | chr1.3:59587522-59587541 | None:intergenic | 40.0% |
| ! | GGTCCTTGATTTTCTTTGGT+GGG | + | chr1.3:59589394-59589413 | None:intergenic | 40.0% |
| ! | TCCATTCAGATTTTACCCAC+CGG | + | chr1.3:59588664-59588683 | None:intergenic | 40.0% |
| ! | TCTGGGTCCTTGATTTTCTT+TGG | + | chr1.3:59589398-59589417 | None:intergenic | 40.0% |
| ! | TGACTCTGATGATGAGTCAA+AGG | - | chr1.3:59590689-59590708 | MS.gene44181:intron | 40.0% |
| ! | TGCAAAGTTAAGTAGCTTGC+TGG | + | chr1.3:59590262-59590281 | None:intergenic | 40.0% |
| ! | TTCCCCAAGTTGAAGTATGT+TGG | - | chr1.3:59590157-59590176 | MS.gene44181:intron | 40.0% |
| !! | CAACTAACCTTTTTGGCATC+AGG | + | chr1.3:59589710-59589729 | None:intergenic | 40.0% |
| !! | TTCACTGGTTTGAATACCTG+TGG | + | chr1.3:59588863-59588882 | None:intergenic | 40.0% |
| !!! | AGGTGAAAAGGGTACCTTTT+TGG | + | chr1.3:59589423-59589442 | None:intergenic | 40.0% |
| !!! | CACTCAATCTTTTGGCCTTA+AGG | - | chr1.3:59590396-59590415 | MS.gene44181:intron | 40.0% |
| AACCCTAATCGCCATTGCAA+TGG | + | chr1.3:59587639-59587658 | None:intergenic | 45.0% | |
| AAGAAGGATGAGAACTTGGC+CGG | - | chr1.3:59588683-59588702 | MS.gene44181:intron | 45.0% | |
| AGAAACATGGGGCAAGCAAA+AGG | - | chr1.3:59590354-59590373 | MS.gene44181:intron | 45.0% | |
| AGAACGAGAGAGAGAAGGTT+AGG | + | chr1.3:59587668-59587687 | None:intergenic | 45.0% | |
| ATCAAGAACCCCAACTACAG+TGG | - | chr1.3:59589978-59589997 | MS.gene44181:intron | 45.0% | |
| ATGATGAGGAAGATGGTGAG+TGG | - | chr1.3:59589813-59589832 | MS.gene44181:intron | 45.0% | |
| ATTGCCAACCCAGAGTACAA+GGG | - | chr1.3:59589848-59589867 | MS.gene44181:intron | 45.0% | |
| CAACTACAGTGGAAAGTGGA+AGG | - | chr1.3:59589989-59590008 | MS.gene44181:intron | 45.0% | |
| CATCCTGCAAACAAAAGGAG+GGG | + | chr1.3:59590835-59590854 | None:intergenic | 45.0% | |
| CTAAAGATGGATGGGAAAGC+CGG | - | chr1.3:59588642-59588661 | MS.gene44181:intron | 45.0% | |
| CTCATCCTGCAAACAAAAGG+AGG | + | chr1.3:59590837-59590856 | None:intergenic | 45.0% | |
| CTCTTCCGCATCAGAATCAA+CGG | + | chr1.3:59590640-59590659 | None:intergenic | 45.0% | |
| CTGGTAGTCTTTACTCTGAC+TGG | - | chr1.3:59589360-59589379 | MS.gene44181:CDS | 45.0% | |
| CTTAGCATACTCGGGATCAT+CGG | + | chr1.3:59590323-59590342 | None:intergenic | 45.0% | |
| CTTCCACTTTCCACTGTAGT+TGG | + | chr1.3:59589991-59590010 | None:intergenic | 45.0% | |
| GAACAGAAACTTGACTGTGG+TGG | - | chr1.3:59588970-59588989 | MS.gene44181:CDS | 45.0% | |
| GAACGAGAGAGAGAAGGTTA+GGG | + | chr1.3:59587667-59587686 | None:intergenic | 45.0% | |
| GAGATGAATGGACACAGCAA+TGG | + | chr1.3:59589737-59589756 | None:intergenic | 45.0% | |
| GAGCTCATCCTGCAAACAAA+AGG | + | chr1.3:59590840-59590859 | None:intergenic | 45.0% | |
| GCCAGAAGATTGGGATGATA+AGG | - | chr1.3:59589525-59589544 | MS.gene44181:intron | 45.0% | |
| GGACAATATGTGGCAGATTG+TGG | + | chr1.3:59587464-59587483 | None:intergenic | 45.0% | |
| GTTCCCTGAATTCAGCAACA+AGG | - | chr1.3:59588912-59588931 | MS.gene44181:CDS | 45.0% | |
| GTTCTTCCATAGAGTCTCAC+AGG | + | chr1.3:59588345-59588364 | None:intergenic | 45.0% | |
| TAAGCACCTGTGAGACTCTA+TGG | - | chr1.3:59588336-59588355 | MS.gene44181:intron | 45.0% | |
| TACACCTCTGGTCAATGGAA+TGG | - | chr1.3:59588716-59588735 | MS.gene44181:CDS | 45.0% | |
| TATGTTCTTGCAGGCTGAGA+AGG | - | chr1.3:59590452-59590471 | MS.gene44181:intron | 45.0% | |
| TCAGGATCAGCAACCTCTTT+AGG | + | chr1.3:59589692-59589711 | None:intergenic | 45.0% | |
| TCCACTTTCCACTGTAGTTG+GGG | + | chr1.3:59589989-59590008 | None:intergenic | 45.0% | |
| TCTTCCGCATCAGAATCAAC+GGG | + | chr1.3:59590639-59590658 | None:intergenic | 45.0% | |
| TGCTGATCCTGATGCCAAAA+AGG | - | chr1.3:59589700-59589719 | MS.gene44181:intron | 45.0% | |
| TTGCAATGGCGATTAGGGTT+CGG | - | chr1.3:59587639-59587658 | MS.gene44181:CDS | 45.0% | |
| ! | GCAACTTGCTTAGCATACTC+GGG | + | chr1.3:59590331-59590350 | None:intergenic | 45.0% |
| ! | GGGTCCTTGATTTTCTTTGG+TGG | + | chr1.3:59589395-59589414 | None:intergenic | 45.0% |
| ! | TGTTGGCATTGAATTGTGGC+AGG | - | chr1.3:59590174-59590193 | MS.gene44181:intron | 45.0% |
| ! | TTACGTGGATGTTGCTTACG+TGG | + | chr1.3:59587485-59587504 | None:intergenic | 45.0% |
| !! | TGATCCCGTTGATTCTGATG+CGG | - | chr1.3:59590632-59590651 | MS.gene44181:CDS | 45.0% |
| !! | TTTCCCCTCCTTTTGTTTGC+AGG | - | chr1.3:59590829-59590848 | MS.gene44181:CDS | 45.0% |
| ACCCCAACTACAGTGGAAAG+TGG | - | chr1.3:59589985-59590004 | MS.gene44181:intron | 50.0% | |
| AGAAGGATGAGAACTTGGCC+GGG | - | chr1.3:59588684-59588703 | MS.gene44181:intron | 50.0% | |
| AGCGAGCGATTCCATTGCAA+TGG | - | chr1.3:59587625-59587644 | MS.gene44181:CDS | 50.0% | |
| ATGTGGCAGATTGTGGCCAT+TGG | + | chr1.3:59587457-59587476 | None:intergenic | 50.0% | |
| CAGAAACTTGACTGTGGTGG+TGG | - | chr1.3:59588973-59588992 | MS.gene44181:CDS | 50.0% | |
| CATTGCCAACCCAGAGTACA+AGG | - | chr1.3:59589847-59589866 | MS.gene44181:intron | 50.0% | |
| CGCAGAAGCGATGGATAGAA+GGG | + | chr1.3:59587696-59587715 | None:intergenic | 50.0% | |
| GAAAACCTTCGCAGAAGCGA+TGG | + | chr1.3:59587705-59587724 | None:intergenic | 50.0% | |
| GACTGGGATGATGAGGAAGA+TGG | - | chr1.3:59589806-59589825 | MS.gene44181:intron | 50.0% | |
| GATGAGTCAAAGGCAGAAGC+TGG | - | chr1.3:59590699-59590718 | MS.gene44181:intron | 50.0% | |
| GCCGGTGGGTAAAATCTGAA+TGG | - | chr1.3:59588660-59588679 | MS.gene44181:intron | 50.0% | |
| GGAACTACACCTCTGGTCAA+TGG | - | chr1.3:59588711-59588730 | MS.gene44181:CDS | 50.0% | |
| GTAAGCTGGTCAGTCTCACA+AGG | + | chr1.3:59589269-59589288 | None:intergenic | 50.0% | |
| GTCACCATTCCATTGACCAG+AGG | + | chr1.3:59588723-59588742 | None:intergenic | 50.0% | |
| TCCATGGTCCCTTGTACTCT+GGG | + | chr1.3:59589859-59589878 | None:intergenic | 50.0% | |
| TCGCAGAAGCGATGGATAGA+AGG | + | chr1.3:59587697-59587716 | None:intergenic | 50.0% | |
| TCTATCCATCGCTTCTGCGA+AGG | - | chr1.3:59587697-59587716 | MS.gene44181:intron | 50.0% | |
| TGCTGTAGGTTGCATCAGGA+CGG | + | chr1.3:59589313-59589332 | None:intergenic | 50.0% | |
| TGTGGCAGATTGTGGCCATT+GGG | + | chr1.3:59587456-59587475 | None:intergenic | 50.0% | |
| TGTTGTGTAGCCTGAGGACT+GGG | - | chr1.3:59589790-59589809 | MS.gene44181:intron | 50.0% | |
| TTCAGGGAACTCAGCAGAGA+TGG | + | chr1.3:59588902-59588921 | None:intergenic | 50.0% | |
| TTCCATGGTCCCTTGTACTC+TGG | + | chr1.3:59589860-59589879 | None:intergenic | 50.0% | |
| TTCTGATGCGGAAGAGGATG+AGG | - | chr1.3:59590644-59590663 | MS.gene44181:intron | 50.0% | |
| TTGTTGTGTAGCCTGAGGAC+TGG | - | chr1.3:59589789-59589808 | MS.gene44181:intron | 50.0% | |
| ! | ACCTCTGGCTTCTTGTCTTC+AGG | + | chr1.3:59589565-59589584 | None:intergenic | 50.0% |
| ! | CCTCTGGCTTCTTGTCTTCA+GGG | + | chr1.3:59589564-59589583 | None:intergenic | 50.0% |
| ! | GCACCATTGATTGACAACCC+AGG | - | chr1.3:59590011-59590030 | MS.gene44181:intron | 50.0% |
| !! | AGGGTACCTTTTTGGCCTCT+GGG | + | chr1.3:59589415-59589434 | None:intergenic | 50.0% |
| !! | CGTTGATTCTGATGCGGAAG+AGG | - | chr1.3:59590638-59590657 | MS.gene44181:CDS | 50.0% |
| !! | CTTGTACTCTGGGTTGGCAA+TGG | + | chr1.3:59589849-59589868 | None:intergenic | 50.0% |
| !! | GTAGCTTGCTGGTCAGAGTT+TGG | + | chr1.3:59590251-59590270 | None:intergenic | 50.0% |
| !! | TACTCTGGGTTGGCAATGGT+AGG | + | chr1.3:59589845-59589864 | None:intergenic | 50.0% |
| !! | TTCTTCGAAGAGCGCTTCGA+AGG | - | chr1.3:59587722-59587741 | MS.gene44181:intron | 50.0% |
| !!! | AAGGGTACCTTTTTGGCCTC+TGG | + | chr1.3:59589416-59589435 | None:intergenic | 50.0% |
| AAGATGGATGGGAAAGCCGG+TGG | - | chr1.3:59588645-59588664 | MS.gene44181:intron | 55.0% | |
| ACCCAGAGTACAAGGGACCA+TGG | - | chr1.3:59589855-59589874 | MS.gene44181:intron | 55.0% | |
| AGATGGATGGGAAAGCCGGT+GGG | - | chr1.3:59588646-59588665 | MS.gene44181:intron | 55.0% | |
| ATTGGGTGAGTGCCACGTAG+GGG | + | chr1.3:59587439-59587458 | None:intergenic | 55.0% | |
| CAAGGACCCAGAGGCCAAAA+AGG | - | chr1.3:59589406-59589425 | MS.gene44181:intron | 55.0% | |
| CAAGGGACCATGGAAGCCAA+AGG | - | chr1.3:59589865-59589884 | MS.gene44181:intron | 55.0% | |
| CATTGGGTGAGTGCCACGTA+GGG | + | chr1.3:59587440-59587459 | None:intergenic | 55.0% | |
| CCCTGAAGACAAGAAGCCAG+AGG | - | chr1.3:59589561-59589580 | MS.gene44181:CDS | 55.0% | |
| GAAGGATGAGAACTTGGCCG+GGG | - | chr1.3:59588685-59588704 | MS.gene44181:intron | 55.0% | |
| GGCTTCTTGTCTTCAGGGTC+AGG | + | chr1.3:59589559-59589578 | None:intergenic | 55.0% | |
| TCAGGGTCGTCCTTGAAGTC+TGG | + | chr1.3:59590127-59590146 | None:intergenic | 55.0% | |
| TCCTCATCATCCCAGTCCTC+AGG | + | chr1.3:59589803-59589822 | None:intergenic | 55.0% | |
| TGGTCCCTTGTACTCTGGGT+TGG | + | chr1.3:59589855-59589874 | None:intergenic | 55.0% | |
| TTGGCGGTGATACTCCCTAC+AGG | - | chr1.3:59589037-59589056 | MS.gene44181:CDS | 55.0% | |
| ! | AGAGGTGTAGTTCCACTCCC+CGG | + | chr1.3:59588705-59588724 | None:intergenic | 55.0% |
| ATGAGAACTTGGCCGGGGAG+TGG | - | chr1.3:59588690-59588709 | MS.gene44181:intron | 60.0% | |
| CCATTGGGTGAGTGCCACGT+AGG | + | chr1.3:59587441-59587460 | None:intergenic | 60.0% | |
| CCTACGTGGCACTCACCCAA+TGG | - | chr1.3:59587438-59587457 | MS.gene44181:intron | 60.0% | |
| GCCTGAGGACTGGGATGATG+AGG | - | chr1.3:59589799-59589818 | MS.gene44181:intron | 60.0% | |
| GGGGAGTGGAACTACACCTC+TGG | - | chr1.3:59588704-59588723 | MS.gene44181:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59587425 | 59590862 | 59587425 | ID=MS.gene44181 |
| chr1.3 | mRNA | 59587425 | 59590862 | 59587425 | ID=MS.gene44181.t1;Parent=MS.gene44181 |
| chr1.3 | exon | 59590802 | 59590862 | 59590802 | ID=MS.gene44181.t1.exon1;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59590802 | 59590862 | 59590802 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59590544 | 59590660 | 59590544 | ID=MS.gene44181.t1.exon2;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59590544 | 59590660 | 59590544 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59589532 | 59589639 | 59589532 | ID=MS.gene44181.t1.exon3;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59589532 | 59589639 | 59589532 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59589229 | 59589421 | 59589229 | ID=MS.gene44181.t1.exon4;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59589229 | 59589421 | 59589229 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588860 | 59589118 | 59588860 | ID=MS.gene44181.t1.exon5;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588860 | 59589118 | 59588860 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588705 | 59588761 | 59588705 | ID=MS.gene44181.t1.exon6;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588705 | 59588761 | 59588705 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588566 | 59588613 | 59588566 | ID=MS.gene44181.t1.exon7;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588566 | 59588613 | 59588566 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588401 | 59588487 | 59588401 | ID=MS.gene44181.t1.exon8;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588401 | 59588487 | 59588401 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588255 | 59588312 | 59588255 | ID=MS.gene44181.t1.exon9;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588255 | 59588312 | 59588255 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59588092 | 59588159 | 59588092 | ID=MS.gene44181.t1.exon10;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59588092 | 59588159 | 59588092 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59587909 | 59588004 | 59587909 | ID=MS.gene44181.t1.exon11;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59587909 | 59588004 | 59587909 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59587775 | 59587822 | 59587775 | ID=MS.gene44181.t1.exon12;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59587775 | 59587822 | 59587775 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59587526 | 59587666 | 59587526 | ID=MS.gene44181.t1.exon13;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59587526 | 59587666 | 59587526 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| chr1.3 | exon | 59587425 | 59587436 | 59587425 | ID=MS.gene44181.t1.exon14;Parent=MS.gene44181.t1 |
| chr1.3 | CDS | 59587425 | 59587436 | 59587425 | ID=cds.MS.gene44181.t1;Parent=MS.gene44181.t1 |
| Gene Sequence |
| Protein sequence |
