Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009621.t1 | AES99055.1 | 99 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 5.80E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009621.t1 | Q9LEV3 | 81.6 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 1.1e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009621.t1 | G7K5X3 | 99.0 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 4.1e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065401 | MS.gene009621 | PPI |
| MS.gene009621 | MS.gene029745 | PPI |
| MS.gene065402 | MS.gene009621 | PPI |
| MS.gene009621 | MS.gene051416 | PPI |
| MS.gene47429 | MS.gene009621 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009621.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 1.28e-151 | 421 |
| MS.gene009621.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 5.96e-151 | 417 |
| MS.gene009621.t1 | MTR_5g076010 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 2.17e-70 | 224 |
| MS.gene009621.t1 | MTR_3g111940 | 48.792 | 207 | 101 | 4 | 1 | 205 | 1 | 204 | 6.16e-59 | 184 |
| MS.gene009621.t1 | MTR_6g037360 | 84.375 | 96 | 15 | 0 | 1 | 96 | 1 | 96 | 8.86e-55 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009621.t1 | AT5G10860 | 81.553 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 1.46e-124 | 350 |
| MS.gene009621.t1 | AT1G47271 | 47.594 | 187 | 96 | 2 | 19 | 205 | 8 | 192 | 1.35e-56 | 177 |
Find 64 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGTAGAACTTTGGTATC+AGG | 0.268586 | 5.3:+61038420 | None:intergenic |
| GCGCTGATGGTTCCTGGCTT+TGG | 0.334908 | 5.3:-61039374 | MS.gene009621:CDS |
| ATCCCCAACCTTGGTGGACT+TGG | 0.351301 | 5.3:+61038779 | None:intergenic |
| GTAAAGGCGCTGATGGTTCC+TGG | 0.372640 | 5.3:-61039380 | MS.gene009621:CDS |
| AAAAGGCAACTGGCTGCAAC+AGG | 0.388839 | 5.3:+61039487 | None:intergenic |
| GCAATTGATTTCTCCTCCCC+TGG | 0.398515 | 5.3:+61039182 | None:intergenic |
| CATCCAAGTCCACCAAGGTT+GGG | 0.411069 | 5.3:-61038782 | MS.gene009621:CDS |
| CGCTTGAATGCTTACATACA+AGG | 0.428996 | 5.3:-61037903 | MS.gene009621:CDS |
| TCAGACATCTTGCAAGGAAA+AGG | 0.429987 | 5.3:-61039402 | MS.gene009621:CDS |
| GGGGAGGAGAAATCAATTGC+TGG | 0.452072 | 5.3:-61039179 | MS.gene009621:CDS |
| ATTTCCTTGTCATTTATGAC+AGG | 0.461486 | 5.3:+61037993 | None:intergenic |
| ACAAAACAATGTTGGTGCTT+TGG | 0.467003 | 5.3:-61039216 | MS.gene009621:CDS |
| CTGCATTGCTCGTAGAACTT+TGG | 0.470356 | 5.3:+61038413 | None:intergenic |
| TCAAACCGTGAAAAGGCAAC+TGG | 0.475093 | 5.3:+61039477 | None:intergenic |
| TGTTTATGATGCTGTCAAAT+CGG | 0.475200 | 5.3:-61039334 | MS.gene009621:intron |
| CTCGTAGAACTTTGGTATCA+GGG | 0.479170 | 5.3:+61038421 | None:intergenic |
| GCTTTGGTGGTCGTGAAACC+AGG | 0.480001 | 5.3:-61039200 | MS.gene009621:CDS |
| CGAGCAATGCAGCTGATGAC+TGG | 0.482450 | 5.3:-61038402 | MS.gene009621:intron |
| CATAATATCCCCAACCTTGG+TGG | 0.484654 | 5.3:+61038773 | None:intergenic |
| TCATCCAAGTCCACCAAGGT+TGG | 0.495164 | 5.3:-61038783 | MS.gene009621:CDS |
| TGCTACACCTGCTCGTATTG+AGG | 0.498372 | 5.3:-61039451 | MS.gene009621:CDS |
| ATCTGTGGTGCACCAAAGCC+AGG | 0.513664 | 5.3:+61039362 | None:intergenic |
| ATGCTCGGCATGGTGTCCAT+TGG | 0.515005 | 5.3:-61037972 | MS.gene009621:CDS |
| ATCCAAGTCCACCAAGGTTG+GGG | 0.516755 | 5.3:-61038781 | MS.gene009621:CDS |
| GCTGGAATTATAACAGAAAG+AGG | 0.519325 | 5.3:-61039161 | MS.gene009621:intron |
| AGCAGACTCAAACCGTGAAA+AGG | 0.527310 | 5.3:+61039470 | None:intergenic |
| AACAGTGGTTCATACCTCTT+CGG | 0.527383 | 5.3:+61038749 | None:intergenic |
| AAGGCAACTGGCTGCAACAG+GGG | 0.531751 | 5.3:+61039489 | None:intergenic |
| CCTGAGGAAGATCATCGTGC+AGG | 0.535472 | 5.3:-61038811 | MS.gene009621:CDS |
| CCTGCACGATGATCTTCCTC+AGG | 0.537692 | 5.3:+61038811 | None:intergenic |
| AAACAATGTTGGTGCTTTGG+TGG | 0.560729 | 5.3:-61039213 | MS.gene009621:CDS |
| ATCTTGCAAGGAAAAGGTAA+AGG | 0.561654 | 5.3:-61039396 | MS.gene009621:CDS |
| GGAAAAGGTAAAGGCGCTGA+TGG | 0.566636 | 5.3:-61039387 | MS.gene009621:CDS |
| TTGCAAGATGTCTGAAATTG+TGG | 0.570234 | 5.3:+61039410 | None:intergenic |
| CCATGCTCCTCAATACGAGC+AGG | 0.573052 | 5.3:+61039444 | None:intergenic |
| AGATGTTGTTCGTGCTGTCG+TGG | 0.574794 | 5.3:-61037949 | MS.gene009621:CDS |
| GATGTTGTTCGTGCTGTCGT+GGG | 0.578243 | 5.3:-61037948 | MS.gene009621:CDS |
| ACAATTTCAGACATCTTGCA+AGG | 0.588745 | 5.3:-61039408 | MS.gene009621:CDS |
| TTTCCTTGTCATTTATGACA+GGG | 0.591475 | 5.3:+61037994 | None:intergenic |
| ATAAATGACAAGGAAATGCT+CGG | 0.596746 | 5.3:-61037987 | MS.gene009621:CDS |
| CTTTGGTGGTCGTGAAACCA+GGG | 0.598133 | 5.3:-61039199 | MS.gene009621:CDS |
| AGCACGAACAACATCTCCAA+TGG | 0.603380 | 5.3:+61037956 | None:intergenic |
| CATCCCTGTCATAAATGACA+AGG | 0.612336 | 5.3:-61037997 | MS.gene009621:CDS |
| TATTAGACAGCCAAAATGCA+AGG | 0.612518 | 5.3:-61039585 | None:intergenic |
| CTTGTTATCTAGATTACCTG+AGG | 0.614478 | 5.3:-61038827 | MS.gene009621:intron |
| CTGAGGAAGATCATCGTGCA+GGG | 0.615519 | 5.3:-61038810 | MS.gene009621:CDS |
| GGTCATAATATCCCCAACCT+TGG | 0.616609 | 5.3:+61038770 | None:intergenic |
| CCTGCTCGTATTGAGGAGCA+TGG | 0.625826 | 5.3:-61039444 | MS.gene009621:CDS |
| ATCATAAACAGTGTCATCTG+TGG | 0.626836 | 5.3:+61039347 | None:intergenic |
| TGACAAGGAAATGCTCGGCA+TGG | 0.629220 | 5.3:-61037982 | MS.gene009621:CDS |
| CAGATGACACAAAACAATGT+TGG | 0.632418 | 5.3:-61039224 | MS.gene009621:CDS |
| GCTTGAATGCTTACATACAA+GGG | 0.636806 | 5.3:-61037902 | MS.gene009621:CDS |
| CTTGAATGCTTACATACAAG+GGG | 0.646063 | 5.3:-61037901 | MS.gene009621:CDS |
| TCGTAGAACTTTGGTATCAG+GGG | 0.648663 | 5.3:+61038422 | None:intergenic |
| CTTGTATGTAAGCATTCAAG+CGG | 0.650554 | 5.3:+61037904 | None:intergenic |
| AAAGGCAACTGGCTGCAACA+GGG | 0.653192 | 5.3:+61039488 | None:intergenic |
| TGGGGATATTATGACCGAAG+AGG | 0.678710 | 5.3:-61038763 | MS.gene009621:intron |
| GCAACAGGGGATTCACCATG+CGG | 0.686296 | 5.3:+61039502 | None:intergenic |
| GGTGGTCGTGAAACCAGGGG+AGG | 0.700076 | 5.3:-61039195 | MS.gene009621:CDS |
| TTTGGTGGTCGTGAAACCAG+GGG | 0.702988 | 5.3:-61039198 | MS.gene009621:CDS |
| TTGAATGCTTACATACAAGG+GGG | 0.704653 | 5.3:-61037900 | MS.gene009621:CDS |
| AAGATCATCCAAGTCCACCA+AGG | 0.706227 | 5.3:-61038787 | MS.gene009621:CDS |
| TAGACAGCCAAAATGCAAGG+AGG | 0.707266 | 5.3:-61039582 | None:intergenic |
| TGAATGCTTACATACAAGGG+GGG | 0.726022 | 5.3:-61037899 | MS.gene009621:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACAATATGATTTATAT+TGG | - | chr5.3:61038449-61038468 | MS.gene009621:intron | 15.0% |
| !! | AATAAGAAGAAAACAACTTA+TGG | - | chr5.3:61039309-61039328 | MS.gene009621:intron | 20.0% |
| !! | ACAAATAATATTTGCCAATT+TGG | + | chr5.3:61038849-61038868 | None:intergenic | 20.0% |
| !! | TTTATATTGGAGAAGAAAAA+CGG | - | chr5.3:61038462-61038481 | MS.gene009621:intron | 20.0% |
| ! | AATAGTCAAATAAGTAACAG+TGG | + | chr5.3:61038732-61038751 | None:intergenic | 25.0% |
| ! | ACAATGTTAGATATCATGAA+TGG | + | chr5.3:61038986-61039005 | None:intergenic | 25.0% |
| ! | ATGACAAATATAATTGGAAG+TGG | + | chr5.3:61038594-61038613 | None:intergenic | 25.0% |
| ! | ATTAAGTTATTCATCCAAAC+AGG | + | chr5.3:61039209-61039228 | None:intergenic | 25.0% |
| ! | ATTTGTATAGCACAAAATGT+AGG | + | chr5.3:61038784-61038803 | None:intergenic | 25.0% |
| ! | GCGTTAATGACAAATATAAT+TGG | + | chr5.3:61038600-61038619 | None:intergenic | 25.0% |
| ! | TCAAATAAACCAATCAAAAC+TGG | - | chr5.3:61039387-61039406 | MS.gene009621:CDS | 25.0% |
| ! | TGTTATCTGGAAGAAAAAAA+AGG | + | chr5.3:61039436-61039455 | None:intergenic | 25.0% |
| ! | TTAAGTTATTCATCCAAACA+GGG | + | chr5.3:61039208-61039227 | None:intergenic | 25.0% |
| !!! | AAATAAGAACCAGTTTTGAT+TGG | + | chr5.3:61039399-61039418 | None:intergenic | 25.0% |
| !!! | CTGGTATTGATATCTTTTTT+CGG | - | chr5.3:61039080-61039099 | MS.gene009621:intron | 25.0% |
| !!! | TTTTTTTTCTTCCAGATAAC+AGG | - | chr5.3:61039435-61039454 | MS.gene009621:CDS | 25.0% |
| ATAAATGACAAGGAAATGCT+CGG | - | chr5.3:61039476-61039495 | MS.gene009621:CDS | 30.0% | |
| ATAATATTTGCCAATTTGGC+AGG | + | chr5.3:61038845-61038864 | None:intergenic | 30.0% | |
| ATGTTAGATATCATGAATGG+TGG | + | chr5.3:61038983-61039002 | None:intergenic | 30.0% | |
| CATTATGACATGTCAGTTAA+TGG | + | chr5.3:61038504-61038523 | None:intergenic | 30.0% | |
| GAAATAACTGCATGAACATT+TGG | + | chr5.3:61038330-61038349 | None:intergenic | 30.0% | |
| TAATATTTGCCAATTTGGCA+GGG | + | chr5.3:61038844-61038863 | None:intergenic | 30.0% | |
| TATCTGGAAGAAAAAAAAGG+TGG | + | chr5.3:61039433-61039452 | None:intergenic | 30.0% | |
| TGGTTATCTTCACAAGATAT+TGG | - | chr5.3:61038384-61038403 | MS.gene009621:intron | 30.0% | |
| TGTTTATGATGCTGTCAAAT+CGG | - | chr5.3:61038129-61038148 | MS.gene009621:intron | 30.0% | |
| TTAACTGACATGTCATAATG+TGG | - | chr5.3:61038504-61038523 | MS.gene009621:intron | 30.0% | |
| TTGATATTGCCTATTAAGCA+GGG | - | chr5.3:61038903-61038922 | MS.gene009621:intron | 30.0% | |
| ! | ATTTCCTTGTCATTTATGAC+AGG | + | chr5.3:61039473-61039492 | None:intergenic | 30.0% |
| ! | GCATGCTTTTGTCAATATAT+TGG | - | chr5.3:61038539-61038558 | MS.gene009621:intron | 30.0% |
| ! | TTAATGGATCTCAGGTTATT+AGG | + | chr5.3:61038488-61038507 | None:intergenic | 30.0% |
| ! | TTTCCTTGTCATTTATGACA+GGG | + | chr5.3:61039472-61039491 | None:intergenic | 30.0% |
| ! | TTTTGTCAATATATTGGACG+CGG | - | chr5.3:61038545-61038564 | MS.gene009621:intron | 30.0% |
| !! | GTTCATGCAGTTATTTCTTT+GGG | - | chr5.3:61038333-61038352 | MS.gene009621:intron | 30.0% |
| !! | TGTTCATGCAGTTATTTCTT+TGG | - | chr5.3:61038332-61038351 | MS.gene009621:intron | 30.0% |
| !! | TTGCGATCATTTTTGTCAAA+CGG | - | chr5.3:61037905-61037924 | MS.gene009621:CDS | 30.0% |
| !! | TTGTTGTGTAATGGATAACT+TGG | - | chr5.3:61038364-61038383 | MS.gene009621:intron | 30.0% |
| !!! | GATATCTTTTTTCGGTCTTT+TGG | - | chr5.3:61039088-61039107 | MS.gene009621:intron | 30.0% |
| AATATTTGCCAATTTGGCAG+GGG | + | chr5.3:61038843-61038862 | None:intergenic | 35.0% | |
| AATCTATCCTGAAGAGCTTA+TGG | - | chr5.3:61039285-61039304 | MS.gene009621:intron | 35.0% | |
| ACAATTTCAGACATCTTGCA+AGG | - | chr5.3:61038055-61038074 | MS.gene009621:intron | 35.0% | |
| ATCATAAACAGTGTCATCTG+TGG | + | chr5.3:61038119-61038138 | None:intergenic | 35.0% | |
| ATCTTGCAAGGAAAAGGTAA+AGG | - | chr5.3:61038067-61038086 | MS.gene009621:intron | 35.0% | |
| CAGATGACACAAAACAATGT+TGG | - | chr5.3:61038239-61038258 | MS.gene009621:intron | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | + | chr5.3:61039295-61039314 | None:intergenic | 35.0% | |
| CTTGAATGCTTACATACAAG+GGG | - | chr5.3:61039562-61039581 | MS.gene009621:CDS | 35.0% | |
| CTTGTATGTAAGCATTCAAG+CGG | + | chr5.3:61039562-61039581 | None:intergenic | 35.0% | |
| GCTGGAATTATAACAGAAAG+AGG | - | chr5.3:61038302-61038321 | MS.gene009621:intron | 35.0% | |
| GCTTGAATGCTTACATACAA+GGG | - | chr5.3:61039561-61039580 | MS.gene009621:CDS | 35.0% | |
| GTTGATATTGCCTATTAAGC+AGG | - | chr5.3:61038902-61038921 | MS.gene009621:intron | 35.0% | |
| TATCTAACATTGTTATGCGC+TGG | - | chr5.3:61038993-61039012 | MS.gene009621:intron | 35.0% | |
| TTGAATGCTTACATACAAGG+GGG | - | chr5.3:61039563-61039582 | MS.gene009621:CDS | 35.0% | |
| ! | ACAAAACAATGTTGGTGCTT+TGG | - | chr5.3:61038247-61038266 | MS.gene009621:intron | 35.0% |
| ! | CTTGTTATCTAGATTACCTG+AGG | - | chr5.3:61038636-61038655 | MS.gene009621:intron | 35.0% |
| ! | TTGCAAGATGTCTGAAATTG+TGG | + | chr5.3:61038056-61038075 | None:intergenic | 35.0% |
| !! | GATATTGGCTTACATCAAAC+TGG | - | chr5.3:61038399-61038418 | MS.gene009621:intron | 35.0% |
| !! | GTCTGTAGTTTGTTGTGTAA+TGG | - | chr5.3:61038355-61038374 | MS.gene009621:intron | 35.0% |
| !! | TGCGATCATTTTTGTCAAAC+GGG | - | chr5.3:61037906-61037925 | MS.gene009621:CDS | 35.0% |
| AACAGTGGTTCATACCTCTT+CGG | + | chr5.3:61038717-61038736 | None:intergenic | 40.0% | |
| ACTGACATGTCATAATGTGG+TGG | - | chr5.3:61038507-61038526 | MS.gene009621:intron | 40.0% | |
| ATCCGTATTGCAAGTGCTTA+TGG | - | chr5.3:61039352-61039371 | MS.gene009621:CDS | 40.0% | |
| ATGTGTCTGATCCTGTTATC+TGG | + | chr5.3:61039449-61039468 | None:intergenic | 40.0% | |
| CATCCCTGTCATAAATGACA+AGG | - | chr5.3:61039466-61039485 | MS.gene009621:CDS | 40.0% | |
| CGCTTGAATGCTTACATACA+AGG | - | chr5.3:61039560-61039579 | MS.gene009621:CDS | 40.0% | |
| CTCGTAGAACTTTGGTATCA+GGG | + | chr5.3:61039045-61039064 | None:intergenic | 40.0% | |
| CTTGTAGCCTGTTTGACTAT+AGG | - | chr5.3:61039182-61039201 | MS.gene009621:CDS | 40.0% | |
| GCACACGACACATTCAAATT+TGG | + | chr5.3:61038425-61038444 | None:intergenic | 40.0% | |
| TCAGACATCTTGCAAGGAAA+AGG | - | chr5.3:61038061-61038080 | MS.gene009621:intron | 40.0% | |
| TCGTAGAACTTTGGTATCAG+GGG | + | chr5.3:61039044-61039063 | None:intergenic | 40.0% | |
| TGAATGCTTACATACAAGGG+GGG | - | chr5.3:61039564-61039583 | MS.gene009621:CDS | 40.0% | |
| TGCCATAAGCACTTGCAATA+CGG | + | chr5.3:61039357-61039376 | None:intergenic | 40.0% | |
| ! | AAACAATGTTGGTGCTTTGG+TGG | - | chr5.3:61038250-61038269 | MS.gene009621:intron | 40.0% |
| ! | CATGTCAGTTAATGGATCTC+AGG | + | chr5.3:61038496-61038515 | None:intergenic | 40.0% |
| AACAGGGCCTATAGTCAAAC+AGG | + | chr5.3:61039192-61039211 | None:intergenic | 45.0% | |
| AAGATCATCCAAGTCCACCA+AGG | - | chr5.3:61038676-61038695 | MS.gene009621:intron | 45.0% | |
| ACCAGTAGTTAGGGCAACAT+AGG | - | chr5.3:61038927-61038946 | MS.gene009621:intron | 45.0% | |
| AGCACGAACAACATCTCCAA+TGG | + | chr5.3:61039510-61039529 | None:intergenic | 45.0% | |
| AGCAGACTCAAACCGTGAAA+AGG | + | chr5.3:61037996-61038015 | None:intergenic | 45.0% | |
| CATAATATCCCCAACCTTGG+TGG | + | chr5.3:61038693-61038712 | None:intergenic | 45.0% | |
| CTACTGGTACCCTGCTTAAT+AGG | + | chr5.3:61038915-61038934 | None:intergenic | 45.0% | |
| CTGCATTGCTCGTAGAACTT+TGG | + | chr5.3:61039053-61039072 | None:intergenic | 45.0% | |
| CTGTATGCAAAGTTCAGCAG+TGG | - | chr5.3:61038880-61038899 | MS.gene009621:intron | 45.0% | |
| GACATGTCATAATGTGGTGG+AGG | - | chr5.3:61038510-61038529 | MS.gene009621:intron | 45.0% | |
| GCTCGTAGAACTTTGGTATC+AGG | + | chr5.3:61039046-61039065 | None:intergenic | 45.0% | |
| GGTCATAATATCCCCAACCT+TGG | + | chr5.3:61038696-61038715 | None:intergenic | 45.0% | |
| GTTTGACTATAGGCCCTGTT+TGG | - | chr5.3:61039192-61039211 | MS.gene009621:CDS | 45.0% | |
| TCAAACCGTGAAAAGGCAAC+TGG | + | chr5.3:61037989-61038008 | None:intergenic | 45.0% | |
| TCCTATGTTGCCCTAACTAC+TGG | + | chr5.3:61038931-61038950 | None:intergenic | 45.0% | |
| TGGGGATATTATGACCGAAG+AGG | - | chr5.3:61038700-61038719 | MS.gene009621:intron | 45.0% | |
| ! | AAGCAGGGTACCAGTAGTTA+GGG | - | chr5.3:61038918-61038937 | MS.gene009621:intron | 45.0% |
| ! | TAAGCAGGGTACCAGTAGTT+AGG | - | chr5.3:61038917-61038936 | MS.gene009621:intron | 45.0% |
| AAAAGGCAACTGGCTGCAAC+AGG | + | chr5.3:61037979-61037998 | None:intergenic | 50.0% | |
| AAAGGCAACTGGCTGCAACA+GGG | + | chr5.3:61037978-61037997 | None:intergenic | 50.0% | |
| AGATGTTGTTCGTGCTGTCG+TGG | - | chr5.3:61039514-61039533 | MS.gene009621:CDS | 50.0% | |
| ATCCAAGTCCACCAAGGTTG+GGG | - | chr5.3:61038682-61038701 | MS.gene009621:intron | 50.0% | |
| CATCCAAGTCCACCAAGGTT+GGG | - | chr5.3:61038681-61038700 | MS.gene009621:intron | 50.0% | |
| CTGAGGAAGATCATCGTGCA+GGG | - | chr5.3:61038653-61038672 | MS.gene009621:intron | 50.0% | |
| GATGTTGTTCGTGCTGTCGT+GGG | - | chr5.3:61039515-61039534 | MS.gene009621:CDS | 50.0% | |
| GGGGAGGAGAAATCAATTGC+TGG | - | chr5.3:61038284-61038303 | MS.gene009621:intron | 50.0% | |
| TCATCCAAGTCCACCAAGGT+TGG | - | chr5.3:61038680-61038699 | MS.gene009621:intron | 50.0% | |
| TGACAAGGAAATGCTCGGCA+TGG | - | chr5.3:61039481-61039500 | MS.gene009621:CDS | 50.0% | |
| TGCTACACCTGCTCGTATTG+AGG | - | chr5.3:61038012-61038031 | MS.gene009621:CDS | 50.0% | |
| ! | CTTTGGTGGTCGTGAAACCA+GGG | - | chr5.3:61038264-61038283 | MS.gene009621:intron | 50.0% |
| ! | GCAATTGATTTCTCCTCCCC+TGG | + | chr5.3:61038284-61038303 | None:intergenic | 50.0% |
| ! | TGCAGCCAGTTGCCTTTTCA+CGG | - | chr5.3:61037981-61038000 | MS.gene009621:CDS | 50.0% |
| ! | TGTTTTGCAACGAGTCCGCA+TGG | - | chr5.3:61037946-61037965 | MS.gene009621:CDS | 50.0% |
| ! | TTTGGTGGTCGTGAAACCAG+GGG | - | chr5.3:61038265-61038284 | MS.gene009621:intron | 50.0% |
| !! | GGAAAAGGTAAAGGCGCTGA+TGG | - | chr5.3:61038076-61038095 | MS.gene009621:intron | 50.0% |
| AAGGCAACTGGCTGCAACAG+GGG | + | chr5.3:61037977-61037996 | None:intergenic | 55.0% | |
| ATCTGTGGTGCACCAAAGCC+AGG | + | chr5.3:61038104-61038123 | None:intergenic | 55.0% | |
| ATGCTCGGCATGGTGTCCAT+TGG | - | chr5.3:61039491-61039510 | MS.gene009621:CDS | 55.0% | |
| CCATGCTCCTCAATACGAGC+AGG | + | chr5.3:61038022-61038041 | None:intergenic | 55.0% | |
| CCTGAGGAAGATCATCGTGC+AGG | - | chr5.3:61038652-61038671 | MS.gene009621:intron | 55.0% | |
| CCTGCACGATGATCTTCCTC+AGG | + | chr5.3:61038655-61038674 | None:intergenic | 55.0% | |
| CCTGCTCGTATTGAGGAGCA+TGG | - | chr5.3:61038019-61038038 | MS.gene009621:intron | 55.0% | |
| CGAGCAATGCAGCTGATGAC+TGG | - | chr5.3:61039061-61039080 | MS.gene009621:intron | 55.0% | |
| GCAACAGGGGATTCACCATG+CGG | + | chr5.3:61037964-61037983 | None:intergenic | 55.0% | |
| ! | GCTTTGGTGGTCGTGAAACC+AGG | - | chr5.3:61038263-61038282 | MS.gene009621:intron | 55.0% |
| !! | ATCCCCAACCTTGGTGGACT+TGG | + | chr5.3:61038687-61038706 | None:intergenic | 55.0% |
| !! | GTAAAGGCGCTGATGGTTCC+TGG | - | chr5.3:61038083-61038102 | MS.gene009621:intron | 55.0% |
| CAGCGATGCCCCTGCCAAAT+TGG | - | chr5.3:61038832-61038851 | MS.gene009621:intron | 60.0% | |
| ! | GCGCTGATGGTTCCTGGCTT+TGG | - | chr5.3:61038089-61038108 | MS.gene009621:intron | 60.0% |
| GGTGGTCGTGAAACCAGGGG+AGG | - | chr5.3:61038268-61038287 | MS.gene009621:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 61037893 | 61039592 | 61037893 | ID=MS.gene009621 |
| chr5.3 | mRNA | 61037893 | 61039592 | 61037893 | ID=MS.gene009621.t1;Parent=MS.gene009621 |
| chr5.3 | exon | 61039335 | 61039592 | 61039335 | ID=MS.gene009621.t1.exon1;Parent=MS.gene009621.t1 |
| chr5.3 | CDS | 61039335 | 61039592 | 61039335 | ID=cds.MS.gene009621.t1;Parent=MS.gene009621.t1 |
| chr5.3 | exon | 61039162 | 61039243 | 61039162 | ID=MS.gene009621.t1.exon2;Parent=MS.gene009621.t1 |
| chr5.3 | CDS | 61039162 | 61039243 | 61039162 | ID=cds.MS.gene009621.t1;Parent=MS.gene009621.t1 |
| chr5.3 | exon | 61038764 | 61038837 | 61038764 | ID=MS.gene009621.t1.exon3;Parent=MS.gene009621.t1 |
| chr5.3 | CDS | 61038764 | 61038837 | 61038764 | ID=cds.MS.gene009621.t1;Parent=MS.gene009621.t1 |
| chr5.3 | exon | 61038403 | 61038463 | 61038403 | ID=MS.gene009621.t1.exon4;Parent=MS.gene009621.t1 |
| chr5.3 | CDS | 61038403 | 61038463 | 61038403 | ID=cds.MS.gene009621.t1;Parent=MS.gene009621.t1 |
| chr5.3 | exon | 61037893 | 61038035 | 61037893 | ID=MS.gene009621.t1.exon5;Parent=MS.gene009621.t1 |
| chr5.3 | CDS | 61037893 | 61038035 | 61037893 | ID=cds.MS.gene009621.t1;Parent=MS.gene009621.t1 |
| Gene Sequence |
| Protein sequence |
