AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47429.t1 MTR_1g062770 91.626 203 7 1 1 193 1 203 3.53e-132 369
MS.gene47429.t1 MTR_2g048680 35.000 120 71 2 54 173 94 206 3.23e-12 63.2
MS.gene47429.t1 MTR_2g048680 34.167 120 72 1 54 173 174 286 5.97e-12 63.5
MS.gene47429.t1 MTR_8g056020 37.624 101 56 1 61 161 262 355 1.04e-11 62.8
MS.gene47429.t1 MTR_4g113530 27.607 163 91 3 55 190 545 707 4.76e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47429.t1 AT3G09890 58.794 199 70 3 1 187 1 199 1.84e-74 223
MS.gene47429.t1 AT3G09890 56.757 148 52 3 1 136 1 148 4.12e-48 154
MS.gene47429.t1 AT5G40160 36.434 129 72 4 48 173 169 290 6.82e-13 66.2
MS.gene47429.t1 AT5G40160 36.975 119 65 4 48 163 169 280 3.82e-12 63.9
MS.gene47429.t1 AT4G19150 32.432 111 68 1 63 173 52 155 7.01e-12 62.8
MS.gene47429.t1 AT2G17390 33.333 111 67 1 63 173 222 325 1.37e-11 62.8
MS.gene47429.t1 AT4G19150 32.110 109 67 1 65 173 31 132 2.57e-11 60.8

Find 53 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTTGACCTGTTTATA+TGG 0.261973 1.4:-51629789 MS.gene47429:CDS
TTCAAACCATTGCGTCTTCC+TGG 0.282234 1.4:+51630845 None:intergenic
TCCACAAAGCAAAACTTATA+TGG 0.299371 1.4:-51628787 MS.gene47429:CDS
CTTGCATCTGTGCCAGGTTC+AGG 0.300371 1.4:+51628674 None:intergenic
ACAATGCTGAGCATATAAAA+AGG 0.344847 1.4:-51629452 MS.gene47429:CDS
ATCACATCAATGGCGGTTCC+AGG 0.366086 1.4:-51630863 None:intergenic
ATTAGATTGTTGCTGTCTAA+TGG 0.400508 1.4:-51628817 MS.gene47429:CDS
CCAGGTTCAGGTAACTCTGC+AGG 0.402815 1.4:+51628686 None:intergenic
TTCAAAATGACCATATAAAC+AGG 0.410609 1.4:+51629779 None:intergenic
AGCCTCCTTGCATCTGTGCC+AGG 0.449249 1.4:+51628668 None:intergenic
GTCACCGTGTGTTGCGGCAT+GGG 0.457918 1.4:+51630730 None:intergenic
ATAATTGCAGATAACTTGAA+TGG 0.476428 1.4:-51629849 MS.gene47429:intron
CCTTTACACGATGCTTGTGC+AGG 0.483914 1.4:-51629607 MS.gene47429:CDS
ACTAGAAAGAGGAGCCAACT+TGG 0.490839 1.4:-51629656 MS.gene47429:CDS
TAGCTCTGTTAAGTAGAAGC+TGG 0.495329 1.4:+51629475 None:intergenic
TTGATGAACCAGTGGAGGAT+GGG 0.509929 1.4:-51629821 MS.gene47429:CDS
CGTGTGTTGCGGCATGGGAG+AGG 0.523848 1.4:+51630735 None:intergenic
TTGGAGGCTACAGATGAAGA+TGG 0.525829 1.4:-51629637 MS.gene47429:CDS
TGGAGGCTACAGATGAAGAT+GGG 0.526662 1.4:-51629636 MS.gene47429:CDS
CAGGTTCAGGTAACTCTGCA+GGG 0.527694 1.4:+51628687 None:intergenic
CTCTCCCATGCCGCAACACA+CGG 0.528668 1.4:-51630734 MS.gene47429:intron
CCTCTTGCAGCATGATGAAG+AGG 0.537041 1.4:+51628856 None:intergenic
CCTGCAGAGTTACCTGAACC+TGG 0.542445 1.4:-51628686 MS.gene47429:CDS
TGATGAACCAGTGGAGGATG+GGG 0.542652 1.4:-51629820 MS.gene47429:CDS
GCTAGAATCCGTTGATTCTG+AGG 0.542950 1.4:-51629427 MS.gene47429:CDS
ATTGATGAACCAGTGGAGGA+TGG 0.543937 1.4:-51629822 MS.gene47429:CDS
CCTGCACAAGCATCGTGTAA+AGG 0.546613 1.4:+51629607 None:intergenic
AATGCTATATTAGATTTCCA+TGG 0.546731 1.4:+51628625 None:intergenic
TTCATCTGTAGCCTCCAAGT+TGG 0.553926 1.4:+51629642 None:intergenic
AATGGTCTCTTCGTAGAAGA+AGG 0.554397 1.4:-51630800 MS.gene47429:CDS
GCAGTATCCCCATCCTCCAC+TGG 0.555228 1.4:+51629813 None:intergenic
CTCTTCATCATGCTGCAAGA+GGG 0.557025 1.4:-51628855 MS.gene47429:CDS
GGTCACCGTGTGTTGCGGCA+TGG 0.558536 1.4:+51630729 None:intergenic
TTGCAGATGCTACTAGAAAG+AGG 0.564043 1.4:-51629667 MS.gene47429:intron
CCTCTTCATCATGCTGCAAG+AGG 0.568776 1.4:-51628856 MS.gene47429:CDS
TTACACGATGCTTGTGCAGG+AGG 0.583004 1.4:-51629604 MS.gene47429:intron
GTTGAGGTCACCGTGTGTTG+CGG 0.587853 1.4:+51630724 None:intergenic
AAAGCAAAACTTATATGGAA+AGG 0.588451 1.4:-51628782 MS.gene47429:intron
TCTTCATCATGCTGCAAGAG+GGG 0.593759 1.4:-51628854 MS.gene47429:CDS
TGATGCTGCTGCTACTGCCA+TGG 0.597475 1.4:-51628642 MS.gene47429:CDS
TGGGAGAGGTCACGAAGATG+AGG 0.605218 1.4:+51630749 None:intergenic
AGGTTCAGGTAACTCTGCAG+GGG 0.613740 1.4:+51628688 None:intergenic
CTGAACCTGGCACAGATGCA+AGG 0.614501 1.4:-51628673 MS.gene47429:CDS
GCGGTTCCAGGAAGACGCAA+TGG 0.619848 1.4:-51630851 MS.gene47429:CDS
GAGAGGTCACGAAGATGAGG+AGG 0.622353 1.4:+51630752 None:intergenic
AGAAAGAGGAGCCAACTTGG+AGG 0.623979 1.4:-51629653 MS.gene47429:CDS
CTAGAATCCGTTGATTCTGA+GGG 0.625503 1.4:-51629426 MS.gene47429:CDS
AGTATCACCCTCAGAATCAA+CGG 0.635677 1.4:+51629419 None:intergenic
GAAGACGATGAAGAATCGAA+TGG 0.659423 1.4:-51630818 MS.gene47429:CDS
GGAGGCTACAGATGAAGATG+GGG 0.668284 1.4:-51629635 MS.gene47429:CDS
TGGCAGTATTGATGAACCAG+TGG 0.694587 1.4:-51629829 MS.gene47429:CDS
CAGTATTGATGAACCAGTGG+AGG 0.701396 1.4:-51629826 MS.gene47429:CDS
AACCTGGCACAGATGCAAGG+AGG 0.718959 1.4:-51628670 MS.gene47429:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTTAATTTGATG+CGG - chr1.4:51629020-51629039 MS.gene47429:intron 10.0%
!!! GATAAATTGTTTTATTTTAA+TGG - chr1.4:51628951-51628970 MS.gene47429:intron 10.0%
!! TATATTTATAAATCCTGATA+TGG + chr1.4:51629991-51630010 None:intergenic 15.0%
!!! AAATTGATTTTGATACATTT+AGG + chr1.4:51630378-51630397 None:intergenic 15.0%
!!! AATTGATTTTGATACATTTA+GGG + chr1.4:51630377-51630396 None:intergenic 15.0%
!!! CAATGTTTTAAAAATCAAAT+TGG + chr1.4:51629501-51629520 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTGGGAA+GGG - chr1.4:51630502-51630521 MS.gene47429:intron 15.0%
!! TTGAGTGTAAAAATAATGTT+TGG - chr1.4:51630281-51630300 MS.gene47429:intron 20.0%
!! TTTCATTTAATGTTGTATAG+TGG - chr1.4:51629146-51629165 MS.gene47429:intron 20.0%
!!! ACATTTGCTAACATAATTTT+TGG - chr1.4:51630773-51630792 MS.gene47429:CDS 20.0%
!!! ATATATTTTGAAGTAGCTAT+AGG + chr1.4:51628895-51628914 None:intergenic 20.0%
!!! ATTGATTTTGATACATTTAG+GGG + chr1.4:51630376-51630395 None:intergenic 20.0%
!!! CAATCAAAATCAATTTTCAA+TGG + chr1.4:51630187-51630206 None:intergenic 20.0%
!!! GTGCGTTTTTTTTTTTTTTT+GGG - chr1.4:51630497-51630516 MS.gene47429:intron 20.0%
!!! GTTTTTTTTTTTTTTTGGGA+AGG - chr1.4:51630501-51630520 MS.gene47429:intron 20.0%
!!! TATATTTTGAAGTAGCTATA+GGG + chr1.4:51628894-51628913 None:intergenic 20.0%
!!! TGTGCGTTTTTTTTTTTTTT+TGG - chr1.4:51630496-51630515 MS.gene47429:intron 20.0%
!!! TTTTTTTTTTTTTTGGGAAG+GGG - chr1.4:51630503-51630522 MS.gene47429:intron 20.0%
! AAAGCAAAACTTATATGGAA+AGG - chr1.4:51630706-51630725 MS.gene47429:intron 25.0%
! AATTATGTTAGCAAATGTTG+AGG + chr1.4:51630771-51630790 None:intergenic 25.0%
! AGAAATCATGTACATAAAGT+TGG + chr1.4:51630574-51630593 None:intergenic 25.0%
! AGCATCATAAGAATTAAGAA+AGG + chr1.4:51629605-51629624 None:intergenic 25.0%
! AGTGTAAAAATAATGTTTGG+AGG - chr1.4:51630284-51630303 MS.gene47429:intron 25.0%
! ATAATTGCAGATAACTTGAA+TGG - chr1.4:51629639-51629658 MS.gene47429:CDS 25.0%
! CCACTAATTATAACAATGTA+GGG - chr1.4:51630453-51630472 MS.gene47429:intron 25.0%
! GTGTAAAAATAATGTTTGGA+GGG - chr1.4:51630285-51630304 MS.gene47429:intron 25.0%
! TAAAAAAGAAAGAATGAGCA+TGG + chr1.4:51629753-51629772 None:intergenic 25.0%
! TCCACTAATTATAACAATGT+AGG - chr1.4:51630452-51630471 MS.gene47429:intron 25.0%
! TTAATTAGAATAAACCCTAG+AGG - chr1.4:51630328-51630347 MS.gene47429:intron 25.0%
! TTCAAAATGACCATATAAAC+AGG + chr1.4:51629712-51629731 None:intergenic 25.0%
!! TGTTATAATTAGTGGATGTT+GGG + chr1.4:51630448-51630467 None:intergenic 25.0%
!! TTGTTATAATTAGTGGATGT+TGG + chr1.4:51630449-51630468 None:intergenic 25.0%
!!! ATTTTAATGGCATTTGATTC+TGG - chr1.4:51628964-51628983 MS.gene47429:intron 25.0%
ACAATGCTGAGCATATAAAA+AGG - chr1.4:51630036-51630055 MS.gene47429:intron 30.0%
ATAAAGTTGGAACAGGATTA+GGG + chr1.4:51630561-51630580 None:intergenic 30.0%
ATGTTGTCAAATATCAGCTA+TGG - chr1.4:51629346-51629365 MS.gene47429:intron 30.0%
ATTAGATTGTTGCTGTCTAA+TGG - chr1.4:51630671-51630690 MS.gene47429:intron 30.0%
ATTGAAATTGACAGTGCAAT+CGG - chr1.4:51629093-51629112 MS.gene47429:intron 30.0%
CAAGATATGGAGAACAAATA+AGG + chr1.4:51630597-51630616 None:intergenic 30.0%
CCCTACATTGTTATAATTAG+TGG + chr1.4:51630456-51630475 None:intergenic 30.0%
CTTCATTTGACCTGTTTATA+TGG - chr1.4:51629699-51629718 MS.gene47429:intron 30.0%
TATCATACTGGGAAGTTATT+GGG - chr1.4:51629576-51629595 MS.gene47429:intron 30.0%
TCCACAAAGCAAAACTTATA+TGG - chr1.4:51630701-51630720 MS.gene47429:intron 30.0%
TTTCGTTCAATGTTGTATAG+TGG - chr1.4:51629260-51629279 MS.gene47429:intron 30.0%
TTTCTTTGAATGACCATATC+AGG - chr1.4:51629975-51629994 MS.gene47429:intron 30.0%
! ATCAAATCAACGACATCTTT+TGG + chr1.4:51629476-51629495 None:intergenic 30.0%
! ATTGACTTTGGCTTATTGAA+TGG + chr1.4:51630131-51630150 None:intergenic 30.0%
! TCCATATAAGTTTTGCTTTG+TGG + chr1.4:51630705-51630724 None:intergenic 30.0%
! TGCTATTTAGTACAAGATGT+TGG - chr1.4:51629216-51629235 MS.gene47429:intron 30.0%
! TGGGAATTCAAACTTTTAGA+AGG + chr1.4:51630111-51630130 None:intergenic 30.0%
! TTGACTTTGGCTTATTGAAT+GGG + chr1.4:51630130-51630149 None:intergenic 30.0%
!! GGGAATTCAAACTTTTAGAA+GGG + chr1.4:51630110-51630129 None:intergenic 30.0%
!! TTTTAATCTGAAACATGTCG+TGG - chr1.4:51629776-51629795 MS.gene47429:CDS 30.0%
AACTTCCCAGTATGATAGTT+AGG + chr1.4:51629573-51629592 None:intergenic 35.0%
AGACATCCTAACTATCATAC+TGG - chr1.4:51629564-51629583 MS.gene47429:intron 35.0%
ATCTGCAATTATGCAACACA+GGG + chr1.4:51629631-51629650 None:intergenic 35.0%
ATGTTGTATAGTGGCACTAT+AGG - chr1.4:51629155-51629174 MS.gene47429:intron 35.0%
ATTAGGGATTAGGATTTAGC+CGG + chr1.4:51630545-51630564 None:intergenic 35.0%
CATAAAGTTGGAACAGGATT+AGG + chr1.4:51630562-51630581 None:intergenic 35.0%
CATGTACATAAAGTTGGAAC+AGG + chr1.4:51630568-51630587 None:intergenic 35.0%
CTATAGGGTTTAACAGAAAG+AGG + chr1.4:51628879-51628898 None:intergenic 35.0%
CTATCATACTGGGAAGTTAT+TGG - chr1.4:51629575-51629594 MS.gene47429:intron 35.0%
GACATCCTAACTATCATACT+GGG - chr1.4:51629565-51629584 MS.gene47429:intron 35.0%
GCGAAAATAGTCACAAGATA+TGG + chr1.4:51630610-51630629 None:intergenic 35.0%
TATCTGCAATTATGCAACAC+AGG + chr1.4:51629632-51629651 None:intergenic 35.0%
TGTTGTATAGTGGCACTATA+GGG - chr1.4:51629156-51629175 MS.gene47429:intron 35.0%
AATGGTCTCTTCGTAGAAGA+AGG - chr1.4:51628688-51628707 MS.gene47429:CDS 40.0%
AATTGACAGTGCAATCGGTT+TGG - chr1.4:51629098-51629117 MS.gene47429:intron 40.0%
ACAATCTGTGATGACAATGC+CGG - chr1.4:51629409-51629428 MS.gene47429:intron 40.0%
AGAGAATTCTGTTTGCCTCT+AGG + chr1.4:51630346-51630365 None:intergenic 40.0%
AGTATCACCCTCAGAATCAA+CGG + chr1.4:51630072-51630091 None:intergenic 40.0%
ATAGTGGCACTATAGCTTAG+TGG - chr1.4:51629276-51629295 MS.gene47429:intron 40.0%
CAATCGAACTGAGACAAATC+CGG + chr1.4:51629431-51629450 None:intergenic 40.0%
GAAGACGATGAAGAATCGAA+TGG - chr1.4:51628670-51628689 MS.gene47429:CDS 40.0%
GAGAATTCTGTTTGCCTCTA+GGG + chr1.4:51630345-51630364 None:intergenic 40.0%
GGGATCAAATGAGTAGATAC+CGG - chr1.4:51630523-51630542 MS.gene47429:intron 40.0%
TGGATGTTGGGATTCAGTTT+GGG + chr1.4:51630436-51630455 None:intergenic 40.0%
TTGCAGATGCTACTAGAAAG+AGG - chr1.4:51629821-51629840 MS.gene47429:CDS 40.0%
TTGGAACAGGATTAGGGATT+AGG + chr1.4:51630555-51630574 None:intergenic 40.0%
! TAGCTCTGTTAAGTAGAAGC+TGG + chr1.4:51630016-51630035 None:intergenic 40.0%
! TCAACGACATCTTTTGGTCA+TGG + chr1.4:51629470-51629489 None:intergenic 40.0%
! TGTACTAAAGAGCATATCGC+AGG + chr1.4:51629324-51629343 None:intergenic 40.0%
!! CTAGAATCCGTTGATTCTGA+GGG - chr1.4:51630062-51630081 MS.gene47429:intron 40.0%
AAGTCAATCCAACGACCTTC+TGG - chr1.4:51630143-51630162 MS.gene47429:intron 45.0%
ACTAGAAAGAGGAGCCAACT+TGG - chr1.4:51629832-51629851 MS.gene47429:CDS 45.0%
ATAGTGGCACTATAGGGAAG+TGG - chr1.4:51629162-51629181 MS.gene47429:intron 45.0%
ATTGATGAACCAGTGGAGGA+TGG - chr1.4:51629666-51629685 MS.gene47429:intron 45.0%
CGGATTTGTCTCAGTTCGAT+TGG - chr1.4:51629429-51629448 MS.gene47429:CDS 45.0%
CTCTTCATCATGCTGCAAGA+GGG - chr1.4:51630633-51630652 MS.gene47429:intron 45.0%
GGATGTTGGGATTCAGTTTG+GGG + chr1.4:51630435-51630454 None:intergenic 45.0%
GTGGATGTTGGGATTCAGTT+TGG + chr1.4:51630437-51630456 None:intergenic 45.0%
TCTTCATCATGCTGCAAGAG+GGG - chr1.4:51630634-51630653 MS.gene47429:intron 45.0%
TGGAGGCTACAGATGAAGAT+GGG - chr1.4:51629852-51629871 MS.gene47429:intron 45.0%
TTCAAACCATTGCGTCTTCC+TGG + chr1.4:51628646-51628665 None:intergenic 45.0%
TTCATCTGTAGCCTCCAAGT+TGG + chr1.4:51629849-51629868 None:intergenic 45.0%
TTGATGAACCAGTGGAGGAT+GGG - chr1.4:51629667-51629686 MS.gene47429:intron 45.0%
TTGGAGGCTACAGATGAAGA+TGG - chr1.4:51629851-51629870 MS.gene47429:intron 45.0%
! GAAGGTCGTTGGATTGACTT+TGG + chr1.4:51630143-51630162 None:intergenic 45.0%
!! CAGTATTGATGAACCAGTGG+AGG - chr1.4:51629662-51629681 MS.gene47429:CDS 45.0%
!! GCTAGAATCCGTTGATTCTG+AGG - chr1.4:51630061-51630080 MS.gene47429:intron 45.0%
!! TGGCAGTATTGATGAACCAG+TGG - chr1.4:51629659-51629678 MS.gene47429:CDS 45.0%
!! TGGTCATTTTGAATGCGCTC+AGG - chr1.4:51629719-51629738 MS.gene47429:intron 45.0%
!!! AAACATTTAAAATAATAATT+AGG + chr1.4:51628929-51628948 None:intergenic 5.0%
!!! AACATTTAAAATAATAATTA+GGG + chr1.4:51628928-51628947 None:intergenic 5.0%
AGAAAGAGGAGCCAACTTGG+AGG - chr1.4:51629835-51629854 MS.gene47429:CDS 50.0%
AGAACCAACCACACACCAGA+AGG + chr1.4:51630161-51630180 None:intergenic 50.0%
AGGTTCAGGTAACTCTGCAG+GGG + chr1.4:51630803-51630822 None:intergenic 50.0%
CAGGTTCAGGTAACTCTGCA+GGG + chr1.4:51630804-51630823 None:intergenic 50.0%
CCTCTTCATCATGCTGCAAG+AGG - chr1.4:51630632-51630651 MS.gene47429:intron 50.0%
CCTCTTGCAGCATGATGAAG+AGG + chr1.4:51630635-51630654 None:intergenic 50.0%
CCTTTACACGATGCTTGTGC+AGG - chr1.4:51629881-51629900 MS.gene47429:intron 50.0%
GGAGGCTACAGATGAAGATG+GGG - chr1.4:51629853-51629872 MS.gene47429:intron 50.0%
TGATGAACCAGTGGAGGATG+GGG - chr1.4:51629668-51629687 MS.gene47429:intron 50.0%
TTACACGATGCTTGTGCAGG+AGG - chr1.4:51629884-51629903 MS.gene47429:intron 50.0%
! CCTGCACAAGCATCGTGTAA+AGG + chr1.4:51629884-51629903 None:intergenic 50.0%
AACCTGGCACAGATGCAAGG+AGG - chr1.4:51630818-51630837 MS.gene47429:CDS 55.0%
ACCACACACCAGAAGGTCGT+TGG + chr1.4:51630154-51630173 None:intergenic 55.0%
ACGACCTTCTGGTGTGTGGT+TGG - chr1.4:51630154-51630173 MS.gene47429:intron 55.0%
CCAGGTTCAGGTAACTCTGC+AGG + chr1.4:51630805-51630824 None:intergenic 55.0%
CCTGCAGAGTTACCTGAACC+TGG - chr1.4:51630802-51630821 MS.gene47429:CDS 55.0%
CTGAACCTGGCACAGATGCA+AGG - chr1.4:51630815-51630834 MS.gene47429:CDS 55.0%
CTTGCATCTGTGCCAGGTTC+AGG + chr1.4:51630817-51630836 None:intergenic 55.0%
GAGAGGTCACGAAGATGAGG+AGG + chr1.4:51628739-51628758 None:intergenic 55.0%
GTTGAGGTCACCGTGTGTTG+CGG + chr1.4:51628767-51628786 None:intergenic 55.0%
TCCAACGACCTTCTGGTGTG+TGG - chr1.4:51630150-51630169 MS.gene47429:intron 55.0%
TGATGCTGCTGCTACTGCCA+TGG - chr1.4:51630846-51630865 MS.gene47429:CDS 55.0%
TGGGAGAGGTCACGAAGATG+AGG + chr1.4:51628742-51628761 None:intergenic 55.0%
! GCTATGGCTCTGTTGCGTAG+CGG - chr1.4:51629362-51629381 MS.gene47429:intron 55.0%
AGCCTCCTTGCATCTGTGCC+AGG + chr1.4:51630823-51630842 None:intergenic 60.0%
CTCTCCCATGCCGCAACACA+CGG - chr1.4:51628754-51628773 MS.gene47429:intron 60.0%
GCAGTATCCCCATCCTCCAC+TGG + chr1.4:51629678-51629697 None:intergenic 60.0%
GCGGTTCCAGGAAGACGCAA+TGG - chr1.4:51628637-51628656 MS.gene47429:CDS 60.0%
GTCACCGTGTGTTGCGGCAT+GGG + chr1.4:51628761-51628780 None:intergenic 60.0%
!! AGAGAGTACCGAGAGCGAGG+CGG + chr1.4:51628795-51628814 None:intergenic 60.0%
!! GAGAGAGAGTACCGAGAGCG+AGG + chr1.4:51628798-51628817 None:intergenic 60.0%
CGTGTGTTGCGGCATGGGAG+AGG + chr1.4:51628756-51628775 None:intergenic 65.0%
GGTCACCGTGTGTTGCGGCA+TGG + chr1.4:51628762-51628781 None:intergenic 65.0%
! AGTACCGAGAGCGAGGCGGA+GGG + chr1.4:51628791-51628810 None:intergenic 65.0%
AACGCCCTCCGCCTCGCTCT+CGG - chr1.4:51628784-51628803 MS.gene47429:CDS 70.0%
!! GAGTACCGAGAGCGAGGCGG+AGG + chr1.4:51628792-51628811 None:intergenic 70.0%
!! GAGCGAGGCGGAGGGCGTTG+AGG + chr1.4:51628783-51628802 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 51628634 51630876 51628634 ID=MS.gene47429
chr1.4 mRNA 51628634 51630876 51628634 ID=MS.gene47429.t1;Parent=MS.gene47429
chr1.4 exon 51630735 51630876 51630735 ID=MS.gene47429.t1.exon1;Parent=MS.gene47429.t1
chr1.4 CDS 51630735 51630876 51630735 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
chr1.4 exon 51629770 51629861 51629770 ID=MS.gene47429.t1.exon2;Parent=MS.gene47429.t1
chr1.4 CDS 51629770 51629861 51629770 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
chr1.4 exon 51629605 51629683 51629605 ID=MS.gene47429.t1.exon3;Parent=MS.gene47429.t1
chr1.4 CDS 51629605 51629683 51629605 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
chr1.4 exon 51629419 51629513 51629419 ID=MS.gene47429.t1.exon4;Parent=MS.gene47429.t1
chr1.4 CDS 51629419 51629513 51629419 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
chr1.4 exon 51628783 51628878 51628783 ID=MS.gene47429.t1.exon5;Parent=MS.gene47429.t1
chr1.4 CDS 51628783 51628878 51628783 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
chr1.4 exon 51628634 51628711 51628634 ID=MS.gene47429.t1.exon6;Parent=MS.gene47429.t1
chr1.4 CDS 51628634 51628711 51628634 ID=cds.MS.gene47429.t1;Parent=MS.gene47429.t1
Gene Sequence

>MS.gene47429

ATGGCGGTTCCAGGAAGACGCAATGGTTTGAATGAAGAAGACGATGAAGAATCGAATGGTCTCTTCGTAGAAGAAGGTCTTGTTGCTGAAGAATCTGATACTCCTCCTCATCTTCGTGACCTCTCCCATGCCGCAACACACGGTGACCTCAACGCCCTCCGCCTCGCTCTCGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTACACGCATAATTTTTCTGTCTTTTTTAATTCAATATTCACCTCTTTCTGTTAAACCCTATAGCTACTTCAAAATATATCAATCTTAAACCCTAATTATTATTTTAAATGTTTTAGATAAATTGTTTTATTTTAATGGCATTTGATTCTGGTACGAATTCGTTGTTTGTTGTTTCTTTGCGTTGATTAAATTTTTAATTTGATGCGGATTGAGATGATTTGTAAAGAAAACTTTATAATTACATAGTAATTTAAGAAATTGAAATTGACAGTGCAATCGGTTTGGTTATTTTGACTTGTTTGATAGTTTGTTTCATTTAATGTTGTATAGTGGCACTATAGGGAAGTGGAATTTTGAATAAATCACTATTGTTCGCGATATGCTATTTAGTACAAGATGTTGGCAAATATCACTATTGTTCAAATTTCGTTCAATGTTGTATAGTGGCACTATAGCTTAGTGGAATTTGAAAAAATCTATATTGTCCTGCGATATGCTCTTTAGTACAACATGTTGTCAAATATCAGCTATGGCTCTGTTGCGTAGCGGAACTTGAACAAACTTTTATTCTTCACAATCTGTGATGACAATGCCGGATTTGTCTCAGTTCGATTGGTATAAAACAGTTGAACCATGACCAAAAGATGTCGTTGATTTGATGTCCAATTTGATTTTTAAAACATTGAATTTTATACGATAGTTGTCAATTGTTTGAAATGTGAACTAAAAGACATCCTAACTATCATACTGGGAAGTTATTGGGTGTCCTTTCTTAATTCTTATGATGCTTATCCCTGTGTTGCATAATTGCAGATAACTTGAATGGCAGTATTGATGAACCAGTGGAGGATGGGGATACTGCTCTTCATTTGACCTGTTTATATGGTCATTTTGAATGCGCTCAGGTTTGTTATCCATGCTCATTCTTTCTTTTTTATGCTTTTAATCTGAAACATGTCGTGGATTATTGATCTTGATCAATGAATTGCAGATGCTACTAGAAAGAGGAGCCAACTTGGAGGCTACAGATGAAGATGGGGCAATTCCTTTACACGATGCTTGTGCAGGAGGTAGTTTAAATTATCATGTTATAATTGTTGAACTCTTTAAATTCATTCGTTAAGATTTGTGATGTTACTTTTCTTTGAATGACCATATCAGGATTTATAAATATAGTCCAGCTTCTACTTAACAGAGCTAACAATGCTGAGCATATAAAAAGGATGCTAGAATCCGTTGATTCTGAGGGTGATACTGTGAGTATTTATTTACCCTTCTAAAAGTTTGAATTCCCATTCAATAAGCCAAAGTCAATCCAACGACCTTCTGGTGTGTGGTTGGTTCTACGCCATTGAAAATTGATTTTGATTGAATTGACTTGTAAAATTTATTTTAGAAAATAATTTATGTCTGAATGAGTTGTAAAAATGAGTTGAACAATAAATTTGAGTGTAAAAATAATGTTTGGAGGGAAAAGCTGAAAATCTTAGCTTTAATTAGAATAAACCCTAGAGGCAAACAGAATTCTCTTTGAGTACCCCTAAATGTATCAAAATCAATTTTAAATCTTCATAAATCATAATCACTTTTGACTCTCCCCAAACTGAATCCCAACATCCACTAATTATAACAATGTAGGGTACTTAATATTAAACTTATTTGTGCGTTTTTTTTTTTTTTTGGGAAGGGGATCAAATGAGTAGATACCGGCTAAATCCTAATCCCTAATCCTGTTCCAACTTTATGTACATGATTTCTCCTTATTTGTTCTCCATATCTTGTGACTATTTTCGCAGCCTCTTCATCATGCTGCAAGAGGGGAGCATGCTGATGTAATTAGATTGTTGCTGTCTAATGGTGCATCATCCACAAAGCAAAACTTATATGGAAAGGTATAGCTTTTAAACGAATTTAAAAATATCAGTTTCTAGTCCTCAACATTTGCTAACATAATTTTTGGCAGACCCCTGCAGAGTTACCTGAACCTGGCACAGATGCAAGGAGGCTGTTTGATGCTGCTGCTACTGCCATGGAAATCTAA
Protein sequence

>MS.gene47429.t1

MAVPGRRNGLNEEDDEESNGLFVEEGLVAEESDTPPHLRDLSHAATHDNLNGSIDEPVEDGDTALHLTCLYGHFECAQMLLERGANLEATDEDGAIPLHDACAGGFINIVQLLLNRANNAEHIKRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASSTKQNLYGKTPAELPEPGTDARRLFDAAATAMEI