AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051416.t1 MTR_1g062770 95.567 203 9 0 1 203 1 203 1.51e-140 390
MS.gene051416.t1 MTR_3g009280 37.190 121 68 3 43 163 230 342 4.77e-12 64.3
MS.gene051416.t1 MTR_2g048680 35.000 120 71 2 64 183 94 206 6.35e-12 62.8
MS.gene051416.t1 MTR_2g048680 33.333 132 78 2 55 183 162 286 1.22e-11 62.8
MS.gene051416.t1 MTR_4g113530 28.221 163 90 3 65 200 545 707 3.32e-11 62.0
MS.gene051416.t1 MTR_8g056020 36.634 101 57 1 71 171 262 355 3.77e-11 61.6
MS.gene051416.t1 MTR_5g026800 29.861 144 94 1 40 183 14 150 7.75e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051416.t1 AT3G09890 61.809 199 74 2 1 197 1 199 1.73e-78 234
MS.gene051416.t1 AT3G09890 60.811 148 56 2 1 146 1 148 3.52e-52 165
MS.gene051416.t1 AT4G19150 30.556 144 93 1 40 183 19 155 4.24e-14 68.9
MS.gene051416.t1 AT5G40160 31.844 179 108 5 12 183 119 290 7.26e-13 66.2
MS.gene051416.t1 AT4G35450 35.537 121 70 4 43 163 224 336 1.99e-12 65.1
MS.gene051416.t1 AT4G35450 35.537 121 70 4 43 163 224 336 1.99e-12 65.1
MS.gene051416.t1 AT4G35450 35.537 121 70 4 43 163 224 336 1.99e-12 65.1
MS.gene051416.t1 AT2G17390 36.364 121 69 3 43 163 226 338 2.03e-12 65.1
MS.gene051416.t1 AT2G17390 33.333 111 67 1 73 183 222 325 2.00e-11 62.4
MS.gene051416.t1 AT2G14255 27.374 179 100 3 29 180 19 194 2.33e-12 65.5
MS.gene051416.t1 AT4G35450 35.537 121 70 4 43 163 186 298 2.62e-12 64.7
MS.gene051416.t1 AT4G35450 35.537 121 70 4 43 163 232 344 2.64e-12 65.1
MS.gene051416.t1 AT5G40160 31.953 169 101 5 12 173 119 280 3.99e-12 63.9
MS.gene051416.t1 AT5G20350 30.357 168 90 2 40 180 34 201 2.39e-11 62.4
MS.gene051416.t1 AT4G19150 32.110 109 67 1 75 183 31 132 3.97e-11 60.5
MS.gene051416.t1 AT2G25600 29.469 207 106 6 10 185 518 715 4.75e-11 61.6
MS.gene051416.t1 AT2G03430 30.769 156 93 5 32 180 5 152 6.64e-11 60.1

Find 61 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTTGACCTGTTTATA+TGG 0.261973 1.1:-47359980 MS.gene051416:CDS
GTTCAAACCATTGCGTCTTC+CGG 0.263029 1.1:+47360976 None:intergenic
TTCAAACCATTGCGTCTTCC+GGG 0.284889 1.1:+47360977 None:intergenic
TCCACAAAGCAAAACTTATA+TGG 0.299371 1.1:-47358978 MS.gene051416:CDS
CTTGCATCTGTGCCAGGTTC+AGG 0.300371 1.1:+47358865 None:intergenic
ATCACATCAATGGCGGTTCC+CGG 0.373069 1.1:-47360995 None:intergenic
ATTAGATTGTTGCTGTCTAA+TGG 0.400508 1.1:-47359008 MS.gene051416:CDS
CCAGGTTCAGGTAACTCTGC+AGG 0.402815 1.1:+47358877 None:intergenic
TTCGAAATGACCATATAAAC+AGG 0.435233 1.1:+47359970 None:intergenic
GGAGGAGTATCAGATTCTTC+AGG 0.441287 1.1:+47360902 None:intergenic
AACGCCCTCCGCCACGCTCT+CGG 0.446028 1.1:-47360836 MS.gene051416:intron
AGCCTCCTTGCATCTGTGCC+AGG 0.449249 1.1:+47358859 None:intergenic
TAGCTCTGTTAAGTAGAAGT+TGG 0.455736 1.1:+47359666 None:intergenic
CCTTTACACGATGCTTGTGC+AGG 0.483914 1.1:-47359798 MS.gene051416:CDS
TGATGAACCGGTGGAGGATG+GGG 0.487017 1.1:-47360011 MS.gene051416:CDS
ACTAGAAAGAGGAGCCAACT+TGG 0.490839 1.1:-47359847 MS.gene051416:CDS
GTCACCGTGTGTAGCGGCAT+GGG 0.498930 1.1:+47360862 None:intergenic
AGGTACCGAGAGCGTGGCGG+AGG 0.501135 1.1:+47360831 None:intergenic
TGGTCATTTCGAATGCGCTC+AGG 0.503911 1.1:-47359960 MS.gene051416:intron
TTGATGAACCGGTGGAGGAT+GGG 0.512299 1.1:-47360012 MS.gene051416:CDS
GAATGGTAGTATTGATGAAC+CGG 0.518198 1.1:-47360023 MS.gene051416:CDS
TTGGAGGCTACAGATGAAGA+TGG 0.525829 1.1:-47359828 MS.gene051416:CDS
TGGAGGCTACAGATGAAGAT+GGG 0.526662 1.1:-47359827 MS.gene051416:CDS
CAGGTTCAGGTAACTCTGCA+GGG 0.527694 1.1:+47358878 None:intergenic
ATTGATGAACCGGTGGAGGA+TGG 0.527986 1.1:-47360013 MS.gene051416:CDS
CTCTCCCATGCCGCTACACA+CGG 0.529214 1.1:-47360866 MS.gene051416:CDS
CCTCTTGCAGCATGATGAAG+AGG 0.537041 1.1:+47359047 None:intergenic
GGTCACCGTGTGTAGCGGCA+TGG 0.542197 1.1:+47360861 None:intergenic
CCTGCAGAGTTACCTGAACC+TGG 0.542445 1.1:-47358877 MS.gene051416:CDS
CGTGTGTAGCGGCATGGGAG+AGG 0.545512 1.1:+47360867 None:intergenic
CCTGCACAAGCATCGTGTAA+AGG 0.546613 1.1:+47359798 None:intergenic
AATGCTATATTAGATTTCCA+TGG 0.546731 1.1:+47358816 None:intergenic
ATGATTGCAGATAACTTGAA+TGG 0.547755 1.1:-47360040 MS.gene051416:intron
TTGCAGCTGCTACTAGAAAG+AGG 0.551764 1.1:-47359858 MS.gene051416:intron
TTCATCTGTAGCCTCCAAGT+TGG 0.553926 1.1:+47359833 None:intergenic
CTCTTCATCATGCTGCAAGA+GGG 0.557025 1.1:-47359046 MS.gene051416:CDS
CCTCTTCATCATGCTGCAAG+AGG 0.568776 1.1:-47359047 MS.gene051416:CDS
GAGCGTGGCGGAGGGCGTTG+AGG 0.571543 1.1:+47360840 None:intergenic
TTACACGATGCTTGTGCAGG+AGG 0.583004 1.1:-47359795 MS.gene051416:intron
GCAGTATCCCCATCCTCCAC+CGG 0.583111 1.1:+47360004 None:intergenic
GAGAGGAGGTACCGAGAGCG+TGG 0.587961 1.1:+47360825 None:intergenic
AAAGCAAAACTTATATGGAA+AGG 0.588451 1.1:-47358973 MS.gene051416:intron
TCTTCATCATGCTGCAAGAG+GGG 0.593759 1.1:-47359045 MS.gene051416:CDS
GCTTGAATCAGTTGATTCTG+AGG 0.595184 1.1:-47359618 MS.gene051416:CDS
GCGGTTCCCGGAAGACGCAA+TGG 0.595583 1.1:-47360983 MS.gene051416:CDS
TGATGCTGCTGCTACTGCCA+TGG 0.597475 1.1:-47358833 MS.gene051416:CDS
TGGGAGAGGTCACGAAGATG+AGG 0.605218 1.1:+47360881 None:intergenic
ACAATGCTGAGCATATAAGA+AGG 0.607273 1.1:-47359643 MS.gene051416:CDS
GTTGAGGTCACCGTGTGTAG+CGG 0.611923 1.1:+47360856 None:intergenic
AGGTTCAGGTAACTCTGCAG+GGG 0.613740 1.1:+47358879 None:intergenic
CTGAACCTGGCACAGATGCA+AGG 0.614501 1.1:-47358864 MS.gene051416:CDS
GAGAGGTCACGAAGATGAGG+AGG 0.622353 1.1:+47360884 None:intergenic
AGAAAGAGGAGCCAACTTGG+AGG 0.623979 1.1:-47359844 MS.gene051416:CDS
TAGTATTGATGAACCGGTGG+AGG 0.631012 1.1:-47360017 MS.gene051416:CDS
GGTACCGAGAGCGTGGCGGA+GGG 0.642938 1.1:+47360832 None:intergenic
CTTGAATCAGTTGATTCTGA+GGG 0.651281 1.1:-47359617 MS.gene051416:CDS
GGAGGCTACAGATGAAGATG+GGG 0.668284 1.1:-47359826 MS.gene051416:CDS
AGGAGGTACCGAGAGCGTGG+CGG 0.673529 1.1:+47360828 None:intergenic
GAAGACGATGAAGAATCGAA+TGG 0.677961 1.1:-47360950 MS.gene051416:CDS
TGGTAGTATTGATGAACCGG+TGG 0.685008 1.1:-47360020 MS.gene051416:CDS
AACCTGGCACAGATGCAAGG+AGG 0.718959 1.1:-47358861 MS.gene051416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAATTTTAATTTGATG+AGG - chr1.1:47359227-47359246 MS.gene051416:intron 10.0%
!! TATATTTATAAATCCTGATA+TGG + chr1.1:47360123-47360142 None:intergenic 15.0%
!!! AAATTGATTTTGATACATTT+AGG + chr1.1:47360510-47360529 None:intergenic 15.0%
!!! AATTGATTTTGATACATTTA+GGG + chr1.1:47360509-47360528 None:intergenic 15.0%
!!! CAATGTTTTAAAAATCAAAT+CGG + chr1.1:47359631-47359650 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTGGGAA+GGG - chr1.1:47360634-47360653 MS.gene051416:intron 15.0%
!! TTGAGTGTAAAAATAATGTT+TGG - chr1.1:47360413-47360432 MS.gene051416:intron 20.0%
!!! AATTTTAATTTGATGAGGAT+TGG - chr1.1:47359232-47359251 MS.gene051416:intron 20.0%
!!! ACATTTGCTAACATAATTTT+TGG - chr1.1:47360905-47360924 MS.gene051416:CDS 20.0%
!!! ATATATTTTGAAGTAGCTAT+AGG + chr1.1:47359110-47359129 None:intergenic 20.0%
!!! ATTGATTTTGATACATTTAG+GGG + chr1.1:47360508-47360527 None:intergenic 20.0%
!!! ATTTTAATTTGATGAGGATT+GGG - chr1.1:47359233-47359252 MS.gene051416:intron 20.0%
!!! GATAAATTGTTTGATTTGTA+TGG - chr1.1:47359166-47359185 MS.gene051416:intron 20.0%
!!! GTGCGTTTTTTTTTTTTTTT+GGG - chr1.1:47360629-47360648 MS.gene051416:intron 20.0%
!!! GTTTTTTTTTTTTTTTGGGA+AGG - chr1.1:47360633-47360652 MS.gene051416:intron 20.0%
!!! TATATTTTGAAGTAGCTATA+GGG + chr1.1:47359109-47359128 None:intergenic 20.0%
!!! TGTGCGTTTTTTTTTTTTTT+TGG - chr1.1:47360628-47360647 MS.gene051416:intron 20.0%
!!! TTTTTTTTTTTTTTGGGAAG+GGG - chr1.1:47360635-47360654 MS.gene051416:intron 20.0%
! AAAGCAAAACTTATATGGAA+AGG - chr1.1:47360838-47360857 MS.gene051416:CDS 25.0%
! AATTATGTTAGCAAATGTTG+AGG + chr1.1:47360903-47360922 None:intergenic 25.0%
! AGAAATCATGTACATAAAGT+TGG + chr1.1:47360706-47360725 None:intergenic 25.0%
! AGTGTAAAAATAATGTTTGG+AGG - chr1.1:47360416-47360435 MS.gene051416:intron 25.0%
! ATTACATCGTATAGTTCAAT+TGG - chr1.1:47359280-47359299 MS.gene051416:intron 25.0%
! CCACTAATTATAACAATGTA+GGG - chr1.1:47360585-47360604 MS.gene051416:intron 25.0%
! GTGTAAAAATAATGTTTGGA+GGG - chr1.1:47360417-47360436 MS.gene051416:intron 25.0%
! TCCACTAATTATAACAATGT+AGG - chr1.1:47360584-47360603 MS.gene051416:intron 25.0%
! TTAATTAGAATAAACCCTAG+AGG - chr1.1:47360460-47360479 MS.gene051416:intron 25.0%
!! TGTTATAATTAGTGGATGTT+GGG + chr1.1:47360580-47360599 None:intergenic 25.0%
!! TTGTTATAATTAGTGGATGT+TGG + chr1.1:47360581-47360600 None:intergenic 25.0%
!!! TGATGTTACTTTTCTTTGAA+TGG - chr1.1:47360097-47360116 MS.gene051416:intron 25.0%
ATAAAGTTGGAACAGGATTA+GGG + chr1.1:47360693-47360712 None:intergenic 30.0%
ATCGTATAGTTCAATTGGTT+TGG - chr1.1:47359285-47359304 MS.gene051416:intron 30.0%
ATGATTGCAGATAACTTGAA+TGG - chr1.1:47359771-47359790 MS.gene051416:intron 30.0%
ATTAGATTGTTGCTGTCTAA+TGG - chr1.1:47360803-47360822 MS.gene051416:intron 30.0%
CAAGATATGGAGAACAAATA+AGG + chr1.1:47360729-47360748 None:intergenic 30.0%
CCCTACATTGTTATAATTAG+TGG + chr1.1:47360588-47360607 None:intergenic 30.0%
CTATAGGGTTTAACAAAAAG+AGG + chr1.1:47359094-47359113 None:intergenic 30.0%
CTTCATTTGACCTGTTTATA+TGG - chr1.1:47359831-47359850 MS.gene051416:CDS 30.0%
GAAAAATTACTATTGTTCCG+TGG - chr1.1:47359377-47359396 MS.gene051416:intron 30.0%
TAGCATACTGGGAAATTATT+TGG - chr1.1:47359708-47359727 MS.gene051416:intron 30.0%
TCCACAAAGCAAAACTTATA+TGG - chr1.1:47360833-47360852 MS.gene051416:intron 30.0%
TGACAACATTTAGTATACCA+CGG + chr1.1:47359397-47359416 None:intergenic 30.0%
TTCGAAATGACCATATAAAC+AGG + chr1.1:47359844-47359863 None:intergenic 30.0%
! TCCATATAAGTTTTGCTTTG+TGG + chr1.1:47360837-47360856 None:intergenic 30.0%
! TTGACTTTGGCTTATTGAAT+AGG + chr1.1:47360262-47360281 None:intergenic 30.0%
!! TTTTAATCTGAAACATGTCG+TGG - chr1.1:47359908-47359927 MS.gene051416:intron 30.0%
!!! ATCAAATCAACGAGGTTTTT+TGG + chr1.1:47359606-47359625 None:intergenic 30.0%
!!! ATTGGTTTGGATATTTTGTG+TGG - chr1.1:47359298-47359317 MS.gene051416:intron 30.0%
ACAATGCTGAGCATATAAGA+AGG - chr1.1:47360168-47360187 MS.gene051416:intron 35.0%
ATTAGGGATTAGGATTTAGC+CGG + chr1.1:47360677-47360696 None:intergenic 35.0%
CATAAAGTTGGAACAGGATT+AGG + chr1.1:47360694-47360713 None:intergenic 35.0%
CATGTACATAAAGTTGGAAC+AGG + chr1.1:47360700-47360719 None:intergenic 35.0%
GCGAAAATAGTCACAAGATA+TGG + chr1.1:47360742-47360761 None:intergenic 35.0%
TTTCGTCCAATGTTGTATAG+CGG - chr1.1:47359332-47359351 MS.gene051416:intron 35.0%
TTTCTTTGAATGGCCATATC+AGG - chr1.1:47360107-47360126 MS.gene051416:intron 35.0%
! CTTGAATCAGTTGATTCTGA+GGG - chr1.1:47360194-47360213 MS.gene051416:intron 35.0%
! GAAGAATCGAATGGTCTTTT+CGG - chr1.1:47358870-47358889 MS.gene051416:CDS 35.0%
! TAGCTCTGTTAAGTAGAAGT+TGG + chr1.1:47360148-47360167 None:intergenic 35.0%
! TAGGAACTCACACTTTTAGA+AGG + chr1.1:47360243-47360262 None:intergenic 35.0%
!! GAATGGTAGTATTGATGAAC+CGG - chr1.1:47359788-47359807 MS.gene051416:intron 35.0%
AATCGGACATCAAATCAACG+AGG + chr1.1:47359614-47359633 None:intergenic 40.0%
AGACATGCTAACTAGCATAC+TGG - chr1.1:47359696-47359715 MS.gene051416:intron 40.0%
AGAGAATTCTGTTTGCCTCT+AGG + chr1.1:47360478-47360497 None:intergenic 40.0%
ATACAGCCGCTATACAACAT+TGG + chr1.1:47359341-47359360 None:intergenic 40.0%
ATCTGCAATCATGCAACACA+GGG + chr1.1:47359763-47359782 None:intergenic 40.0%
GAAGACGATGAAGAATCGAA+TGG - chr1.1:47358861-47358880 MS.gene051416:CDS 40.0%
GACATGCTAACTAGCATACT+GGG - chr1.1:47359697-47359716 MS.gene051416:intron 40.0%
GAGAATTCTGTTTGCCTCTA+GGG + chr1.1:47360477-47360496 None:intergenic 40.0%
GGGATCAAATGAGTAGATAC+CGG - chr1.1:47360655-47360674 MS.gene051416:intron 40.0%
TATCTGCAATCATGCAACAC+AGG + chr1.1:47359764-47359783 None:intergenic 40.0%
TTGGAACAGGATTAGGGATT+AGG + chr1.1:47360687-47360706 None:intergenic 40.0%
! AATGGTCTTTTCGGTGAAGA+AGG - chr1.1:47358879-47358898 MS.gene051416:CDS 40.0%
! GCTTGAATCAGTTGATTCTG+AGG - chr1.1:47360193-47360212 MS.gene051416:intron 40.0%
AAGTCAATCCAACGACCTTC+TGG - chr1.1:47360275-47360294 MS.gene051416:intron 45.0%
ACTAGAAAGAGGAGCCAACT+TGG - chr1.1:47359964-47359983 MS.gene051416:CDS 45.0%
ATAGCGGCTGTATAGTGAAG+TGG - chr1.1:47359348-47359367 MS.gene051416:intron 45.0%
CAATCTGTGATTGACACTGC+TGG - chr1.1:47359539-47359558 MS.gene051416:intron 45.0%
CTCTTCATCATGCTGCAAGA+GGG - chr1.1:47360765-47360784 MS.gene051416:intron 45.0%
GTTCAAACCATTGCGTCTTC+CGG + chr1.1:47358838-47358857 None:intergenic 45.0%
TCTTCATCATGCTGCAAGAG+GGG - chr1.1:47360766-47360785 MS.gene051416:intron 45.0%
TGGAGGCTACAGATGAAGAT+GGG - chr1.1:47359984-47360003 MS.gene051416:CDS 45.0%
TGGATGTTGGGATTCAGCTT+GGG + chr1.1:47360568-47360587 None:intergenic 45.0%
TTCAAACCATTGCGTCTTCC+GGG + chr1.1:47358837-47358856 None:intergenic 45.0%
TTCATCTGTAGCCTCCAAGT+TGG + chr1.1:47359981-47360000 None:intergenic 45.0%
TTGCAGCTGCTACTAGAAAG+AGG - chr1.1:47359953-47359972 MS.gene051416:intron 45.0%
TTGGAGGCTACAGATGAAGA+TGG - chr1.1:47359983-47360002 MS.gene051416:CDS 45.0%
! GAAGGTCGTTGGATTGACTT+TGG + chr1.1:47360275-47360294 None:intergenic 45.0%
!! GGAGGAGTATCAGATTCTTC+AGG + chr1.1:47358912-47358931 None:intergenic 45.0%
!! TAGTATTGATGAACCGGTGG+AGG - chr1.1:47359794-47359813 MS.gene051416:intron 45.0%
!! TGGTAGTATTGATGAACCGG+TGG - chr1.1:47359791-47359810 MS.gene051416:intron 45.0%
!! AAAGATTAAAAATAATAATT+AGG + chr1.1:47359144-47359163 None:intergenic 5.0%
!! AAGATTAAAAATAATAATTA+GGG + chr1.1:47359143-47359162 None:intergenic 5.0%
AGAAAGAGGAGCCAACTTGG+AGG - chr1.1:47359967-47359986 MS.gene051416:CDS 50.0%
AGAACCAACCACACACCAGA+AGG + chr1.1:47360293-47360312 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1.1:47359004-47359023 None:intergenic 50.0%
AGGTTCAGGTAACTCTGCAG+GGG + chr1.1:47360935-47360954 None:intergenic 50.0%
ATTGATGAACCGGTGGAGGA+TGG - chr1.1:47359798-47359817 MS.gene051416:CDS 50.0%
CAGGTTCAGGTAACTCTGCA+GGG + chr1.1:47360936-47360955 None:intergenic 50.0%
CCTCTTCATCATGCTGCAAG+AGG - chr1.1:47360764-47360783 MS.gene051416:intron 50.0%
CCTCTTGCAGCATGATGAAG+AGG + chr1.1:47360767-47360786 None:intergenic 50.0%
CCTTTACACGATGCTTGTGC+AGG - chr1.1:47360013-47360032 MS.gene051416:CDS 50.0%
GCCATTGCTCTGTTGCATTG+CGG - chr1.1:47359491-47359510 MS.gene051416:intron 50.0%
GGAGGCTACAGATGAAGATG+GGG - chr1.1:47359985-47360004 MS.gene051416:CDS 50.0%
GGATGTTGGGATTCAGCTTG+GGG + chr1.1:47360567-47360586 None:intergenic 50.0%
GTGGATGTTGGGATTCAGCT+TGG + chr1.1:47360569-47360588 None:intergenic 50.0%
TCCGCAATGCAACAGAGCAA+TGG + chr1.1:47359495-47359514 None:intergenic 50.0%
TGGTCATTTCGAATGCGCTC+AGG - chr1.1:47359851-47359870 MS.gene051416:CDS 50.0%
TTACACGATGCTTGTGCAGG+AGG - chr1.1:47360016-47360035 MS.gene051416:CDS 50.0%
TTGATGAACCGGTGGAGGAT+GGG - chr1.1:47359799-47359818 MS.gene051416:CDS 50.0%
! CCTGCACAAGCATCGTGTAA+AGG + chr1.1:47360016-47360035 None:intergenic 50.0%
AACCTGGCACAGATGCAAGG+AGG - chr1.1:47360950-47360969 MS.gene051416:CDS 55.0%
ACCACACACCAGAAGGTCGT+TGG + chr1.1:47360286-47360305 None:intergenic 55.0%
ACGACCTTCTGGTGTGTGGT+TGG - chr1.1:47360286-47360305 MS.gene051416:intron 55.0%
CCAGGTTCAGGTAACTCTGC+AGG + chr1.1:47360937-47360956 None:intergenic 55.0%
CCTGCAGAGTTACCTGAACC+TGG - chr1.1:47360934-47360953 MS.gene051416:CDS 55.0%
CTGAACCTGGCACAGATGCA+AGG - chr1.1:47360947-47360966 MS.gene051416:CDS 55.0%
CTTGCATCTGTGCCAGGTTC+AGG + chr1.1:47360949-47360968 None:intergenic 55.0%
GAGAGAGAGAGAGAGAGAGG+AGG + chr1.1:47359003-47359022 None:intergenic 55.0%
GAGAGGTCACGAAGATGAGG+AGG + chr1.1:47358930-47358949 None:intergenic 55.0%
GTTGAGGTCACCGTGTGTAG+CGG + chr1.1:47358958-47358977 None:intergenic 55.0%
TCCAACGACCTTCTGGTGTG+TGG - chr1.1:47360282-47360301 MS.gene051416:intron 55.0%
TGATGAACCGGTGGAGGATG+GGG - chr1.1:47359800-47359819 MS.gene051416:CDS 55.0%
TGATGCTGCTGCTACTGCCA+TGG - chr1.1:47360978-47360997 MS.gene051416:CDS 55.0%
TGGGAGAGGTCACGAAGATG+AGG + chr1.1:47358933-47358952 None:intergenic 55.0%
AGCCTCCTTGCATCTGTGCC+AGG + chr1.1:47360955-47360974 None:intergenic 60.0%
CTCTCCCATGCCGCTACACA+CGG - chr1.1:47358945-47358964 MS.gene051416:intron 60.0%
GCAGTATCCCCATCCTCCAC+CGG + chr1.1:47359810-47359829 None:intergenic 60.0%
GTCACCGTGTGTAGCGGCAT+GGG + chr1.1:47358952-47358971 None:intergenic 60.0%
CGTGTGTAGCGGCATGGGAG+AGG + chr1.1:47358947-47358966 None:intergenic 65.0%
GCGGTTCCCGGAAGACGCAA+TGG - chr1.1:47358828-47358847 MS.gene051416:CDS 65.0%
GGTCACCGTGTGTAGCGGCA+TGG + chr1.1:47358953-47358972 None:intergenic 65.0%
!! AGGAGGTACCGAGAGCGTGG+CGG + chr1.1:47358986-47359005 None:intergenic 65.0%
!! GAGAGGAGGTACCGAGAGCG+TGG + chr1.1:47358989-47359008 None:intergenic 65.0%
AACGCCCTCCGCCACGCTCT+CGG - chr1.1:47358975-47358994 MS.gene051416:CDS 70.0%
! GGTACCGAGAGCGTGGCGGA+GGG + chr1.1:47358982-47359001 None:intergenic 70.0%
!! AGGTACCGAGAGCGTGGCGG+AGG + chr1.1:47358983-47359002 None:intergenic 70.0%
!! GAGCGTGGCGGAGGGCGTTG+AGG + chr1.1:47358974-47358993 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 47358825 47361008 47358825 ID=MS.gene051416
chr1.1 mRNA 47358825 47361008 47358825 ID=MS.gene051416.t1;Parent=MS.gene051416
chr1.1 exon 47360837 47361008 47360837 ID=MS.gene051416.t1.exon1;Parent=MS.gene051416.t1
chr1.1 CDS 47360837 47361008 47360837 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1 exon 47359961 47360052 47359961 ID=MS.gene051416.t1.exon2;Parent=MS.gene051416.t1
chr1.1 CDS 47359961 47360052 47359961 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1 exon 47359796 47359874 47359796 ID=MS.gene051416.t1.exon3;Parent=MS.gene051416.t1
chr1.1 CDS 47359796 47359874 47359796 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1 exon 47359610 47359704 47359610 ID=MS.gene051416.t1.exon4;Parent=MS.gene051416.t1
chr1.1 CDS 47359610 47359704 47359610 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1 exon 47358974 47359069 47358974 ID=MS.gene051416.t1.exon5;Parent=MS.gene051416.t1
chr1.1 CDS 47358974 47359069 47358974 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1 exon 47358825 47358902 47358825 ID=MS.gene051416.t1.exon6;Parent=MS.gene051416.t1
chr1.1 CDS 47358825 47358902 47358825 ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
Gene Sequence

>MS.gene051416

ATGGCGGTTCCCGGAAGACGCAATGGTTTGAACGAAGAAGACGATGAAGAATCGAATGGTCTTTTCGGTGAAGAAGGTCTTGTTCCTGAAGAATCTGATACTCCTCCTCATCTTCGTGACCTCTCCCATGCCGCTACACACGGTGACCTCAACGCCCTCCGCCACGCTCTCGGTACCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAACTGCACAAATTTTTGTCTCTGTTAATTCAATATTTACCTCTTTTTGTTAAACCCTATAGCTACTTCAAAATATATCAATCTAAAACCCTAATTATTATTTTTAATCTTTTAGATAAATTGTTTGATTTGTATGGCATTTGATTCTGATACAAGTCGTTGTTTCTGTGCGTTGATTATAATTTTAATTTGATGAGGATTGGGATTATTTGCAGAGAAAACTTTATAATTACATCGTATAGTTCAATTGGTTTGGATATTTTGTGTGGTTTGTTCGATGTTTCGTCCAATGTTGTATAGCGGCTGTATAGTGAAGTGGAATTTTGAAAAATTACTATTGTTCCGTGGTATACTAAATGTTGTCAAATAGTATCAGTTATAGCTCTGTTGCATAGCGAAATTTGAACAAACTTTTATATATTTTGAAATCTGTGATTCAGCCATTGCTCTGTTGCATTGCGGAATTTGAACTAACTTTTATATTTCGCAATCTGTGATTGACACTGCTGGTTTCGTCTCAGTTCAATCATTTCAAAACAATTGAAGCATGACCAAAAAACCTCGTTGATTTGATGTCCGATTTGATTTTTAAAACATTGAATTATATATACAATAGTTCTCGATTGTGTTATATGTGAACTAAAAGACATGCTAACTAGCATACTGGGAAATTATTTGGTGTTCTTTCTTAATTCTTATGATGCTTATCCCTGTGTTGCATGATTGCAGATAACTTGAATGGTAGTATTGATGAACCGGTGGAGGATGGGGATACTGCTCTTCATTTGACCTGTTTATATGGTCATTTCGAATGCGCTCAGGTTTGATATCATTGCTCATTCATTCTTTTTTATGCTTTTAATCTGAAACATGTCGTGGATTATTGATCTTGATCAATGAATTGCAGCTGCTACTAGAAAGAGGAGCCAACTTGGAGGCTACAGATGAAGATGGGGCAATTCCTTTACACGATGCTTGTGCAGGAGGTAGTTTAAATTATCATATTTTAATTGTTGAACTTTTTAAATTTATCTGTTAAGATTTGTGATGTTACTTTTCTTTGAATGGCCATATCAGGATTTATAAATATAGTCCAACTTCTACTTAACAGAGCTAACAATGCTGAGCATATAAGAAGGATGCTTGAATCAGTTGATTCTGAGGGTGATACTGTGAGTATTTATTTATCCTTCTAAAAGTGTGAGTTCCTATTCAATAAGCCAAAGTCAATCCAACGACCTTCTGGTGTGTGGTTGGTTCTATGATATTGAAAATTGATTTTGATTGAATTGACTTGTAAAATTTATTTTAGAAAATAATTTATGTCTGAATGAGTTGTAAAAATGAGTTGAACAATAAATTTGAGTGTAAAAATAATGTTTGGAGGGAAAAGCTGAAAATCTTAGCTTTAATTAGAATAAACCCTAGAGGCAAACAGAATTCTCTTTGAGTACCCCTAAATGTATCAAAATCAATTTTAAATCTTCATAAATCATAATCACTTTTGACTCTCCCCAAGCTGAATCCCAACATCCACTAATTATAACAATGTAGGGTACTTAATATTAAACTTATTTGTGCGTTTTTTTTTTTTTTTGGGAAGGGGATCAAATGAGTAGATACCGGCTAAATCCTAATCCCTAATCCTGTTCCAACTTTATGTACATGATTTCTCCTTATTTGTTCTCCATATCTTGTGACTATTTTCGCAGCCTCTTCATCATGCTGCAAGAGGGGAGCATGCTGATGTAATTAGATTGTTGCTGTCTAATGGTGCATCATCCACAAAGCAAAACTTATATGGAAAGGTATAGCTTTTAAACGAATTTAAAAATATCAGTTTCTAGTCCTCAACATTTGCTAACATAATTTTTGGCAGACCCCTGCAGAGTTACCTGAACCTGGCACAGATGCAAGGAGGCTGTTTGATGCTGCTGCTACTGCCATGGAAATCTAA
Protein sequence

>MS.gene051416.t1

MAVPGRRNGLNEEDDEESNGLFGEEGLVPEESDTPPHLRDLSHAATHGDLNALRHALDNLNGSIDEPVEDGDTALHLTCLYGHFECAQLLLERGANLEATDEDGAIPLHDACAGGFINIVQLLLNRANNAEHIRRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASSTKQNLYGKTPAELPEPGTDARRLFDAAATAMEI