AlfalfaGEDB | MS.gene051416

M. sativa cultivar XinJiangDaYe / MS.gene051416

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051416.t1	XP_013468115.1	95.6	203	9	0	1	203	1	203	3.70E-59	238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051416.t1	I3SCJ7	95.6	203	9	0	1	203	1	203	2.7e-59	238.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene006087	MS.gene051416	PPI
MS.gene009621	MS.gene051416	PPI
MS.gene010343	MS.gene051416	PPI
MS.gene015160	MS.gene051416	PPI
MS.gene017270	MS.gene051416	PPI
MS.gene017995	MS.gene051416	PPI
MS.gene022254	MS.gene051416	PPI
MS.gene03411	MS.gene051416	PPI
MS.gene041075	MS.gene051416	PPI
MS.gene047623	MS.gene051416	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051416.t1	MTR_1g062770	95.567	203	9	0	1	203	1	203	1.51e-140	390
MS.gene051416.t1	MTR_3g009280	37.190	121	68	3	43	163	230	342	4.77e-12	64.3
MS.gene051416.t1	MTR_2g048680	35.000	120	71	2	64	183	94	206	6.35e-12	62.8
MS.gene051416.t1	MTR_2g048680	33.333	132	78	2	55	183	162	286	1.22e-11	62.8
MS.gene051416.t1	MTR_4g113530	28.221	163	90	3	65	200	545	707	3.32e-11	62.0
MS.gene051416.t1	MTR_8g056020	36.634	101	57	1	71	171	262	355	3.77e-11	61.6
MS.gene051416.t1	MTR_5g026800	29.861	144	94	1	40	183	14	150	7.75e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051416.t1	AT3G09890	61.809	199	74	2	1	197	1	199	1.73e-78	234
MS.gene051416.t1	AT3G09890	60.811	148	56	2	1	146	1	148	3.52e-52	165
MS.gene051416.t1	AT4G19150	30.556	144	93	1	40	183	19	155	4.24e-14	68.9
MS.gene051416.t1	AT5G40160	31.844	179	108	5	12	183	119	290	7.26e-13	66.2
MS.gene051416.t1	AT4G35450	35.537	121	70	4	43	163	224	336	1.99e-12	65.1
MS.gene051416.t1	AT4G35450	35.537	121	70	4	43	163	224	336	1.99e-12	65.1
MS.gene051416.t1	AT4G35450	35.537	121	70	4	43	163	224	336	1.99e-12	65.1
MS.gene051416.t1	AT2G17390	36.364	121	69	3	43	163	226	338	2.03e-12	65.1
MS.gene051416.t1	AT2G17390	33.333	111	67	1	73	183	222	325	2.00e-11	62.4
MS.gene051416.t1	AT2G14255	27.374	179	100	3	29	180	19	194	2.33e-12	65.5

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Find 61 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAAACTTATATGGAA+AGG	0.588451	1.1:-47358973	MS.gene051416:intron
AACCTGGCACAGATGCAAGG+AGG	0.718959	1.1:-47358861	MS.gene051416:CDS
AACGCCCTCCGCCACGCTCT+CGG	0.446028	1.1:-47360836	MS.gene051416:intron
AATGCTATATTAGATTTCCA+TGG	0.546731	1.1:+47358816	None:intergenic
ACAATGCTGAGCATATAAGA+AGG	0.607273	1.1:-47359643	MS.gene051416:CDS
ACTAGAAAGAGGAGCCAACT+TGG	0.490839	1.1:-47359847	MS.gene051416:CDS
AGAAAGAGGAGCCAACTTGG+AGG	0.623979	1.1:-47359844	MS.gene051416:CDS
AGCCTCCTTGCATCTGTGCC+AGG	0.449249	1.1:+47358859	None:intergenic
AGGAGGTACCGAGAGCGTGG+CGG	0.673529	1.1:+47360828	None:intergenic
AGGTACCGAGAGCGTGGCGG+AGG	0.501135	1.1:+47360831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAGTTGGAACAGGATTA+GGG	+	chr1.1:47360693-47360712	None:intergenic	30.0%
ATCGTATAGTTCAATTGGTT+TGG	-	chr1.1:47359285-47359304	MS.gene051416:intron	30.0%
ATGATTGCAGATAACTTGAA+TGG	-	chr1.1:47359771-47359790	MS.gene051416:intron	30.0%
ATTAGATTGTTGCTGTCTAA+TGG	-	chr1.1:47360803-47360822	MS.gene051416:intron	30.0%
CAAGATATGGAGAACAAATA+AGG	+	chr1.1:47360729-47360748	None:intergenic	30.0%
CCCTACATTGTTATAATTAG+TGG	+	chr1.1:47360588-47360607	None:intergenic	30.0%
CTATAGGGTTTAACAAAAAG+AGG	+	chr1.1:47359094-47359113	None:intergenic	30.0%
CTTCATTTGACCTGTTTATA+TGG	-	chr1.1:47359831-47359850	MS.gene051416:CDS	30.0%
GAAAAATTACTATTGTTCCG+TGG	-	chr1.1:47359377-47359396	MS.gene051416:intron	30.0%
TAGCATACTGGGAAATTATT+TGG	-	chr1.1:47359708-47359727	MS.gene051416:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	47358825	47361008	47358825	ID=MS.gene051416
chr1.1	mRNA	47358825	47361008	47358825	ID=MS.gene051416.t1;Parent=MS.gene051416
chr1.1	exon	47360837	47361008	47360837	ID=MS.gene051416.t1.exon1;Parent=MS.gene051416.t1
chr1.1	CDS	47360837	47361008	47360837	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1	exon	47359961	47360052	47359961	ID=MS.gene051416.t1.exon2;Parent=MS.gene051416.t1
chr1.1	CDS	47359961	47360052	47359961	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1	exon	47359796	47359874	47359796	ID=MS.gene051416.t1.exon3;Parent=MS.gene051416.t1
chr1.1	CDS	47359796	47359874	47359796	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1	exon	47359610	47359704	47359610	ID=MS.gene051416.t1.exon4;Parent=MS.gene051416.t1
chr1.1	CDS	47359610	47359704	47359610	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1	exon	47358974	47359069	47358974	ID=MS.gene051416.t1.exon5;Parent=MS.gene051416.t1
chr1.1	CDS	47358974	47359069	47358974	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1
chr1.1	exon	47358825	47358902	47358825	ID=MS.gene051416.t1.exon6;Parent=MS.gene051416.t1
chr1.1	CDS	47358825	47358902	47358825	ID=cds.MS.gene051416.t1;Parent=MS.gene051416.t1

Gene Sequence

>MS.gene051416

ATGGCGGTTCCCGGAAGACGCAATGGTTTGAACGAAGAAGACGATGAAGAATCGAATGGTCTTTTCGGTGAAGAAGGTCTTGTTCCTGAAGAATCTGATACTCCTCCTCATCTTCGTGACCTCTCCCATGCCGCTACACACGGTGACCTCAACGCCCTCCGCCACGCTCTCGGTACCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAACTGCACAAATTTTTGTCTCTGTTAATTCAATATTTACCTCTTTTTGTTAAACCCTATAGCTACTTCAAAATATATCAATCTAAAACCCTAATTATTATTTTTAATCTTTTAGATAAATTGTTTGATTTGTATGGCATTTGATTCTGATACAAGTCGTTGTTTCTGTGCGTTGATTATAATTTTAATTTGATGAGGATTGGGATTATTTGCAGAGAAAACTTTATAATTACATCGTATAGTTCAATTGGTTTGGATATTTTGTGTGGTTTGTTCGATGTTTCGTCCAATGTTGTATAGCGGCTGTATAGTGAAGTGGAATTTTGAAAAATTACTATTGTTCCGTGGTATACTAAATGTTGTCAAATAGTATCAGTTATAGCTCTGTTGCATAGCGAAATTTGAACAAACTTTTATATATTTTGAAATCTGTGATTCAGCCATTGCTCTGTTGCATTGCGGAATTTGAACTAACTTTTATATTTCGCAATCTGTGATTGACACTGCTGGTTTCGTCTCAGTTCAATCATTTCAAAACAATTGAAGCATGACCAAAAAACCTCGTTGATTTGATGTCCGATTTGATTTTTAAAACATTGAATTATATATACAATAGTTCTCGATTGTGTTATATGTGAACTAAAAGACATGCTAACTAGCATACTGGGAAATTATTTGGTGTTCTTTCTTAATTCTTATGATGCTTATCCCTGTGTTGCATGATTGCAGATAACTTGAATGGTAGTATTGATGAACCGGTGGAGGATGGGGATACTGCTCTTCATTTGACCTGTTTATATGGTCATTTCGAATGCGCTCAGGTTTGATATCATTGCTCATTCATTCTTTTTTATGCTTTTAATCTGAAACATGTCGTGGATTATTGATCTTGATCAATGAATTGCAGCTGCTACTAGAAAGAGGAGCCAACTTGGAGGCTACAGATGAAGATGGGGCAATTCCTTTACACGATGCTTGTGCAGGAGGTAGTTTAAATTATCATATTTTAATTGTTGAACTTTTTAAATTTATCTGTTAAGATTTGTGATGTTACTTTTCTTTGAATGGCCATATCAGGATTTATAAATATAGTCCAACTTCTACTTAACAGAGCTAACAATGCTGAGCATATAAGAAGGATGCTTGAATCAGTTGATTCTGAGGGTGATACTGTGAGTATTTATTTATCCTTCTAAAAGTGTGAGTTCCTATTCAATAAGCCAAAGTCAATCCAACGACCTTCTGGTGTGTGGTTGGTTCTATGATATTGAAAATTGATTTTGATTGAATTGACTTGTAAAATTTATTTTAGAAAATAATTTATGTCTGAATGAGTTGTAAAAATGAGTTGAACAATAAATTTGAGTGTAAAAATAATGTTTGGAGGGAAAAGCTGAAAATCTTAGCTTTAATTAGAATAAACCCTAGAGGCAAACAGAATTCTCTTTGAGTACCCCTAAATGTATCAAAATCAATTTTAAATCTTCATAAATCATAATCACTTTTGACTCTCCCCAAGCTGAATCCCAACATCCACTAATTATAACAATGTAGGGTACTTAATATTAAACTTATTTGTGCGTTTTTTTTTTTTTTTGGGAAGGGGATCAAATGAGTAGATACCGGCTAAATCCTAATCCCTAATCCTGTTCCAACTTTATGTACATGATTTCTCCTTATTTGTTCTCCATATCTTGTGACTATTTTCGCAGCCTCTTCATCATGCTGCAAGAGGGGAGCATGCTGATGTAATTAGATTGTTGCTGTCTAATGGTGCATCATCCACAAAGCAAAACTTATATGGAAAGGTATAGCTTTTAAACGAATTTAAAAATATCAGTTTCTAGTCCTCAACATTTGCTAACATAATTTTTGGCAGACCCCTGCAGAGTTACCTGAACCTGGCACAGATGCAAGGAGGCTGTTTGATGCTGCTGCTACTGCCATGGAAATCTAA

Protein sequence

>MS.gene051416.t1

MAVPGRRNGLNEEDDEESNGLFGEEGLVPEESDTPPHLRDLSHAATHGDLNALRHALDNLNGSIDEPVEDGDTALHLTCLYGHFECAQLLLERGANLEATDEDGAIPLHDACAGGFINIVQLLLNRANNAEHIRRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASSTKQNLYGKTPAELPEPGTDARRLFDAAATAMEI