Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009799.t1 | XP_024640995.1 | 96.2 | 426 | 16 | 0 | 1 | 426 | 1 | 426 | 3.70E-242 | 847 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009799.t1 | Q9FH50 | 60.0 | 413 | 139 | 3 | 15 | 426 | 15 | 402 | 1.4e-141 | 504.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009799.t1 | A0A396HTC3 | 96.2 | 426 | 16 | 0 | 1 | 426 | 1 | 426 | 2.7e-242 | 847.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009799 | MS.gene060083 | PPI |
| MS.gene009799 | MS.gene59283 | PPI |
| MS.gene009799 | MS.gene80300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009799.t1 | MTR_5g072520 | 96.959 | 296 | 9 | 0 | 130 | 425 | 1 | 296 | 0.0 | 613 |
| MS.gene009799.t1 | MTR_2g088390 | 45.355 | 366 | 176 | 6 | 53 | 417 | 95 | 437 | 3.15e-104 | 316 |
| MS.gene009799.t1 | MTR_2g067610 | 46.176 | 340 | 161 | 4 | 78 | 417 | 2 | 319 | 2.12e-102 | 308 |
| MS.gene009799.t1 | MTR_6g059930 | 43.440 | 343 | 168 | 3 | 87 | 426 | 100 | 419 | 6.55e-98 | 299 |
| MS.gene009799.t1 | MTR_6g059930 | 43.440 | 343 | 168 | 3 | 87 | 426 | 132 | 451 | 2.84e-97 | 298 |
| MS.gene009799.t1 | MTR_2g088750 | 32.609 | 322 | 168 | 4 | 95 | 416 | 55 | 327 | 2.02e-52 | 179 |
| MS.gene009799.t1 | MTR_2g088750 | 26.207 | 145 | 105 | 1 | 259 | 403 | 29 | 171 | 1.48e-13 | 72.0 |
| MS.gene009799.t1 | MTR_1g054885 | 55.844 | 77 | 32 | 2 | 346 | 421 | 2 | 77 | 3.37e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009799.t1 | AT5G61930 | 60.048 | 413 | 139 | 3 | 15 | 426 | 15 | 402 | 1.09e-177 | 502 |
| MS.gene009799.t1 | AT5G61930 | 60.048 | 413 | 139 | 3 | 15 | 426 | 15 | 402 | 1.09e-177 | 502 |
| MS.gene009799.t1 | AT1G64810 | 40.052 | 382 | 209 | 6 | 45 | 426 | 75 | 436 | 3.13e-97 | 298 |
| MS.gene009799.t1 | AT1G64810 | 40.052 | 382 | 209 | 6 | 45 | 426 | 99 | 460 | 7.89e-97 | 298 |
| MS.gene009799.t1 | AT5G57930 | 42.192 | 365 | 188 | 5 | 53 | 417 | 89 | 430 | 2.11e-94 | 291 |
| MS.gene009799.t1 | AT5G57930 | 42.192 | 365 | 188 | 5 | 53 | 417 | 92 | 433 | 2.21e-94 | 291 |
| MS.gene009799.t1 | AT3G21740 | 31.875 | 320 | 161 | 7 | 95 | 411 | 55 | 320 | 3.23e-45 | 160 |
| MS.gene009799.t1 | AT3G21740 | 27.329 | 161 | 116 | 1 | 246 | 405 | 13 | 173 | 1.75e-13 | 71.6 |
Find 119 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACATGCCAGACAAAATT+TGG | 0.212731 | 5.3:+57218663 | None:intergenic |
| TCGTACAAATGAAAGCATTT+TGG | 0.230581 | 5.3:+57219236 | None:intergenic |
| AAGATGAAAGGAACAAATTA+AGG | 0.231802 | 5.3:-57218899 | MS.gene009799:CDS |
| GCTAGAGGGTTTCTACTTTC+CGG | 0.261747 | 5.3:-57219825 | MS.gene009799:CDS |
| AACAATCTCAAGAGATATTA+TGG | 0.273139 | 5.3:-57218615 | MS.gene009799:CDS |
| AGGTCAACTTCATCTCGTTC+TGG | 0.313030 | 5.3:+57218501 | None:intergenic |
| TAGACTTTGGACCTTCTCTA+AGG | 0.315242 | 5.3:+57218959 | None:intergenic |
| TGGATATTGTCCCGAGGTTC+AGG | 0.317504 | 5.3:-57218790 | MS.gene009799:CDS |
| TGGAACTCTGTGTGCATGCT+GGG | 0.319122 | 5.3:-57218575 | MS.gene009799:CDS |
| GTGGAACTCTGTGTGCATGC+TGG | 0.320978 | 5.3:-57218576 | MS.gene009799:CDS |
| ATATAGGACGAATCAGTTAA+AGG | 0.321577 | 5.3:+57218993 | None:intergenic |
| GGGTTGGGTACGTCGGAGTA+TGG | 0.330870 | 5.3:+57220023 | None:intergenic |
| CTTGCAATCAAAACTTTCAT+TGG | 0.334453 | 5.3:+57219963 | None:intergenic |
| GGCGCAGCCGTGTAGAGTTC+TGG | 0.336878 | 5.3:-57219913 | MS.gene009799:CDS |
| GCAACTAGTTCGAGTTATTC+CGG | 0.349413 | 5.3:-57219796 | MS.gene009799:CDS |
| TGGATGTGAGGCGGTGGGAG+AGG | 0.352774 | 5.3:+57220102 | None:intergenic |
| AGAGGGTGGATGTGAGGCGG+TGG | 0.374028 | 5.3:+57220096 | None:intergenic |
| GCACTCCGCAGCCAACTCTT+TGG | 0.384257 | 5.3:+57219305 | None:intergenic |
| GCATACTCGCAGCGCAAAAC+CGG | 0.389839 | 5.3:+57219777 | None:intergenic |
| GGCGGTGGGAGAGGCGGTTA+AGG | 0.397324 | 5.3:+57220111 | None:intergenic |
| GGAGAACAAAATAAGTCATA+TGG | 0.409590 | 5.3:-57218934 | MS.gene009799:CDS |
| CGAGGTTCAGGTTGGTCCTA+AGG | 0.411197 | 5.3:-57218778 | MS.gene009799:CDS |
| GGTCAACTTCATCTCGTTCT+GGG | 0.412824 | 5.3:+57218502 | None:intergenic |
| TCATGGTTTGAGATGATATC+AGG | 0.413415 | 5.3:-57218852 | MS.gene009799:CDS |
| CTTCCTTCGATGCAATATAC+AGG | 0.414308 | 5.3:+57219086 | None:intergenic |
| TATAGGACGAATCAGTTAAA+GGG | 0.423745 | 5.3:+57218994 | None:intergenic |
| TGGCATGTTGAGGATCTAAA+TGG | 0.429748 | 5.3:-57218651 | MS.gene009799:CDS |
| ATCATGCTCTTATATTGATC+AGG | 0.430628 | 5.3:+57218543 | None:intergenic |
| GGGAATGCGTTGTCGGGATC+AGG | 0.434612 | 5.3:+57220044 | None:intergenic |
| CTCTTATATTGATCAGGAAC+TGG | 0.436806 | 5.3:+57218549 | None:intergenic |
| GGAGTATGGGAATGCGTTGT+CGG | 0.436867 | 5.3:+57220037 | None:intergenic |
| TGAGGTTCACATTGGTTATG+TGG | 0.445542 | 5.3:-57219354 | MS.gene009799:CDS |
| TTGTATACAAAGTTCAACTA+TGG | 0.445577 | 5.3:+57219154 | None:intergenic |
| GTGCAACTCATGTTTGGAAA+AGG | 0.445801 | 5.3:-57219286 | MS.gene009799:CDS |
| TTGAGATTGTTATTCAGAGC+AGG | 0.449826 | 5.3:+57218627 | None:intergenic |
| CTGGAAGAGGCACCTGAGAA+TGG | 0.451862 | 5.3:-57219894 | MS.gene009799:CDS |
| GAGTATGGGAATGCGTTGTC+GGG | 0.452168 | 5.3:+57220038 | None:intergenic |
| CTCTCGTCATGCCCAACTCT+TGG | 0.453362 | 5.3:+57219200 | None:intergenic |
| TGCGGAGTGCAACTCATGTT+TGG | 0.457274 | 5.3:-57219292 | MS.gene009799:CDS |
| CATGAAATTCGAACATGTAC+TGG | 0.464615 | 5.3:-57219329 | MS.gene009799:CDS |
| TGCAACTCATGTTTGGAAAA+GGG | 0.465316 | 5.3:-57219285 | MS.gene009799:CDS |
| ATTCTCAACTTATGTCCCTT+AGG | 0.465506 | 5.3:+57218762 | None:intergenic |
| GAGGGTGGATGTGAGGCGGT+GGG | 0.465523 | 5.3:+57220097 | None:intergenic |
| GGCACAAGCAACCCATTCTC+AGG | 0.469315 | 5.3:+57219882 | None:intergenic |
| TCGAACTAGTTGCTTCAAAC+CGG | 0.485922 | 5.3:+57219806 | None:intergenic |
| AGCGGAGAGAGAAGCACGAA+AGG | 0.489019 | 5.3:-57219934 | MS.gene009799:CDS |
| AGATGAAAGGAACAAATTAA+GGG | 0.494511 | 5.3:-57218898 | MS.gene009799:CDS |
| CTCGCAACTTCTACAAGCTC+AGG | 0.504515 | 5.3:+57219861 | None:intergenic |
| GTATACATACATTGGACTCA+TGG | 0.507148 | 5.3:-57218869 | MS.gene009799:CDS |
| CAACTCTTGGCTTGCCAACA+CGG | 0.508397 | 5.3:+57219213 | None:intergenic |
| TTGTCGGGATCAGGTGAGTC+GGG | 0.509945 | 5.3:+57220053 | None:intergenic |
| CGTGTTGGCAAGCCAAGAGT+TGG | 0.509970 | 5.3:-57219212 | MS.gene009799:CDS |
| ACTTTCATTGGCGTCACGTA+GGG | 0.513231 | 5.3:+57219975 | None:intergenic |
| TGGTAAGGCTCCTGCTGTTG+TGG | 0.515817 | 5.3:-57218595 | MS.gene009799:CDS |
| GGTTGGGTACGTCGGAGTAT+GGG | 0.517051 | 5.3:+57220024 | None:intergenic |
| CTCGGAATGGTTTACATGCA+TGG | 0.519540 | 5.3:-57218716 | MS.gene009799:CDS |
| GGGAGAGGCGGTTAAGGAGA+GGG | 0.520414 | 5.3:+57220117 | None:intergenic |
| TTAGGACCAACCTGAACCTC+GGG | 0.522461 | 5.3:+57218780 | None:intergenic |
| TGGAAGAGGCACCTGAGAAT+GGG | 0.526375 | 5.3:-57219893 | MS.gene009799:CDS |
| GGCAACATTAGATGATATTG+TGG | 0.532194 | 5.3:-57218688 | MS.gene009799:CDS |
| GGATTTAAGTATACATACAT+TGG | 0.535863 | 5.3:-57218877 | MS.gene009799:CDS |
| GTGTTGGCAAGCCAAGAGTT+GGG | 0.538886 | 5.3:-57219211 | MS.gene009799:CDS |
| GCAACTCATGTTTGGAAAAG+GGG | 0.543293 | 5.3:-57219284 | MS.gene009799:CDS |
| ATCAGGTGCAAAGAAGATCA+TGG | 0.544243 | 5.3:-57218835 | MS.gene009799:CDS |
| ATGTGAGGCGGTGGGAGAGG+CGG | 0.549548 | 5.3:+57220105 | None:intergenic |
| ATACAAAGTTCAACTATGGC+AGG | 0.552159 | 5.3:+57219158 | None:intergenic |
| AAGGGGAGGTGTTCAAGATG+TGG | 0.556175 | 5.3:-57219267 | MS.gene009799:CDS |
| TGGGAGAGGCGGTTAAGGAG+AGG | 0.556232 | 5.3:+57220116 | None:intergenic |
| GGGACAAGTGTCGGATGTGA+AGG | 0.560421 | 5.3:+57220073 | None:intergenic |
| TGAGATTGTTATTCAGAGCA+GGG | 0.561964 | 5.3:+57218628 | None:intergenic |
| GAGGTTCAGGTTGGTCCTAA+GGG | 0.564208 | 5.3:-57218777 | MS.gene009799:CDS |
| AATTTCATTATCTTCCGCAA+CGG | 0.564632 | 5.3:+57219046 | None:intergenic |
| CATGTACTGGACCAAAGAGT+TGG | 0.567295 | 5.3:-57219316 | MS.gene009799:CDS |
| ATCAGTTGAGTAAAGATGAA+AGG | 0.568909 | 5.3:-57218911 | MS.gene009799:CDS |
| GAGGTTCACATTGGTTATGT+GGG | 0.570250 | 5.3:-57219353 | MS.gene009799:CDS |
| AGAAGAGTTTATCAAGCTAG+AGG | 0.571116 | 5.3:-57219840 | MS.gene009799:CDS |
| AGGAGAGGGTGGATGTGAGG+CGG | 0.571350 | 5.3:+57220093 | None:intergenic |
| TTTGATTGCAAGGGCGAAAG+CGG | 0.572968 | 5.3:-57219952 | MS.gene009799:CDS |
| CTTAGGACCAACCTGAACCT+CGG | 0.574328 | 5.3:+57218779 | None:intergenic |
| AAGTATGTTGTGAATACTTG+TGG | 0.576332 | 5.3:-57218810 | MS.gene009799:CDS |
| GAAGAGTTTATCAAGCTAGA+GGG | 0.576860 | 5.3:-57219839 | MS.gene009799:CDS |
| GATGATTGCGGTGGTGCGCA+TGG | 0.577947 | 5.3:+57220148 | None:intergenic |
| TCTCAAGAGATATTATGGTA+AGG | 0.578916 | 5.3:-57218610 | MS.gene009799:CDS |
| AAACCTGTATATTGCATCGA+AGG | 0.580393 | 5.3:-57219089 | MS.gene009799:CDS |
| TCGGCTAGGGTTGGGTACGT+CGG | 0.581279 | 5.3:+57220016 | None:intergenic |
| ACACAGAGTTCCACAACAGC+AGG | 0.583614 | 5.3:+57218585 | None:intergenic |
| AGGTGAGTCGGGACAAGTGT+CGG | 0.586550 | 5.3:+57220064 | None:intergenic |
| AGACTTTGGACCTTCTCTAA+GGG | 0.591995 | 5.3:+57218960 | None:intergenic |
| AGTTGAACTTTGTATACAAG+CGG | 0.594321 | 5.3:-57219150 | MS.gene009799:CDS |
| GTTGAACTTTGTATACAAGC+GGG | 0.594853 | 5.3:-57219149 | MS.gene009799:CDS |
| AACTTTCATTGGCGTCACGT+AGG | 0.595944 | 5.3:+57219974 | None:intergenic |
| TCAAAGCATCAGTCTCGGAA+TGG | 0.596875 | 5.3:-57218729 | MS.gene009799:CDS |
| GTCGGATGTGAAGGAGAGGG+TGG | 0.597060 | 5.3:+57220082 | None:intergenic |
| TGAAGGAGAGGGTGGATGTG+AGG | 0.597062 | 5.3:+57220090 | None:intergenic |
| GTTGTCGGGATCAGGTGAGT+CGG | 0.597063 | 5.3:+57220052 | None:intergenic |
| GCAACATTAGATGATATTGT+GGG | 0.597987 | 5.3:-57218687 | MS.gene009799:CDS |
| TATTGTCCCGAGGTTCAGGT+TGG | 0.599496 | 5.3:-57218786 | MS.gene009799:CDS |
| AGGGAGTTGAGAGATGATTG+CGG | 0.601953 | 5.3:+57220136 | None:intergenic |
| AAGTTGACCTTGTTGCCTGA+AGG | 0.604185 | 5.3:-57218488 | None:intergenic |
| GGAACTCTGTGTGCATGCTG+GGG | 0.604232 | 5.3:-57218574 | MS.gene009799:CDS |
| GAGCATGATGAGATTAGATG+TGG | 0.604548 | 5.3:-57218529 | MS.gene009799:CDS |
| GTCAACTTCATCTCGTTCTG+GGG | 0.607681 | 5.3:+57218503 | None:intergenic |
| GTTAAAAGAGCCCTTAGAGA+AGG | 0.610085 | 5.3:-57218970 | MS.gene009799:CDS |
| GCCGTGTAGAGTTCTGGAAG+AGG | 0.610934 | 5.3:-57219907 | MS.gene009799:CDS |
| CAAGAGTTGGGCATGACGAG+AGG | 0.611959 | 5.3:-57219199 | MS.gene009799:CDS |
| AGGCTTCAAAGCATCAGTCT+CGG | 0.613836 | 5.3:-57218734 | MS.gene009799:CDS |
| GTATTTCCCTTCAGGCAACA+AGG | 0.614585 | 5.3:+57218481 | None:intergenic |
| ACATAAGTTGAGAATGTGCA+AGG | 0.624521 | 5.3:-57218754 | MS.gene009799:CDS |
| TTTCATTTGTACGACCGTGT+TGG | 0.624858 | 5.3:-57219227 | MS.gene009799:CDS |
| TGGTTTACATGCATGGCAAG+AGG | 0.626947 | 5.3:-57218709 | MS.gene009799:CDS |
| AAGTGTCGGATGTGAAGGAG+AGG | 0.630432 | 5.3:+57220078 | None:intergenic |
| CTGGACCAAAGAGTTGGCTG+CGG | 0.639041 | 5.3:-57219310 | MS.gene009799:CDS |
| TCAACTATGGCAGGAATACG+TGG | 0.652807 | 5.3:+57219167 | None:intergenic |
| AGAGAAGGTCCAAAGTCTAG+TGG | 0.660592 | 5.3:-57218955 | MS.gene009799:CDS |
| ACTCATGTTTGGAAAAGGGG+AGG | 0.669405 | 5.3:-57219281 | MS.gene009799:CDS |
| TACTTGTGGATATTGTCCCG+AGG | 0.672326 | 5.3:-57218796 | MS.gene009799:CDS |
| AGTGTCGGATGTGAAGGAGA+GGG | 0.685621 | 5.3:+57220079 | None:intergenic |
| GCCTCTTCCAGAACTCTACA+CGG | 0.688795 | 5.3:+57219906 | None:intergenic |
| GAGTTGAGAGATGATTGCGG+TGG | 0.777552 | 5.3:+57220139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTAAAAAAAATAGAT+TGG | - | chr5.3:57219045-57219064 | MS.gene009799:CDS | 10.0% |
| !!! | TTTTTAAGAAAAATGACATA+TGG | + | chr5.3:57219037-57219056 | None:intergenic | 15.0% |
| !! | TTAATTTAAGAATCACACAA+AGG | + | chr5.3:57219096-57219115 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTCTGATTTTATT+CGG | + | chr5.3:57218643-57218662 | None:intergenic | 20.0% |
| ! | AACAATCTCAAGAGATATTA+TGG | - | chr5.3:57220022-57220041 | MS.gene009799:CDS | 25.0% |
| ! | AAGATGAAAGGAACAAATTA+AGG | - | chr5.3:57219738-57219757 | MS.gene009799:intron | 25.0% |
| ! | AGATGAAAGGAACAAATTAA+GGG | - | chr5.3:57219739-57219758 | MS.gene009799:intron | 25.0% |
| ! | ATGATGGTTAAGAATTTAAG+TGG | - | chr5.3:57218944-57218963 | MS.gene009799:CDS | 25.0% |
| ! | GGATTTAAGTATACATACAT+TGG | - | chr5.3:57219760-57219779 | MS.gene009799:intron | 25.0% |
| ! | TTGTATACAAAGTTCAACTA+TGG | + | chr5.3:57219486-57219505 | None:intergenic | 25.0% |
| !! | TTTGAAGTAGAAAATGATGA+TGG | - | chr5.3:57218928-57218947 | MS.gene009799:CDS | 25.0% |
| !!! | AATGAAAGTTTTGATTGCAA+GGG | - | chr5.3:57218676-57218695 | MS.gene009799:CDS | 25.0% |
| !!! | GATTATTGTGTCATTGATTT+TGG | - | chr5.3:57219165-57219184 | MS.gene009799:CDS | 25.0% |
| !!! | TTTAATGGTTTTGACTTATC+AGG | - | chr5.3:57219252-57219271 | MS.gene009799:CDS | 25.0% |
| !!! | TTTTGGCTTTCTAATGTTTT+TGG | - | chr5.3:57219182-57219201 | MS.gene009799:CDS | 25.0% |
| AAGTATGTTGTGAATACTTG+TGG | - | chr5.3:57219827-57219846 | MS.gene009799:CDS | 30.0% | |
| AATTTCATTATCTTCCGCAA+CGG | + | chr5.3:57219594-57219613 | None:intergenic | 30.0% | |
| AGTTGAACTTTGTATACAAG+CGG | - | chr5.3:57219487-57219506 | MS.gene009799:intron | 30.0% | |
| ATATAGGACGAATCAGTTAA+AGG | + | chr5.3:57219647-57219666 | None:intergenic | 30.0% | |
| ATCAGTTGAGTAAAGATGAA+AGG | - | chr5.3:57219726-57219745 | MS.gene009799:intron | 30.0% | |
| ATCATGCTCTTATATTGATC+AGG | + | chr5.3:57220097-57220116 | None:intergenic | 30.0% | |
| CTTGCAATCAAAACTTTCAT+TGG | + | chr5.3:57218677-57218696 | None:intergenic | 30.0% | |
| GCAACATTAGATGATATTGT+GGG | - | chr5.3:57219950-57219969 | MS.gene009799:CDS | 30.0% | |
| GGAGAACAAAATAAGTCATA+TGG | - | chr5.3:57219703-57219722 | MS.gene009799:intron | 30.0% | |
| TATAGGACGAATCAGTTAAA+GGG | + | chr5.3:57219646-57219665 | None:intergenic | 30.0% | |
| TCTCAAGAGATATTATGGTA+AGG | - | chr5.3:57220027-57220046 | MS.gene009799:CDS | 30.0% | |
| TGAAGTAGATCAATTTGCAA+TGG | - | chr5.3:57219208-57219227 | MS.gene009799:CDS | 30.0% | |
| TTAAAAAATTTCCCACGAAG+AGG | - | chr5.3:57219519-57219538 | MS.gene009799:intron | 30.0% | |
| ! | TAAGGGCTCTTTTAACATAT+AGG | + | chr5.3:57219663-57219682 | None:intergenic | 30.0% |
| ! | TTTCTGATTTTATTCGGCTA+GGG | + | chr5.3:57218637-57218656 | None:intergenic | 30.0% |
| ! | TTTTGTAATGAGGTTCACAT+TGG | - | chr5.3:57219275-57219294 | MS.gene009799:CDS | 30.0% |
| !! | ACTTATCAGGTTTTGTAATG+AGG | - | chr5.3:57219265-57219284 | MS.gene009799:CDS | 30.0% |
| !! | CTTGTTGGATTCACTTTTAA+TGG | - | chr5.3:57219237-57219256 | MS.gene009799:CDS | 30.0% |
| !!! | ATAGATTGGCTCGTTTTAAA+AGG | - | chr5.3:57219059-57219078 | MS.gene009799:CDS | 30.0% |
| !!! | CAATGAAAGTTTTGATTGCA+AGG | - | chr5.3:57218675-57218694 | MS.gene009799:CDS | 30.0% |
| !!! | CGTACAAATGAAAGCATTTT+GGG | + | chr5.3:57219403-57219422 | None:intergenic | 30.0% |
| !!! | TCGTACAAATGAAAGCATTT+TGG | + | chr5.3:57219404-57219423 | None:intergenic | 30.0% |
| !!! | TCTTCGTGGGAAATTTTTTA+AGG | + | chr5.3:57219520-57219539 | None:intergenic | 30.0% |
| AAACCTGTATATTGCATCGA+AGG | - | chr5.3:57219548-57219567 | MS.gene009799:intron | 35.0% | |
| AGAAGAGTTTATCAAGCTAG+AGG | - | chr5.3:57218797-57218816 | MS.gene009799:CDS | 35.0% | |
| ATACAAAGTTCAACTATGGC+AGG | + | chr5.3:57219482-57219501 | None:intergenic | 35.0% | |
| ATTCTCAACTTATGTCCCTT+AGG | + | chr5.3:57219878-57219897 | None:intergenic | 35.0% | |
| CATGAAATTCGAACATGTAC+TGG | - | chr5.3:57219308-57219327 | MS.gene009799:CDS | 35.0% | |
| CTCTTATATTGATCAGGAAC+TGG | + | chr5.3:57220091-57220110 | None:intergenic | 35.0% | |
| GAAGAGTTTATCAAGCTAGA+GGG | - | chr5.3:57218798-57218817 | MS.gene009799:CDS | 35.0% | |
| GGCAACATTAGATGATATTG+TGG | - | chr5.3:57219949-57219968 | MS.gene009799:CDS | 35.0% | |
| GTATACATACATTGGACTCA+TGG | - | chr5.3:57219768-57219787 | MS.gene009799:intron | 35.0% | |
| GTTGAACTTTGTATACAAGC+GGG | - | chr5.3:57219488-57219507 | MS.gene009799:intron | 35.0% | |
| TCAACATGCCAGACAAAATT+TGG | + | chr5.3:57219977-57219996 | None:intergenic | 35.0% | |
| TGCAACTCATGTTTGGAAAA+GGG | - | chr5.3:57219352-57219371 | MS.gene009799:CDS | 35.0% | |
| ! | AAATTTTGTCTGGCATGTTG+AGG | - | chr5.3:57219976-57219995 | MS.gene009799:CDS | 35.0% |
| ! | ACATAAGTTGAGAATGTGCA+AGG | - | chr5.3:57219883-57219902 | MS.gene009799:CDS | 35.0% |
| ! | ATGTAAGATTGCACTGATGT+GGG | - | chr5.3:57218977-57218996 | MS.gene009799:CDS | 35.0% |
| ! | CTTTCTGATTTTATTCGGCT+AGG | + | chr5.3:57218638-57218657 | None:intergenic | 35.0% |
| ! | GAATCACACAAAGGCATATT+TGG | + | chr5.3:57219087-57219106 | None:intergenic | 35.0% |
| ! | TCATGGTTTGAGATGATATC+AGG | - | chr5.3:57219785-57219804 | MS.gene009799:CDS | 35.0% |
| ! | TGAGATTGTTATTCAGAGCA+GGG | + | chr5.3:57220012-57220031 | None:intergenic | 35.0% |
| ! | TTGAGATTGTTATTCAGAGC+AGG | + | chr5.3:57220013-57220032 | None:intergenic | 35.0% |
| ! | TTTTGTTCTCCACTAGACTT+TGG | + | chr5.3:57219694-57219713 | None:intergenic | 35.0% |
| !! | GCAGCATTTGTTTTTCTAAG+TGG | - | chr5.3:57219140-57219159 | MS.gene009799:CDS | 35.0% |
| AGACTTTGGACCTTCTCTAA+GGG | + | chr5.3:57219680-57219699 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGAAGATCA+TGG | - | chr5.3:57219802-57219821 | MS.gene009799:CDS | 40.0% | |
| CTTCCTTCGATGCAATATAC+AGG | + | chr5.3:57219554-57219573 | None:intergenic | 40.0% | |
| GAGCATGATGAGATTAGATG+TGG | - | chr5.3:57220108-57220127 | MS.gene009799:CDS | 40.0% | |
| GCAACTCATGTTTGGAAAAG+GGG | - | chr5.3:57219353-57219372 | MS.gene009799:CDS | 40.0% | |
| GTGCAACTCATGTTTGGAAA+AGG | - | chr5.3:57219351-57219370 | MS.gene009799:CDS | 40.0% | |
| GTTAAAAGAGCCCTTAGAGA+AGG | - | chr5.3:57219667-57219686 | MS.gene009799:intron | 40.0% | |
| TAGACTTTGGACCTTCTCTA+AGG | + | chr5.3:57219681-57219700 | None:intergenic | 40.0% | |
| TCGAACTAGTTGCTTCAAAC+CGG | + | chr5.3:57218834-57218853 | None:intergenic | 40.0% | |
| TGGCATGTTGAGGATCTAAA+TGG | - | chr5.3:57219986-57220005 | MS.gene009799:CDS | 40.0% | |
| TTTCATTTGTACGACCGTGT+TGG | - | chr5.3:57219410-57219429 | MS.gene009799:intron | 40.0% | |
| ! | CATGTAAGATTGCACTGATG+TGG | - | chr5.3:57218976-57218995 | MS.gene009799:CDS | 40.0% |
| ! | GAGGTTCACATTGGTTATGT+GGG | - | chr5.3:57219284-57219303 | MS.gene009799:CDS | 40.0% |
| ! | GATTTTATTCGGCTAGGGTT+GGG | + | chr5.3:57218632-57218651 | None:intergenic | 40.0% |
| ! | GCAACTAGTTCGAGTTATTC+CGG | - | chr5.3:57218841-57218860 | MS.gene009799:CDS | 40.0% |
| ! | TGAGGTTCACATTGGTTATG+TGG | - | chr5.3:57219283-57219302 | MS.gene009799:CDS | 40.0% |
| ! | TGATTTTATTCGGCTAGGGT+TGG | + | chr5.3:57218633-57218652 | None:intergenic | 40.0% |
| ! | TGCAGATTTTGAATCCGTTG+CGG | - | chr5.3:57219577-57219596 | MS.gene009799:intron | 40.0% |
| ! | TTGCAATGGCTTGTACTTGT+TGG | - | chr5.3:57219222-57219241 | MS.gene009799:CDS | 40.0% |
| ! | TTGTGGGTCCAAATTTTGTC+TGG | - | chr5.3:57219966-57219985 | MS.gene009799:CDS | 40.0% |
| AACTTTCATTGGCGTCACGT+AGG | + | chr5.3:57218666-57218685 | None:intergenic | 45.0% | |
| ACTCATGTTTGGAAAAGGGG+AGG | - | chr5.3:57219356-57219375 | MS.gene009799:CDS | 45.0% | |
| ACTTTCATTGGCGTCACGTA+GGG | + | chr5.3:57218665-57218684 | None:intergenic | 45.0% | |
| AGAGAAGGTCCAAAGTCTAG+TGG | - | chr5.3:57219682-57219701 | MS.gene009799:intron | 45.0% | |
| AGGGAGTTGAGAGATGATTG+CGG | + | chr5.3:57218504-57218523 | None:intergenic | 45.0% | |
| AGGTCAACTTCATCTCGTTC+TGG | + | chr5.3:57220139-57220158 | None:intergenic | 45.0% | |
| CATGTACTGGACCAAAGAGT+TGG | - | chr5.3:57219321-57219340 | MS.gene009799:CDS | 45.0% | |
| CTCGGAATGGTTTACATGCA+TGG | - | chr5.3:57219921-57219940 | MS.gene009799:CDS | 45.0% | |
| GCTAGAGGGTTTCTACTTTC+CGG | - | chr5.3:57218812-57218831 | MS.gene009799:CDS | 45.0% | |
| GGTCAACTTCATCTCGTTCT+GGG | + | chr5.3:57220138-57220157 | None:intergenic | 45.0% | |
| GTCAACTTCATCTCGTTCTG+GGG | + | chr5.3:57220137-57220156 | None:intergenic | 45.0% | |
| TACTTGTGGATATTGTCCCG+AGG | - | chr5.3:57219841-57219860 | MS.gene009799:CDS | 45.0% | |
| TCAACTATGGCAGGAATACG+TGG | + | chr5.3:57219473-57219492 | None:intergenic | 45.0% | |
| TGGTTTACATGCATGGCAAG+AGG | - | chr5.3:57219928-57219947 | MS.gene009799:CDS | 45.0% | |
| TTTGATTGCAAGGGCGAAAG+CGG | - | chr5.3:57218685-57218704 | MS.gene009799:CDS | 45.0% | |
| ! | AGGCTTCAAAGCATCAGTCT+CGG | - | chr5.3:57219903-57219922 | MS.gene009799:CDS | 45.0% |
| ! | TCAAAGCATCAGTCTCGGAA+TGG | - | chr5.3:57219908-57219927 | MS.gene009799:CDS | 45.0% |
| !!! | AGGTTTTGTTCTCCTCTTCG+TGG | + | chr5.3:57219534-57219553 | None:intergenic | 45.0% |
| !!! | GGTTTTGTTCTCCTCTTCGT+GGG | + | chr5.3:57219533-57219552 | None:intergenic | 45.0% |
| ACACAGAGTTCCACAACAGC+AGG | + | chr5.3:57220055-57220074 | None:intergenic | 50.0% | |
| CTCGCAACTTCTACAAGCTC+AGG | + | chr5.3:57218779-57218798 | None:intergenic | 50.0% | |
| CTTAGGACCAACCTGAACCT+CGG | + | chr5.3:57219861-57219880 | None:intergenic | 50.0% | |
| GAGTATGGGAATGCGTTGTC+GGG | + | chr5.3:57218602-57218621 | None:intergenic | 50.0% | |
| GAGTTGAGAGATGATTGCGG+TGG | + | chr5.3:57218501-57218520 | None:intergenic | 50.0% | |
| GCCTCTTCCAGAACTCTACA+CGG | + | chr5.3:57218734-57218753 | None:intergenic | 50.0% | |
| GGAGTATGGGAATGCGTTGT+CGG | + | chr5.3:57218603-57218622 | None:intergenic | 50.0% | |
| TATTGTCCCGAGGTTCAGGT+TGG | - | chr5.3:57219851-57219870 | MS.gene009799:CDS | 50.0% | |
| TGCGGAGTGCAACTCATGTT+TGG | - | chr5.3:57219345-57219364 | MS.gene009799:CDS | 50.0% | |
| TGGAACTCTGTGTGCATGCT+GGG | - | chr5.3:57220062-57220081 | MS.gene009799:CDS | 50.0% | |
| TGGATATTGTCCCGAGGTTC+AGG | - | chr5.3:57219847-57219866 | MS.gene009799:CDS | 50.0% | |
| TTAGGACCAACCTGAACCTC+GGG | + | chr5.3:57219860-57219879 | None:intergenic | 50.0% | |
| ! | AGTGTCGGATGTGAAGGAGA+GGG | + | chr5.3:57218561-57218580 | None:intergenic | 50.0% |
| ! | GTGTTGGCAAGCCAAGAGTT+GGG | - | chr5.3:57219426-57219445 | MS.gene009799:intron | 50.0% |
| !! | AAGGGGAGGTGTTCAAGATG+TGG | - | chr5.3:57219370-57219389 | MS.gene009799:intron | 50.0% |
| !! | AAGTGTCGGATGTGAAGGAG+AGG | + | chr5.3:57218562-57218581 | None:intergenic | 50.0% |
| !! | CAACTCTTGGCTTGCCAACA+CGG | + | chr5.3:57219427-57219446 | None:intergenic | 50.0% |
| !! | GAGGTTCAGGTTGGTCCTAA+GGG | - | chr5.3:57219860-57219879 | MS.gene009799:CDS | 50.0% |
| !! | TGGAAGAGGCACCTGAGAAT+GGG | - | chr5.3:57218744-57218763 | MS.gene009799:CDS | 50.0% |
| AGGTGAGTCGGGACAAGTGT+CGG | + | chr5.3:57218576-57218595 | None:intergenic | 55.0% | |
| CAAGAGTTGGGCATGACGAG+AGG | - | chr5.3:57219438-57219457 | MS.gene009799:intron | 55.0% | |
| CTCTCGTCATGCCCAACTCT+TGG | + | chr5.3:57219440-57219459 | None:intergenic | 55.0% | |
| CTGGACCAAAGAGTTGGCTG+CGG | - | chr5.3:57219327-57219346 | MS.gene009799:CDS | 55.0% | |
| GCATACTCGCAGCGCAAAAC+CGG | + | chr5.3:57218863-57218882 | None:intergenic | 55.0% | |
| GGAACTCTGTGTGCATGCTG+GGG | - | chr5.3:57220063-57220082 | MS.gene009799:CDS | 55.0% | |
| GGCACAAGCAACCCATTCTC+AGG | + | chr5.3:57218758-57218777 | None:intergenic | 55.0% | |
| GGTTGGGTACGTCGGAGTAT+GGG | + | chr5.3:57218616-57218635 | None:intergenic | 55.0% | |
| GTGGAACTCTGTGTGCATGC+TGG | - | chr5.3:57220061-57220080 | MS.gene009799:CDS | 55.0% | |
| GTTGTCGGGATCAGGTGAGT+CGG | + | chr5.3:57218588-57218607 | None:intergenic | 55.0% | |
| TGAAGGAGAGGGTGGATGTG+AGG | + | chr5.3:57218550-57218569 | None:intergenic | 55.0% | |
| TGGTAAGGCTCCTGCTGTTG+TGG | - | chr5.3:57220042-57220061 | MS.gene009799:CDS | 55.0% | |
| TTGTCGGGATCAGGTGAGTC+GGG | + | chr5.3:57218587-57218606 | None:intergenic | 55.0% | |
| ! | AGCGGAGAGAGAAGCACGAA+AGG | - | chr5.3:57218703-57218722 | MS.gene009799:CDS | 55.0% |
| ! | CGTGTTGGCAAGCCAAGAGT+TGG | - | chr5.3:57219425-57219444 | MS.gene009799:intron | 55.0% |
| !! | CGAGGTTCAGGTTGGTCCTA+AGG | - | chr5.3:57219859-57219878 | MS.gene009799:CDS | 55.0% |
| !! | CTGGAAGAGGCACCTGAGAA+TGG | - | chr5.3:57218743-57218762 | MS.gene009799:CDS | 55.0% |
| !! | GCCGTGTAGAGTTCTGGAAG+AGG | - | chr5.3:57218730-57218749 | MS.gene009799:CDS | 55.0% |
| !! | GGGACAAGTGTCGGATGTGA+AGG | + | chr5.3:57218567-57218586 | None:intergenic | 55.0% |
| AGGAGAGGGTGGATGTGAGG+CGG | + | chr5.3:57218547-57218566 | None:intergenic | 60.0% | |
| GCACTCCGCAGCCAACTCTT+TGG | + | chr5.3:57219335-57219354 | None:intergenic | 60.0% | |
| GGGAATGCGTTGTCGGGATC+AGG | + | chr5.3:57218596-57218615 | None:intergenic | 60.0% | |
| GGGAGAGGCGGTTAAGGAGA+GGG | + | chr5.3:57218523-57218542 | None:intergenic | 60.0% | |
| GGGTTGGGTACGTCGGAGTA+TGG | + | chr5.3:57218617-57218636 | None:intergenic | 60.0% | |
| GTCGGATGTGAAGGAGAGGG+TGG | + | chr5.3:57218558-57218577 | None:intergenic | 60.0% | |
| TCGGCTAGGGTTGGGTACGT+CGG | + | chr5.3:57218624-57218643 | None:intergenic | 60.0% | |
| TGGGAGAGGCGGTTAAGGAG+AGG | + | chr5.3:57218524-57218543 | None:intergenic | 60.0% | |
| AGAGGGTGGATGTGAGGCGG+TGG | + | chr5.3:57218544-57218563 | None:intergenic | 65.0% | |
| ATGTGAGGCGGTGGGAGAGG+CGG | + | chr5.3:57218535-57218554 | None:intergenic | 65.0% | |
| GAGGGTGGATGTGAGGCGGT+GGG | + | chr5.3:57218543-57218562 | None:intergenic | 65.0% | |
| GGCGCAGCCGTGTAGAGTTC+TGG | - | chr5.3:57218724-57218743 | MS.gene009799:CDS | 65.0% | |
| TGGATGTGAGGCGGTGGGAG+AGG | + | chr5.3:57218538-57218557 | None:intergenic | 65.0% | |
| GGCGGTGGGAGAGGCGGTTA+AGG | + | chr5.3:57218529-57218548 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 57218491 | 57220168 | 57218491 | ID=MS.gene009799 |
| chr5.3 | mRNA | 57218491 | 57220168 | 57218491 | ID=MS.gene009799.t1;Parent=MS.gene009799 |
| chr5.3 | exon | 57219783 | 57220168 | 57219783 | ID=MS.gene009799.t1.exon1;Parent=MS.gene009799.t1 |
| chr5.3 | CDS | 57219783 | 57220168 | 57219783 | ID=cds.MS.gene009799.t1;Parent=MS.gene009799.t1 |
| chr5.3 | exon | 57218491 | 57219385 | 57218491 | ID=MS.gene009799.t1.exon2;Parent=MS.gene009799.t1 |
| chr5.3 | CDS | 57218491 | 57219385 | 57218491 | ID=cds.MS.gene009799.t1;Parent=MS.gene009799.t1 |
| Gene Sequence |
| Protein sequence |
