Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59283.t1 | AES75816.1 | 86.2 | 449 | 58 | 1 | 9 | 457 | 7 | 451 | 7.00E-231 | 809.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59283.t1 | Q9XIR4 | 65.2 | 388 | 133 | 1 | 72 | 457 | 49 | 436 | 5.9e-162 | 572.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59283.t1 | G7KMW7 | 86.2 | 449 | 58 | 1 | 9 | 457 | 7 | 451 | 5.1e-231 | 809.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59283 | MS.gene54153 | PPI |
| MS.gene009799 | MS.gene59283 | PPI |
| MS.gene50210 | MS.gene59283 | PPI |
| MS.gene59283 | MS.gene56984 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59283.t1 | MTR_6g059930 | 86.192 | 449 | 58 | 1 | 9 | 457 | 7 | 451 | 0.0 | 761 |
| MS.gene59283.t1 | MTR_6g059930 | 95.250 | 400 | 19 | 0 | 58 | 457 | 20 | 419 | 0.0 | 759 |
| MS.gene59283.t1 | MTR_2g088390 | 45.946 | 370 | 196 | 3 | 90 | 457 | 80 | 447 | 1.98e-118 | 354 |
| MS.gene59283.t1 | MTR_2g067610 | 47.840 | 324 | 166 | 2 | 135 | 457 | 8 | 329 | 5.46e-109 | 325 |
| MS.gene59283.t1 | MTR_5g072520 | 41.695 | 295 | 152 | 3 | 182 | 456 | 2 | 296 | 6.30e-82 | 260 |
| MS.gene59283.t1 | MTR_5g072520 | 29.365 | 126 | 88 | 1 | 149 | 273 | 161 | 286 | 2.42e-13 | 72.0 |
| MS.gene59283.t1 | MTR_2g088750 | 38.127 | 299 | 156 | 3 | 146 | 444 | 55 | 324 | 1.08e-68 | 223 |
| MS.gene59283.t1 | MTR_1g054885 | 51.948 | 77 | 35 | 2 | 377 | 452 | 2 | 77 | 4.91e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59283.t1 | AT1G64810 | 65.206 | 388 | 133 | 1 | 72 | 457 | 73 | 460 | 0.0 | 562 |
| MS.gene59283.t1 | AT1G64810 | 65.206 | 388 | 133 | 1 | 72 | 457 | 49 | 436 | 0.0 | 561 |
| MS.gene59283.t1 | AT5G57930 | 43.264 | 386 | 213 | 3 | 73 | 457 | 63 | 443 | 3.56e-110 | 333 |
| MS.gene59283.t1 | AT5G57930 | 43.264 | 386 | 213 | 3 | 73 | 457 | 60 | 440 | 5.39e-110 | 332 |
| MS.gene59283.t1 | AT5G61930 | 43.014 | 365 | 198 | 6 | 96 | 457 | 45 | 402 | 1.32e-101 | 309 |
| MS.gene59283.t1 | AT5G61930 | 43.014 | 365 | 198 | 6 | 96 | 457 | 45 | 402 | 1.32e-101 | 309 |
| MS.gene59283.t1 | AT3G21740 | 37.710 | 297 | 154 | 3 | 146 | 442 | 55 | 320 | 3.96e-58 | 195 |
Find 126 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCGGGAAATCGACATTT+TGG | 0.188456 | 6.4:-44504768 | None:intergenic |
| CTAACATGCCACACGTAATT+TGG | 0.213116 | 6.4:-44505976 | None:intergenic |
| AGCCTGTTTGATTTGTTTAA+AGG | 0.228852 | 6.4:-44504827 | None:intergenic |
| GGAACAAGCAATCCATTCTT+TGG | 0.306524 | 6.4:-44504904 | None:intergenic |
| TTATTTAAAATGTGATGATT+TGG | 0.322863 | 6.4:+44504380 | MS.gene59283:CDS |
| TTGATTTGTTTAAAGGGAAT+AGG | 0.347331 | 6.4:-44504820 | None:intergenic |
| TTGCATGTCATTCCTACATA+TGG | 0.349108 | 6.4:+44504997 | MS.gene59283:CDS |
| GCTGCGTTGAAGAGATATTA+TGG | 0.350367 | 6.4:+44506024 | MS.gene59283:CDS |
| AGAAAGAAATCAGCAGGATA+TGG | 0.358892 | 6.4:+44504279 | MS.gene59283:CDS |
| TGATTTGTTTAAAGGGAATA+GGG | 0.359796 | 6.4:-44504819 | None:intergenic |
| GCCTGTTTGATTTGTTTAAA+GGG | 0.365584 | 6.4:-44504826 | None:intergenic |
| TTGCACACAAACTTCTACTA+TGG | 0.373218 | 6.4:-44506058 | None:intergenic |
| TATCATCTCTTTGACCCATT+TGG | 0.375185 | 6.4:+44505472 | MS.gene59283:CDS |
| ATAGTTCTCATGCTTGGGTC+AGG | 0.375929 | 6.4:+44505413 | MS.gene59283:CDS |
| TGCATAATGCGCTTACCAAA+TGG | 0.376615 | 6.4:-44505487 | None:intergenic |
| TCCCTTTAAACAAATCAAAC+AGG | 0.403204 | 6.4:+44504825 | MS.gene59283:CDS |
| GTGGATCATTTAAGCATCAA+TGG | 0.408425 | 6.4:+44505902 | MS.gene59283:CDS |
| TGGCATGTTAGAGACATTAA+TGG | 0.410621 | 6.4:+44505988 | MS.gene59283:CDS |
| ATGTGATGATTTGGTAAAGT+TGG | 0.411803 | 6.4:+44504389 | MS.gene59283:CDS |
| TTCGTATGGGATTGGTCCTT+CGG | 0.411833 | 6.4:-44505597 | None:intergenic |
| CTCATGAAGTATTTGATGCT+TGG | 0.427194 | 6.4:+44504944 | MS.gene59283:CDS |
| CCCTACCATTCGTATGGGAT+TGG | 0.431055 | 6.4:-44505605 | None:intergenic |
| CTTCATGAGCAACGGGAACT+AGG | 0.441984 | 6.4:-44504930 | None:intergenic |
| TGCATATCAAATAGTTAGAA+AGG | 0.444834 | 6.4:+44505786 | MS.gene59283:CDS |
| CCTCTTGAACCTCCAAAGAA+TGG | 0.447913 | 6.4:+44504892 | MS.gene59283:CDS |
| TAGGAATGACATGCAAAAGC+TGG | 0.448627 | 6.4:-44504990 | None:intergenic |
| TTCCCGCCAAAGTTGCCAAA+AGG | 0.457458 | 6.4:+44504781 | MS.gene59283:CDS |
| GGAGGTTCATGTTGGACCGT+GGG | 0.464550 | 6.4:+44505861 | MS.gene59283:CDS |
| TATGGGATTGGTCCTTCGGC+GGG | 0.465553 | 6.4:-44505593 | None:intergenic |
| TCAAGCCGGCGTGGATATCC+CGG | 0.472145 | 6.4:+44505561 | MS.gene59283:CDS |
| GCATAATGCGCTTACCAAAT+GGG | 0.472311 | 6.4:-44505486 | None:intergenic |
| ACGTCATAGTTCTCATGCTT+GGG | 0.473814 | 6.4:+44505408 | MS.gene59283:CDS |
| TGTTTAAAGGGAATAGGGTA+TGG | 0.474860 | 6.4:-44504814 | None:intergenic |
| CGTCTCCACACAAATTCGTC+AGG | 0.475595 | 6.4:-44504733 | None:intergenic |
| TCTCTTCAACGCAGCCGTGA+TGG | 0.477116 | 6.4:-44506016 | None:intergenic |
| TCTTCTCCCTACCATTCGTA+TGG | 0.479218 | 6.4:-44505611 | None:intergenic |
| TCAAATACTTCATGAGCAAC+GGG | 0.479703 | 6.4:-44504937 | None:intergenic |
| CTCTTCAACGCAGCCGTGAT+GGG | 0.482385 | 6.4:-44506015 | None:intergenic |
| CACGTCATAGTTCTCATGCT+TGG | 0.482980 | 6.4:+44505407 | MS.gene59283:CDS |
| ATTCCCGCCTCATCTGTGTC+TGG | 0.482983 | 6.4:-44506138 | None:intergenic |
| GCTCAACAACAGCTGGAATC+CGG | 0.485227 | 6.4:-44505531 | None:intergenic |
| TAGTTCTCATGCTTGGGTCA+GGG | 0.486077 | 6.4:+44505414 | MS.gene59283:CDS |
| GGTCACAATGCAAAGCTTTG+TGG | 0.487513 | 6.4:+44505883 | MS.gene59283:CDS |
| AAGTGTAGATCGGCATTACC+TGG | 0.487530 | 6.4:+44504679 | MS.gene59283:CDS |
| CTTCGGCGGGATGGATACTC+CGG | 0.489479 | 6.4:-44505580 | None:intergenic |
| TCCCGCCAAAGTTGCCAAAA+GGG | 0.490337 | 6.4:+44504782 | MS.gene59283:CDS |
| GGATTGGTCCTTCGGCGGGA+TGG | 0.499182 | 6.4:-44505589 | None:intergenic |
| CGATTTCTGCAGTGAATGCT+CGG | 0.504459 | 6.4:+44505324 | MS.gene59283:intron |
| GCAAGCTGGTGCACGTATAC+CGG | 0.508230 | 6.4:+44506077 | MS.gene59283:CDS |
| ATGAATAGAAAGAAATCAGC+AGG | 0.510789 | 6.4:+44504273 | MS.gene59283:CDS |
| CCATTCTTTGGAGGTTCAAG+AGG | 0.510935 | 6.4:-44504892 | None:intergenic |
| AGATGGAAAACATGGTTGGC+AGG | 0.511785 | 6.4:+44505927 | MS.gene59283:CDS |
| TCTGCAGAGCGCGATGACTC+AGG | 0.512586 | 6.4:-44505664 | None:intergenic |
| ATGCAGAGCTCAACAACAGC+TGG | 0.512811 | 6.4:-44505538 | None:intergenic |
| GAAATCAGCAGGATATGGAT+TGG | 0.513501 | 6.4:+44504284 | MS.gene59283:CDS |
| AAGAGATGATACGACTCAAT+CGG | 0.514846 | 6.4:-44505460 | None:intergenic |
| ACGGCCTTCGCAATCTAGAA+TGG | 0.515917 | 6.4:-44505374 | None:intergenic |
| ATCAAATACTTCATGAGCAA+CGG | 0.518555 | 6.4:-44504938 | None:intergenic |
| GAGTAATACTTTGTGCCAAT+CGG | 0.519093 | 6.4:+44504701 | MS.gene59283:CDS |
| TGAGCAACGGGAACTAGGTC+AGG | 0.519988 | 6.4:-44504925 | None:intergenic |
| AGAACTATGACGTGTTGAAC+TGG | 0.520026 | 6.4:-44505398 | None:intergenic |
| AGTTCTCATGCTTGGGTCAG+GGG | 0.522413 | 6.4:+44505415 | MS.gene59283:CDS |
| CTTCTCCCTACCATTCGTAT+GGG | 0.523487 | 6.4:-44505610 | None:intergenic |
| GGAAAGAAAACTTGCTAGCA+AGG | 0.530795 | 6.4:+44504858 | MS.gene59283:CDS |
| ACAAGCAATCCATTCTTTGG+AGG | 0.530814 | 6.4:-44504901 | None:intergenic |
| ACGTCTGACAACGGTGGAGG+GGG | 0.534026 | 6.4:-44505736 | None:intergenic |
| TCAATGCAGTCGACAGATCA+TGG | 0.534127 | 6.4:+44504319 | MS.gene59283:CDS |
| GGTACGTCTGACAACGGTGG+AGG | 0.534438 | 6.4:-44505739 | None:intergenic |
| GAAGTACATGTGGCTCAGAC+TGG | 0.537083 | 6.4:+44505346 | MS.gene59283:CDS |
| CGGAGGTTCATGTTGGACCG+TGG | 0.546022 | 6.4:+44505860 | MS.gene59283:CDS |
| ATCAACGGCTTGTACTCGTC+CGG | 0.547415 | 6.4:-44506096 | None:intergenic |
| AATCAAACAGGCTGCAAAGA+CGG | 0.548813 | 6.4:+44504837 | MS.gene59283:CDS |
| GTTGAGCTCTGCATTCAAGC+CGG | 0.549404 | 6.4:+44505547 | MS.gene59283:CDS |
| TATTGCTCGGAGGTTCATGT+TGG | 0.552092 | 6.4:+44505853 | MS.gene59283:CDS |
| CAATGGAGAGATGGAAAACA+TGG | 0.554191 | 6.4:+44505919 | MS.gene59283:CDS |
| ATCCGACTGCAGTGATTGCA+TGG | 0.560525 | 6.4:+44504422 | MS.gene59283:CDS |
| GAAAGCATGCGGTTATTGCT+CGG | 0.560639 | 6.4:+44505840 | MS.gene59283:CDS |
| GCATATCAAATAGTTAGAAA+GGG | 0.563121 | 6.4:+44505787 | MS.gene59283:CDS |
| ACACAAACTTCTACTATGGC+AGG | 0.563557 | 6.4:-44506054 | None:intergenic |
| TTTAAGCATCAATGGAGAGA+TGG | 0.566672 | 6.4:+44505910 | MS.gene59283:CDS |
| TACGTCTGACAACGGTGGAG+GGG | 0.567599 | 6.4:-44505737 | None:intergenic |
| TACCATGCAATCACTGCAGT+CGG | 0.569596 | 6.4:-44504424 | None:intergenic |
| GTCAGGTCTAAGCTTCCGAT+TGG | 0.569871 | 6.4:-44504716 | None:intergenic |
| ACATGCCACACGTAATTTGG+AGG | 0.570824 | 6.4:-44505973 | None:intergenic |
| CGGAGTATCCATCCCGCCGA+AGG | 0.573838 | 6.4:+44505581 | MS.gene59283:CDS |
| ACCAATCCCATACGAATGGT+AGG | 0.584314 | 6.4:+44505604 | MS.gene59283:CDS |
| ACAATTCAACAAGTGTAGAT+CGG | 0.588302 | 6.4:+44504669 | MS.gene59283:CDS |
| GGAGAGATGGAAAACATGGT+TGG | 0.592522 | 6.4:+44505923 | MS.gene59283:CDS |
| TGACAGAGGCGGACATCTAG+AGG | 0.592707 | 6.4:+44505639 | MS.gene59283:CDS |
| GTGTACCTACAGCCATATGT+AGG | 0.593414 | 6.4:-44505009 | None:intergenic |
| AGGAATGACATGCAAAAGCT+GGG | 0.594387 | 6.4:-44504989 | None:intergenic |
| GTATGGGATTGGTCCTTCGG+CGG | 0.595789 | 6.4:-44505594 | None:intergenic |
| ATACACGGTTTGAATACGAC+CGG | 0.596321 | 6.4:+44505512 | MS.gene59283:CDS |
| TCGTTGAGATCAAGATCAGA+TGG | 0.602979 | 6.4:+44504342 | MS.gene59283:CDS |
| TTCAACGCAGCCGTGATGGG+AGG | 0.603188 | 6.4:-44506012 | None:intergenic |
| AGCTTTGCATTGTGACCCCA+CGG | 0.605815 | 6.4:-44505877 | None:intergenic |
| TATGACGTGTTGAACTGGTA+CGG | 0.605983 | 6.4:-44505393 | None:intergenic |
| ATTCCAGACACAGATGAGGC+GGG | 0.610636 | 6.4:+44506135 | MS.gene59283:CDS |
| CCAATCCCATACGAATGGTA+GGG | 0.610958 | 6.4:+44505605 | MS.gene59283:CDS |
| GTACGTCTGACAACGGTGGA+GGG | 0.615937 | 6.4:-44505738 | None:intergenic |
| TTCGGCGGGATGGATACTCC+GGG | 0.618728 | 6.4:-44505579 | None:intergenic |
| TTGGCACAAAGTATTACTCC+AGG | 0.619449 | 6.4:-44504697 | None:intergenic |
| ACGAGTACAAGCCGTTGATG+AGG | 0.627677 | 6.4:+44506100 | MS.gene59283:CDS |
| TCATTCCTACATATGGCTGT+AGG | 0.628103 | 6.4:+44505004 | MS.gene59283:CDS |
| ACAATATCAAGCCTCATCAA+CGG | 0.629198 | 6.4:-44506111 | None:intergenic |
| CACTCCATTCTAGATTGCGA+AGG | 0.630177 | 6.4:+44505370 | MS.gene59283:CDS |
| GGGGAAATCGATCACCAGCT+CGG | 0.633708 | 6.4:-44505717 | None:intergenic |
| AAGGACCAATCCCATACGAA+TGG | 0.640304 | 6.4:+44505600 | MS.gene59283:CDS |
| AATTCCAGACACAGATGAGG+CGG | 0.641140 | 6.4:+44506134 | MS.gene59283:CDS |
| CATTAATGGACCTCCCATCA+CGG | 0.643796 | 6.4:+44506002 | MS.gene59283:CDS |
| AGCGCATTATGCATGATACA+CGG | 0.649042 | 6.4:+44505497 | MS.gene59283:CDS |
| TGAATGCTCGGAAGTACATG+TGG | 0.653362 | 6.4:+44505336 | MS.gene59283:CDS |
| GTTGAAGAGATATTATGGAA+AGG | 0.653812 | 6.4:+44506029 | MS.gene59283:CDS |
| GAAAGAAAACTTGCTAGCAA+GGG | 0.657753 | 6.4:+44504859 | MS.gene59283:CDS |
| GTAGAAGTTTGTGTGCAAGC+TGG | 0.667266 | 6.4:+44506063 | MS.gene59283:CDS |
| AAATACACGGTGAAAGCATG+CGG | 0.672006 | 6.4:+44505829 | MS.gene59283:CDS |
| TGTAATTCCAGACACAGATG+AGG | 0.676525 | 6.4:+44506131 | MS.gene59283:CDS |
| GGGAGAAGAGTACTTGACAG+AGG | 0.676607 | 6.4:+44505625 | MS.gene59283:CDS |
| GAGGTTCATGTTGGACCGTG+GGG | 0.679811 | 6.4:+44505862 | MS.gene59283:CDS |
| GCTCTGCATTCAAGCCGGCG+TGG | 0.681643 | 6.4:+44505552 | MS.gene59283:CDS |
| AGAAGAGTACTTGACAGAGG+CGG | 0.682036 | 6.4:+44505628 | MS.gene59283:CDS |
| TTAGACCTGACGAATTTGTG+TGG | 0.683473 | 6.4:+44504728 | MS.gene59283:CDS |
| AGCATGCGGTTATTGCTCGG+AGG | 0.699987 | 6.4:+44505843 | MS.gene59283:CDS |
| TTAGGTACGTCTGACAACGG+TGG | 0.710969 | 6.4:-44505742 | None:intergenic |
| GAAGTTGATGAAGAAATACA+CGG | 0.719815 | 6.4:+44505816 | MS.gene59283:CDS |
| ATACTCCGGGATATCCACGC+CGG | 0.731710 | 6.4:-44505566 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAAAATGTGATGATT+TGG | + | chr6.4:44504380-44504399 | MS.gene59283:CDS | 15.0% |
| !! | AATCATCGAGAAAAATAAAT+CGG | + | chr6.4:44505111-44505130 | MS.gene59283:intron | 20.0% |
| !!! | TTTTTTAATGAAGACCATTA+TGG | + | chr6.4:44505061-44505080 | MS.gene59283:intron | 20.0% |
| ! | AAAGATAAACTATTGAGAAG+GGG | - | chr6.4:44504625-44504644 | None:intergenic | 25.0% |
| ! | ACAAAGATAAACTATTGAGA+AGG | - | chr6.4:44504627-44504646 | None:intergenic | 25.0% |
| ! | ATAAAACATGTCACATTAGA+AGG | + | chr6.4:44504523-44504542 | MS.gene59283:intron | 25.0% |
| ! | ATCATCGAGAAAAATAAATC+GGG | + | chr6.4:44505112-44505131 | MS.gene59283:intron | 25.0% |
| ! | CAAAGATAAACTATTGAGAA+GGG | - | chr6.4:44504626-44504645 | None:intergenic | 25.0% |
| ! | CATAATATTCGAGAATTGTT+TGG | - | chr6.4:44504574-44504593 | None:intergenic | 25.0% |
| ! | GCATATCAAATAGTTAGAAA+GGG | + | chr6.4:44505787-44505806 | MS.gene59283:CDS | 25.0% |
| ! | TGCATATCAAATAGTTAGAA+AGG | + | chr6.4:44505786-44505805 | MS.gene59283:CDS | 25.0% |
| !! | ATAGTTTCTTGAGCAATTTT+AGG | - | chr6.4:44505763-44505782 | None:intergenic | 25.0% |
| !!! | ATTTTGAGTTTAGTTCAAGT+AGG | - | chr6.4:44505149-44505168 | None:intergenic | 25.0% |
| !!! | TGAGTCTTTACTCTTTTTTT+TGG | + | chr6.4:44505227-44505246 | MS.gene59283:intron | 25.0% |
| !!! | TGATTTGTTTAAAGGGAATA+GGG | - | chr6.4:44504822-44504841 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTAAAGGGAAT+AGG | - | chr6.4:44504823-44504842 | None:intergenic | 25.0% |
| !!! | TTTTATTTTAATGTCGATGC+AGG | + | chr6.4:44505282-44505301 | MS.gene59283:intron | 25.0% |
| !!! | TTTTGAGTTTAGTTCAAGTA+GGG | - | chr6.4:44505148-44505167 | None:intergenic | 25.0% |
| AAAACAAATGCAACGAAACT+TGG | - | chr6.4:44505260-44505279 | None:intergenic | 30.0% | |
| AAAAGAGTAAAGACTCATTG+TGG | - | chr6.4:44505224-44505243 | None:intergenic | 30.0% | |
| ACAATTCAACAAGTGTAGAT+CGG | + | chr6.4:44504669-44504688 | MS.gene59283:CDS | 30.0% | |
| ATCAAATACTTCATGAGCAA+CGG | - | chr6.4:44504941-44504960 | None:intergenic | 30.0% | |
| ATGAATAGAAAGAAATCAGC+AGG | + | chr6.4:44504273-44504292 | MS.gene59283:CDS | 30.0% | |
| GCAAAAAGGAATCAAAAGTA+GGG | + | chr6.4:44504548-44504567 | MS.gene59283:intron | 30.0% | |
| GCTCATATAGGATTTGAATT+GGG | - | chr6.4:44504461-44504480 | None:intergenic | 30.0% | |
| GTTGAAGAGATATTATGGAA+AGG | + | chr6.4:44506029-44506048 | MS.gene59283:CDS | 30.0% | |
| TCCCTTTAAACAAATCAAAC+AGG | + | chr6.4:44504825-44504844 | MS.gene59283:CDS | 30.0% | |
| TGCTCATATAGGATTTGAAT+TGG | - | chr6.4:44504462-44504481 | None:intergenic | 30.0% | |
| ! | ATTTTTCTCACAGACCATAA+TGG | - | chr6.4:44505078-44505097 | None:intergenic | 30.0% |
| !! | AGCCTGTTTGATTTGTTTAA+AGG | - | chr6.4:44504830-44504849 | None:intergenic | 30.0% |
| !! | ATGTGATGATTTGGTAAAGT+TGG | + | chr6.4:44504389-44504408 | MS.gene59283:CDS | 30.0% |
| !! | GAAGTTGATGAAGAAATACA+CGG | + | chr6.4:44505816-44505835 | MS.gene59283:CDS | 30.0% |
| !! | GCCTGTTTGATTTGTTTAAA+GGG | - | chr6.4:44504829-44504848 | None:intergenic | 30.0% |
| !!! | TATGGTTTTTTCTTCCCTTT+TGG | - | chr6.4:44504799-44504818 | None:intergenic | 30.0% |
| AAACATGTCACATTAGAAGG+TGG | + | chr6.4:44504526-44504545 | MS.gene59283:intron | 35.0% | |
| AAGAGATGATACGACTCAAT+CGG | - | chr6.4:44505463-44505482 | None:intergenic | 35.0% | |
| ACAATATCAAGCCTCATCAA+CGG | - | chr6.4:44506114-44506133 | None:intergenic | 35.0% | |
| ACCAACATCTATGCTCATAT+AGG | - | chr6.4:44504473-44504492 | None:intergenic | 35.0% | |
| ACTAGAAGATAAGCACAGTA+TGG | - | chr6.4:44505034-44505053 | None:intergenic | 35.0% | |
| AGAAAGAAATCAGCAGGATA+TGG | + | chr6.4:44504279-44504298 | MS.gene59283:CDS | 35.0% | |
| ATTGTGGTCCTTGAGAAAAT+GGG | - | chr6.4:44505208-44505227 | None:intergenic | 35.0% | |
| CTTGAGAAAATGGGATAACT+TGG | - | chr6.4:44505199-44505218 | None:intergenic | 35.0% | |
| GAGTAATACTTTGTGCCAAT+CGG | + | chr6.4:44504701-44504720 | MS.gene59283:CDS | 35.0% | |
| GGCAAAAAGGAATCAAAAGT+AGG | + | chr6.4:44504547-44504566 | MS.gene59283:intron | 35.0% | |
| GTGGATCATTTAAGCATCAA+TGG | + | chr6.4:44505902-44505921 | MS.gene59283:CDS | 35.0% | |
| TATCATCTCTTTGACCCATT+TGG | + | chr6.4:44505472-44505491 | MS.gene59283:CDS | 35.0% | |
| TCAAATACTTCATGAGCAAC+GGG | - | chr6.4:44504940-44504959 | None:intergenic | 35.0% | |
| TCCTATATGAGCATAGATGT+TGG | + | chr6.4:44504469-44504488 | MS.gene59283:intron | 35.0% | |
| TGGCATGTTAGAGACATTAA+TGG | + | chr6.4:44505988-44506007 | MS.gene59283:CDS | 35.0% | |
| TGTTTAAAGGGAATAGGGTA+TGG | - | chr6.4:44504817-44504836 | None:intergenic | 35.0% | |
| TTGAACATCTCAATCTAACC+AGG | - | chr6.4:44504504-44504523 | None:intergenic | 35.0% | |
| TTGCACACAAACTTCTACTA+TGG | - | chr6.4:44506061-44506080 | None:intergenic | 35.0% | |
| TTGCATGTCATTCCTACATA+TGG | + | chr6.4:44504997-44505016 | MS.gene59283:CDS | 35.0% | |
| TTTAAGCATCAATGGAGAGA+TGG | + | chr6.4:44505910-44505929 | MS.gene59283:CDS | 35.0% | |
| ! | CAAGTTATCCCATTTTCTCA+AGG | + | chr6.4:44505197-44505216 | MS.gene59283:intron | 35.0% |
| ! | CTCATGAAGTATTTGATGCT+TGG | + | chr6.4:44504944-44504963 | MS.gene59283:CDS | 35.0% |
| ! | TTTTACCTCCAAATTACGTG+TGG | + | chr6.4:44505968-44505987 | MS.gene59283:CDS | 35.0% |
| !! | ATTTTAGGTACGTCTGACAA+CGG | - | chr6.4:44505748-44505767 | None:intergenic | 35.0% |
| !! | GAAAGAAAACTTGCTAGCAA+GGG | + | chr6.4:44504859-44504878 | MS.gene59283:CDS | 35.0% |
| !! | GCTTGGAAGCTTTTGATTAA+AGG | + | chr6.4:44504961-44504980 | MS.gene59283:CDS | 35.0% |
| AATCAAACAGGCTGCAAAGA+CGG | + | chr6.4:44504837-44504856 | MS.gene59283:CDS | 40.0% | |
| ACAAGCAATCCATTCTTTGG+AGG | - | chr6.4:44504904-44504923 | None:intergenic | 40.0% | |
| ACACAAACTTCTACTATGGC+AGG | - | chr6.4:44506057-44506076 | None:intergenic | 40.0% | |
| ACGTCATAGTTCTCATGCTT+GGG | + | chr6.4:44505408-44505427 | MS.gene59283:CDS | 40.0% | |
| AGAACTATGACGTGTTGAAC+TGG | - | chr6.4:44505401-44505420 | None:intergenic | 40.0% | |
| AGCGCATTATGCATGATACA+CGG | + | chr6.4:44505497-44505516 | MS.gene59283:CDS | 40.0% | |
| AGGAATGACATGCAAAAGCT+GGG | - | chr6.4:44504992-44505011 | None:intergenic | 40.0% | |
| ATACACGGTTTGAATACGAC+CGG | + | chr6.4:44505512-44505531 | MS.gene59283:CDS | 40.0% | |
| CAATGGAGAGATGGAAAACA+TGG | + | chr6.4:44505919-44505938 | MS.gene59283:CDS | 40.0% | |
| CACATTAGAAGGTGGCAAAA+AGG | + | chr6.4:44504534-44504553 | MS.gene59283:intron | 40.0% | |
| CATTGTGGTCCTTGAGAAAA+TGG | - | chr6.4:44505209-44505228 | None:intergenic | 40.0% | |
| CTAACATGCCACACGTAATT+TGG | - | chr6.4:44505979-44505998 | None:intergenic | 40.0% | |
| GAAATCAGCAGGATATGGAT+TGG | + | chr6.4:44504284-44504303 | MS.gene59283:CDS | 40.0% | |
| GCATAATGCGCTTACCAAAT+GGG | - | chr6.4:44505489-44505508 | None:intergenic | 40.0% | |
| GCTGCGTTGAAGAGATATTA+TGG | + | chr6.4:44506024-44506043 | MS.gene59283:CDS | 40.0% | |
| GGAACAAGCAATCCATTCTT+TGG | - | chr6.4:44504907-44504926 | None:intergenic | 40.0% | |
| GTAATGTTCTGCTACTGCTA+GGG | + | chr6.4:44505172-44505191 | MS.gene59283:intron | 40.0% | |
| TAGGAATGACATGCAAAAGC+TGG | - | chr6.4:44504993-44505012 | None:intergenic | 40.0% | |
| TATGACGTGTTGAACTGGTA+CGG | - | chr6.4:44505396-44505415 | None:intergenic | 40.0% | |
| TCATTCCTACATATGGCTGT+AGG | + | chr6.4:44505004-44505023 | MS.gene59283:CDS | 40.0% | |
| TCGTTGAGATCAAGATCAGA+TGG | + | chr6.4:44504342-44504361 | MS.gene59283:CDS | 40.0% | |
| TGCATAATGCGCTTACCAAA+TGG | - | chr6.4:44505490-44505509 | None:intergenic | 40.0% | |
| TGTAATTCCAGACACAGATG+AGG | + | chr6.4:44506131-44506150 | MS.gene59283:CDS | 40.0% | |
| TTAGACCTGACGAATTTGTG+TGG | + | chr6.4:44504728-44504747 | MS.gene59283:CDS | 40.0% | |
| ! | AAATACACGGTGAAAGCATG+CGG | + | chr6.4:44505829-44505848 | MS.gene59283:CDS | 40.0% |
| ! | TTCTTCCCTTTTGGCAACTT+TGG | - | chr6.4:44504790-44504809 | None:intergenic | 40.0% |
| ! | TTGGCACAAAGTATTACTCC+AGG | - | chr6.4:44504700-44504719 | None:intergenic | 40.0% |
| !! | AGATGTTGGTTTCTGAAACC+TGG | + | chr6.4:44504483-44504502 | MS.gene59283:intron | 40.0% |
| !! | GATTTTGATACTTACCGAGC+TGG | + | chr6.4:44505703-44505722 | MS.gene59283:CDS | 40.0% |
| !! | GGAAAGAAAACTTGCTAGCA+AGG | + | chr6.4:44504858-44504877 | MS.gene59283:CDS | 40.0% |
| AAGGACCAATCCCATACGAA+TGG | + | chr6.4:44505600-44505619 | MS.gene59283:CDS | 45.0% | |
| AAGTGTAGATCGGCATTACC+TGG | + | chr6.4:44504679-44504698 | MS.gene59283:CDS | 45.0% | |
| AATTCCAGACACAGATGAGG+CGG | + | chr6.4:44506134-44506153 | MS.gene59283:CDS | 45.0% | |
| ACATGCCACACGTAATTTGG+AGG | - | chr6.4:44505976-44505995 | None:intergenic | 45.0% | |
| ACCAATCCCATACGAATGGT+AGG | + | chr6.4:44505604-44505623 | MS.gene59283:CDS | 45.0% | |
| AGATGGAAAACATGGTTGGC+AGG | + | chr6.4:44505927-44505946 | MS.gene59283:CDS | 45.0% | |
| ATAGTTCTCATGCTTGGGTC+AGG | + | chr6.4:44505413-44505432 | MS.gene59283:CDS | 45.0% | |
| CACGTCATAGTTCTCATGCT+TGG | + | chr6.4:44505407-44505426 | MS.gene59283:CDS | 45.0% | |
| CACTCCATTCTAGATTGCGA+AGG | + | chr6.4:44505370-44505389 | MS.gene59283:CDS | 45.0% | |
| CCAATCCCATACGAATGGTA+GGG | + | chr6.4:44505605-44505624 | MS.gene59283:CDS | 45.0% | |
| CCTCTTGAACCTCCAAAGAA+TGG | + | chr6.4:44504892-44504911 | MS.gene59283:CDS | 45.0% | |
| CGATTTCTGCAGTGAATGCT+CGG | + | chr6.4:44505324-44505343 | MS.gene59283:intron | 45.0% | |
| CGTAATGTTCTGCTACTGCT+AGG | + | chr6.4:44505171-44505190 | MS.gene59283:intron | 45.0% | |
| CTTCTCCCTACCATTCGTAT+GGG | - | chr6.4:44505613-44505632 | None:intergenic | 45.0% | |
| GGAGAGATGGAAAACATGGT+TGG | + | chr6.4:44505923-44505942 | MS.gene59283:CDS | 45.0% | |
| GGTCACAATGCAAAGCTTTG+TGG | + | chr6.4:44505883-44505902 | MS.gene59283:CDS | 45.0% | |
| GTAGAAGTTTGTGTGCAAGC+TGG | + | chr6.4:44506063-44506082 | MS.gene59283:CDS | 45.0% | |
| GTGTACCTACAGCCATATGT+AGG | - | chr6.4:44505012-44505031 | None:intergenic | 45.0% | |
| TACCATGCAATCACTGCAGT+CGG | - | chr6.4:44504427-44504446 | None:intergenic | 45.0% | |
| TAGTTCTCATGCTTGGGTCA+GGG | + | chr6.4:44505414-44505433 | MS.gene59283:CDS | 45.0% | |
| TATTGCTCGGAGGTTCATGT+TGG | + | chr6.4:44505853-44505872 | MS.gene59283:CDS | 45.0% | |
| TCAATGCAGTCGACAGATCA+TGG | + | chr6.4:44504319-44504338 | MS.gene59283:CDS | 45.0% | |
| TCTTCTCCCTACCATTCGTA+TGG | - | chr6.4:44505614-44505633 | None:intergenic | 45.0% | |
| ! | CATTAATGGACCTCCCATCA+CGG | + | chr6.4:44506002-44506021 | MS.gene59283:CDS | 45.0% |
| ! | CCATTCTTTGGAGGTTCAAG+AGG | - | chr6.4:44504895-44504914 | None:intergenic | 45.0% |
| ! | GAAAGCATGCGGTTATTGCT+CGG | + | chr6.4:44505840-44505859 | MS.gene59283:CDS | 45.0% |
| ! | TGAATGCTCGGAAGTACATG+TGG | + | chr6.4:44505336-44505355 | MS.gene59283:CDS | 45.0% |
| ! | TGGCGGGAAATCGACATTTT+GGG | - | chr6.4:44504770-44504789 | None:intergenic | 45.0% |
| ! | TTCCCTTTTGGCAACTTTGG+CGG | - | chr6.4:44504787-44504806 | None:intergenic | 45.0% |
| ! | TTGGCGGGAAATCGACATTT+TGG | - | chr6.4:44504771-44504790 | None:intergenic | 45.0% |
| !! | AGAAGAGTACTTGACAGAGG+CGG | + | chr6.4:44505628-44505647 | MS.gene59283:CDS | 45.0% |
| !! | TTCGTATGGGATTGGTCCTT+CGG | - | chr6.4:44505600-44505619 | None:intergenic | 45.0% |
| ACGAGTACAAGCCGTTGATG+AGG | + | chr6.4:44506100-44506119 | MS.gene59283:CDS | 50.0% | |
| ACGGCCTTCGCAATCTAGAA+TGG | - | chr6.4:44505377-44505396 | None:intergenic | 50.0% | |
| AGCTTTGCATTGTGACCCCA+CGG | - | chr6.4:44505880-44505899 | None:intergenic | 50.0% | |
| AGTTCTCATGCTTGGGTCAG+GGG | + | chr6.4:44505415-44505434 | MS.gene59283:CDS | 50.0% | |
| ATCAACGGCTTGTACTCGTC+CGG | - | chr6.4:44506099-44506118 | None:intergenic | 50.0% | |
| ATCCGACTGCAGTGATTGCA+TGG | + | chr6.4:44504422-44504441 | MS.gene59283:CDS | 50.0% | |
| ATGCAGAGCTCAACAACAGC+TGG | - | chr6.4:44505541-44505560 | None:intergenic | 50.0% | |
| ATTCCAGACACAGATGAGGC+GGG | + | chr6.4:44506135-44506154 | MS.gene59283:CDS | 50.0% | |
| CCCTACCATTCGTATGGGAT+TGG | - | chr6.4:44505608-44505627 | None:intergenic | 50.0% | |
| CGTCTCCACACAAATTCGTC+AGG | - | chr6.4:44504736-44504755 | None:intergenic | 50.0% | |
| CTTCATGAGCAACGGGAACT+AGG | - | chr6.4:44504933-44504952 | None:intergenic | 50.0% | |
| GAAGTACATGTGGCTCAGAC+TGG | + | chr6.4:44505346-44505365 | MS.gene59283:CDS | 50.0% | |
| GCTCAACAACAGCTGGAATC+CGG | - | chr6.4:44505534-44505553 | None:intergenic | 50.0% | |
| GTCAGGTCTAAGCTTCCGAT+TGG | - | chr6.4:44504719-44504738 | None:intergenic | 50.0% | |
| GTTGAGCTCTGCATTCAAGC+CGG | + | chr6.4:44505547-44505566 | MS.gene59283:CDS | 50.0% | |
| TCCCGCCAAAGTTGCCAAAA+GGG | + | chr6.4:44504782-44504801 | MS.gene59283:CDS | 50.0% | |
| TTAGGTACGTCTGACAACGG+TGG | - | chr6.4:44505745-44505764 | None:intergenic | 50.0% | |
| TTCCCGCCAAAGTTGCCAAA+AGG | + | chr6.4:44504781-44504800 | MS.gene59283:CDS | 50.0% | |
| ! | TCCCTTTTGGCAACTTTGGC+GGG | - | chr6.4:44504786-44504805 | None:intergenic | 50.0% |
| !! | GGGAGAAGAGTACTTGACAG+AGG | + | chr6.4:44505625-44505644 | MS.gene59283:CDS | 50.0% |
| AGCATGCGGTTATTGCTCGG+AGG | + | chr6.4:44505843-44505862 | MS.gene59283:CDS | 55.0% | |
| ATACTCCGGGATATCCACGC+CGG | - | chr6.4:44505569-44505588 | None:intergenic | 55.0% | |
| ATTCCCGCCTCATCTGTGTC+TGG | - | chr6.4:44506141-44506160 | None:intergenic | 55.0% | |
| CTCTTCAACGCAGCCGTGAT+GGG | - | chr6.4:44506018-44506037 | None:intergenic | 55.0% | |
| GAGGTTCATGTTGGACCGTG+GGG | + | chr6.4:44505862-44505881 | MS.gene59283:CDS | 55.0% | |
| GCAAGCTGGTGCACGTATAC+CGG | + | chr6.4:44506077-44506096 | MS.gene59283:CDS | 55.0% | |
| GGAGGTTCATGTTGGACCGT+GGG | + | chr6.4:44505861-44505880 | MS.gene59283:CDS | 55.0% | |
| GGGGAAATCGATCACCAGCT+CGG | - | chr6.4:44505720-44505739 | None:intergenic | 55.0% | |
| GTACGTCTGACAACGGTGGA+GGG | - | chr6.4:44505741-44505760 | None:intergenic | 55.0% | |
| TACGTCTGACAACGGTGGAG+GGG | - | chr6.4:44505740-44505759 | None:intergenic | 55.0% | |
| TCTCTTCAACGCAGCCGTGA+TGG | - | chr6.4:44506019-44506038 | None:intergenic | 55.0% | |
| TGACAGAGGCGGACATCTAG+AGG | + | chr6.4:44505639-44505658 | MS.gene59283:CDS | 55.0% | |
| TGAGCAACGGGAACTAGGTC+AGG | - | chr6.4:44504928-44504947 | None:intergenic | 55.0% | |
| !! | GTATGGGATTGGTCCTTCGG+CGG | - | chr6.4:44505597-44505616 | None:intergenic | 55.0% |
| !! | TATGGGATTGGTCCTTCGGC+GGG | - | chr6.4:44505596-44505615 | None:intergenic | 55.0% |
| ACGTCTGACAACGGTGGAGG+GGG | - | chr6.4:44505739-44505758 | None:intergenic | 60.0% | |
| CGGAGGTTCATGTTGGACCG+TGG | + | chr6.4:44505860-44505879 | MS.gene59283:CDS | 60.0% | |
| CTTCGGCGGGATGGATACTC+CGG | - | chr6.4:44505583-44505602 | None:intergenic | 60.0% | |
| GGTACGTCTGACAACGGTGG+AGG | - | chr6.4:44505742-44505761 | None:intergenic | 60.0% | |
| TCAAGCCGGCGTGGATATCC+CGG | + | chr6.4:44505561-44505580 | MS.gene59283:CDS | 60.0% | |
| TCTGCAGAGCGCGATGACTC+AGG | - | chr6.4:44505667-44505686 | None:intergenic | 60.0% | |
| TTCGGCGGGATGGATACTCC+GGG | - | chr6.4:44505582-44505601 | None:intergenic | 60.0% | |
| ! | TTCAACGCAGCCGTGATGGG+AGG | - | chr6.4:44506015-44506034 | None:intergenic | 60.0% |
| GCTCTGCATTCAAGCCGGCG+TGG | + | chr6.4:44505552-44505571 | MS.gene59283:CDS | 65.0% | |
| ! | CGGAGTATCCATCCCGCCGA+AGG | + | chr6.4:44505581-44505600 | MS.gene59283:CDS | 65.0% |
| !! | GGATTGGTCCTTCGGCGGGA+TGG | - | chr6.4:44505592-44505611 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 44504273 | 44506170 | 44504273 | ID=MS.gene59283 |
| chr6.4 | mRNA | 44504273 | 44506170 | 44504273 | ID=MS.gene59283.t1;Parent=MS.gene59283 |
| chr6.4 | exon | 44504273 | 44504443 | 44504273 | ID=MS.gene59283.t1.exon1;Parent=MS.gene59283.t1 |
| chr6.4 | CDS | 44504273 | 44504443 | 44504273 | ID=cds.MS.gene59283.t1;Parent=MS.gene59283.t1 |
| chr6.4 | exon | 44504658 | 44505025 | 44504658 | ID=MS.gene59283.t1.exon2;Parent=MS.gene59283.t1 |
| chr6.4 | CDS | 44504658 | 44505025 | 44504658 | ID=cds.MS.gene59283.t1;Parent=MS.gene59283.t1 |
| chr6.4 | exon | 44505336 | 44506170 | 44505336 | ID=MS.gene59283.t1.exon3;Parent=MS.gene59283.t1 |
| chr6.4 | CDS | 44505336 | 44506170 | 44505336 | ID=cds.MS.gene59283.t1;Parent=MS.gene59283.t1 |
| Gene Sequence |
| Protein sequence |
