Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060083.t1 | XP_013452408.1 | 95.8 | 400 | 17 | 0 | 2 | 401 | 20 | 419 | 7.30E-232 | 812.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060083.t1 | Q9XIR4 | 64.7 | 388 | 135 | 1 | 16 | 401 | 49 | 436 | 2.6e-161 | 569.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060083.t1 | A0A072UAK1 | 95.8 | 400 | 17 | 0 | 2 | 401 | 20 | 419 | 5.2e-232 | 812.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058142 | MS.gene060083 | 0.825465 | 4.62E-54 | -1.69E-46 |
MS.gene058276 | MS.gene060083 | 0.81937 | 1.20E-52 | -1.69E-46 |
MS.gene060083 | MS.gene060407 | 0.808909 | 2.46E-50 | -1.69E-46 |
MS.gene060083 | MS.gene068127 | 0.821447 | 4.02E-53 | -1.69E-46 |
MS.gene060083 | MS.gene068128 | 0.812207 | 4.76E-51 | -1.69E-46 |
MS.gene060083 | MS.gene073427 | 0.808299 | 3.32E-50 | -1.69E-46 |
MS.gene060083 | MS.gene073579 | 0.810504 | 1.12E-50 | -1.69E-46 |
MS.gene060083 | MS.gene08779 | 0.81249 | 4.13E-51 | -1.69E-46 |
MS.gene060083 | MS.gene09310 | 0.809251 | 2.08E-50 | -1.69E-46 |
MS.gene060083 | MS.gene09558 | 0.802338 | 5.88E-49 | -1.69E-46 |
MS.gene060083 | MS.gene21716 | 0.811545 | 6.64E-51 | -1.69E-46 |
MS.gene060083 | MS.gene21907 | 0.823598 | 1.27E-53 | -1.69E-46 |
MS.gene060083 | MS.gene22504 | 0.804944 | 1.69E-49 | -1.69E-46 |
MS.gene060083 | MS.gene23088 | 0.802046 | 6.75E-49 | -1.69E-46 |
MS.gene060083 | MS.gene24226 | 0.832399 | 9.67E-56 | -1.69E-46 |
MS.gene060083 | MS.gene27009 | 0.840563 | 8.07E-58 | -1.69E-46 |
MS.gene060083 | MS.gene27272 | 0.842075 | 3.23E-58 | -1.69E-46 |
MS.gene060083 | MS.gene29790 | 0.844661 | 6.58E-59 | -1.69E-46 |
MS.gene060083 | MS.gene29791 | 0.851449 | 8.81E-61 | -1.69E-46 |
MS.gene060083 | MS.gene29803 | 0.834909 | 2.28E-56 | -1.69E-46 |
MS.gene060083 | MS.gene34190 | 0.801285 | 9.68E-49 | -1.69E-46 |
MS.gene060083 | MS.gene34191 | 0.805855 | 1.09E-49 | -1.69E-46 |
MS.gene060083 | MS.gene35485 | 0.84456 | 7.01E-59 | -1.69E-46 |
MS.gene060083 | MS.gene35560 | 0.853133 | 2.92E-61 | -1.69E-46 |
MS.gene060083 | MS.gene41217 | 0.810925 | 9.04E-51 | -1.69E-46 |
MS.gene060083 | MS.gene43945 | 0.801565 | 8.48E-49 | -1.69E-46 |
MS.gene060083 | MS.gene45171 | 0.806107 | 9.66E-50 | -1.69E-46 |
MS.gene060083 | MS.gene47072 | 0.807967 | 3.90E-50 | -1.69E-46 |
MS.gene060083 | MS.gene48899 | 0.808094 | 3.67E-50 | -1.69E-46 |
MS.gene060083 | MS.gene53143 | 0.805322 | 1.41E-49 | -1.69E-46 |
MS.gene060083 | MS.gene56100 | 0.836921 | 7.05E-57 | -1.69E-46 |
MS.gene060083 | MS.gene58652 | 0.815862 | 7.44E-52 | -1.69E-46 |
MS.gene060083 | MS.gene58789 | 0.814 | 1.93E-51 | -1.69E-46 |
MS.gene060083 | MS.gene59035 | 0.837886 | 3.99E-57 | -1.69E-46 |
MS.gene060083 | MS.gene59503 | 0.838304 | 3.11E-57 | -1.69E-46 |
MS.gene060083 | MS.gene74594 | 0.811851 | 5.69E-51 | -1.69E-46 |
MS.gene060083 | MS.gene74914 | 0.80653 | 7.87E-50 | -1.69E-46 |
MS.gene060083 | MS.gene76643 | 0.816279 | 6.00E-52 | -1.69E-46 |
MS.gene060083 | MS.gene79020 | 0.802297 | 6.00E-49 | -1.69E-46 |
MS.gene060083 | MS.gene80300 | 0.951315 | 2.65E-109 | -1.69E-46 |
MS.gene060083 | MS.gene82160 | 0.808142 | 3.58E-50 | -1.69E-46 |
MS.gene060083 | MS.gene82939 | 0.813186 | 2.91E-51 | -1.69E-46 |
MS.gene060083 | MS.gene84159 | 0.824447 | 8.03E-54 | -1.69E-46 |
MS.gene060083 | MS.gene90730 | 0.828624 | 8.11E-55 | -1.69E-46 |
MS.gene060083 | MS.gene98291 | 0.847901 | 8.63E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene56984 | MS.gene060083 | PPI |
MS.gene009799 | MS.gene060083 | PPI |
MS.gene50210 | MS.gene060083 | PPI |
MS.gene54153 | MS.gene060083 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060083.t1 | MTR_6g059930 | 95.750 | 400 | 17 | 0 | 2 | 401 | 52 | 451 | 0.0 | 761 |
MS.gene060083.t1 | MTR_6g059930 | 95.750 | 400 | 17 | 0 | 2 | 401 | 20 | 419 | 0.0 | 761 |
MS.gene060083.t1 | MTR_2g088390 | 45.676 | 370 | 197 | 3 | 34 | 401 | 80 | 447 | 9.61e-118 | 350 |
MS.gene060083.t1 | MTR_2g067610 | 47.531 | 324 | 167 | 2 | 79 | 401 | 8 | 329 | 1.26e-108 | 322 |
MS.gene060083.t1 | MTR_5g072520 | 41.695 | 295 | 152 | 3 | 126 | 400 | 2 | 296 | 6.85e-81 | 255 |
MS.gene060083.t1 | MTR_5g072520 | 30.159 | 126 | 87 | 1 | 93 | 217 | 161 | 286 | 1.84e-13 | 72.0 |
MS.gene060083.t1 | MTR_2g088750 | 38.591 | 298 | 154 | 3 | 90 | 387 | 55 | 323 | 2.14e-68 | 220 |
MS.gene060083.t1 | MTR_2g088750 | 27.500 | 120 | 87 | 0 | 261 | 380 | 54 | 173 | 1.81e-12 | 68.6 |
MS.gene060083.t1 | MTR_1g054885 | 53.247 | 77 | 34 | 2 | 321 | 396 | 2 | 77 | 3.46e-19 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060083.t1 | AT1G64810 | 65.206 | 388 | 133 | 2 | 16 | 401 | 73 | 460 | 0.0 | 557 |
MS.gene060083.t1 | AT1G64810 | 65.206 | 388 | 133 | 2 | 16 | 401 | 49 | 436 | 0.0 | 557 |
MS.gene060083.t1 | AT5G57930 | 43.377 | 385 | 212 | 3 | 17 | 400 | 63 | 442 | 1.48e-110 | 332 |
MS.gene060083.t1 | AT5G57930 | 43.377 | 385 | 212 | 3 | 17 | 400 | 60 | 439 | 2.03e-110 | 331 |
MS.gene060083.t1 | AT5G61930 | 43.562 | 365 | 196 | 6 | 40 | 401 | 45 | 402 | 1.14e-102 | 310 |
MS.gene060083.t1 | AT5G61930 | 43.562 | 365 | 196 | 6 | 40 | 401 | 45 | 402 | 1.14e-102 | 310 |
MS.gene060083.t1 | AT3G21740 | 36.700 | 297 | 157 | 2 | 90 | 386 | 55 | 320 | 2.55e-58 | 194 |
MS.gene060083.t1 | AT3G21740 | 29.457 | 129 | 91 | 0 | 252 | 380 | 45 | 173 | 3.38e-14 | 73.6 |
Find 119 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGCGGGAAATCGACATTT+TGG | 0.188456 | 6.2:-68383543 | None:intergenic |
CTAACATGCCACACGTAATT+TGG | 0.213116 | 6.2:-68384751 | None:intergenic |
AGCCTGTTTGATTTGTTTAA+AGG | 0.228852 | 6.2:-68383602 | None:intergenic |
GGAACAAGCAATCCATTCTT+TGG | 0.306524 | 6.2:-68383679 | None:intergenic |
TTGCATGTCATTCCTGCATA+TGG | 0.315621 | 6.2:+68383772 | MS.gene060083:CDS |
TTGATTTGTTTAAAGGGAAT+AGG | 0.347331 | 6.2:-68383595 | None:intergenic |
GCTGCGTTGAAGAGATATTA+TGG | 0.350367 | 6.2:+68384799 | MS.gene060083:CDS |
TGACAGAGGCGGACATTTAG+AGG | 0.357152 | 6.2:+68384414 | MS.gene060083:CDS |
TATCATCTCTTTGACCCATT+TGG | 0.357302 | 6.2:+68384247 | MS.gene060083:CDS |
TGATTTGTTTAAAGGGAATA+GGG | 0.359796 | 6.2:-68383594 | None:intergenic |
GCCTGTTTGATTTGTTTAAA+GGG | 0.365584 | 6.2:-68383601 | None:intergenic |
ATAGTTCTCATGCTTGGGTC+AGG | 0.375929 | 6.2:+68384188 | MS.gene060083:CDS |
TGCATAATGCGCTTACCAAA+TGG | 0.376615 | 6.2:-68384262 | None:intergenic |
TCCCTTTAAACAAATCAAAC+AGG | 0.403204 | 6.2:+68383600 | MS.gene060083:CDS |
GTGGATCATTTAAGCATCAA+TGG | 0.408425 | 6.2:+68384677 | MS.gene060083:CDS |
TGGCATGTTAGAGACATTAA+TGG | 0.410621 | 6.2:+68384763 | MS.gene060083:CDS |
TTCGTACGGGATTTGTCCTT+CGG | 0.414111 | 6.2:-68384372 | None:intergenic |
CTCATGAAGTATTTGATGCT+TGG | 0.427194 | 6.2:+68383719 | MS.gene060083:CDS |
CAGGAATGACATGCAAAAGC+TGG | 0.432380 | 6.2:-68383765 | None:intergenic |
CTTCATGAGCAACGGGAACT+AGG | 0.441984 | 6.2:-68383705 | None:intergenic |
TGCATATCAAATAGTTAGAA+AGG | 0.444834 | 6.2:+68384561 | MS.gene060083:CDS |
CCTCTTGAACCTCCAAAGAA+TGG | 0.447913 | 6.2:+68383667 | MS.gene060083:CDS |
TTCCCGCCAAAGTTGCCAAA+AGG | 0.457458 | 6.2:+68383556 | MS.gene060083:CDS |
GGAGGTTCATGTTGGACCGT+GGG | 0.464550 | 6.2:+68384636 | MS.gene060083:CDS |
TGTTTAAAGGGAATAGGGTA+TGG | 0.466391 | 6.2:-68383589 | None:intergenic |
TCAAGCCGGCGTGGATATCC+CGG | 0.472145 | 6.2:+68384336 | MS.gene060083:CDS |
GCATAATGCGCTTACCAAAT+GGG | 0.472311 | 6.2:-68384261 | None:intergenic |
ACGTCATAGTTCTCATGCTT+GGG | 0.473814 | 6.2:+68384183 | MS.gene060083:CDS |
CGTCTCCACACAAATTCGTC+AGG | 0.475595 | 6.2:-68383508 | None:intergenic |
TCTCTTCAACGCAGCCGTGA+TGG | 0.477116 | 6.2:-68384791 | None:intergenic |
TCAAATACTTCATGAGCAAC+GGG | 0.479703 | 6.2:-68383712 | None:intergenic |
CTCTTCAACGCAGCCGTGAT+GGG | 0.482385 | 6.2:-68384790 | None:intergenic |
CACGTCATAGTTCTCATGCT+TGG | 0.482980 | 6.2:+68384182 | MS.gene060083:CDS |
ATTCCCGCCTCATCTGTGTC+TGG | 0.482983 | 6.2:-68384913 | None:intergenic |
GCTCAACAACAGCTGGAATC+CGG | 0.485227 | 6.2:-68384306 | None:intergenic |
TAGTTCTCATGCTTGGGTCA+GGG | 0.486077 | 6.2:+68384189 | MS.gene060083:CDS |
GGTCACAATGCAAAGCTTTG+TGG | 0.487513 | 6.2:+68384658 | MS.gene060083:CDS |
AAGTGTAGATCGGCATTACC+TGG | 0.487530 | 6.2:+68383454 | MS.gene060083:CDS |
GGATTTGTCCTTCGGCGGGA+TGG | 0.487968 | 6.2:-68384364 | None:intergenic |
TACGGGATTTGTCCTTCGGC+GGG | 0.489443 | 6.2:-68384368 | None:intergenic |
TCCCGCCAAAGTTGCCAAAA+GGG | 0.490337 | 6.2:+68383557 | MS.gene060083:CDS |
GACTTTGATACTTACCGAGC+TGG | 0.500611 | 6.2:+68384478 | MS.gene060083:CDS |
CGATTTCTGCAGTGAATGCT+CGG | 0.504459 | 6.2:+68384099 | MS.gene060083:intron |
GCAAGCTGGTGCACGTATAC+CGG | 0.508230 | 6.2:+68384852 | MS.gene060083:CDS |
CCATTCTTTGGAGGTTCAAG+AGG | 0.510935 | 6.2:-68383667 | None:intergenic |
AGATGGAAAACATGGTTGGC+AGG | 0.511785 | 6.2:+68384702 | MS.gene060083:CDS |
ATGCAGAGCTCAACAACAGC+TGG | 0.512811 | 6.2:-68384313 | None:intergenic |
AAGAGATGATATGACTCAAT+CGG | 0.515946 | 6.2:-68384235 | None:intergenic |
ATCAAATACTTCATGAGCAA+CGG | 0.518555 | 6.2:-68383713 | None:intergenic |
GAGTAATACTTTGTGCCAAT+CGG | 0.519093 | 6.2:+68383476 | MS.gene060083:CDS |
TCTCCTCCCTACCATTCGTA+CGG | 0.519425 | 6.2:-68384386 | None:intergenic |
TGAGCAACGGGAACTAGGTC+AGG | 0.519988 | 6.2:-68383700 | None:intergenic |
AGAACTATGACGTGTTGAAC+TGG | 0.520026 | 6.2:-68384173 | None:intergenic |
AGTTCTCATGCTTGGGTCAG+GGG | 0.522088 | 6.2:+68384190 | MS.gene060083:CDS |
TTGCACACAAACTTCTACTA+CGG | 0.527595 | 6.2:-68384833 | None:intergenic |
GGAAAGAAAACTTGCTAGCA+AGG | 0.530795 | 6.2:+68383633 | MS.gene060083:CDS |
ACAAGCAATCCATTCTTTGG+AGG | 0.530814 | 6.2:-68383676 | None:intergenic |
CTTCGGCGGGATGGATACTC+CGG | 0.532934 | 6.2:-68384355 | None:intergenic |
ACGTCTGACAACGGTGGAGG+GGG | 0.534026 | 6.2:-68384511 | None:intergenic |
GGTACGTCTGACAACGGTGG+AGG | 0.534438 | 6.2:-68384514 | None:intergenic |
GAAGTACATGTGGCTCAGAC+TGG | 0.537083 | 6.2:+68384121 | MS.gene060083:CDS |
ACGGCCTTCACAATCTAGAA+TGG | 0.542451 | 6.2:-68384149 | None:intergenic |
CTCCTCCCTACCATTCGTAC+GGG | 0.543645 | 6.2:-68384385 | None:intergenic |
ACAAATCCCGTACGAATGGT+AGG | 0.543894 | 6.2:+68384379 | MS.gene060083:CDS |
CGGAGGTTCATGTTGGACCG+TGG | 0.546022 | 6.2:+68384635 | MS.gene060083:CDS |
ATCAACGGCTTGTACTCGTC+CGG | 0.547415 | 6.2:-68384871 | None:intergenic |
AATCAAACAGGCTGCAAAGA+CGG | 0.548813 | 6.2:+68383612 | MS.gene060083:CDS |
GTTGAGCTCTGCATTCAAGC+CGG | 0.549404 | 6.2:+68384322 | MS.gene060083:CDS |
TATTGCTCGGAGGTTCATGT+TGG | 0.552092 | 6.2:+68384628 | MS.gene060083:CDS |
CAATGGAGAGATGGAAAACA+TGG | 0.554191 | 6.2:+68384694 | MS.gene060083:CDS |
GTGTACCTACAGCCATATGC+AGG | 0.556756 | 6.2:-68383784 | None:intergenic |
GAAAGCATGCGGTTATTGCT+CGG | 0.560639 | 6.2:+68384615 | MS.gene060083:CDS |
GCATATCAAATAGTTAGAAA+GGG | 0.563121 | 6.2:+68384562 | MS.gene060083:CDS |
ACACAAACTTCTACTACGGC+AGG | 0.565853 | 6.2:-68384829 | None:intergenic |
TTTAAGCATCAATGGAGAGA+TGG | 0.566672 | 6.2:+68384685 | MS.gene060083:CDS |
TACGTCTGACAACGGTGGAG+GGG | 0.567599 | 6.2:-68384512 | None:intergenic |
GTCAGGTCTAAGCTTCCGAT+TGG | 0.569871 | 6.2:-68383491 | None:intergenic |
ACATGCCACACGTAATTTGG+AGG | 0.570824 | 6.2:-68384748 | None:intergenic |
TGCAGAATTCTCTTCTGTCA+TGG | 0.573385 | 6.2:+68384456 | MS.gene060083:CDS |
CGGAGTATCCATCCCGCCGA+AGG | 0.584679 | 6.2:+68384356 | MS.gene060083:CDS |
ACAATTCAACAAGTGTAGAT+CGG | 0.588302 | 6.2:+68383444 | MS.gene060083:CDS |
TCATTCCTGCATATGGCTGT+AGG | 0.588472 | 6.2:+68383779 | MS.gene060083:CDS |
AGGAATGACATGCAAAAGCT+GGG | 0.589239 | 6.2:-68383764 | None:intergenic |
TCTGCAGCGTGCAACGACTT+AGG | 0.591342 | 6.2:-68384439 | None:intergenic |
AAGGACAAATCCCGTACGAA+TGG | 0.592295 | 6.2:+68384375 | MS.gene060083:CDS |
GGAGAGATGGAAAACATGGT+TGG | 0.592522 | 6.2:+68384698 | MS.gene060083:CDS |
ATACGCGGTTTGAATATGAC+CGG | 0.594381 | 6.2:+68384287 | MS.gene060083:CDS |
TTCAACGCAGCCGTGATGGG+AGG | 0.603188 | 6.2:-68384787 | None:intergenic |
AGCTTTGCATTGTGACCCCA+CGG | 0.605815 | 6.2:-68384652 | None:intergenic |
TATGACGTGTTGAACTGGTA+CGG | 0.605983 | 6.2:-68384168 | None:intergenic |
CAAATCCCGTACGAATGGTA+GGG | 0.608289 | 6.2:+68384380 | MS.gene060083:CDS |
ATTCCAGACACAGATGAGGC+GGG | 0.610636 | 6.2:+68384910 | MS.gene060083:CDS |
GTACGGGATTTGTCCTTCGG+CGG | 0.615282 | 6.2:-68384369 | None:intergenic |
GTACGTCTGACAACGGTGGA+GGG | 0.615937 | 6.2:-68384513 | None:intergenic |
TTCGGCGGGATGGATACTCC+GGG | 0.618728 | 6.2:-68384354 | None:intergenic |
TTGGCACAAAGTATTACTCC+AGG | 0.619449 | 6.2:-68383472 | None:intergenic |
CACTCCATTCTAGATTGTGA+AGG | 0.624567 | 6.2:+68384145 | MS.gene060083:CDS |
ACGAGTACAAGCCGTTGATG+AGG | 0.627677 | 6.2:+68384875 | MS.gene060083:CDS |
ACAATATCAAGCCTCATCAA+CGG | 0.629198 | 6.2:-68384886 | None:intergenic |
GGGGAAATCGATCACCAGCT+CGG | 0.633708 | 6.2:-68384492 | None:intergenic |
AATTCCAGACACAGATGAGG+CGG | 0.641140 | 6.2:+68384909 | MS.gene060083:CDS |
CATTAATGGACCTCCCATCA+CGG | 0.643796 | 6.2:+68384777 | MS.gene060083:CDS |
ATCCCGTACGAATGGTAGGG+AGG | 0.647760 | 6.2:+68384383 | MS.gene060083:CDS |
GTAGAAGTTTGTGTGCAAGC+TGG | 0.651785 | 6.2:+68384838 | MS.gene060083:CDS |
TGAATGCTCGGAAGTACATG+TGG | 0.653362 | 6.2:+68384111 | MS.gene060083:CDS |
GTTGAAGAGATATTATGGAA+AGG | 0.653812 | 6.2:+68384804 | MS.gene060083:CDS |
GAAAGAAAACTTGCTAGCAA+GGG | 0.657753 | 6.2:+68383634 | MS.gene060083:CDS |
AAATACACGGTGAAAGCATG+CGG | 0.672006 | 6.2:+68384604 | MS.gene060083:CDS |
TGTAATTCCAGACACAGATG+AGG | 0.676525 | 6.2:+68384906 | MS.gene060083:CDS |
GGGAGGAGAGTACTTGACAG+AGG | 0.676607 | 6.2:+68384400 | MS.gene060083:CDS |
GAGGTTCATGTTGGACCGTG+GGG | 0.679811 | 6.2:+68384637 | MS.gene060083:CDS |
GCTCTGCATTCAAGCCGGCG+TGG | 0.681643 | 6.2:+68384327 | MS.gene060083:CDS |
AGGAGAGTACTTGACAGAGG+CGG | 0.682036 | 6.2:+68384403 | MS.gene060083:CDS |
TTAGACCTGACGAATTTGTG+TGG | 0.683473 | 6.2:+68383503 | MS.gene060083:CDS |
AGCATGCGGTTATTGCTCGG+AGG | 0.699987 | 6.2:+68384618 | MS.gene060083:CDS |
TTAGGTACGTCTGACAACGG+TGG | 0.710969 | 6.2:-68384517 | None:intergenic |
AGCGCATTATGCATGATACG+CGG | 0.717266 | 6.2:+68384272 | MS.gene060083:CDS |
GAAGTTGATGAAGAAATACA+CGG | 0.719815 | 6.2:+68384591 | MS.gene060083:CDS |
ATACTCCGGGATATCCACGC+CGG | 0.731710 | 6.2:-68384341 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTTTAATACTGATGC+AGG | + | chr6.2:68384057-68384076 | MS.gene060083:intron | 20.0% |
! | AAAGATAAACTATTGAGAAG+GGG | - | chr6.2:68383400-68383419 | None:intergenic | 25.0% |
! | AATCATCGAGAAAAATAAAC+CGG | + | chr6.2:68383886-68383905 | MS.gene060083:intron | 25.0% |
! | ACAAAGATAAACTATTGAGA+AGG | - | chr6.2:68383402-68383421 | None:intergenic | 25.0% |
! | CAAAGATAAACTATTGAGAA+GGG | - | chr6.2:68383401-68383420 | None:intergenic | 25.0% |
! | CATAATATTCGAGAATTGTT+TGG | - | chr6.2:68383349-68383368 | None:intergenic | 25.0% |
! | GCATATCAAATAGTTAGAAA+GGG | + | chr6.2:68384562-68384581 | MS.gene060083:CDS | 25.0% |
! | TGCATATCAAATAGTTAGAA+AGG | + | chr6.2:68384561-68384580 | MS.gene060083:CDS | 25.0% |
!! | ATAGTTTCTTGAGCAATTTT+AGG | - | chr6.2:68384538-68384557 | None:intergenic | 25.0% |
!! | ATTTTTCTCACAAACCATAA+TGG | - | chr6.2:68383853-68383872 | None:intergenic | 25.0% |
!!! | TGAGTCTTTACTCTTTTTTT+TGG | + | chr6.2:68384002-68384021 | MS.gene060083:intron | 25.0% |
!!! | TGATTTGTTTAAAGGGAATA+GGG | - | chr6.2:68383597-68383616 | None:intergenic | 25.0% |
!!! | TTGATTTGTTTAAAGGGAAT+AGG | - | chr6.2:68383598-68383617 | None:intergenic | 25.0% |
!!! | TTTTTTAGTGAAGACCATTA+TGG | + | chr6.2:68383836-68383855 | MS.gene060083:intron | 25.0% |
AAAACAAATGCAACGAAACT+TGG | - | chr6.2:68384035-68384054 | None:intergenic | 30.0% | |
AAAAGAGTAAAGACTCATTG+TGG | - | chr6.2:68383999-68384018 | None:intergenic | 30.0% | |
AAGAGATGATATGACTCAAT+CGG | - | chr6.2:68384238-68384257 | None:intergenic | 30.0% | |
ACAATTCAACAAGTGTAGAT+CGG | + | chr6.2:68383444-68383463 | MS.gene060083:CDS | 30.0% | |
ATCAAATACTTCATGAGCAA+CGG | - | chr6.2:68383716-68383735 | None:intergenic | 30.0% | |
ATCATCGAGAAAAATAAACC+GGG | + | chr6.2:68383887-68383906 | MS.gene060083:intron | 30.0% | |
ATCTCAATTTAACCAGGTTT+CGG | - | chr6.2:68383273-68383292 | None:intergenic | 30.0% | |
GCAAAAAGGAATCAAAAGTA+GGG | + | chr6.2:68383323-68383342 | MS.gene060083:intron | 30.0% | |
GTTGAAGAGATATTATGGAA+AGG | + | chr6.2:68384804-68384823 | MS.gene060083:CDS | 30.0% | |
TATGCTCAAGGATTTGAATT+GGG | - | chr6.2:68383239-68383258 | None:intergenic | 30.0% | |
TCCCTTTAAACAAATCAAAC+AGG | + | chr6.2:68383600-68383619 | MS.gene060083:CDS | 30.0% | |
TTATGCTCAAGGATTTGAAT+TGG | - | chr6.2:68383240-68383259 | None:intergenic | 30.0% | |
TTGAACATCTCAATTTAACC+AGG | - | chr6.2:68383279-68383298 | None:intergenic | 30.0% | |
!! | AGCCTGTTTGATTTGTTTAA+AGG | - | chr6.2:68383605-68383624 | None:intergenic | 30.0% |
!! | ATTTCGAGTTTAGTTCAAGT+AGG | - | chr6.2:68383924-68383943 | None:intergenic | 30.0% |
!! | GAAGTTGATGAAGAAATACA+CGG | + | chr6.2:68384591-68384610 | MS.gene060083:CDS | 30.0% |
!! | GCCTGTTTGATTTGTTTAAA+GGG | - | chr6.2:68383604-68383623 | None:intergenic | 30.0% |
!! | TTTCGAGTTTAGTTCAAGTA+GGG | - | chr6.2:68383923-68383942 | None:intergenic | 30.0% |
AAACATGTCACATTAGAAGG+TGG | + | chr6.2:68383301-68383320 | MS.gene060083:intron | 35.0% | |
AAATCCTTGAGCATAAACGT+TGG | + | chr6.2:68383244-68383263 | MS.gene060083:intron | 35.0% | |
AAGTAGGGATTAAATTGTCC+CGG | - | chr6.2:68383908-68383927 | None:intergenic | 35.0% | |
ACAATATCAAGCCTCATCAA+CGG | - | chr6.2:68384889-68384908 | None:intergenic | 35.0% | |
ACGAAACATGTCACATTAGA+AGG | + | chr6.2:68383298-68383317 | MS.gene060083:intron | 35.0% | |
ACTAGAAGATAAGCACAGTA+TGG | - | chr6.2:68383809-68383828 | None:intergenic | 35.0% | |
ATAATGTTCTGCTACTGCTA+GGG | + | chr6.2:68383947-68383966 | MS.gene060083:intron | 35.0% | |
GAGTAATACTTTGTGCCAAT+CGG | + | chr6.2:68383476-68383495 | MS.gene060083:CDS | 35.0% | |
GGCAAAAAGGAATCAAAAGT+AGG | + | chr6.2:68383322-68383341 | MS.gene060083:intron | 35.0% | |
GTGGATCATTTAAGCATCAA+TGG | + | chr6.2:68384677-68384696 | MS.gene060083:CDS | 35.0% | |
TATCATCTCTTTGACCCATT+TGG | + | chr6.2:68384247-68384266 | MS.gene060083:CDS | 35.0% | |
TCAAATACTTCATGAGCAAC+GGG | - | chr6.2:68383715-68383734 | None:intergenic | 35.0% | |
TGGCATGTTAGAGACATTAA+TGG | + | chr6.2:68384763-68384782 | MS.gene060083:CDS | 35.0% | |
TGTTTAAAGGGAATAGGGTA+TGG | - | chr6.2:68383592-68383611 | None:intergenic | 35.0% | |
TTGCACACAAACTTCTACTA+CGG | - | chr6.2:68384836-68384855 | None:intergenic | 35.0% | |
TTTAAGCATCAATGGAGAGA+TGG | + | chr6.2:68384685-68384704 | MS.gene060083:CDS | 35.0% | |
! | CTCATGAAGTATTTGATGCT+TGG | + | chr6.2:68383719-68383738 | MS.gene060083:CDS | 35.0% |
! | TTTTACCTCCAAATTACGTG+TGG | + | chr6.2:68384743-68384762 | MS.gene060083:CDS | 35.0% |
!! | ATTTTAGGTACGTCTGACAA+CGG | - | chr6.2:68384523-68384542 | None:intergenic | 35.0% |
!! | GAAAGAAAACTTGCTAGCAA+GGG | + | chr6.2:68383634-68383653 | MS.gene060083:CDS | 35.0% |
!! | GCTTGGAAGCTTTTGATTAA+AGG | + | chr6.2:68383736-68383755 | MS.gene060083:CDS | 35.0% |
!! | TATGGCTTTTTCTTCCCTTT+TGG | - | chr6.2:68383574-68383593 | None:intergenic | 35.0% |
AATCAAACAGGCTGCAAAGA+CGG | + | chr6.2:68383612-68383631 | MS.gene060083:CDS | 40.0% | |
ACAAGCAATCCATTCTTTGG+AGG | - | chr6.2:68383679-68383698 | None:intergenic | 40.0% | |
ACGTCATAGTTCTCATGCTT+GGG | + | chr6.2:68384183-68384202 | MS.gene060083:CDS | 40.0% | |
AGAACTATGACGTGTTGAAC+TGG | - | chr6.2:68384176-68384195 | None:intergenic | 40.0% | |
AGGAATGACATGCAAAAGCT+GGG | - | chr6.2:68383767-68383786 | None:intergenic | 40.0% | |
ATACGCGGTTTGAATATGAC+CGG | + | chr6.2:68384287-68384306 | MS.gene060083:CDS | 40.0% | |
ATTGTGGTCCTGGAGAAAAT+GGG | - | chr6.2:68383983-68384002 | None:intergenic | 40.0% | |
CAATGGAGAGATGGAAAACA+TGG | + | chr6.2:68384694-68384713 | MS.gene060083:CDS | 40.0% | |
CACATTAGAAGGTGGCAAAA+AGG | + | chr6.2:68383309-68383328 | MS.gene060083:intron | 40.0% | |
CACTCCATTCTAGATTGTGA+AGG | + | chr6.2:68384145-68384164 | MS.gene060083:CDS | 40.0% | |
CATAATGTTCTGCTACTGCT+AGG | + | chr6.2:68383946-68383965 | MS.gene060083:intron | 40.0% | |
CTAACATGCCACACGTAATT+TGG | - | chr6.2:68384754-68384773 | None:intergenic | 40.0% | |
CTGGAGAAAATGGGATAACT+TGG | - | chr6.2:68383974-68383993 | None:intergenic | 40.0% | |
GAAACCAACGTTTATGCTCA+AGG | - | chr6.2:68383251-68383270 | None:intergenic | 40.0% | |
GCATAATGCGCTTACCAAAT+GGG | - | chr6.2:68384264-68384283 | None:intergenic | 40.0% | |
GCTGCGTTGAAGAGATATTA+TGG | + | chr6.2:68384799-68384818 | MS.gene060083:CDS | 40.0% | |
GGAACAAGCAATCCATTCTT+TGG | - | chr6.2:68383682-68383701 | None:intergenic | 40.0% | |
TATGACGTGTTGAACTGGTA+CGG | - | chr6.2:68384171-68384190 | None:intergenic | 40.0% | |
TGCAGAATTCTCTTCTGTCA+TGG | + | chr6.2:68384456-68384475 | MS.gene060083:CDS | 40.0% | |
TGCATAATGCGCTTACCAAA+TGG | - | chr6.2:68384265-68384284 | None:intergenic | 40.0% | |
TGTAATTCCAGACACAGATG+AGG | + | chr6.2:68384906-68384925 | MS.gene060083:CDS | 40.0% | |
TTAGACCTGACGAATTTGTG+TGG | + | chr6.2:68383503-68383522 | MS.gene060083:CDS | 40.0% | |
TTGCATGTCATTCCTGCATA+TGG | + | chr6.2:68383772-68383791 | MS.gene060083:CDS | 40.0% | |
! | AAATACACGGTGAAAGCATG+CGG | + | chr6.2:68384604-68384623 | MS.gene060083:CDS | 40.0% |
! | CAAGTTATCCCATTTTCTCC+AGG | + | chr6.2:68383972-68383991 | MS.gene060083:intron | 40.0% |
! | TTCTTCCCTTTTGGCAACTT+TGG | - | chr6.2:68383565-68383584 | None:intergenic | 40.0% |
! | TTGGCACAAAGTATTACTCC+AGG | - | chr6.2:68383475-68383494 | None:intergenic | 40.0% |
!! | GGAAAGAAAACTTGCTAGCA+AGG | + | chr6.2:68383633-68383652 | MS.gene060083:CDS | 40.0% |
AAGGACAAATCCCGTACGAA+TGG | + | chr6.2:68384375-68384394 | MS.gene060083:CDS | 45.0% | |
AAGTGTAGATCGGCATTACC+TGG | + | chr6.2:68383454-68383473 | MS.gene060083:CDS | 45.0% | |
AATTCCAGACACAGATGAGG+CGG | + | chr6.2:68384909-68384928 | MS.gene060083:CDS | 45.0% | |
ACAAATCCCGTACGAATGGT+AGG | + | chr6.2:68384379-68384398 | MS.gene060083:CDS | 45.0% | |
ACACAAACTTCTACTACGGC+AGG | - | chr6.2:68384832-68384851 | None:intergenic | 45.0% | |
ACATGCCACACGTAATTTGG+AGG | - | chr6.2:68384751-68384770 | None:intergenic | 45.0% | |
ACGGCCTTCACAATCTAGAA+TGG | - | chr6.2:68384152-68384171 | None:intergenic | 45.0% | |
AGATGGAAAACATGGTTGGC+AGG | + | chr6.2:68384702-68384721 | MS.gene060083:CDS | 45.0% | |
AGCGCATTATGCATGATACG+CGG | + | chr6.2:68384272-68384291 | MS.gene060083:CDS | 45.0% | |
ATAGTTCTCATGCTTGGGTC+AGG | + | chr6.2:68384188-68384207 | MS.gene060083:CDS | 45.0% | |
CAAATCCCGTACGAATGGTA+GGG | + | chr6.2:68384380-68384399 | MS.gene060083:CDS | 45.0% | |
CACGTCATAGTTCTCATGCT+TGG | + | chr6.2:68384182-68384201 | MS.gene060083:CDS | 45.0% | |
CAGGAATGACATGCAAAAGC+TGG | - | chr6.2:68383768-68383787 | None:intergenic | 45.0% | |
CATTGTGGTCCTGGAGAAAA+TGG | - | chr6.2:68383984-68384003 | None:intergenic | 45.0% | |
CCTCTTGAACCTCCAAAGAA+TGG | + | chr6.2:68383667-68383686 | MS.gene060083:CDS | 45.0% | |
CGATTTCTGCAGTGAATGCT+CGG | + | chr6.2:68384099-68384118 | MS.gene060083:intron | 45.0% | |
GACTTTGATACTTACCGAGC+TGG | + | chr6.2:68384478-68384497 | MS.gene060083:CDS | 45.0% | |
GGAGAGATGGAAAACATGGT+TGG | + | chr6.2:68384698-68384717 | MS.gene060083:CDS | 45.0% | |
GGTCACAATGCAAAGCTTTG+TGG | + | chr6.2:68384658-68384677 | MS.gene060083:CDS | 45.0% | |
GTAAAGACTCATTGTGGTCC+TGG | - | chr6.2:68383993-68384012 | None:intergenic | 45.0% | |
GTAGAAGTTTGTGTGCAAGC+TGG | + | chr6.2:68384838-68384857 | MS.gene060083:CDS | 45.0% | |
TAGTTCTCATGCTTGGGTCA+GGG | + | chr6.2:68384189-68384208 | MS.gene060083:CDS | 45.0% | |
TATTGCTCGGAGGTTCATGT+TGG | + | chr6.2:68384628-68384647 | MS.gene060083:CDS | 45.0% | |
TCATTCCTGCATATGGCTGT+AGG | + | chr6.2:68383779-68383798 | MS.gene060083:CDS | 45.0% | |
TTCGTACGGGATTTGTCCTT+CGG | - | chr6.2:68384375-68384394 | None:intergenic | 45.0% | |
! | CATTAATGGACCTCCCATCA+CGG | + | chr6.2:68384777-68384796 | MS.gene060083:CDS | 45.0% |
! | CCATTCTTTGGAGGTTCAAG+AGG | - | chr6.2:68383670-68383689 | None:intergenic | 45.0% |
! | GAAAGCATGCGGTTATTGCT+CGG | + | chr6.2:68384615-68384634 | MS.gene060083:CDS | 45.0% |
! | TGAATGCTCGGAAGTACATG+TGG | + | chr6.2:68384111-68384130 | MS.gene060083:CDS | 45.0% |
! | TGGCGGGAAATCGACATTTT+GGG | - | chr6.2:68383545-68383564 | None:intergenic | 45.0% |
! | TTCCCTTTTGGCAACTTTGG+CGG | - | chr6.2:68383562-68383581 | None:intergenic | 45.0% |
! | TTGGCGGGAAATCGACATTT+TGG | - | chr6.2:68383546-68383565 | None:intergenic | 45.0% |
!! | AAACGTTGGTTTCCGAAACC+TGG | + | chr6.2:68383258-68383277 | MS.gene060083:intron | 45.0% |
ACGAGTACAAGCCGTTGATG+AGG | + | chr6.2:68384875-68384894 | MS.gene060083:CDS | 50.0% | |
AGCTTTGCATTGTGACCCCA+CGG | - | chr6.2:68384655-68384674 | None:intergenic | 50.0% | |
AGTTCTCATGCTTGGGTCAG+GGG | + | chr6.2:68384190-68384209 | MS.gene060083:CDS | 50.0% | |
ATCAACGGCTTGTACTCGTC+CGG | - | chr6.2:68384874-68384893 | None:intergenic | 50.0% | |
ATGCAGAGCTCAACAACAGC+TGG | - | chr6.2:68384316-68384335 | None:intergenic | 50.0% | |
ATTCCAGACACAGATGAGGC+GGG | + | chr6.2:68384910-68384929 | MS.gene060083:CDS | 50.0% | |
CGTCTCCACACAAATTCGTC+AGG | - | chr6.2:68383511-68383530 | None:intergenic | 50.0% | |
CTTCATGAGCAACGGGAACT+AGG | - | chr6.2:68383708-68383727 | None:intergenic | 50.0% | |
GAAGTACATGTGGCTCAGAC+TGG | + | chr6.2:68384121-68384140 | MS.gene060083:CDS | 50.0% | |
GCTCAACAACAGCTGGAATC+CGG | - | chr6.2:68384309-68384328 | None:intergenic | 50.0% | |
GTCAGGTCTAAGCTTCCGAT+TGG | - | chr6.2:68383494-68383513 | None:intergenic | 50.0% | |
GTGTACCTACAGCCATATGC+AGG | - | chr6.2:68383787-68383806 | None:intergenic | 50.0% | |
GTTGAGCTCTGCATTCAAGC+CGG | + | chr6.2:68384322-68384341 | MS.gene060083:CDS | 50.0% | |
TCCCGCCAAAGTTGCCAAAA+GGG | + | chr6.2:68383557-68383576 | MS.gene060083:CDS | 50.0% | |
TCTCCTCCCTACCATTCGTA+CGG | - | chr6.2:68384389-68384408 | None:intergenic | 50.0% | |
TGACAGAGGCGGACATTTAG+AGG | + | chr6.2:68384414-68384433 | MS.gene060083:CDS | 50.0% | |
TTAGGTACGTCTGACAACGG+TGG | - | chr6.2:68384520-68384539 | None:intergenic | 50.0% | |
TTCCCGCCAAAGTTGCCAAA+AGG | + | chr6.2:68383556-68383575 | MS.gene060083:CDS | 50.0% | |
! | TCCCTTTTGGCAACTTTGGC+GGG | - | chr6.2:68383561-68383580 | None:intergenic | 50.0% |
!! | AGGAGAGTACTTGACAGAGG+CGG | + | chr6.2:68384403-68384422 | MS.gene060083:CDS | 50.0% |
AGCATGCGGTTATTGCTCGG+AGG | + | chr6.2:68384618-68384637 | MS.gene060083:CDS | 55.0% | |
ATACTCCGGGATATCCACGC+CGG | - | chr6.2:68384344-68384363 | None:intergenic | 55.0% | |
ATCCCGTACGAATGGTAGGG+AGG | + | chr6.2:68384383-68384402 | MS.gene060083:CDS | 55.0% | |
ATTCCCGCCTCATCTGTGTC+TGG | - | chr6.2:68384916-68384935 | None:intergenic | 55.0% | |
CTCCTCCCTACCATTCGTAC+GGG | - | chr6.2:68384388-68384407 | None:intergenic | 55.0% | |
CTCTTCAACGCAGCCGTGAT+GGG | - | chr6.2:68384793-68384812 | None:intergenic | 55.0% | |
GAGGTTCATGTTGGACCGTG+GGG | + | chr6.2:68384637-68384656 | MS.gene060083:CDS | 55.0% | |
GCAAGCTGGTGCACGTATAC+CGG | + | chr6.2:68384852-68384871 | MS.gene060083:CDS | 55.0% | |
GGAGGTTCATGTTGGACCGT+GGG | + | chr6.2:68384636-68384655 | MS.gene060083:CDS | 55.0% | |
GGGGAAATCGATCACCAGCT+CGG | - | chr6.2:68384495-68384514 | None:intergenic | 55.0% | |
GTACGGGATTTGTCCTTCGG+CGG | - | chr6.2:68384372-68384391 | None:intergenic | 55.0% | |
GTACGTCTGACAACGGTGGA+GGG | - | chr6.2:68384516-68384535 | None:intergenic | 55.0% | |
TACGGGATTTGTCCTTCGGC+GGG | - | chr6.2:68384371-68384390 | None:intergenic | 55.0% | |
TACGTCTGACAACGGTGGAG+GGG | - | chr6.2:68384515-68384534 | None:intergenic | 55.0% | |
TCTCTTCAACGCAGCCGTGA+TGG | - | chr6.2:68384794-68384813 | None:intergenic | 55.0% | |
TCTGCAGCGTGCAACGACTT+AGG | - | chr6.2:68384442-68384461 | None:intergenic | 55.0% | |
TGAGCAACGGGAACTAGGTC+AGG | - | chr6.2:68383703-68383722 | None:intergenic | 55.0% | |
!! | GGGAGGAGAGTACTTGACAG+AGG | + | chr6.2:68384400-68384419 | MS.gene060083:CDS | 55.0% |
ACGTCTGACAACGGTGGAGG+GGG | - | chr6.2:68384514-68384533 | None:intergenic | 60.0% | |
CGGAGGTTCATGTTGGACCG+TGG | + | chr6.2:68384635-68384654 | MS.gene060083:CDS | 60.0% | |
CTTCGGCGGGATGGATACTC+CGG | - | chr6.2:68384358-68384377 | None:intergenic | 60.0% | |
GGATTTGTCCTTCGGCGGGA+TGG | - | chr6.2:68384367-68384386 | None:intergenic | 60.0% | |
GGTACGTCTGACAACGGTGG+AGG | - | chr6.2:68384517-68384536 | None:intergenic | 60.0% | |
TCAAGCCGGCGTGGATATCC+CGG | + | chr6.2:68384336-68384355 | MS.gene060083:CDS | 60.0% | |
TTCGGCGGGATGGATACTCC+GGG | - | chr6.2:68384357-68384376 | None:intergenic | 60.0% | |
! | TTCAACGCAGCCGTGATGGG+AGG | - | chr6.2:68384790-68384809 | None:intergenic | 60.0% |
GCTCTGCATTCAAGCCGGCG+TGG | + | chr6.2:68384327-68384346 | MS.gene060083:CDS | 65.0% | |
! | CGGAGTATCCATCCCGCCGA+AGG | + | chr6.2:68384356-68384375 | MS.gene060083:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 68383219 | 68384945 | 68383219 | ID=MS.gene060083 |
chr6.2 | mRNA | 68383219 | 68384945 | 68383219 | ID=MS.gene060083.t1;Parent=MS.gene060083 |
chr6.2 | exon | 68383219 | 68383221 | 68383219 | ID=MS.gene060083.t1.exon1;Parent=MS.gene060083.t1 |
chr6.2 | CDS | 68383219 | 68383221 | 68383219 | ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1 |
chr6.2 | exon | 68383433 | 68383800 | 68383433 | ID=MS.gene060083.t1.exon2;Parent=MS.gene060083.t1 |
chr6.2 | CDS | 68383433 | 68383800 | 68383433 | ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1 |
chr6.2 | exon | 68384111 | 68384945 | 68384111 | ID=MS.gene060083.t1.exon3;Parent=MS.gene060083.t1 |
chr6.2 | CDS | 68384111 | 68384945 | 68384111 | ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1 |
Gene Sequence |
Protein sequence |