AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060083


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060083.t1 MTR_6g059930 95.750 400 17 0 2 401 52 451 0.0 761
MS.gene060083.t1 MTR_6g059930 95.750 400 17 0 2 401 20 419 0.0 761
MS.gene060083.t1 MTR_2g088390 45.676 370 197 3 34 401 80 447 9.61e-118 350
MS.gene060083.t1 MTR_2g067610 47.531 324 167 2 79 401 8 329 1.26e-108 322
MS.gene060083.t1 MTR_5g072520 41.695 295 152 3 126 400 2 296 6.85e-81 255
MS.gene060083.t1 MTR_5g072520 30.159 126 87 1 93 217 161 286 1.84e-13 72.0
MS.gene060083.t1 MTR_2g088750 38.591 298 154 3 90 387 55 323 2.14e-68 220
MS.gene060083.t1 MTR_2g088750 27.500 120 87 0 261 380 54 173 1.81e-12 68.6
MS.gene060083.t1 MTR_1g054885 53.247 77 34 2 321 396 2 77 3.46e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060083.t1 AT1G64810 65.206 388 133 2 16 401 73 460 0.0 557
MS.gene060083.t1 AT1G64810 65.206 388 133 2 16 401 49 436 0.0 557
MS.gene060083.t1 AT5G57930 43.377 385 212 3 17 400 63 442 1.48e-110 332
MS.gene060083.t1 AT5G57930 43.377 385 212 3 17 400 60 439 2.03e-110 331
MS.gene060083.t1 AT5G61930 43.562 365 196 6 40 401 45 402 1.14e-102 310
MS.gene060083.t1 AT5G61930 43.562 365 196 6 40 401 45 402 1.14e-102 310
MS.gene060083.t1 AT3G21740 36.700 297 157 2 90 386 55 320 2.55e-58 194
MS.gene060083.t1 AT3G21740 29.457 129 91 0 252 380 45 173 3.38e-14 73.6

Find 119 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCGGGAAATCGACATTT+TGG 0.188456 6.2:-68383543 None:intergenic
CTAACATGCCACACGTAATT+TGG 0.213116 6.2:-68384751 None:intergenic
AGCCTGTTTGATTTGTTTAA+AGG 0.228852 6.2:-68383602 None:intergenic
GGAACAAGCAATCCATTCTT+TGG 0.306524 6.2:-68383679 None:intergenic
TTGCATGTCATTCCTGCATA+TGG 0.315621 6.2:+68383772 MS.gene060083:CDS
TTGATTTGTTTAAAGGGAAT+AGG 0.347331 6.2:-68383595 None:intergenic
GCTGCGTTGAAGAGATATTA+TGG 0.350367 6.2:+68384799 MS.gene060083:CDS
TGACAGAGGCGGACATTTAG+AGG 0.357152 6.2:+68384414 MS.gene060083:CDS
TATCATCTCTTTGACCCATT+TGG 0.357302 6.2:+68384247 MS.gene060083:CDS
TGATTTGTTTAAAGGGAATA+GGG 0.359796 6.2:-68383594 None:intergenic
GCCTGTTTGATTTGTTTAAA+GGG 0.365584 6.2:-68383601 None:intergenic
ATAGTTCTCATGCTTGGGTC+AGG 0.375929 6.2:+68384188 MS.gene060083:CDS
TGCATAATGCGCTTACCAAA+TGG 0.376615 6.2:-68384262 None:intergenic
TCCCTTTAAACAAATCAAAC+AGG 0.403204 6.2:+68383600 MS.gene060083:CDS
GTGGATCATTTAAGCATCAA+TGG 0.408425 6.2:+68384677 MS.gene060083:CDS
TGGCATGTTAGAGACATTAA+TGG 0.410621 6.2:+68384763 MS.gene060083:CDS
TTCGTACGGGATTTGTCCTT+CGG 0.414111 6.2:-68384372 None:intergenic
CTCATGAAGTATTTGATGCT+TGG 0.427194 6.2:+68383719 MS.gene060083:CDS
CAGGAATGACATGCAAAAGC+TGG 0.432380 6.2:-68383765 None:intergenic
CTTCATGAGCAACGGGAACT+AGG 0.441984 6.2:-68383705 None:intergenic
TGCATATCAAATAGTTAGAA+AGG 0.444834 6.2:+68384561 MS.gene060083:CDS
CCTCTTGAACCTCCAAAGAA+TGG 0.447913 6.2:+68383667 MS.gene060083:CDS
TTCCCGCCAAAGTTGCCAAA+AGG 0.457458 6.2:+68383556 MS.gene060083:CDS
GGAGGTTCATGTTGGACCGT+GGG 0.464550 6.2:+68384636 MS.gene060083:CDS
TGTTTAAAGGGAATAGGGTA+TGG 0.466391 6.2:-68383589 None:intergenic
TCAAGCCGGCGTGGATATCC+CGG 0.472145 6.2:+68384336 MS.gene060083:CDS
GCATAATGCGCTTACCAAAT+GGG 0.472311 6.2:-68384261 None:intergenic
ACGTCATAGTTCTCATGCTT+GGG 0.473814 6.2:+68384183 MS.gene060083:CDS
CGTCTCCACACAAATTCGTC+AGG 0.475595 6.2:-68383508 None:intergenic
TCTCTTCAACGCAGCCGTGA+TGG 0.477116 6.2:-68384791 None:intergenic
TCAAATACTTCATGAGCAAC+GGG 0.479703 6.2:-68383712 None:intergenic
CTCTTCAACGCAGCCGTGAT+GGG 0.482385 6.2:-68384790 None:intergenic
CACGTCATAGTTCTCATGCT+TGG 0.482980 6.2:+68384182 MS.gene060083:CDS
ATTCCCGCCTCATCTGTGTC+TGG 0.482983 6.2:-68384913 None:intergenic
GCTCAACAACAGCTGGAATC+CGG 0.485227 6.2:-68384306 None:intergenic
TAGTTCTCATGCTTGGGTCA+GGG 0.486077 6.2:+68384189 MS.gene060083:CDS
GGTCACAATGCAAAGCTTTG+TGG 0.487513 6.2:+68384658 MS.gene060083:CDS
AAGTGTAGATCGGCATTACC+TGG 0.487530 6.2:+68383454 MS.gene060083:CDS
GGATTTGTCCTTCGGCGGGA+TGG 0.487968 6.2:-68384364 None:intergenic
TACGGGATTTGTCCTTCGGC+GGG 0.489443 6.2:-68384368 None:intergenic
TCCCGCCAAAGTTGCCAAAA+GGG 0.490337 6.2:+68383557 MS.gene060083:CDS
GACTTTGATACTTACCGAGC+TGG 0.500611 6.2:+68384478 MS.gene060083:CDS
CGATTTCTGCAGTGAATGCT+CGG 0.504459 6.2:+68384099 MS.gene060083:intron
GCAAGCTGGTGCACGTATAC+CGG 0.508230 6.2:+68384852 MS.gene060083:CDS
CCATTCTTTGGAGGTTCAAG+AGG 0.510935 6.2:-68383667 None:intergenic
AGATGGAAAACATGGTTGGC+AGG 0.511785 6.2:+68384702 MS.gene060083:CDS
ATGCAGAGCTCAACAACAGC+TGG 0.512811 6.2:-68384313 None:intergenic
AAGAGATGATATGACTCAAT+CGG 0.515946 6.2:-68384235 None:intergenic
ATCAAATACTTCATGAGCAA+CGG 0.518555 6.2:-68383713 None:intergenic
GAGTAATACTTTGTGCCAAT+CGG 0.519093 6.2:+68383476 MS.gene060083:CDS
TCTCCTCCCTACCATTCGTA+CGG 0.519425 6.2:-68384386 None:intergenic
TGAGCAACGGGAACTAGGTC+AGG 0.519988 6.2:-68383700 None:intergenic
AGAACTATGACGTGTTGAAC+TGG 0.520026 6.2:-68384173 None:intergenic
AGTTCTCATGCTTGGGTCAG+GGG 0.522088 6.2:+68384190 MS.gene060083:CDS
TTGCACACAAACTTCTACTA+CGG 0.527595 6.2:-68384833 None:intergenic
GGAAAGAAAACTTGCTAGCA+AGG 0.530795 6.2:+68383633 MS.gene060083:CDS
ACAAGCAATCCATTCTTTGG+AGG 0.530814 6.2:-68383676 None:intergenic
CTTCGGCGGGATGGATACTC+CGG 0.532934 6.2:-68384355 None:intergenic
ACGTCTGACAACGGTGGAGG+GGG 0.534026 6.2:-68384511 None:intergenic
GGTACGTCTGACAACGGTGG+AGG 0.534438 6.2:-68384514 None:intergenic
GAAGTACATGTGGCTCAGAC+TGG 0.537083 6.2:+68384121 MS.gene060083:CDS
ACGGCCTTCACAATCTAGAA+TGG 0.542451 6.2:-68384149 None:intergenic
CTCCTCCCTACCATTCGTAC+GGG 0.543645 6.2:-68384385 None:intergenic
ACAAATCCCGTACGAATGGT+AGG 0.543894 6.2:+68384379 MS.gene060083:CDS
CGGAGGTTCATGTTGGACCG+TGG 0.546022 6.2:+68384635 MS.gene060083:CDS
ATCAACGGCTTGTACTCGTC+CGG 0.547415 6.2:-68384871 None:intergenic
AATCAAACAGGCTGCAAAGA+CGG 0.548813 6.2:+68383612 MS.gene060083:CDS
GTTGAGCTCTGCATTCAAGC+CGG 0.549404 6.2:+68384322 MS.gene060083:CDS
TATTGCTCGGAGGTTCATGT+TGG 0.552092 6.2:+68384628 MS.gene060083:CDS
CAATGGAGAGATGGAAAACA+TGG 0.554191 6.2:+68384694 MS.gene060083:CDS
GTGTACCTACAGCCATATGC+AGG 0.556756 6.2:-68383784 None:intergenic
GAAAGCATGCGGTTATTGCT+CGG 0.560639 6.2:+68384615 MS.gene060083:CDS
GCATATCAAATAGTTAGAAA+GGG 0.563121 6.2:+68384562 MS.gene060083:CDS
ACACAAACTTCTACTACGGC+AGG 0.565853 6.2:-68384829 None:intergenic
TTTAAGCATCAATGGAGAGA+TGG 0.566672 6.2:+68384685 MS.gene060083:CDS
TACGTCTGACAACGGTGGAG+GGG 0.567599 6.2:-68384512 None:intergenic
GTCAGGTCTAAGCTTCCGAT+TGG 0.569871 6.2:-68383491 None:intergenic
ACATGCCACACGTAATTTGG+AGG 0.570824 6.2:-68384748 None:intergenic
TGCAGAATTCTCTTCTGTCA+TGG 0.573385 6.2:+68384456 MS.gene060083:CDS
CGGAGTATCCATCCCGCCGA+AGG 0.584679 6.2:+68384356 MS.gene060083:CDS
ACAATTCAACAAGTGTAGAT+CGG 0.588302 6.2:+68383444 MS.gene060083:CDS
TCATTCCTGCATATGGCTGT+AGG 0.588472 6.2:+68383779 MS.gene060083:CDS
AGGAATGACATGCAAAAGCT+GGG 0.589239 6.2:-68383764 None:intergenic
TCTGCAGCGTGCAACGACTT+AGG 0.591342 6.2:-68384439 None:intergenic
AAGGACAAATCCCGTACGAA+TGG 0.592295 6.2:+68384375 MS.gene060083:CDS
GGAGAGATGGAAAACATGGT+TGG 0.592522 6.2:+68384698 MS.gene060083:CDS
ATACGCGGTTTGAATATGAC+CGG 0.594381 6.2:+68384287 MS.gene060083:CDS
TTCAACGCAGCCGTGATGGG+AGG 0.603188 6.2:-68384787 None:intergenic
AGCTTTGCATTGTGACCCCA+CGG 0.605815 6.2:-68384652 None:intergenic
TATGACGTGTTGAACTGGTA+CGG 0.605983 6.2:-68384168 None:intergenic
CAAATCCCGTACGAATGGTA+GGG 0.608289 6.2:+68384380 MS.gene060083:CDS
ATTCCAGACACAGATGAGGC+GGG 0.610636 6.2:+68384910 MS.gene060083:CDS
GTACGGGATTTGTCCTTCGG+CGG 0.615282 6.2:-68384369 None:intergenic
GTACGTCTGACAACGGTGGA+GGG 0.615937 6.2:-68384513 None:intergenic
TTCGGCGGGATGGATACTCC+GGG 0.618728 6.2:-68384354 None:intergenic
TTGGCACAAAGTATTACTCC+AGG 0.619449 6.2:-68383472 None:intergenic
CACTCCATTCTAGATTGTGA+AGG 0.624567 6.2:+68384145 MS.gene060083:CDS
ACGAGTACAAGCCGTTGATG+AGG 0.627677 6.2:+68384875 MS.gene060083:CDS
ACAATATCAAGCCTCATCAA+CGG 0.629198 6.2:-68384886 None:intergenic
GGGGAAATCGATCACCAGCT+CGG 0.633708 6.2:-68384492 None:intergenic
AATTCCAGACACAGATGAGG+CGG 0.641140 6.2:+68384909 MS.gene060083:CDS
CATTAATGGACCTCCCATCA+CGG 0.643796 6.2:+68384777 MS.gene060083:CDS
ATCCCGTACGAATGGTAGGG+AGG 0.647760 6.2:+68384383 MS.gene060083:CDS
GTAGAAGTTTGTGTGCAAGC+TGG 0.651785 6.2:+68384838 MS.gene060083:CDS
TGAATGCTCGGAAGTACATG+TGG 0.653362 6.2:+68384111 MS.gene060083:CDS
GTTGAAGAGATATTATGGAA+AGG 0.653812 6.2:+68384804 MS.gene060083:CDS
GAAAGAAAACTTGCTAGCAA+GGG 0.657753 6.2:+68383634 MS.gene060083:CDS
AAATACACGGTGAAAGCATG+CGG 0.672006 6.2:+68384604 MS.gene060083:CDS
TGTAATTCCAGACACAGATG+AGG 0.676525 6.2:+68384906 MS.gene060083:CDS
GGGAGGAGAGTACTTGACAG+AGG 0.676607 6.2:+68384400 MS.gene060083:CDS
GAGGTTCATGTTGGACCGTG+GGG 0.679811 6.2:+68384637 MS.gene060083:CDS
GCTCTGCATTCAAGCCGGCG+TGG 0.681643 6.2:+68384327 MS.gene060083:CDS
AGGAGAGTACTTGACAGAGG+CGG 0.682036 6.2:+68384403 MS.gene060083:CDS
TTAGACCTGACGAATTTGTG+TGG 0.683473 6.2:+68383503 MS.gene060083:CDS
AGCATGCGGTTATTGCTCGG+AGG 0.699987 6.2:+68384618 MS.gene060083:CDS
TTAGGTACGTCTGACAACGG+TGG 0.710969 6.2:-68384517 None:intergenic
AGCGCATTATGCATGATACG+CGG 0.717266 6.2:+68384272 MS.gene060083:CDS
GAAGTTGATGAAGAAATACA+CGG 0.719815 6.2:+68384591 MS.gene060083:CDS
ATACTCCGGGATATCCACGC+CGG 0.731710 6.2:-68384341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTAATACTGATGC+AGG + chr6.2:68384057-68384076 MS.gene060083:intron 20.0%
! AAAGATAAACTATTGAGAAG+GGG - chr6.2:68383400-68383419 None:intergenic 25.0%
! AATCATCGAGAAAAATAAAC+CGG + chr6.2:68383886-68383905 MS.gene060083:intron 25.0%
! ACAAAGATAAACTATTGAGA+AGG - chr6.2:68383402-68383421 None:intergenic 25.0%
! CAAAGATAAACTATTGAGAA+GGG - chr6.2:68383401-68383420 None:intergenic 25.0%
! CATAATATTCGAGAATTGTT+TGG - chr6.2:68383349-68383368 None:intergenic 25.0%
! GCATATCAAATAGTTAGAAA+GGG + chr6.2:68384562-68384581 MS.gene060083:CDS 25.0%
! TGCATATCAAATAGTTAGAA+AGG + chr6.2:68384561-68384580 MS.gene060083:CDS 25.0%
!! ATAGTTTCTTGAGCAATTTT+AGG - chr6.2:68384538-68384557 None:intergenic 25.0%
!! ATTTTTCTCACAAACCATAA+TGG - chr6.2:68383853-68383872 None:intergenic 25.0%
!!! TGAGTCTTTACTCTTTTTTT+TGG + chr6.2:68384002-68384021 MS.gene060083:intron 25.0%
!!! TGATTTGTTTAAAGGGAATA+GGG - chr6.2:68383597-68383616 None:intergenic 25.0%
!!! TTGATTTGTTTAAAGGGAAT+AGG - chr6.2:68383598-68383617 None:intergenic 25.0%
!!! TTTTTTAGTGAAGACCATTA+TGG + chr6.2:68383836-68383855 MS.gene060083:intron 25.0%
AAAACAAATGCAACGAAACT+TGG - chr6.2:68384035-68384054 None:intergenic 30.0%
AAAAGAGTAAAGACTCATTG+TGG - chr6.2:68383999-68384018 None:intergenic 30.0%
AAGAGATGATATGACTCAAT+CGG - chr6.2:68384238-68384257 None:intergenic 30.0%
ACAATTCAACAAGTGTAGAT+CGG + chr6.2:68383444-68383463 MS.gene060083:CDS 30.0%
ATCAAATACTTCATGAGCAA+CGG - chr6.2:68383716-68383735 None:intergenic 30.0%
ATCATCGAGAAAAATAAACC+GGG + chr6.2:68383887-68383906 MS.gene060083:intron 30.0%
ATCTCAATTTAACCAGGTTT+CGG - chr6.2:68383273-68383292 None:intergenic 30.0%
GCAAAAAGGAATCAAAAGTA+GGG + chr6.2:68383323-68383342 MS.gene060083:intron 30.0%
GTTGAAGAGATATTATGGAA+AGG + chr6.2:68384804-68384823 MS.gene060083:CDS 30.0%
TATGCTCAAGGATTTGAATT+GGG - chr6.2:68383239-68383258 None:intergenic 30.0%
TCCCTTTAAACAAATCAAAC+AGG + chr6.2:68383600-68383619 MS.gene060083:CDS 30.0%
TTATGCTCAAGGATTTGAAT+TGG - chr6.2:68383240-68383259 None:intergenic 30.0%
TTGAACATCTCAATTTAACC+AGG - chr6.2:68383279-68383298 None:intergenic 30.0%
!! AGCCTGTTTGATTTGTTTAA+AGG - chr6.2:68383605-68383624 None:intergenic 30.0%
!! ATTTCGAGTTTAGTTCAAGT+AGG - chr6.2:68383924-68383943 None:intergenic 30.0%
!! GAAGTTGATGAAGAAATACA+CGG + chr6.2:68384591-68384610 MS.gene060083:CDS 30.0%
!! GCCTGTTTGATTTGTTTAAA+GGG - chr6.2:68383604-68383623 None:intergenic 30.0%
!! TTTCGAGTTTAGTTCAAGTA+GGG - chr6.2:68383923-68383942 None:intergenic 30.0%
AAACATGTCACATTAGAAGG+TGG + chr6.2:68383301-68383320 MS.gene060083:intron 35.0%
AAATCCTTGAGCATAAACGT+TGG + chr6.2:68383244-68383263 MS.gene060083:intron 35.0%
AAGTAGGGATTAAATTGTCC+CGG - chr6.2:68383908-68383927 None:intergenic 35.0%
ACAATATCAAGCCTCATCAA+CGG - chr6.2:68384889-68384908 None:intergenic 35.0%
ACGAAACATGTCACATTAGA+AGG + chr6.2:68383298-68383317 MS.gene060083:intron 35.0%
ACTAGAAGATAAGCACAGTA+TGG - chr6.2:68383809-68383828 None:intergenic 35.0%
ATAATGTTCTGCTACTGCTA+GGG + chr6.2:68383947-68383966 MS.gene060083:intron 35.0%
GAGTAATACTTTGTGCCAAT+CGG + chr6.2:68383476-68383495 MS.gene060083:CDS 35.0%
GGCAAAAAGGAATCAAAAGT+AGG + chr6.2:68383322-68383341 MS.gene060083:intron 35.0%
GTGGATCATTTAAGCATCAA+TGG + chr6.2:68384677-68384696 MS.gene060083:CDS 35.0%
TATCATCTCTTTGACCCATT+TGG + chr6.2:68384247-68384266 MS.gene060083:CDS 35.0%
TCAAATACTTCATGAGCAAC+GGG - chr6.2:68383715-68383734 None:intergenic 35.0%
TGGCATGTTAGAGACATTAA+TGG + chr6.2:68384763-68384782 MS.gene060083:CDS 35.0%
TGTTTAAAGGGAATAGGGTA+TGG - chr6.2:68383592-68383611 None:intergenic 35.0%
TTGCACACAAACTTCTACTA+CGG - chr6.2:68384836-68384855 None:intergenic 35.0%
TTTAAGCATCAATGGAGAGA+TGG + chr6.2:68384685-68384704 MS.gene060083:CDS 35.0%
! CTCATGAAGTATTTGATGCT+TGG + chr6.2:68383719-68383738 MS.gene060083:CDS 35.0%
! TTTTACCTCCAAATTACGTG+TGG + chr6.2:68384743-68384762 MS.gene060083:CDS 35.0%
!! ATTTTAGGTACGTCTGACAA+CGG - chr6.2:68384523-68384542 None:intergenic 35.0%
!! GAAAGAAAACTTGCTAGCAA+GGG + chr6.2:68383634-68383653 MS.gene060083:CDS 35.0%
!! GCTTGGAAGCTTTTGATTAA+AGG + chr6.2:68383736-68383755 MS.gene060083:CDS 35.0%
!! TATGGCTTTTTCTTCCCTTT+TGG - chr6.2:68383574-68383593 None:intergenic 35.0%
AATCAAACAGGCTGCAAAGA+CGG + chr6.2:68383612-68383631 MS.gene060083:CDS 40.0%
ACAAGCAATCCATTCTTTGG+AGG - chr6.2:68383679-68383698 None:intergenic 40.0%
ACGTCATAGTTCTCATGCTT+GGG + chr6.2:68384183-68384202 MS.gene060083:CDS 40.0%
AGAACTATGACGTGTTGAAC+TGG - chr6.2:68384176-68384195 None:intergenic 40.0%
AGGAATGACATGCAAAAGCT+GGG - chr6.2:68383767-68383786 None:intergenic 40.0%
ATACGCGGTTTGAATATGAC+CGG + chr6.2:68384287-68384306 MS.gene060083:CDS 40.0%
ATTGTGGTCCTGGAGAAAAT+GGG - chr6.2:68383983-68384002 None:intergenic 40.0%
CAATGGAGAGATGGAAAACA+TGG + chr6.2:68384694-68384713 MS.gene060083:CDS 40.0%
CACATTAGAAGGTGGCAAAA+AGG + chr6.2:68383309-68383328 MS.gene060083:intron 40.0%
CACTCCATTCTAGATTGTGA+AGG + chr6.2:68384145-68384164 MS.gene060083:CDS 40.0%
CATAATGTTCTGCTACTGCT+AGG + chr6.2:68383946-68383965 MS.gene060083:intron 40.0%
CTAACATGCCACACGTAATT+TGG - chr6.2:68384754-68384773 None:intergenic 40.0%
CTGGAGAAAATGGGATAACT+TGG - chr6.2:68383974-68383993 None:intergenic 40.0%
GAAACCAACGTTTATGCTCA+AGG - chr6.2:68383251-68383270 None:intergenic 40.0%
GCATAATGCGCTTACCAAAT+GGG - chr6.2:68384264-68384283 None:intergenic 40.0%
GCTGCGTTGAAGAGATATTA+TGG + chr6.2:68384799-68384818 MS.gene060083:CDS 40.0%
GGAACAAGCAATCCATTCTT+TGG - chr6.2:68383682-68383701 None:intergenic 40.0%
TATGACGTGTTGAACTGGTA+CGG - chr6.2:68384171-68384190 None:intergenic 40.0%
TGCAGAATTCTCTTCTGTCA+TGG + chr6.2:68384456-68384475 MS.gene060083:CDS 40.0%
TGCATAATGCGCTTACCAAA+TGG - chr6.2:68384265-68384284 None:intergenic 40.0%
TGTAATTCCAGACACAGATG+AGG + chr6.2:68384906-68384925 MS.gene060083:CDS 40.0%
TTAGACCTGACGAATTTGTG+TGG + chr6.2:68383503-68383522 MS.gene060083:CDS 40.0%
TTGCATGTCATTCCTGCATA+TGG + chr6.2:68383772-68383791 MS.gene060083:CDS 40.0%
! AAATACACGGTGAAAGCATG+CGG + chr6.2:68384604-68384623 MS.gene060083:CDS 40.0%
! CAAGTTATCCCATTTTCTCC+AGG + chr6.2:68383972-68383991 MS.gene060083:intron 40.0%
! TTCTTCCCTTTTGGCAACTT+TGG - chr6.2:68383565-68383584 None:intergenic 40.0%
! TTGGCACAAAGTATTACTCC+AGG - chr6.2:68383475-68383494 None:intergenic 40.0%
!! GGAAAGAAAACTTGCTAGCA+AGG + chr6.2:68383633-68383652 MS.gene060083:CDS 40.0%
AAGGACAAATCCCGTACGAA+TGG + chr6.2:68384375-68384394 MS.gene060083:CDS 45.0%
AAGTGTAGATCGGCATTACC+TGG + chr6.2:68383454-68383473 MS.gene060083:CDS 45.0%
AATTCCAGACACAGATGAGG+CGG + chr6.2:68384909-68384928 MS.gene060083:CDS 45.0%
ACAAATCCCGTACGAATGGT+AGG + chr6.2:68384379-68384398 MS.gene060083:CDS 45.0%
ACACAAACTTCTACTACGGC+AGG - chr6.2:68384832-68384851 None:intergenic 45.0%
ACATGCCACACGTAATTTGG+AGG - chr6.2:68384751-68384770 None:intergenic 45.0%
ACGGCCTTCACAATCTAGAA+TGG - chr6.2:68384152-68384171 None:intergenic 45.0%
AGATGGAAAACATGGTTGGC+AGG + chr6.2:68384702-68384721 MS.gene060083:CDS 45.0%
AGCGCATTATGCATGATACG+CGG + chr6.2:68384272-68384291 MS.gene060083:CDS 45.0%
ATAGTTCTCATGCTTGGGTC+AGG + chr6.2:68384188-68384207 MS.gene060083:CDS 45.0%
CAAATCCCGTACGAATGGTA+GGG + chr6.2:68384380-68384399 MS.gene060083:CDS 45.0%
CACGTCATAGTTCTCATGCT+TGG + chr6.2:68384182-68384201 MS.gene060083:CDS 45.0%
CAGGAATGACATGCAAAAGC+TGG - chr6.2:68383768-68383787 None:intergenic 45.0%
CATTGTGGTCCTGGAGAAAA+TGG - chr6.2:68383984-68384003 None:intergenic 45.0%
CCTCTTGAACCTCCAAAGAA+TGG + chr6.2:68383667-68383686 MS.gene060083:CDS 45.0%
CGATTTCTGCAGTGAATGCT+CGG + chr6.2:68384099-68384118 MS.gene060083:intron 45.0%
GACTTTGATACTTACCGAGC+TGG + chr6.2:68384478-68384497 MS.gene060083:CDS 45.0%
GGAGAGATGGAAAACATGGT+TGG + chr6.2:68384698-68384717 MS.gene060083:CDS 45.0%
GGTCACAATGCAAAGCTTTG+TGG + chr6.2:68384658-68384677 MS.gene060083:CDS 45.0%
GTAAAGACTCATTGTGGTCC+TGG - chr6.2:68383993-68384012 None:intergenic 45.0%
GTAGAAGTTTGTGTGCAAGC+TGG + chr6.2:68384838-68384857 MS.gene060083:CDS 45.0%
TAGTTCTCATGCTTGGGTCA+GGG + chr6.2:68384189-68384208 MS.gene060083:CDS 45.0%
TATTGCTCGGAGGTTCATGT+TGG + chr6.2:68384628-68384647 MS.gene060083:CDS 45.0%
TCATTCCTGCATATGGCTGT+AGG + chr6.2:68383779-68383798 MS.gene060083:CDS 45.0%
TTCGTACGGGATTTGTCCTT+CGG - chr6.2:68384375-68384394 None:intergenic 45.0%
! CATTAATGGACCTCCCATCA+CGG + chr6.2:68384777-68384796 MS.gene060083:CDS 45.0%
! CCATTCTTTGGAGGTTCAAG+AGG - chr6.2:68383670-68383689 None:intergenic 45.0%
! GAAAGCATGCGGTTATTGCT+CGG + chr6.2:68384615-68384634 MS.gene060083:CDS 45.0%
! TGAATGCTCGGAAGTACATG+TGG + chr6.2:68384111-68384130 MS.gene060083:CDS 45.0%
! TGGCGGGAAATCGACATTTT+GGG - chr6.2:68383545-68383564 None:intergenic 45.0%
! TTCCCTTTTGGCAACTTTGG+CGG - chr6.2:68383562-68383581 None:intergenic 45.0%
! TTGGCGGGAAATCGACATTT+TGG - chr6.2:68383546-68383565 None:intergenic 45.0%
!! AAACGTTGGTTTCCGAAACC+TGG + chr6.2:68383258-68383277 MS.gene060083:intron 45.0%
ACGAGTACAAGCCGTTGATG+AGG + chr6.2:68384875-68384894 MS.gene060083:CDS 50.0%
AGCTTTGCATTGTGACCCCA+CGG - chr6.2:68384655-68384674 None:intergenic 50.0%
AGTTCTCATGCTTGGGTCAG+GGG + chr6.2:68384190-68384209 MS.gene060083:CDS 50.0%
ATCAACGGCTTGTACTCGTC+CGG - chr6.2:68384874-68384893 None:intergenic 50.0%
ATGCAGAGCTCAACAACAGC+TGG - chr6.2:68384316-68384335 None:intergenic 50.0%
ATTCCAGACACAGATGAGGC+GGG + chr6.2:68384910-68384929 MS.gene060083:CDS 50.0%
CGTCTCCACACAAATTCGTC+AGG - chr6.2:68383511-68383530 None:intergenic 50.0%
CTTCATGAGCAACGGGAACT+AGG - chr6.2:68383708-68383727 None:intergenic 50.0%
GAAGTACATGTGGCTCAGAC+TGG + chr6.2:68384121-68384140 MS.gene060083:CDS 50.0%
GCTCAACAACAGCTGGAATC+CGG - chr6.2:68384309-68384328 None:intergenic 50.0%
GTCAGGTCTAAGCTTCCGAT+TGG - chr6.2:68383494-68383513 None:intergenic 50.0%
GTGTACCTACAGCCATATGC+AGG - chr6.2:68383787-68383806 None:intergenic 50.0%
GTTGAGCTCTGCATTCAAGC+CGG + chr6.2:68384322-68384341 MS.gene060083:CDS 50.0%
TCCCGCCAAAGTTGCCAAAA+GGG + chr6.2:68383557-68383576 MS.gene060083:CDS 50.0%
TCTCCTCCCTACCATTCGTA+CGG - chr6.2:68384389-68384408 None:intergenic 50.0%
TGACAGAGGCGGACATTTAG+AGG + chr6.2:68384414-68384433 MS.gene060083:CDS 50.0%
TTAGGTACGTCTGACAACGG+TGG - chr6.2:68384520-68384539 None:intergenic 50.0%
TTCCCGCCAAAGTTGCCAAA+AGG + chr6.2:68383556-68383575 MS.gene060083:CDS 50.0%
! TCCCTTTTGGCAACTTTGGC+GGG - chr6.2:68383561-68383580 None:intergenic 50.0%
!! AGGAGAGTACTTGACAGAGG+CGG + chr6.2:68384403-68384422 MS.gene060083:CDS 50.0%
AGCATGCGGTTATTGCTCGG+AGG + chr6.2:68384618-68384637 MS.gene060083:CDS 55.0%
ATACTCCGGGATATCCACGC+CGG - chr6.2:68384344-68384363 None:intergenic 55.0%
ATCCCGTACGAATGGTAGGG+AGG + chr6.2:68384383-68384402 MS.gene060083:CDS 55.0%
ATTCCCGCCTCATCTGTGTC+TGG - chr6.2:68384916-68384935 None:intergenic 55.0%
CTCCTCCCTACCATTCGTAC+GGG - chr6.2:68384388-68384407 None:intergenic 55.0%
CTCTTCAACGCAGCCGTGAT+GGG - chr6.2:68384793-68384812 None:intergenic 55.0%
GAGGTTCATGTTGGACCGTG+GGG + chr6.2:68384637-68384656 MS.gene060083:CDS 55.0%
GCAAGCTGGTGCACGTATAC+CGG + chr6.2:68384852-68384871 MS.gene060083:CDS 55.0%
GGAGGTTCATGTTGGACCGT+GGG + chr6.2:68384636-68384655 MS.gene060083:CDS 55.0%
GGGGAAATCGATCACCAGCT+CGG - chr6.2:68384495-68384514 None:intergenic 55.0%
GTACGGGATTTGTCCTTCGG+CGG - chr6.2:68384372-68384391 None:intergenic 55.0%
GTACGTCTGACAACGGTGGA+GGG - chr6.2:68384516-68384535 None:intergenic 55.0%
TACGGGATTTGTCCTTCGGC+GGG - chr6.2:68384371-68384390 None:intergenic 55.0%
TACGTCTGACAACGGTGGAG+GGG - chr6.2:68384515-68384534 None:intergenic 55.0%
TCTCTTCAACGCAGCCGTGA+TGG - chr6.2:68384794-68384813 None:intergenic 55.0%
TCTGCAGCGTGCAACGACTT+AGG - chr6.2:68384442-68384461 None:intergenic 55.0%
TGAGCAACGGGAACTAGGTC+AGG - chr6.2:68383703-68383722 None:intergenic 55.0%
!! GGGAGGAGAGTACTTGACAG+AGG + chr6.2:68384400-68384419 MS.gene060083:CDS 55.0%
ACGTCTGACAACGGTGGAGG+GGG - chr6.2:68384514-68384533 None:intergenic 60.0%
CGGAGGTTCATGTTGGACCG+TGG + chr6.2:68384635-68384654 MS.gene060083:CDS 60.0%
CTTCGGCGGGATGGATACTC+CGG - chr6.2:68384358-68384377 None:intergenic 60.0%
GGATTTGTCCTTCGGCGGGA+TGG - chr6.2:68384367-68384386 None:intergenic 60.0%
GGTACGTCTGACAACGGTGG+AGG - chr6.2:68384517-68384536 None:intergenic 60.0%
TCAAGCCGGCGTGGATATCC+CGG + chr6.2:68384336-68384355 MS.gene060083:CDS 60.0%
TTCGGCGGGATGGATACTCC+GGG - chr6.2:68384357-68384376 None:intergenic 60.0%
! TTCAACGCAGCCGTGATGGG+AGG - chr6.2:68384790-68384809 None:intergenic 60.0%
GCTCTGCATTCAAGCCGGCG+TGG + chr6.2:68384327-68384346 MS.gene060083:CDS 65.0%
! CGGAGTATCCATCCCGCCGA+AGG + chr6.2:68384356-68384375 MS.gene060083:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 68383219 68384945 68383219 ID=MS.gene060083
chr6.2 mRNA 68383219 68384945 68383219 ID=MS.gene060083.t1;Parent=MS.gene060083
chr6.2 exon 68383219 68383221 68383219 ID=MS.gene060083.t1.exon1;Parent=MS.gene060083.t1
chr6.2 CDS 68383219 68383221 68383219 ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1
chr6.2 exon 68383433 68383800 68383433 ID=MS.gene060083.t1.exon2;Parent=MS.gene060083.t1
chr6.2 CDS 68383433 68383800 68383433 ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1
chr6.2 exon 68384111 68384945 68384111 ID=MS.gene060083.t1.exon3;Parent=MS.gene060083.t1
chr6.2 CDS 68384111 68384945 68384111 ID=cds.MS.gene060083.t1;Parent=MS.gene060083.t1
Gene Sequence

>MS.gene060083

ATGGTACTTTGACTACACCCAATTCAAATCCTTGAGCATAAACGTTGGTTTCCGAAACCTGGTTAAATTGAGATGTTCAACGAAACATGTCACATTAGAAGGTGGCAAAAAGGAATCAAAAGTAGGGCCAAACAATTCTCGAATATTATGTAATGTTATTTTCTTGAAAAATTTATTTCCCCTTCTCAATAGTTTATCTTTGTCTTCGTTGCAGTTTAAGTGTCAACAATTCAACAAGTGTAGATCGGCATTACCTGGAGTAATACTTTGTGCCAATCGGAAGCTTAGACCTGACGAATTTGTGTGGAGACGAAATGAGTCAACCCAAAATGTCGATTTCCCGCCAAAGTTGCCAAAAGGGAAGAAAAAGCCATACCCTATTCCCTTTAAACAAATCAAACAGGCTGCAAAGACGGAAAGAAAACTTGCTAGCAAGGGAATAGAGAAACCTCTTGAACCTCCAAAGAATGGATTGCTTGTTCCTGACCTAGTTCCCGTTGCTCATGAAGTATTTGATGCTTGGAAGCTTTTGATTAAAGGTCTTTCCCAGCTTTTGCATGTCATTCCTGCATATGGCTGTAGGTACACCATACTGTGCTTATCTTCTAGTTTTTTATTTTTTTAGTGAAGACCATTATGGTTTGTGAGAAAAATAAAAGCAACTTTTAATCATCGAGAAAAATAAACCGGGACAATTTAATCCCTACTTGAACTAAACTCGAAATGTCATAATGTTCTGCTACTGCTAGGGACCAAGTTATCCCATTTTCTCCAGGACCACAATGAGTCTTTACTCTTTTTTTTGGTCAATGTCCAAGTTTCGTTGCATTTGTTTTCTTTTTATTTTAATACTGATGCAGGAGTTAAGATCTTGTCAACTCGATTTCTGCAGTGAATGCTCGGAAGTACATGTGGCTCAGACTGGTCACTCCATTCTAGATTGTGAAGGCCGTACCAGTTCAACACGTCATAGTTCTCATGCTTGGGTCAGGGGCAACGTCAATGATATACTTGTTCCGATTGAGTCATATCATCTCTTTGACCCATTTGGTAAGCGCATTATGCATGATACGCGGTTTGAATATGACCGGATTCCAGCTGTTGTTGAGCTCTGCATTCAAGCCGGCGTGGATATCCCGGAGTATCCATCCCGCCGAAGGACAAATCCCGTACGAATGGTAGGGAGGAGAGTACTTGACAGAGGCGGACATTTAGAGGAGCCTAAGTCGTTGCACGCTGCAGAATTCTCTTCTGTCATGGACTTTGATACTTACCGAGCTGGTGATCGATTTCCCCCTCCACCGTTGTCAGACGTACCTAAAATTGCTCAAGAAACTATCGATGCATATCAAATAGTTAGAAAGGGTGTCAAGAAGTTGATGAAGAAATACACGGTGAAAGCATGCGGTTATTGCTCGGAGGTTCATGTTGGACCGTGGGGTCACAATGCAAAGCTTTGTGGATCATTTAAGCATCAATGGAGAGATGGAAAACATGGTTGGCAGGATGCTACTCTAGATGAAGTTTTACCTCCAAATTACGTGTGGCATGTTAGAGACATTAATGGACCTCCCATCACGGCTGCGTTGAAGAGATATTATGGAAAGGCTCCTGCCGTAGTAGAAGTTTGTGTGCAAGCTGGTGCACGTATACCGGACGAGTACAAGCCGTTGATGAGGCTTGATATTGTAATTCCAGACACAGATGAGGCGGGAATGATTGCTTGA

Protein sequence

>MS.gene060083.t1

MFKCQQFNKCRSALPGVILCANRKLRPDEFVWRRNESTQNVDFPPKLPKGKKKPYPIPFKQIKQAAKTERKLASKGIEKPLEPPKNGLLVPDLVPVAHEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPVRMVGRRVLDRGGHLEEPKSLHAAEFSSVMDFDTYRAGDRFPPPPLSDVPKIAQETIDAYQIVRKGVKKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVWHVRDINGPPITAALKRYYGKAPAVVEVCVQAGARIPDEYKPLMRLDIVIPDTDEAGMIA