Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009896.t1 | XP_003615608.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009896.t1 | Q9LUX9 | 70.8 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 6.0e-82 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009896.t1 | G7K6C8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 3.0e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009896 | MS.gene028582 | PPI |
| MS.gene009896 | MS.gene40165 | PPI |
| MS.gene009896 | MS.gene28697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009896.t1 | MTR_5g070030 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 9.76e-151 | 416 |
| MS.gene009896.t1 | MTR_2g081810 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 2.71e-102 | 294 |
| MS.gene009896.t1 | MTR_4g091900 | 69.802 | 202 | 60 | 1 | 1 | 202 | 1 | 201 | 3.12e-101 | 291 |
| MS.gene009896.t1 | MTR_8g466030 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 8.92e-101 | 290 |
| MS.gene009896.t1 | MTR_2g011080 | 65.829 | 199 | 67 | 1 | 4 | 202 | 3 | 200 | 3.94e-95 | 276 |
| MS.gene009896.t1 | MTR_4g091900 | 68.947 | 190 | 58 | 1 | 13 | 202 | 1 | 189 | 2.73e-93 | 270 |
| MS.gene009896.t1 | MTR_4g069250 | 63.959 | 197 | 71 | 0 | 5 | 201 | 52 | 248 | 1.42e-91 | 268 |
| MS.gene009896.t1 | MTR_2g011080 | 64.767 | 193 | 67 | 1 | 10 | 202 | 4 | 195 | 1.91e-90 | 263 |
| MS.gene009896.t1 | MTR_5g019620 | 60.406 | 197 | 78 | 0 | 5 | 201 | 53 | 249 | 1.83e-88 | 260 |
| MS.gene009896.t1 | MTR_2g011080 | 64.667 | 150 | 52 | 1 | 53 | 202 | 1 | 149 | 9.71e-67 | 202 |
| MS.gene009896.t1 | MTR_8g466080 | 68.966 | 116 | 36 | 0 | 87 | 202 | 1 | 116 | 1.98e-53 | 167 |
| MS.gene009896.t1 | MTR_4g091890 | 68.376 | 117 | 33 | 1 | 86 | 202 | 1 | 113 | 2.45e-52 | 164 |
| MS.gene009896.t1 | MTR_8g466110 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| MS.gene009896.t1 | MTR_8g466150 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009896.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene009896.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene009896.t1 | AT5G54500 | 71.859 | 199 | 55 | 1 | 4 | 202 | 3 | 200 | 1.99e-104 | 299 |
| MS.gene009896.t1 | AT4G27270 | 71.357 | 199 | 56 | 1 | 4 | 202 | 3 | 200 | 1.27e-103 | 297 |
| MS.gene009896.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene009896.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene009896.t1 | AT4G36750 | 60.406 | 197 | 78 | 0 | 5 | 201 | 74 | 270 | 1.46e-89 | 264 |
| MS.gene009896.t1 | AT5G54500 | 58.500 | 200 | 74 | 3 | 4 | 203 | 3 | 193 | 1.04e-77 | 233 |
| MS.gene009896.t1 | AT4G27270 | 73.333 | 150 | 39 | 1 | 53 | 202 | 1 | 149 | 3.00e-76 | 226 |
Find 62 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGCTTTGATATT+TGG | 0.205625 | 5.3:+55823853 | MS.gene009896:CDS |
| ATTCGATCCGAAAGAATTTC+AGG | 0.264514 | 5.3:-55823763 | None:intergenic |
| AATTCTTTCGGATCGAATAT+TGG | 0.279333 | 5.3:+55823768 | MS.gene009896:CDS |
| GCAAACCTGCTGGAATCTTC+TGG | 0.309872 | 5.3:+55823965 | MS.gene009896:CDS |
| TTTGAGATGGATGAGGTAAA+AGG | 0.353976 | 5.3:+55824453 | MS.gene009896:CDS |
| GTAAAAGGAGGCTCGGCTTA+TGG | 0.358303 | 5.3:+55824468 | MS.gene009896:CDS |
| AAGGCCTTCTTTGACGCTAC+TGG | 0.365059 | 5.3:+55823913 | MS.gene009896:CDS |
| ATACTCACGCTGAGAGTTCC+TGG | 0.369905 | 5.3:-55824011 | None:intergenic |
| TCAGCTACATCATCTGGTTT+AGG | 0.377031 | 5.3:-55823808 | None:intergenic |
| TTCTGGAGTACTGGATTTAA+CGG | 0.377796 | 5.3:+55823982 | MS.gene009896:CDS |
| TGCAGGTATTACTCATTGTA+TGG | 0.383898 | 5.3:+55823535 | MS.gene009896:intron |
| AATGTATTTACCCTGGTAAA+AGG | 0.394202 | 5.3:-55824550 | None:intergenic |
| ACAGGTACCTGAAATTCTTT+CGG | 0.401906 | 5.3:+55823756 | MS.gene009896:intron |
| GTTCCCCTTGGATACACCTT+TGG | 0.416898 | 5.3:+55824420 | MS.gene009896:CDS |
| TCAGCCTCCACAAGTTGTTC+CGG | 0.417062 | 5.3:-55823838 | None:intergenic |
| TCTGGAGTACTGGATTTAAC+GGG | 0.417125 | 5.3:+55823983 | MS.gene009896:CDS |
| TTAATGTCAGCTACATCATC+TGG | 0.433955 | 5.3:-55823814 | None:intergenic |
| AAGAAGGCCTTGAGCTGGCT+TGG | 0.441508 | 5.3:-55823901 | None:intergenic |
| GGTATGCTTTATGTTCCCCT+TGG | 0.446986 | 5.3:+55824408 | MS.gene009896:CDS |
| GCTGGAATCTTCTGGAGTAC+TGG | 0.455679 | 5.3:+55823973 | MS.gene009896:CDS |
| GGAGGCTCGGCTTATGGCGC+TGG | 0.456356 | 5.3:+55824474 | MS.gene009896:CDS |
| TGACGCTACTGGAGAGTTGT+GGG | 0.458101 | 5.3:+55823924 | MS.gene009896:CDS |
| GCACTCGCAGGCAAACCTGC+TGG | 0.474276 | 5.3:+55823955 | MS.gene009896:CDS |
| TATGGCGCTGGAACTTTCGC+TGG | 0.474798 | 5.3:+55824486 | MS.gene009896:CDS |
| TTGACGCTACTGGAGAGTTG+TGG | 0.476817 | 5.3:+55823923 | MS.gene009896:CDS |
| CTTGGATACACCTTTGGAAG+TGG | 0.482304 | 5.3:+55824426 | MS.gene009896:CDS |
| TCGAATATTGGAAAAGATGA+AGG | 0.496681 | 5.3:+55823780 | MS.gene009896:CDS |
| AAGGTGTTGAAGCAACACTT+TGG | 0.525141 | 5.3:+55823608 | MS.gene009896:CDS |
| TACTGAGCTAGAGCTTCAGC+AGG | 0.532454 | 5.3:+55824527 | MS.gene009896:CDS |
| GCTGGAACTTTCGCTGGAGA+TGG | 0.533057 | 5.3:+55824492 | MS.gene009896:CDS |
| CTCAAACATGCCACTTCCAA+AGG | 0.535164 | 5.3:-55824436 | None:intergenic |
| CGTCAAAGAAGGCCTTGAGC+TGG | 0.538429 | 5.3:-55823906 | None:intergenic |
| CACTTCCAAAGGTGTATCCA+AGG | 0.550034 | 5.3:-55824425 | None:intergenic |
| TGCTGAAGCTCTAGCTCAGT+AGG | 0.555488 | 5.3:-55824525 | None:intergenic |
| GTGTTGAAGCAACACTTTGG+AGG | 0.556934 | 5.3:+55823611 | MS.gene009896:CDS |
| CATTAAGCCGGAACAACTTG+TGG | 0.557154 | 5.3:+55823831 | MS.gene009896:CDS |
| TGGGCGTCTCAAGCACTCGC+AGG | 0.560559 | 5.3:+55823943 | MS.gene009896:CDS |
| GTATGGACATGTGAACACTA+TGG | 0.567651 | 5.3:+55823552 | MS.gene009896:CDS |
| TGGAAGTGGCATGTTTGAGA+TGG | 0.571222 | 5.3:+55824440 | MS.gene009896:CDS |
| CTCTCCAGTAGCGTCAAAGA+AGG | 0.574680 | 5.3:-55823917 | None:intergenic |
| GGATGAGGTAAAAGGAGGCT+CGG | 0.576627 | 5.3:+55824461 | MS.gene009896:CDS |
| CTGGAGTACTGGATTTAACG+GGG | 0.577372 | 5.3:+55823984 | MS.gene009896:CDS |
| ATAACTCAGTTAGCTCATCA+TGG | 0.582402 | 5.3:+55824387 | MS.gene009896:CDS |
| TTTCAGCAATGTATTTACCC+TGG | 0.584614 | 5.3:-55824557 | None:intergenic |
| GCTACATCATCTGGTTTAGG+AGG | 0.591266 | 5.3:-55823805 | None:intergenic |
| TGTTGAAGCAACACTTTGGA+GGG | 0.594022 | 5.3:+55823612 | MS.gene009896:CDS |
| TGATGTAGCTGACATTAAGC+CGG | 0.602082 | 5.3:+55823819 | MS.gene009896:CDS |
| GTACTCCAGAAGATTCCAGC+AGG | 0.603541 | 5.3:-55823970 | None:intergenic |
| TATGATGCCAAGCCAGCTCA+AGG | 0.606898 | 5.3:+55823894 | MS.gene009896:CDS |
| ACTTCCAAAGGTGTATCCAA+GGG | 0.617578 | 5.3:-55824424 | None:intergenic |
| TGGCATGTTTGAGATGGATG+AGG | 0.617807 | 5.3:+55824446 | MS.gene009896:CDS |
| GGCATCATACCAAAACGTGA+AGG | 0.648138 | 5.3:-55823880 | None:intergenic |
| TTAGAAGATGACTATCACCA+AGG | 0.664695 | 5.3:+55823370 | None:intergenic |
| TGGCAAGAGAAGTACACAAG+GGG | 0.666285 | 5.3:+55823572 | MS.gene009896:CDS |
| TGCTTACACAATGTAGACCT+TGG | 0.673794 | 5.3:-55823387 | None:intergenic |
| TAAGCCGGAACAACTTGTGG+AGG | 0.677801 | 5.3:+55823834 | MS.gene009896:CDS |
| GAGATGGATGAGGTAAAAGG+AGG | 0.679998 | 5.3:+55824456 | MS.gene009896:CDS |
| TGGAGTACTGGATTTAACGG+GGG | 0.687704 | 5.3:+55823985 | MS.gene009896:CDS |
| CTTCCAAAGGTGTATCCAAG+GGG | 0.694155 | 5.3:-55824423 | None:intergenic |
| TATGGCAAGAGAAGTACACA+AGG | 0.698554 | 5.3:+55823570 | MS.gene009896:CDS |
| ATGGCAAGAGAAGTACACAA+GGG | 0.726547 | 5.3:+55823571 | MS.gene009896:CDS |
| GGCAAGAGAAGTACACAAGG+GGG | 0.735429 | 5.3:+55823573 | MS.gene009896:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5.3:55823674-55823693 | MS.gene009896:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5.3:55824160-55824179 | MS.gene009896:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5.3:55823456-55823475 | MS.gene009896:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5.3:55824179-55824198 | MS.gene009896:intron | 15.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5.3:55824046-55824065 | None:intergenic | 20.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5.3:55823427-55823446 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5.3:55823436-55823455 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5.3:55823434-55823453 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5.3:55823435-55823454 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5.3:55823691-55823710 | MS.gene009896:intron | 25.0% |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5.3:55824553-55824572 | None:intergenic | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5.3:55823768-55823787 | MS.gene009896:CDS | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5.3:55823426-55823445 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5.3:55824039-55824058 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5.3:55823428-55823447 | None:intergenic | 30.0% | |
| CCAAAAACATAAGACACATA+AGG | - | chr5.3:55824208-55824227 | None:intergenic | 30.0% | |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5.3:55823738-55823757 | MS.gene009896:intron | 30.0% | |
| GGAAAACAGATTGTGAAATT+CGG | - | chr5.3:55824097-55824116 | None:intergenic | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5.3:55824038-55824057 | None:intergenic | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5.3:55823780-55823799 | MS.gene009896:CDS | 30.0% | |
| ! | CCTTATGTGTCTTATGTTTT+TGG | + | chr5.3:55824205-55824224 | MS.gene009896:intron | 30.0% |
| ! | GTTTTCCACTACATTTTTCT+CGG | + | chr5.3:55824110-55824129 | MS.gene009896:intron | 30.0% |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5.3:55823518-55823537 | MS.gene009896:intron | 30.0% |
| ! | TTTTCCACTACATTTTTCTC+GGG | + | chr5.3:55824111-55824130 | MS.gene009896:intron | 30.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5.3:55824037-55824056 | None:intergenic | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5.3:55823756-55823775 | MS.gene009896:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5.3:55824387-55824406 | MS.gene009896:CDS | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5.3:55823766-55823785 | None:intergenic | 35.0% | |
| CCATCAATAACTCTCATAAG+AGG | + | chr5.3:55824304-55824323 | MS.gene009896:intron | 35.0% | |
| CCTCTTATGAGAGTTATTGA+TGG | - | chr5.3:55824307-55824326 | None:intergenic | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5.3:55823705-55823724 | MS.gene009896:intron | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5.3:55824348-55824367 | MS.gene009896:intron | 35.0% | |
| TCCTAATTTCTACTGACATG+TGG | + | chr5.3:55824071-55824090 | MS.gene009896:intron | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5.3:55823535-55823554 | MS.gene009896:intron | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5.3:55823817-55823836 | None:intergenic | 35.0% | |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5.3:55824560-55824579 | None:intergenic | 35.0% | |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5.3:55824453-55824472 | MS.gene009896:CDS | 35.0% |
| !! | TTCTGGAGTACTGGATTTAA+CGG | + | chr5.3:55823982-55824001 | MS.gene009896:CDS | 35.0% |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5.3:55823871-55823890 | MS.gene009896:CDS | 35.0% |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5.3:55824358-55824377 | MS.gene009896:intron | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5.3:55823853-55823872 | MS.gene009896:CDS | 40.0% | |
| GCCACATGTCAGTAGAAATT+AGG | - | chr5.3:55824075-55824094 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5.3:55823552-55823571 | MS.gene009896:CDS | 40.0% | |
| TAGTCCCGAGAAAAATGTAG+TGG | - | chr5.3:55824118-55824137 | None:intergenic | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5.3:55824358-55824377 | None:intergenic | 40.0% | |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5.3:55823819-55823838 | MS.gene009896:CDS | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5.3:55823390-55823409 | None:intergenic | 40.0% | |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5.3:55823612-55823631 | MS.gene009896:CDS | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5.3:55824275-55824294 | MS.gene009896:intron | 40.0% | |
| ! | ACTTCCAAAGGTGTATCCAA+GGG | - | chr5.3:55824427-55824446 | None:intergenic | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5.3:55823571-55823590 | MS.gene009896:CDS | 40.0% |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5.3:55823570-55823589 | MS.gene009896:CDS | 40.0% |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5.3:55823811-55823830 | None:intergenic | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5.3:55823608-55823627 | MS.gene009896:CDS | 40.0% |
| !! | TCTGGAGTACTGGATTTAAC+GGG | + | chr5.3:55823983-55824002 | MS.gene009896:CDS | 40.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5.3:55823831-55823850 | MS.gene009896:CDS | 45.0% | |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5.3:55824456-55824475 | MS.gene009896:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5.3:55823883-55823902 | None:intergenic | 45.0% | |
| GGTATGCTTTATGTTCCCCT+TGG | + | chr5.3:55824408-55824427 | MS.gene009896:CDS | 45.0% | |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5.3:55823611-55823630 | MS.gene009896:CDS | 45.0% | |
| TGGAAGTGGCATGTTTGAGA+TGG | + | chr5.3:55824440-55824459 | MS.gene009896:CDS | 45.0% | |
| ! | CACTTCCAAAGGTGTATCCA+AGG | - | chr5.3:55824428-55824447 | None:intergenic | 45.0% |
| ! | CTCAAACATGCCACTTCCAA+AGG | - | chr5.3:55824439-55824458 | None:intergenic | 45.0% |
| ! | CTTCCAAAGGTGTATCCAAG+GGG | - | chr5.3:55824426-55824445 | None:intergenic | 45.0% |
| ! | CTTGGATACACCTTTGGAAG+TGG | + | chr5.3:55824426-55824445 | MS.gene009896:CDS | 45.0% |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5.3:55823808-55823827 | None:intergenic | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5.3:55823572-55823591 | MS.gene009896:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5.3:55824446-55824465 | MS.gene009896:CDS | 45.0% |
| !! | CTGGAGTACTGGATTTAACG+GGG | + | chr5.3:55823984-55824003 | MS.gene009896:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5.3:55823985-55824004 | MS.gene009896:CDS | 45.0% |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5.3:55823913-55823932 | MS.gene009896:CDS | 50.0% | |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5.3:55823589-55823608 | MS.gene009896:CDS | 50.0% | |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5.3:55824014-55824033 | None:intergenic | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5.3:55823920-55823939 | None:intergenic | 50.0% | |
| GCAAACCTGCTGGAATCTTC+TGG | + | chr5.3:55823965-55823984 | MS.gene009896:CDS | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5.3:55824461-55824480 | MS.gene009896:CDS | 50.0% | |
| GTAAAAGGAGGCTCGGCTTA+TGG | + | chr5.3:55824468-55824487 | MS.gene009896:CDS | 50.0% | |
| GTACTCCAGAAGATTCCAGC+AGG | - | chr5.3:55823973-55823992 | None:intergenic | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5.3:55824420-55824439 | MS.gene009896:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5.3:55823834-55823853 | MS.gene009896:CDS | 50.0% | |
| TACTGAGCTAGAGCTTCAGC+AGG | + | chr5.3:55824527-55824546 | MS.gene009896:CDS | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5.3:55823894-55823913 | MS.gene009896:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5.3:55823841-55823860 | None:intergenic | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5.3:55823924-55823943 | MS.gene009896:CDS | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5.3:55823923-55823942 | MS.gene009896:CDS | 50.0% | |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5.3:55823988-55824007 | MS.gene009896:CDS | 50.0% |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5.3:55824540-55824559 | MS.gene009896:CDS | 50.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5.3:55823573-55823592 | MS.gene009896:CDS | 50.0% |
| ! | TGCTGAAGCTCTAGCTCAGT+AGG | - | chr5.3:55824528-55824547 | None:intergenic | 50.0% |
| !! | GCTGGAATCTTCTGGAGTAC+TGG | + | chr5.3:55823973-55823992 | MS.gene009896:CDS | 50.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5.3:55823904-55823923 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5.3:55823909-55823928 | None:intergenic | 55.0% | |
| GCTGGAACTTTCGCTGGAGA+TGG | + | chr5.3:55824492-55824511 | MS.gene009896:CDS | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5.3:55824245-55824264 | MS.gene009896:intron | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5.3:55824539-55824558 | MS.gene009896:CDS | 55.0% |
| ! | TATGGCGCTGGAACTTTCGC+TGG | + | chr5.3:55824486-55824505 | MS.gene009896:CDS | 55.0% |
| ACCCGACACGACATGGACAC+AGG | - | chr5.3:55824250-55824269 | None:intergenic | 60.0% | |
| CACGAACACCCGACACGACA+TGG | - | chr5.3:55824257-55824276 | None:intergenic | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5.3:55824246-55824265 | MS.gene009896:intron | 60.0% | |
| GTCGTGTCGGGTGTTCGTGT+TGG | + | chr5.3:55824258-55824277 | MS.gene009896:intron | 60.0% | |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5.3:55823993-55824012 | MS.gene009896:CDS | 60.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5.3:55823955-55823974 | MS.gene009896:CDS | 65.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5.3:55823943-55823962 | MS.gene009896:CDS | 65.0% | |
| GGAGGCTCGGCTTATGGCGC+TGG | + | chr5.3:55824474-55824493 | MS.gene009896:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55823377 | 55824602 | 55823377 | ID=MS.gene009896 |
| chr5.3 | mRNA | 55823377 | 55824602 | 55823377 | ID=MS.gene009896.t1;Parent=MS.gene009896 |
| chr5.3 | exon | 55823377 | 55823402 | 55823377 | ID=MS.gene009896.t1.exon1;Parent=MS.gene009896.t1 |
| chr5.3 | CDS | 55823377 | 55823402 | 55823377 | ID=cds.MS.gene009896.t1;Parent=MS.gene009896.t1 |
| chr5.3 | exon | 55823540 | 55823633 | 55823540 | ID=MS.gene009896.t1.exon2;Parent=MS.gene009896.t1 |
| chr5.3 | CDS | 55823540 | 55823633 | 55823540 | ID=cds.MS.gene009896.t1;Parent=MS.gene009896.t1 |
| chr5.3 | exon | 55823760 | 55824025 | 55823760 | ID=MS.gene009896.t1.exon3;Parent=MS.gene009896.t1 |
| chr5.3 | CDS | 55823760 | 55824025 | 55823760 | ID=cds.MS.gene009896.t1;Parent=MS.gene009896.t1 |
| chr5.3 | exon | 55824377 | 55824602 | 55824377 | ID=MS.gene009896.t1.exon4;Parent=MS.gene009896.t1 |
| chr5.3 | CDS | 55824377 | 55824602 | 55824377 | ID=cds.MS.gene009896.t1;Parent=MS.gene009896.t1 |
| Gene Sequence |
| Protein sequence |
