AlfalfaGEDB | MS.gene28697

M. sativa cultivar XinJiangDaYe / MS.gene28697

KEGG: K03809
GO: GO:0000166 GO:0003674 GO:0003824 GO:0003955 GO:0005488 GO:0010181 GO:0016491 GO:0016651 GO:0016655 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF03358.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28697.t1	RHN62566.1	99	192	2	0	1	192	47	238	1.10E-103	386

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28697.t1	Q6NQE2	84.7	190	29	0	1	190	12	201	3.3e-90	332.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28697.t1	A0A072UP63	99.0	192	2	0	1	192	1	192	7.6e-104	386.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene41828	MS.gene28697	PPI
MS.gene88772	MS.gene28697	PPI
MS.gene59475	MS.gene28697	PPI
MS.gene28697	MS.gene028582	PPI
MS.gene042521	MS.gene28697	PPI
MS.gene43787	MS.gene28697	PPI
MS.gene013866	MS.gene28697	PPI
MS.gene64777	MS.gene28697	PPI
MS.gene68071	MS.gene28697	PPI
MS.gene28697	MS.gene40165	PPI
MS.gene010630	MS.gene28697	PPI
MS.gene009896	MS.gene28697	PPI
MS.gene28697	MS.gene44880	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28697.t1	MTR_4g091900	98.958	192	2	0	1	192	13	204	4.16e-137	381
MS.gene28697.t1	MTR_4g091900	98.958	192	2	0	1	192	1	192	7.06e-137	380
MS.gene28697.t1	MTR_2g081810	83.598	189	31	0	1	189	12	200	4.60e-116	328
MS.gene28697.t1	MTR_8g466030	82.011	189	34	0	1	189	12	200	1.73e-112	319
MS.gene28697.t1	MTR_2g011080	76.042	192	46	0	1	192	12	203	1.03e-105	302
MS.gene28697.t1	MTR_2g011080	76.042	192	46	0	1	192	7	198	1.20e-105	301
MS.gene28697.t1	MTR_5g070030	68.947	190	58	1	1	189	13	202	1.90e-93	271
MS.gene28697.t1	MTR_4g069250	66.138	189	63	1	1	188	60	248	8.52e-86	253
MS.gene28697.t1	MTR_5g019620	64.062	192	68	1	1	191	61	252	1.98e-84	250
MS.gene28697.t1	MTR_2g011080	74.342	152	39	0	41	192	1	152	4.07e-80	235
MS.gene28697.t1	MTR_4g091890	90.833	120	7	1	73	192	1	116	8.29e-74	218
MS.gene28697.t1	MTR_8g466080	79.310	116	24	0	74	189	1	116	3.91e-63	191
MS.gene28697.t1	MTR_8g466110	56.452	124	28	3	41	164	1	98	8.06e-35	119
MS.gene28697.t1	MTR_8g466150	56.452	124	28	3	41	164	1	98	8.06e-35	119

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28697.t1	AT4G27270	84.737	190	29	0	1	190	12	201	2.17e-117	332
MS.gene28697.t1	AT4G27270	84.737	190	29	0	1	190	1	190	3.80e-117	330
MS.gene28697.t1	AT4G27270	84.737	190	29	0	1	190	1	190	3.80e-117	330
MS.gene28697.t1	AT5G54500	83.770	191	31	0	1	191	12	202	5.69e-117	330
MS.gene28697.t1	AT4G27270	86.000	150	21	0	41	190	1	150	1.30e-92	267
MS.gene28697.t1	AT5G54500	82.781	151	26	0	1	151	12	162	1.22e-89	263
MS.gene28697.t1	AT5G58800	64.737	190	66	1	1	189	13	202	4.67e-89	260
MS.gene28697.t1	AT5G58800	64.737	190	66	1	1	189	13	202	4.67e-89	260
MS.gene28697.t1	AT4G36750	67.196	189	61	1	1	188	82	270	9.05e-87	256

Find 68 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGCTTCCCGACAAGATT+TGG	0.247346	4.3:-22342620	MS.gene28697:CDS
ACCTCCGCAGGCAGAGTTTC+AGG	0.301695	4.3:+22342725	None:intergenic
CTCTGCCTGCGGAGGTCGTT+GGG	0.320468	4.3:-22342718	MS.gene28697:CDS
ATAATTGGCACATCACTCTT+TGG	0.334809	4.3:+22342680	None:intergenic
GAGGCTGATGGTTTGTTGCT+TGG	0.342120	4.3:-22342638	MS.gene28697:CDS
AGCGCATCAGGTGTAATAAT+TGG	0.347422	4.3:+22342665	None:intergenic
CATCAGGGGAAGTACTTTGC+TGG	0.357702	4.3:-22341935	MS.gene28697:CDS
TGGCGTACTCAGGCACTTGC+AGG	0.358990	4.3:-22342548	MS.gene28697:CDS
GTGCCCATTGGTTACACATT+TGG	0.364441	4.3:-22342070	MS.gene28697:CDS
CACGAGACAGCCTACCGAAT+TGG	0.374655	4.3:-22341975	MS.gene28697:CDS
GTTTGAGATGGAGAGCATAA+AGG	0.387084	4.3:-22342038	MS.gene28697:CDS
TTTGAGATGGAGAGCATAAA+GGG	0.400626	4.3:-22342037	MS.gene28697:CDS
TGCGGAGGTCGTTGGGAAGA+TGG	0.403064	4.3:-22342711	MS.gene28697:CDS
GGGTGGTTCCCCATATGGTT+CGG	0.423157	4.3:-22342017	MS.gene28697:CDS
GCGAAGGTTCCCGAACCATA+TGG	0.433025	4.3:+22342007	None:intergenic
ACAGCCTACCGAATTGGAAT+TGG	0.433151	4.3:-22341969	MS.gene28697:CDS
GGTGGTTCCCCATATGGTTC+GGG	0.436267	4.3:-22342016	MS.gene28697:CDS
TCAGCCTCAGGTAGCGCATC+AGG	0.442003	4.3:+22342653	None:intergenic
TCTCGTGCCGTCTCCGGCGA+AGG	0.448926	4.3:+22341991	None:intergenic
GCGGAGGTCGTTGGGAAGAT+GGG	0.453021	4.3:-22342710	MS.gene28697:CDS
AAAGCATTCCTCGATGCAAC+TGG	0.456257	4.3:-22342578	MS.gene28697:CDS
ATAAAGGGTGGTTCCCCATA+TGG	0.462146	4.3:-22342022	MS.gene28697:CDS
CCCGACAAGATTTGGAATGA+TGG	0.467275	4.3:-22342612	MS.gene28697:CDS
ATTGGTTACACATTTGGTGC+TGG	0.468517	4.3:-22342064	MS.gene28697:CDS
ATTGGCTCAAGCTTTCCATC+AGG	0.473009	4.3:-22341951	MS.gene28697:CDS
CGAAGGTTCCCGAACCATAT+GGG	0.473122	4.3:+22342008	None:intergenic
TATGGTTCGGGAACCTTCGC+CGG	0.481405	4.3:-22342004	MS.gene28697:CDS
AGGCTGTCTCGTGCCGTCTC+CGG	0.489257	4.3:+22341985	None:intergenic
CCATCATTCCAAATCTTGTC+GGG	0.494553	4.3:+22342612	None:intergenic
AGCTTGAGCCAATTCCAATT+CGG	0.496465	4.3:+22341961	None:intergenic
TTTAGTTACTATTCTATGTA+CGG	0.496466	4.3:-22343064	None:intergenic
GCCATCATTCCAAATCTTGT+CGG	0.505362	4.3:+22342611	None:intergenic
TTTAAAAGGCGCGGCTTCCG+TGG	0.512381	4.3:-22343014	MS.gene28697:CDS
ATCTTCCCAACGACCTCCGC+AGG	0.515536	4.3:+22342713	None:intergenic
ACTCTGCCTGCGGAGGTCGT+TGG	0.519015	4.3:-22342719	MS.gene28697:CDS
TCGGGAACCTTCGCCGGAGA+CGG	0.520100	4.3:-22341998	MS.gene28697:CDS
AAAGGCGCGGCTTCCGTGGA+AGG	0.522189	4.3:-22343010	MS.gene28697:CDS
TCGATGCAACTGGTGGCCTA+TGG	0.530931	4.3:-22342568	MS.gene28697:CDS
ATTGGCACATCACTCTTTGG+AGG	0.535259	4.3:+22342683	None:intergenic
GCACCAAATGTGTAACCAAT+GGG	0.537151	4.3:+22342067	None:intergenic
AGTAGAAGCAAAGCTATGGC+AGG	0.545320	4.3:-22342987	MS.gene28697:intron
AGCAACAAACCATCAGCCTC+AGG	0.546743	4.3:+22342641	None:intergenic
GCACTTGCAGGAAAGCCTGC+AGG	0.551589	4.3:-22342536	MS.gene28697:CDS
GTGCTGTAAAAGATTCCTGC+AGG	0.556948	4.3:+22342521	None:intergenic
CTTTGCTTCTACTCCTTCCA+CGG	0.562351	4.3:+22342997	None:intergenic
ATCACTCAGCTTGCTCACCA+TGG	0.564969	4.3:-22342103	MS.gene28697:CDS
AGCACCAAATGTGTAACCAA+TGG	0.574155	4.3:+22342066	None:intergenic
TGGTGCTGGTATGTTTGAGA+TGG	0.575960	4.3:-22342050	MS.gene28697:CDS
AAGGAGTAGAAGCAAAGCTA+TGG	0.577868	4.3:-22342991	MS.gene28697:CDS
TGGTGGCCTATGGCGTACTC+AGG	0.578013	4.3:-22342558	MS.gene28697:CDS
CAGCAAAGTACTTCCCCTGA+TGG	0.579078	4.3:+22341936	None:intergenic
TGGCTCAAGCTTTCCATCAG+GGG	0.583615	4.3:-22341949	MS.gene28697:CDS
TTGGCTCAAGCTTTCCATCA+GGG	0.591341	4.3:-22341950	MS.gene28697:CDS
GGCATTGCAAAGAAGCTCAA+AGG	0.592964	4.3:-22341914	MS.gene28697:CDS
CAAGTGCCTGAGTACGCCAT+AGG	0.599625	4.3:+22342552	None:intergenic
ATGGTGAGCAAGCTGAGTGA+TGG	0.600815	4.3:+22342105	None:intergenic
TACAGCACTGGTTCTCAAGG+AGG	0.602179	4.3:-22342506	MS.gene28697:CDS
TGAGCCAATTCCAATTCGGT+AGG	0.602254	4.3:+22341965	None:intergenic
GAGGTCGTTGGGAAGATGGG+AGG	0.615091	4.3:-22342707	MS.gene28697:CDS
ACCTGAAACTCTGCCTGCGG+AGG	0.615512	4.3:-22342726	MS.gene28697:CDS
GAAGGTTCCCGAACCATATG+GGG	0.617327	4.3:+22342009	None:intergenic
AGCACTGGTTCTCAAGGAGG+AGG	0.618456	4.3:-22342503	MS.gene28697:CDS
GATGCGCTACCTGAGGCTGA+TGG	0.631007	4.3:-22342650	MS.gene28697:CDS
GCATTCCTCGATGCAACTGG+TGG	0.646835	4.3:-22342575	MS.gene28697:CDS
TACACCTGATGCGCTACCTG+AGG	0.657213	4.3:-22342657	MS.gene28697:CDS
GGTACCTGAAACTCTGCCTG+CGG	0.684253	4.3:-22342729	MS.gene28697:CDS
GAGATGGAGAGCATAAAGGG+TGG	0.732219	4.3:-22342034	MS.gene28697:CDS
ATAGGCCACCAGTTGCATCG+AGG	0.761372	4.3:+22342570	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATATAAACAGTTTAAATT+TGG	+	chr4.3:22342684-22342703	None:intergenic	10.0%
!!!	TTATTTTGAACATTTTAATT+TGG	+	chr4.3:22342092-22342111	None:intergenic	10.0%
!!!	TTTTTCTTTAATTAAGAAAT+GGG	+	chr4.3:22342528-22342547	None:intergenic	10.0%
!!	ACTGTTTATATATAAGTTAT+AGG	-	chr4.3:22342691-22342710	MS.gene28697:CDS	15.0%
!!	CATTTCTTAATTAAAGAAAA+AGG	-	chr4.3:22342527-22342546	MS.gene28697:CDS	15.0%
!!	TAAAATAAGTTAATCCAAAT+AGG	-	chr4.3:22342783-22342802	MS.gene28697:intron	15.0%
!!!	CTTTTTCTTTAATTAAGAAA+TGG	+	chr4.3:22342529-22342548	None:intergenic	15.0%
!	ACCATCTTAAAGATATCTAA+TGG	+	chr4.3:22342115-22342134	None:intergenic	25.0%
!	AGCAAACAAGCTTAAATATT+TGG	-	chr4.3:22342573-22342592	MS.gene28697:CDS	25.0%
!	GATGATAATATTGTAAATGC+AGG	+	chr4.3:22342193-22342212	None:intergenic	25.0%
!	TATTATCATCTGATACGTAT+AGG	-	chr4.3:22342203-22342222	MS.gene28697:intron	25.0%
!	TCAATCAATCTTTACTTGTT+TGG	-	chr4.3:22342056-22342075	MS.gene28697:CDS	25.0%
!	TGAAATCAGAAAATCAATCA+GGG	+	chr4.3:22342809-22342828	None:intergenic	25.0%
!	TTGAAATCAGAAAATCAATC+AGG	+	chr4.3:22342810-22342829	None:intergenic	25.0%
!!	ACCATTAGATATCTTTAAGA+TGG	-	chr4.3:22342111-22342130	MS.gene28697:CDS	25.0%
	AAACAAAACTGAGTGAGATT+CGG	+	chr4.3:22342499-22342518	None:intergenic	30.0%
	TTCTGATTTCAAAATTCTGC+AGG	-	chr4.3:22342818-22342837	MS.gene28697:intron	30.0%
!	ACATACCACATTTTCTCTTT+AGG	-	chr4.3:22342014-22342033	MS.gene28697:CDS	30.0%
!	CATACCACATTTTCTCTTTA+GGG	-	chr4.3:22342015-22342034	MS.gene28697:CDS	30.0%
!	CTAGCTCAAGAGATTTTAAA+AGG	-	chr4.3:22341925-22341944	MS.gene28697:CDS	30.0%
!	TTGGTAGTAATAAGTCTTTC+TGG	-	chr4.3:22341989-22342008	MS.gene28697:CDS	30.0%
	AAAATCAATCAGGGCCTATT+TGG	+	chr4.3:22342800-22342819	None:intergenic	35.0%
	AACAAAACTGAGTGAGATTC+GGG	+	chr4.3:22342498-22342517	None:intergenic	35.0%
	AGTTCCCTAAAGAGAAAATG+TGG	+	chr4.3:22342022-22342041	None:intergenic	35.0%
	ATAATTGGCACATCACTCTT+TGG	+	chr4.3:22342276-22342295	None:intergenic	35.0%
!	TGCAATCATTCGAAAAGCAT+TGG	-	chr4.3:22342156-22342175	MS.gene28697:intron	35.0%
!	TTTGAGATGGAGAGCATAAA+GGG	-	chr4.3:22342916-22342935	MS.gene28697:intron	35.0%
!!	GCAATCATTCGAAAAGCATT+GGG	-	chr4.3:22342157-22342176	MS.gene28697:intron	35.0%
!!	TCAAGAGATTTTAAAAGGCG+CGG	-	chr4.3:22341930-22341949	MS.gene28697:CDS	35.0%
	AAGGAGTAGAAGCAAAGCTA+TGG	-	chr4.3:22341962-22341981	MS.gene28697:CDS	40.0%
	AGCACCAAATGTGTAACCAA+TGG	+	chr4.3:22342890-22342909	None:intergenic	40.0%
	AGCGCATCAGGTGTAATAAT+TGG	+	chr4.3:22342291-22342310	None:intergenic	40.0%
	AGCTTGAGCCAATTCCAATT+CGG	+	chr4.3:22342995-22343014	None:intergenic	40.0%
	CCATCATTCCAAATCTTGTC+GGG	+	chr4.3:22342344-22342363	None:intergenic	40.0%
	GCACCAAATGTGTAACCAAT+GGG	+	chr4.3:22342889-22342908	None:intergenic	40.0%
	GCCATCATTCCAAATCTTGT+CGG	+	chr4.3:22342345-22342364	None:intergenic	40.0%
	TGGGCACAAAAATCATTCCA+TGG	+	chr4.3:22342870-22342889	None:intergenic	40.0%
	TTTCGAATGATTGCAGAGGA+GGG	+	chr4.3:22342151-22342170	None:intergenic	40.0%
!	GGAATGATTTTTGTGCCCAT+TGG	-	chr4.3:22342871-22342890	MS.gene28697:intron	40.0%
!	GTTTGAGATGGAGAGCATAA+AGG	-	chr4.3:22342915-22342934	MS.gene28697:intron	40.0%
!	TGCTTTTCGAATGATTGCAG+AGG	+	chr4.3:22342155-22342174	None:intergenic	40.0%
!	TTTTCGAATGATTGCAGAGG+AGG	+	chr4.3:22342152-22342171	None:intergenic	40.0%
!!	ATTGGTTACACATTTGGTGC+TGG	-	chr4.3:22342889-22342908	MS.gene28697:intron	40.0%
!!!	CTCACTCAGTTTTGTTTCGA+AGG	-	chr4.3:22342502-22342521	MS.gene28697:CDS	40.0%
!!!	TTTTACAGCACTGGTTCTCA+AGG	-	chr4.3:22342444-22342463	MS.gene28697:intron	40.0%
	ACAGCCTACCGAATTGGAAT+TGG	-	chr4.3:22342984-22343003	MS.gene28697:intron	45.0%
	AGTAGAAGCAAAGCTATGGC+AGG	-	chr4.3:22341966-22341985	MS.gene28697:CDS	45.0%
	ATAAAGGGTGGTTCCCCATA+TGG	-	chr4.3:22342931-22342950	MS.gene28697:intron	45.0%
	ATTGGCACATCACTCTTTGG+AGG	+	chr4.3:22342273-22342292	None:intergenic	45.0%
	CTTTGCTTCTACTCCTTCCA+CGG	+	chr4.3:22341959-22341978	None:intergenic	45.0%
	GAGTGAGATTCGGGAACTTA+CGG	+	chr4.3:22342489-22342508	None:intergenic	45.0%
	GGCATTGCAAAGAAGCTCAA+AGG	-	chr4.3:22343039-22343058	MS.gene28697:CDS	45.0%
	GTGCTGTAAAAGATTCCTGC+AGG	+	chr4.3:22342435-22342454	None:intergenic	45.0%
	TGAGCCAATTCCAATTCGGT+AGG	+	chr4.3:22342991-22343010	None:intergenic	45.0%
	TTGGCTCAAGCTTTCCATCA+GGG	-	chr4.3:22343003-22343022	MS.gene28697:CDS	45.0%
!	AAAGCATTCCTCGATGCAAC+TGG	-	chr4.3:22342375-22342394	MS.gene28697:intron	45.0%
!	ATTGGCTCAAGCTTTCCATC+AGG	-	chr4.3:22343002-22343021	MS.gene28697:CDS	45.0%
!	CCCGACAAGATTTGGAATGA+TGG	-	chr4.3:22342341-22342360	MS.gene28697:intron	45.0%
!	GCAGGAATCTTTTACAGCAC+TGG	-	chr4.3:22342435-22342454	MS.gene28697:intron	45.0%
!	GTGCCCATTGGTTACACATT+TGG	-	chr4.3:22342883-22342902	MS.gene28697:intron	45.0%
!	TTGCAGAGGAGGGTATAACT+TGG	+	chr4.3:22342141-22342160	None:intergenic	45.0%
!!	TGGTGCTGGTATGTTTGAGA+TGG	-	chr4.3:22342903-22342922	MS.gene28697:intron	45.0%
!!!	ACTTATTTTAATTTATATAT+TGG	+	chr4.3:22342773-22342792	None:intergenic	5.0%
	AGCAACAAACCATCAGCCTC+AGG	+	chr4.3:22342315-22342334	None:intergenic	50.0%
	ATGGTGAGCAAGCTGAGTGA+TGG	+	chr4.3:22342851-22342870	None:intergenic	50.0%
	CGAAGGTTCCCGAACCATAT+GGG	+	chr4.3:22342948-22342967	None:intergenic	50.0%
	CTTGGCTTCCCGACAAGATT+TGG	-	chr4.3:22342333-22342352	MS.gene28697:intron	50.0%
	GAAGCAAAGCTATGGCAGGT+TGG	-	chr4.3:22341970-22341989	MS.gene28697:CDS	50.0%
	GAAGGTTCCCGAACCATATG+GGG	+	chr4.3:22342947-22342966	None:intergenic	50.0%
	TGGCTCAAGCTTTCCATCAG+GGG	-	chr4.3:22343004-22343023	MS.gene28697:CDS	50.0%
!	ATCACTCAGCTTGCTCACCA+TGG	-	chr4.3:22342850-22342869	MS.gene28697:intron	50.0%
!	CAGCAAAGTACTTCCCCTGA+TGG	+	chr4.3:22343020-22343039	None:intergenic	50.0%
!	GAGATGGAGAGCATAAAGGG+TGG	-	chr4.3:22342919-22342938	MS.gene28697:intron	50.0%
!!	CATCAGGGGAAGTACTTTGC+TGG	-	chr4.3:22343018-22343037	MS.gene28697:CDS	50.0%
!!	GAGGCTGATGGTTTGTTGCT+TGG	-	chr4.3:22342315-22342334	MS.gene28697:intron	50.0%
!!	TACAGCACTGGTTCTCAAGG+AGG	-	chr4.3:22342447-22342466	MS.gene28697:intron	50.0%
	ATAGGCCACCAGTTGCATCG+AGG	+	chr4.3:22342386-22342405	None:intergenic	55.0%
	CAAGTGCCTGAGTACGCCAT+AGG	+	chr4.3:22342404-22342423	None:intergenic	55.0%
	CACGAGACAGCCTACCGAAT+TGG	-	chr4.3:22342978-22342997	MS.gene28697:intron	55.0%
	GCATTCCTCGATGCAACTGG+TGG	-	chr4.3:22342378-22342397	MS.gene28697:intron	55.0%
	GCGAAGGTTCCCGAACCATA+TGG	+	chr4.3:22342949-22342968	None:intergenic	55.0%
	GGGTGGTTCCCCATATGGTT+CGG	-	chr4.3:22342936-22342955	MS.gene28697:intron	55.0%
	GGTACCTGAAACTCTGCCTG+CGG	-	chr4.3:22342224-22342243	MS.gene28697:intron	55.0%
	GGTGGTTCCCCATATGGTTC+GGG	-	chr4.3:22342937-22342956	MS.gene28697:intron	55.0%
	TACACCTGATGCGCTACCTG+AGG	-	chr4.3:22342296-22342315	MS.gene28697:intron	55.0%
	TCGATGCAACTGGTGGCCTA+TGG	-	chr4.3:22342385-22342404	MS.gene28697:intron	55.0%
!	TATGGTTCGGGAACCTTCGC+CGG	-	chr4.3:22342949-22342968	MS.gene28697:intron	55.0%
!	TTTAAAAGGCGCGGCTTCCG+TGG	-	chr4.3:22341939-22341958	MS.gene28697:CDS	55.0%
!!	AGCACTGGTTCTCAAGGAGG+AGG	-	chr4.3:22342450-22342469	MS.gene28697:intron	55.0%
	ACCTCCGCAGGCAGAGTTTC+AGG	+	chr4.3:22342231-22342250	None:intergenic	60.0%
	ACCTGAAACTCTGCCTGCGG+AGG	-	chr4.3:22342227-22342246	MS.gene28697:intron	60.0%
	ATCTTCCCAACGACCTCCGC+AGG	+	chr4.3:22342243-22342262	None:intergenic	60.0%
	GAGGTCGTTGGGAAGATGGG+AGG	-	chr4.3:22342246-22342265	MS.gene28697:intron	60.0%
	GATGCGCTACCTGAGGCTGA+TGG	-	chr4.3:22342303-22342322	MS.gene28697:intron	60.0%
	GCACTTGCAGGAAAGCCTGC+AGG	-	chr4.3:22342417-22342436	MS.gene28697:intron	60.0%
	GCGGAGGTCGTTGGGAAGAT+GGG	-	chr4.3:22342243-22342262	MS.gene28697:intron	60.0%
	TCAGCCTCAGGTAGCGCATC+AGG	+	chr4.3:22342303-22342322	None:intergenic	60.0%
	TGCGGAGGTCGTTGGGAAGA+TGG	-	chr4.3:22342242-22342261	MS.gene28697:intron	60.0%
	TGGCGTACTCAGGCACTTGC+AGG	-	chr4.3:22342405-22342424	MS.gene28697:intron	60.0%
	TGGTGGCCTATGGCGTACTC+AGG	-	chr4.3:22342395-22342414	MS.gene28697:intron	60.0%
	ACTCTGCCTGCGGAGGTCGT+TGG	-	chr4.3:22342234-22342253	MS.gene28697:intron	65.0%
	AGGCTGTCTCGTGCCGTCTC+CGG	+	chr4.3:22342971-22342990	None:intergenic	65.0%
	CTCTGCCTGCGGAGGTCGTT+GGG	-	chr4.3:22342235-22342254	MS.gene28697:intron	65.0%
	TCGGGAACCTTCGCCGGAGA+CGG	-	chr4.3:22342955-22342974	MS.gene28697:intron	65.0%
!	AAAGGCGCGGCTTCCGTGGA+AGG	-	chr4.3:22341943-22341962	MS.gene28697:CDS	65.0%
	TCTCGTGCCGTCTCCGGCGA+AGG	+	chr4.3:22342965-22342984	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	22341904	22343071	22341904	ID=MS.gene28697
chr4.3	mRNA	22341904	22343071	22341904	ID=MS.gene28697.t1;Parent=MS.gene28697
chr4.3	exon	22342988	22343071	22342988	ID=MS.gene28697.t1.exon1;Parent=MS.gene28697.t1
chr4.3	CDS	22342988	22343071	22342988	ID=cds.MS.gene28697.t1;Parent=MS.gene28697.t1
chr4.3	exon	22342488	22342750	22342488	ID=MS.gene28697.t1.exon2;Parent=MS.gene28697.t1
chr4.3	CDS	22342488	22342750	22342488	ID=cds.MS.gene28697.t1;Parent=MS.gene28697.t1
chr4.3	exon	22341904	22342135	22341904	ID=MS.gene28697.t1.exon3;Parent=MS.gene28697.t1
chr4.3	CDS	22341904	22342135	22341904	ID=cds.MS.gene28697.t1;Parent=MS.gene28697.t1

Gene Sequence

>MS.gene28697

ATGTACGGACATGTTGAGAAGCTAGCTCAAGAGATTTTAAAAGGCGCGGCTTCCGTGGAAGGAGTAGAAGCAAAGCTATGGCAGGTTGGTAGTAATAAGTCTTTCTGGTTACATACCACATTTTCTCTTTAGGGAACTTGTTCTAAGTTTTTTCAATCAATCTTTACTTGTTTGGCTTTAAGTCACCAAATTAAAATGTTCAAAATAACCATTAGATATCTTTAAGATGGTTAACCAAGTTATACCCTCCTCTGCAATCATTCGAAAAGCATTGGGAAATTTTTATCCTGCATTTACAATATTATCATCTGATACGTATAGGTACCTGAAACTCTGCCTGCGGAGGTCGTTGGGAAGATGGGAGGACCTCCAAAGAGTGATGTGCCAATTATTACACCTGATGCGCTACCTGAGGCTGATGGTTTGTTGCTTGGCTTCCCGACAAGATTTGGAATGATGGCTGCTCAGTTTAAAGCATTCCTCGATGCAACTGGTGGCCTATGGCGTACTCAGGCACTTGCAGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGAGGACAAGAGACTACACCGTAAGTTCCCGAATCTCACTCAGTTTTGTTTCGAAGGCCCATTTCTTAATTAAAGAAAAAGGCAATTTTCTTTAATAAAAGCTCAAGCAAACAAGCTTAAATATTTGGATAAACAACTTAATTAAGCGCTTATAGCATAAACACTTATCATATAAGTGTTTGTGTATAAATCATTTCTTTACAAAAAGATAAACCAAATTTAAACTGTTTATATATAAGTTATAGGTTACTTTCATAAGCTATTTCTGTAATCTCTCTCAAACAGTCTCACAATTGCTTATACCAATATATAAATTAAAATAAGTTAATCCAAATAGGCCCTGATTGATTTTCTGATTTCAAAATTCTGCAGGTTGACATCCATCACTCAGCTTGCTCACCATGGAATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGTATGTTTGAGATGGAGAGCATAAAGGGTGGTTCCCCATATGGTTCGGGAACCTTCGCCGGAGACGGCACGAGACAGCCTACCGAATTGGAATTGGCTCAAGCTTTCCATCAGGGGAAGTACTTTGCTGGCATTGCAAAGAAGCTCAAAGGATCTCAGTGA

Protein sequence

>MS.gene28697.t1

MYGHVEKLAQEILKGAASVEGVEAKLWQVPETLPAEVVGKMGGPPKSDVPIITPDALPEADGLLLGFPTRFGMMAAQFKAFLDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLAHHGMIFVPIGYTFGAGMFEMESIKGGSPYGSGTFAGDGTRQPTELELAQAFHQGKYFAGIAKKLKGSQ