AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40165

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40165.t1 MTR_4g091900 98.958 192 2 0 1 192 13 204 4.16e-137 381
MS.gene40165.t1 MTR_4g091900 98.958 192 2 0 1 192 1 192 7.06e-137 380
MS.gene40165.t1 MTR_2g081810 83.598 189 31 0 1 189 12 200 4.60e-116 328
MS.gene40165.t1 MTR_8g466030 82.011 189 34 0 1 189 12 200 1.73e-112 319
MS.gene40165.t1 MTR_2g011080 76.042 192 46 0 1 192 12 203 1.03e-105 302
MS.gene40165.t1 MTR_2g011080 76.042 192 46 0 1 192 7 198 1.20e-105 301
MS.gene40165.t1 MTR_5g070030 68.947 190 58 1 1 189 13 202 1.90e-93 271
MS.gene40165.t1 MTR_4g069250 66.138 189 63 1 1 188 60 248 8.52e-86 253
MS.gene40165.t1 MTR_5g019620 64.062 192 68 1 1 191 61 252 1.98e-84 250
MS.gene40165.t1 MTR_2g011080 74.342 152 39 0 41 192 1 152 4.07e-80 235
MS.gene40165.t1 MTR_4g091890 90.833 120 7 1 73 192 1 116 8.29e-74 218
MS.gene40165.t1 MTR_8g466080 79.310 116 24 0 74 189 1 116 3.91e-63 191
MS.gene40165.t1 MTR_8g466110 56.452 124 28 3 41 164 1 98 8.06e-35 119
MS.gene40165.t1 MTR_8g466150 56.452 124 28 3 41 164 1 98 8.06e-35 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40165.t1 AT4G27270 84.737 190 29 0 1 190 12 201 2.17e-117 332
MS.gene40165.t1 AT4G27270 84.737 190 29 0 1 190 1 190 3.80e-117 330
MS.gene40165.t1 AT4G27270 84.737 190 29 0 1 190 1 190 3.80e-117 330
MS.gene40165.t1 AT5G54500 83.770 191 31 0 1 191 12 202 5.69e-117 330
MS.gene40165.t1 AT4G27270 86.000 150 21 0 41 190 1 150 1.30e-92 267
MS.gene40165.t1 AT5G54500 82.781 151 26 0 1 151 12 162 1.22e-89 263
MS.gene40165.t1 AT5G58800 64.737 190 66 1 1 189 13 202 4.67e-89 260
MS.gene40165.t1 AT5G58800 64.737 190 66 1 1 189 13 202 4.67e-89 260
MS.gene40165.t1 AT4G36750 67.196 189 61 1 1 188 82 270 9.05e-87 256

Find 70 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCTTCCCGACAAGATT+TGG 0.247346 4.2:-20613018 MS.gene40165:CDS
ACCTCCGCAGGCAGAGTTTC+AGG 0.301695 4.2:+20613123 None:intergenic
CTCTGCCTGCGGAGGTCGTT+GGG 0.320468 4.2:-20613116 MS.gene40165:CDS
ATAATTGGCACATCACTCTT+TGG 0.334809 4.2:+20613078 None:intergenic
GAGGCTGATGGTTTGTTGCT+TGG 0.342120 4.2:-20613036 MS.gene40165:CDS
AGCGCATCAGGTGTAATAAT+TGG 0.347422 4.2:+20613063 None:intergenic
CATCAGGGGAAGTACTTTGC+TGG 0.357702 4.2:-20612333 MS.gene40165:CDS
TGGCGTACTCAGGCACTTGC+AGG 0.358990 4.2:-20612946 MS.gene40165:CDS
GTGCCCATTGGTTACACATT+TGG 0.364441 4.2:-20612468 MS.gene40165:CDS
TGCTCAGTTTAAAGCATTCC+TGG 0.369486 4.2:-20612986 MS.gene40165:CDS
GTTTGAGATGGAGAGCATAA+AGG 0.387084 4.2:-20612436 MS.gene40165:CDS
TTTGAGATGGAGAGCATAAA+GGG 0.400626 4.2:-20612435 MS.gene40165:CDS
TGCGGAGGTCGTTGGGAAGA+TGG 0.403064 4.2:-20613109 MS.gene40165:CDS
GGGTGGTTCCCCATATGGTT+CGG 0.423157 4.2:-20612415 MS.gene40165:CDS
GCGAAGGTTCCCGAACCATA+TGG 0.433025 4.2:+20612405 None:intergenic
ACAGCCTACCGAGTTGGAAT+TGG 0.433561 4.2:-20612367 MS.gene40165:CDS
GGTGGTTCCCCATATGGTTC+GGG 0.436267 4.2:-20612414 MS.gene40165:CDS
TCAGCCTCAGGTAGCGCATC+AGG 0.442003 4.2:+20613051 None:intergenic
TCTCGTGCCGTCTCCGGCGA+AGG 0.448926 4.2:+20612389 None:intergenic
GCGGAGGTCGTTGGGAAGAT+GGG 0.453021 4.2:-20613108 MS.gene40165:CDS
AAAGCATTCCTGGATGCAAC+TGG 0.456257 4.2:-20612976 MS.gene40165:CDS
ATAAAGGGTGGTTCCCCATA+TGG 0.462146 4.2:-20612420 MS.gene40165:CDS
CCCGACAAGATTTGGAATGA+TGG 0.467275 4.2:-20613010 MS.gene40165:CDS
ATTGGTTACACATTTGGTGC+TGG 0.468517 4.2:-20612462 MS.gene40165:CDS
ATTGGCTCAAGCTTTCCATC+AGG 0.473009 4.2:-20612349 MS.gene40165:CDS
CGAAGGTTCCCGAACCATAT+GGG 0.473122 4.2:+20612406 None:intergenic
TATGGTTCGGGAACCTTCGC+CGG 0.481405 4.2:-20612402 MS.gene40165:CDS
AGGCTGTCTCGTGCCGTCTC+CGG 0.489257 4.2:+20612383 None:intergenic
CCATCATTCCAAATCTTGTC+GGG 0.494553 4.2:+20613010 None:intergenic
TTTAGTTACTATTCTATGTA+CGG 0.496466 4.2:-20613462 None:intergenic
GCCATCATTCCAAATCTTGT+CGG 0.505362 4.2:+20613009 None:intergenic
ATCTTCCCAACGACCTCCGC+AGG 0.515536 4.2:+20613111 None:intergenic
ACTCTGCCTGCGGAGGTCGT+TGG 0.519015 4.2:-20613117 MS.gene40165:CDS
TCGGGAACCTTCGCCGGAGA+CGG 0.520100 4.2:-20612396 MS.gene40165:CDS
CTTTGCTTCTACTCCTTCCA+CGG 0.530210 4.2:+20613395 None:intergenic
ATTGGCACATCACTCTTTGG+AGG 0.535259 4.2:+20613081 None:intergenic
GCACCAAATGTGTAACCAAT+GGG 0.537151 4.2:+20612465 None:intergenic
AGTAGAAGCAAAGCTATGGC+AGG 0.545320 4.2:-20613385 MS.gene40165:intron
AGCAACAAACCATCAGCCTC+AGG 0.546743 4.2:+20613039 None:intergenic
CACGAGACAGCCTACCGAGT+TGG 0.547705 4.2:-20612373 MS.gene40165:CDS
AAAGGGGCGGCCTCCGTGGA+AGG 0.550707 4.2:-20613408 MS.gene40165:CDS
TGGATGCAACTGGTGGCCTA+TGG 0.551588 4.2:-20612966 MS.gene40165:CDS
GCACTTGCAGGAAAGCCTGC+AGG 0.551589 4.2:-20612934 MS.gene40165:CDS
GTGCTGTAAAAGATTCCTGC+AGG 0.556948 4.2:+20612919 None:intergenic
ATCACTCAGCTTGCTCACCA+TGG 0.564969 4.2:-20612501 MS.gene40165:CDS
ATAGGCCACCAGTTGCATCC+AGG 0.570687 4.2:+20612968 None:intergenic
AGCACCAAATGTGTAACCAA+TGG 0.574155 4.2:+20612464 None:intergenic
TGGTGCTGGTATGTTTGAGA+TGG 0.575960 4.2:-20612448 MS.gene40165:CDS
AAGGAGTAGAAGCAAAGCTA+TGG 0.577868 4.2:-20613389 MS.gene40165:CDS
TGGTGGCCTATGGCGTACTC+AGG 0.578013 4.2:-20612956 MS.gene40165:CDS
CAGCAAAGTACTTCCCCTGA+TGG 0.579078 4.2:+20612334 None:intergenic
TTTAAAAGGGGCGGCCTCCG+TGG 0.580700 4.2:-20613412 MS.gene40165:CDS
TGGCTCAAGCTTTCCATCAG+GGG 0.583615 4.2:-20612347 MS.gene40165:CDS
TTGGCTCAAGCTTTCCATCA+GGG 0.591341 4.2:-20612348 MS.gene40165:CDS
GGCATTGCAAAGAAGCTCAA+AGG 0.592964 4.2:-20612312 MS.gene40165:CDS
CAAGTGCCTGAGTACGCCAT+AGG 0.599625 4.2:+20612950 None:intergenic
ATGGTGAGCAAGCTGAGTGA+TGG 0.600815 4.2:+20612503 None:intergenic
TACAGCACTGGTTCTCAAGG+AGG 0.602179 4.2:-20612904 MS.gene40165:CDS
GAGGTCGTTGGGAAGATGGG+AGG 0.615091 4.2:-20613105 MS.gene40165:CDS
ACCTGAAACTCTGCCTGCGG+AGG 0.615512 4.2:-20613124 MS.gene40165:CDS
GAAGGTTCCCGAACCATATG+GGG 0.617327 4.2:+20612407 None:intergenic
AGCACTGGTTCTCAAGGAGG+AGG 0.618456 4.2:-20612901 MS.gene40165:CDS
TGAGCCAATTCCAACTCGGT+AGG 0.619105 4.2:+20612363 None:intergenic
GATGCGCTACCTGAGGCTGA+TGG 0.631007 4.2:-20613048 MS.gene40165:CDS
AGCTTGAGCCAATTCCAACT+CGG 0.640803 4.2:+20612359 None:intergenic
GCATTCCTGGATGCAACTGG+TGG 0.654481 4.2:-20612973 MS.gene40165:CDS
TACACCTGATGCGCTACCTG+AGG 0.657213 4.2:-20613055 MS.gene40165:CDS
TGCTTCTACTCCTTCCACGG+AGG 0.674111 4.2:+20613398 None:intergenic
GGTACCTGAAACTCTGCCTG+CGG 0.684253 4.2:-20613127 MS.gene40165:CDS
GAGATGGAGAGCATAAAGGG+TGG 0.732219 4.2:-20612432 MS.gene40165:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAACAGTTTAAATT+TGG + chr4.2:20613082-20613101 None:intergenic 10.0%
!!! TTATTTTGAACATTTTAATT+TGG + chr4.2:20612490-20612509 None:intergenic 10.0%
!!! TTTTTCTTTAATTAAGAAAT+GGG + chr4.2:20612926-20612945 None:intergenic 10.0%
!! ACTGTTTATATATAAGTTAT+AGG - chr4.2:20613089-20613108 MS.gene40165:CDS 15.0%
!! CATTTCTTAATTAAAGAAAA+AGG - chr4.2:20612925-20612944 MS.gene40165:CDS 15.0%
!! TAAAATAAGTTAATCCAAAT+AGG - chr4.2:20613181-20613200 MS.gene40165:intron 15.0%
!!! CTTTTTCTTTAATTAAGAAA+TGG + chr4.2:20612927-20612946 None:intergenic 15.0%
! AATTATCATCTGATACGTAT+AGG - chr4.2:20612601-20612620 MS.gene40165:intron 25.0%
! ACCATCTTAAAGATATCTAA+TGG + chr4.2:20612513-20612532 None:intergenic 25.0%
! AGCAAACAAGCTTAAATATT+TGG - chr4.2:20612971-20612990 MS.gene40165:CDS 25.0%
! TCAATCAATCTTTACATGTT+TGG - chr4.2:20612454-20612473 MS.gene40165:CDS 25.0%
! TGAAATCAGAAAATCAATCA+GGG + chr4.2:20613207-20613226 None:intergenic 25.0%
! TTGAAATCAGAAAATCAATC+AGG + chr4.2:20613208-20613227 None:intergenic 25.0%
!! ACCATTAGATATCTTTAAGA+TGG - chr4.2:20612509-20612528 MS.gene40165:CDS 25.0%
!! GATGATAATTTTGTAAATGC+AGG + chr4.2:20612591-20612610 None:intergenic 25.0%
!!! TAGCTCAAGAGATTTTAAAA+GGG - chr4.2:20612324-20612343 MS.gene40165:CDS 25.0%
AAACAAAACTGAGTGAGATT+CGG + chr4.2:20612897-20612916 None:intergenic 30.0%
TTCTGATTTCAAAATTCTGC+AGG - chr4.2:20613216-20613235 MS.gene40165:intron 30.0%
! ACATACCACATTTTCTCTTT+AGG - chr4.2:20612412-20612431 MS.gene40165:CDS 30.0%
! CATACCACATTTTCTCTTTA+GGG - chr4.2:20612413-20612432 MS.gene40165:CDS 30.0%
! CTAGCTCAAGAGATTTTAAA+AGG - chr4.2:20612323-20612342 MS.gene40165:CDS 30.0%
! TTGGTAGTAATAAGTCTTTC+TGG - chr4.2:20612387-20612406 MS.gene40165:CDS 30.0%
!! AGCTCAAGAGATTTTAAAAG+GGG - chr4.2:20612325-20612344 MS.gene40165:CDS 30.0%
AAAATCAATCAGGGCCTATT+TGG + chr4.2:20613198-20613217 None:intergenic 35.0%
AACAAAACTGAGTGAGATTC+GGG + chr4.2:20612896-20612915 None:intergenic 35.0%
AGTTCCCTAAAGAGAAAATG+TGG + chr4.2:20612420-20612439 None:intergenic 35.0%
ATAATTGGCACATCACTCTT+TGG + chr4.2:20612674-20612693 None:intergenic 35.0%
! TGCAATCATTCGAAAAGCAT+TGG - chr4.2:20612554-20612573 MS.gene40165:intron 35.0%
! TTTGAGATGGAGAGCATAAA+GGG - chr4.2:20613314-20613333 MS.gene40165:intron 35.0%
!! GCAATCATTCGAAAAGCATT+GGG - chr4.2:20612555-20612574 MS.gene40165:intron 35.0%
!! TCAAGAGATTTTAAAAGGGG+CGG - chr4.2:20612328-20612347 MS.gene40165:CDS 35.0%
AAGGAGTAGAAGCAAAGCTA+TGG - chr4.2:20612360-20612379 MS.gene40165:CDS 40.0%
AGCACCAAATGTGTAACCAA+TGG + chr4.2:20613288-20613307 None:intergenic 40.0%
AGCGCATCAGGTGTAATAAT+TGG + chr4.2:20612689-20612708 None:intergenic 40.0%
CCATCATTCCAAATCTTGTC+GGG + chr4.2:20612742-20612761 None:intergenic 40.0%
GCACCAAATGTGTAACCAAT+GGG + chr4.2:20613287-20613306 None:intergenic 40.0%
GCCATCATTCCAAATCTTGT+CGG + chr4.2:20612743-20612762 None:intergenic 40.0%
TGGGCACAAAAATCATTCCA+TGG + chr4.2:20613268-20613287 None:intergenic 40.0%
TTTCGAATGATTGCAGAGGA+GGG + chr4.2:20612549-20612568 None:intergenic 40.0%
! GGAATGATTTTTGTGCCCAT+TGG - chr4.2:20613269-20613288 MS.gene40165:intron 40.0%
! GTTTGAGATGGAGAGCATAA+AGG - chr4.2:20613313-20613332 MS.gene40165:intron 40.0%
! TGCTCAGTTTAAAGCATTCC+TGG - chr4.2:20612763-20612782 MS.gene40165:intron 40.0%
! TGCTTTTCGAATGATTGCAG+AGG + chr4.2:20612553-20612572 None:intergenic 40.0%
! TTTTCGAATGATTGCAGAGG+AGG + chr4.2:20612550-20612569 None:intergenic 40.0%
!! ATTGGTTACACATTTGGTGC+TGG - chr4.2:20613287-20613306 MS.gene40165:intron 40.0%
!!! CTCACTCAGTTTTGTTTCGA+AGG - chr4.2:20612900-20612919 MS.gene40165:CDS 40.0%
!!! TTTTACAGCACTGGTTCTCA+AGG - chr4.2:20612842-20612861 MS.gene40165:intron 40.0%
AGCTTGAGCCAATTCCAACT+CGG + chr4.2:20613393-20613412 None:intergenic 45.0%
AGTAGAAGCAAAGCTATGGC+AGG - chr4.2:20612364-20612383 MS.gene40165:CDS 45.0%
ATAAAGGGTGGTTCCCCATA+TGG - chr4.2:20613329-20613348 MS.gene40165:intron 45.0%
ATTGGCACATCACTCTTTGG+AGG + chr4.2:20612671-20612690 None:intergenic 45.0%
CTTTGCTTCTACTCCTTCCA+CGG + chr4.2:20612357-20612376 None:intergenic 45.0%
GAGTGAGATTCGGGAACTTA+CGG + chr4.2:20612887-20612906 None:intergenic 45.0%
GGCATTGCAAAGAAGCTCAA+AGG - chr4.2:20613437-20613456 MS.gene40165:CDS 45.0%
GTGCTGTAAAAGATTCCTGC+AGG + chr4.2:20612833-20612852 None:intergenic 45.0%
TTGGCTCAAGCTTTCCATCA+GGG - chr4.2:20613401-20613420 MS.gene40165:CDS 45.0%
! AAAGCATTCCTGGATGCAAC+TGG - chr4.2:20612773-20612792 MS.gene40165:intron 45.0%
! ATTGGCTCAAGCTTTCCATC+AGG - chr4.2:20613400-20613419 MS.gene40165:CDS 45.0%
! CCCGACAAGATTTGGAATGA+TGG - chr4.2:20612739-20612758 MS.gene40165:intron 45.0%
! GCAGGAATCTTTTACAGCAC+TGG - chr4.2:20612833-20612852 MS.gene40165:intron 45.0%
! GTGCCCATTGGTTACACATT+TGG - chr4.2:20613281-20613300 MS.gene40165:intron 45.0%
! TTGCAGAGGAGGGTATAACT+TGG + chr4.2:20612539-20612558 None:intergenic 45.0%
!! TGGTGCTGGTATGTTTGAGA+TGG - chr4.2:20613301-20613320 MS.gene40165:intron 45.0%
!!! ACTTATTTTAATTTATATAT+TGG + chr4.2:20613171-20613190 None:intergenic 5.0%
AGCAACAAACCATCAGCCTC+AGG + chr4.2:20612713-20612732 None:intergenic 50.0%
ATGGTGAGCAAGCTGAGTGA+TGG + chr4.2:20613249-20613268 None:intergenic 50.0%
CGAAGGTTCCCGAACCATAT+GGG + chr4.2:20613346-20613365 None:intergenic 50.0%
CTTGGCTTCCCGACAAGATT+TGG - chr4.2:20612731-20612750 MS.gene40165:intron 50.0%
GAAGCAAAGCTATGGCAGGT+TGG - chr4.2:20612368-20612387 MS.gene40165:CDS 50.0%
GAAGGTTCCCGAACCATATG+GGG + chr4.2:20613345-20613364 None:intergenic 50.0%
TGAGCCAATTCCAACTCGGT+AGG + chr4.2:20613389-20613408 None:intergenic 50.0%
TGGCTCAAGCTTTCCATCAG+GGG - chr4.2:20613402-20613421 MS.gene40165:CDS 50.0%
! ACAGCCTACCGAGTTGGAAT+TGG - chr4.2:20613382-20613401 MS.gene40165:intron 50.0%
! ATCACTCAGCTTGCTCACCA+TGG - chr4.2:20613248-20613267 MS.gene40165:intron 50.0%
! CAGCAAAGTACTTCCCCTGA+TGG + chr4.2:20613418-20613437 None:intergenic 50.0%
! GAGATGGAGAGCATAAAGGG+TGG - chr4.2:20613317-20613336 MS.gene40165:intron 50.0%
!! CATCAGGGGAAGTACTTTGC+TGG - chr4.2:20613416-20613435 MS.gene40165:CDS 50.0%
!! GAGGCTGATGGTTTGTTGCT+TGG - chr4.2:20612713-20612732 MS.gene40165:intron 50.0%
!! TACAGCACTGGTTCTCAAGG+AGG - chr4.2:20612845-20612864 MS.gene40165:intron 50.0%
ATAGGCCACCAGTTGCATCC+AGG + chr4.2:20612784-20612803 None:intergenic 55.0%
CAAGTGCCTGAGTACGCCAT+AGG + chr4.2:20612802-20612821 None:intergenic 55.0%
GCATTCCTGGATGCAACTGG+TGG - chr4.2:20612776-20612795 MS.gene40165:intron 55.0%
GCGAAGGTTCCCGAACCATA+TGG + chr4.2:20613347-20613366 None:intergenic 55.0%
GGGTGGTTCCCCATATGGTT+CGG - chr4.2:20613334-20613353 MS.gene40165:intron 55.0%
GGTACCTGAAACTCTGCCTG+CGG - chr4.2:20612622-20612641 MS.gene40165:intron 55.0%
GGTGGTTCCCCATATGGTTC+GGG - chr4.2:20613335-20613354 MS.gene40165:intron 55.0%
TACACCTGATGCGCTACCTG+AGG - chr4.2:20612694-20612713 MS.gene40165:intron 55.0%
TGCTTCTACTCCTTCCACGG+AGG + chr4.2:20612354-20612373 None:intergenic 55.0%
TGGATGCAACTGGTGGCCTA+TGG - chr4.2:20612783-20612802 MS.gene40165:intron 55.0%
! TATGGTTCGGGAACCTTCGC+CGG - chr4.2:20613347-20613366 MS.gene40165:intron 55.0%
!! AGCACTGGTTCTCAAGGAGG+AGG - chr4.2:20612848-20612867 MS.gene40165:intron 55.0%
ACCTCCGCAGGCAGAGTTTC+AGG + chr4.2:20612629-20612648 None:intergenic 60.0%
ACCTGAAACTCTGCCTGCGG+AGG - chr4.2:20612625-20612644 MS.gene40165:intron 60.0%
ATCTTCCCAACGACCTCCGC+AGG + chr4.2:20612641-20612660 None:intergenic 60.0%
CACGAGACAGCCTACCGAGT+TGG - chr4.2:20613376-20613395 MS.gene40165:intron 60.0%
GAGGTCGTTGGGAAGATGGG+AGG - chr4.2:20612644-20612663 MS.gene40165:intron 60.0%
GATGCGCTACCTGAGGCTGA+TGG - chr4.2:20612701-20612720 MS.gene40165:intron 60.0%
GCACTTGCAGGAAAGCCTGC+AGG - chr4.2:20612815-20612834 MS.gene40165:intron 60.0%
GCGGAGGTCGTTGGGAAGAT+GGG - chr4.2:20612641-20612660 MS.gene40165:intron 60.0%
TCAGCCTCAGGTAGCGCATC+AGG + chr4.2:20612701-20612720 None:intergenic 60.0%
TGCGGAGGTCGTTGGGAAGA+TGG - chr4.2:20612640-20612659 MS.gene40165:intron 60.0%
TGGCGTACTCAGGCACTTGC+AGG - chr4.2:20612803-20612822 MS.gene40165:intron 60.0%
TGGTGGCCTATGGCGTACTC+AGG - chr4.2:20612793-20612812 MS.gene40165:intron 60.0%
TTTAAAAGGGGCGGCCTCCG+TGG - chr4.2:20612337-20612356 MS.gene40165:CDS 60.0%
ACTCTGCCTGCGGAGGTCGT+TGG - chr4.2:20612632-20612651 MS.gene40165:intron 65.0%
AGGCTGTCTCGTGCCGTCTC+CGG + chr4.2:20613369-20613388 None:intergenic 65.0%
CTCTGCCTGCGGAGGTCGTT+GGG - chr4.2:20612633-20612652 MS.gene40165:intron 65.0%
TCGGGAACCTTCGCCGGAGA+CGG - chr4.2:20613353-20613372 MS.gene40165:intron 65.0%
AAAGGGGCGGCCTCCGTGGA+AGG - chr4.2:20612341-20612360 MS.gene40165:CDS 70.0%
TCTCGTGCCGTCTCCGGCGA+AGG + chr4.2:20613363-20613382 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 20612302 20613469 20612302 ID=MS.gene40165
chr4.2 mRNA 20612302 20613469 20612302 ID=MS.gene40165.t1;Parent=MS.gene40165
chr4.2 exon 20613386 20613469 20613386 ID=MS.gene40165.t1.exon1;Parent=MS.gene40165.t1
chr4.2 CDS 20613386 20613469 20613386 ID=cds.MS.gene40165.t1;Parent=MS.gene40165.t1
chr4.2 exon 20612886 20613148 20612886 ID=MS.gene40165.t1.exon2;Parent=MS.gene40165.t1
chr4.2 CDS 20612886 20613148 20612886 ID=cds.MS.gene40165.t1;Parent=MS.gene40165.t1
chr4.2 exon 20612302 20612533 20612302 ID=MS.gene40165.t1.exon3;Parent=MS.gene40165.t1
chr4.2 CDS 20612302 20612533 20612302 ID=cds.MS.gene40165.t1;Parent=MS.gene40165.t1
Gene Sequence

>MS.gene40165

ATGTACGGACATGTTGAGAAGCTAGCTCAAGAGATTTTAAAAGGGGCGGCCTCCGTGGAAGGAGTAGAAGCAAAGCTATGGCAGGTTGGTAGTAATAAGTCTTTCTGGTTACATACCACATTTTCTCTTTAGGGAACTTGTTCTAAGTTTTTTCAATCAATCTTTACATGTTTGGCTTTAAGTCACCAAATTAAAATGTTCAAAATAACCATTAGATATCTTTAAGATGGTTAACCAAGTTATACCCTCCTCTGCAATCATTCGAAAAGCATTGGGAAATTTTTATCCTGCATTTACAAAATTATCATCTGATACGTATAGGTACCTGAAACTCTGCCTGCGGAGGTCGTTGGGAAGATGGGAGGACCTCCAAAGAGTGATGTGCCAATTATTACACCTGATGCGCTACCTGAGGCTGATGGTTTGTTGCTTGGCTTCCCGACAAGATTTGGAATGATGGCTGCTCAGTTTAAAGCATTCCTGGATGCAACTGGTGGCCTATGGCGTACTCAGGCACTTGCAGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGAGGACAAGAGACTACACCGTAAGTTCCCGAATCTCACTCAGTTTTGTTTCGAAGGCCCATTTCTTAATTAAAGAAAAAGGCAATTTTCTTTAATAAAAGCTCAAGCAAACAAGCTTAAATATTTGGATAAACAACTTAATTAAGCGCTTATAGCATAAACACTTATCATATAAGTGTTTGTGTATAAATCATTTCTTTACAAAAAGATAAACCAAATTTAAACTGTTTATATATAAGTTATAGGTTACTTTCATAAGCTATTTCTGTAATCTCTCTCAAACAGTCTCACAATTGCTTATACCAATATATAAATTAAAATAAGTTAATCCAAATAGGCCCTGATTGATTTTCTGATTTCAAAATTCTGCAGGTTGACATCCATCACTCAGCTTGCTCACCATGGAATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGTATGTTTGAGATGGAGAGCATAAAGGGTGGTTCCCCATATGGTTCGGGAACCTTCGCCGGAGACGGCACGAGACAGCCTACCGAGTTGGAATTGGCTCAAGCTTTCCATCAGGGGAAGTACTTTGCTGGCATTGCAAAGAAGCTCAAAGGATCTCAGTGA
Protein sequence

>MS.gene40165.t1

MYGHVEKLAQEILKGAASVEGVEAKLWQVPETLPAEVVGKMGGPPKSDVPIITPDALPEADGLLLGFPTRFGMMAAQFKAFLDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLAHHGMIFVPIGYTFGAGMFEMESIKGGSPYGSGTFAGDGTRQPTELELAQAFHQGKYFAGIAKKLKGSQ