Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010630.t1 | XP_003612185.1 | 98.9 | 361 | 4 | 0 | 1 | 361 | 1 | 361 | 7.50E-204 | 719.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010630.t1 | P10933 | 93.4 | 362 | 21 | 2 | 1 | 361 | 1 | 360 | 7.2e-195 | 681.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010630.t1 | G7JW95 | 98.9 | 361 | 4 | 0 | 1 | 361 | 1 | 361 | 5.4e-204 | 719.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010630 | MS.gene40165 | PPI |
| MS.gene010630 | MS.gene41828 | PPI |
| MS.gene010630 | MS.gene028582 | PPI |
| MS.gene010630 | MS.gene042521 | PPI |
| MS.gene010630 | MS.gene28697 | PPI |
| MS.gene010630 | MS.gene013866 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010630.t1 | MTR_5g022300 | 98.892 | 361 | 4 | 0 | 1 | 361 | 1 | 361 | 0.0 | 739 |
| MS.gene010630.t1 | MTR_5g022300 | 99.583 | 240 | 1 | 0 | 1 | 240 | 1 | 240 | 2.06e-178 | 495 |
| MS.gene010630.t1 | MTR_2g030200 | 44.241 | 382 | 182 | 7 | 3 | 361 | 5 | 378 | 9.22e-100 | 300 |
| MS.gene010630.t1 | MTR_3g100160 | 30.357 | 224 | 136 | 12 | 140 | 354 | 470 | 682 | 2.46e-15 | 77.8 |
| MS.gene010630.t1 | MTR_4g128020 | 28.230 | 209 | 131 | 11 | 140 | 340 | 479 | 676 | 3.07e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010630.t1 | AT5G66190 | 82.967 | 364 | 55 | 3 | 1 | 361 | 1 | 360 | 0.0 | 590 |
| MS.gene010630.t1 | AT1G20020 | 75.881 | 369 | 81 | 3 | 1 | 361 | 1 | 369 | 0.0 | 589 |
| MS.gene010630.t1 | AT1G20020 | 75.610 | 369 | 82 | 3 | 1 | 361 | 1 | 369 | 0.0 | 587 |
| MS.gene010630.t1 | AT1G20020 | 87.059 | 255 | 33 | 0 | 107 | 361 | 1 | 255 | 5.90e-174 | 484 |
| MS.gene010630.t1 | AT5G66190 | 89.370 | 254 | 27 | 0 | 108 | 361 | 9 | 262 | 2.29e-166 | 465 |
| MS.gene010630.t1 | AT4G05390 | 46.505 | 329 | 168 | 4 | 40 | 361 | 51 | 378 | 6.13e-100 | 301 |
| MS.gene010630.t1 | AT4G05390 | 50.853 | 293 | 136 | 4 | 76 | 361 | 59 | 350 | 9.89e-100 | 299 |
| MS.gene010630.t1 | AT1G30510 | 43.832 | 381 | 190 | 7 | 2 | 361 | 5 | 382 | 1.17e-99 | 300 |
| MS.gene010630.t1 | AT1G30510 | 43.583 | 374 | 196 | 5 | 2 | 361 | 9 | 381 | 1.41e-99 | 300 |
| MS.gene010630.t1 | AT1G30510 | 48.101 | 316 | 156 | 4 | 53 | 361 | 3 | 317 | 3.44e-99 | 296 |
| MS.gene010630.t1 | AT4G24520 | 28.571 | 224 | 140 | 12 | 140 | 354 | 470 | 682 | 7.11e-15 | 76.3 |
| MS.gene010630.t1 | AT4G24520 | 28.571 | 224 | 140 | 12 | 140 | 354 | 466 | 678 | 7.28e-15 | 76.3 |
Find 85 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGTGCTCTTGGTGATTT+TGG | 0.159118 | 5.1:+13335976 | MS.gene010630:CDS |
| TGGTTTGGCATGGCTCTTCT+TGG | 0.262373 | 5.1:+13337250 | MS.gene010630:CDS |
| TTGAATAATGTTTCCATTAG+TGG | 0.264637 | 5.1:+13335130 | MS.gene010630:CDS |
| CTTCCAATGTATGGTGTCTT+TGG | 0.276021 | 5.1:-13335259 | None:intergenic |
| TTCTGCGTATTGTGCCATTC+TGG | 0.290367 | 5.1:-13337512 | None:intergenic |
| AGAGAAGTGGAGTTGGAGTA+TGG | 0.297934 | 5.1:-13334853 | None:intergenic |
| TTAATAAAGACTCACAGTTT+TGG | 0.301523 | 5.1:-13336004 | None:intergenic |
| GACTGTTAACCTTCCACTAA+TGG | 0.338400 | 5.1:-13335143 | None:intergenic |
| CTGCAGTTGGGAACTGGTAC+TGG | 0.341094 | 5.1:+13336881 | MS.gene010630:intron |
| AAGCAGCTCACTGCTTTATA+AGG | 0.342576 | 5.1:+13337283 | MS.gene010630:CDS |
| AGAAAGCACCTGAGAACTTC+AGG | 0.359267 | 5.1:+13337428 | MS.gene010630:CDS |
| TATTCAGGCGACTTGAAGCC+TGG | 0.381421 | 5.1:+13336671 | MS.gene010630:intron |
| ATATTTGTAGTTCAATGGTT+TGG | 0.384817 | 5.1:+13337235 | MS.gene010630:intron |
| AGAAAAGATATCAAAGAAAC+AGG | 0.385941 | 5.1:+13335207 | MS.gene010630:CDS |
| AGATAGACTTGTCTTCAAAA+AGG | 0.389421 | 5.1:+13334903 | MS.gene010630:CDS |
| GGATCTGAAGTACAGATTAC+TGG | 0.391458 | 5.1:+13336692 | MS.gene010630:CDS |
| TACAGAGAAGGACAATCAAT+TGG | 0.392978 | 5.1:+13335889 | MS.gene010630:CDS |
| CGTATTGTGCCATTCTGGTT+TGG | 0.393872 | 5.1:-13337507 | None:intergenic |
| ACGGTGGCATTAGGATCTTT+TGG | 0.394188 | 5.1:-13336740 | None:intergenic |
| CCATTCTTGTCAATACCATC+TGG | 0.394699 | 5.1:-13335919 | None:intergenic |
| ATAAGCATTTCTTTACCAAC+TGG | 0.399545 | 5.1:-13336716 | None:intergenic |
| GGTTTGGCATGGCTCTTCTT+GGG | 0.411064 | 5.1:+13337251 | MS.gene010630:CDS |
| GAAGGGAATTGATGACATAA+TGG | 0.416372 | 5.1:+13337600 | MS.gene010630:CDS |
| ATATGATATTTGTAGTTCAA+TGG | 0.421657 | 5.1:+13337230 | MS.gene010630:intron |
| TATGTGTTGTAGGTATTGAT+TGG | 0.421809 | 5.1:+13337831 | MS.gene010630:intron |
| ATTGATTGTCCTTCTCTGTA+AGG | 0.428154 | 5.1:-13335886 | None:intergenic |
| AGAAGCACCTGCTCCTGTTA+AGG | 0.442455 | 5.1:+13335183 | MS.gene010630:CDS |
| TGATGCCGGAGAAGTTGTTA+AGG | 0.448771 | 5.1:+13336323 | MS.gene010630:CDS |
| ACCATGATGACGGTGGCATT+AGG | 0.466209 | 5.1:-13336749 | None:intergenic |
| CTTCAACTGTCTCTTGTACT+CGG | 0.468568 | 5.1:-13337855 | None:intergenic |
| TAAAGCAGTGAGCTGCTTGT+GGG | 0.469081 | 5.1:-13337278 | None:intergenic |
| CGAGAAGCATGAAGATTACA+AGG | 0.497025 | 5.1:+13336943 | MS.gene010630:CDS |
| AGAAGACACCTTCCAATGTA+TGG | 0.498391 | 5.1:-13335268 | None:intergenic |
| CACAATACGCAGAAGAGTTG+TGG | 0.498754 | 5.1:+13337521 | MS.gene010630:CDS |
| AAGTCAAGCCTGAAGTTCTC+AGG | 0.498853 | 5.1:-13337436 | None:intergenic |
| ACTCCACTTCTCTTCCGATC+AGG | 0.500775 | 5.1:+13334863 | MS.gene010630:CDS |
| TCAATTGCTAGCAGTGCTCT+TGG | 0.502382 | 5.1:+13335967 | MS.gene010630:CDS |
| TGTAGTTCAATGGTTTGGCA+TGG | 0.502735 | 5.1:+13337240 | MS.gene010630:intron |
| GTTTCACTCGCTGCCAAAGA+AGG | 0.504760 | 5.1:+13337622 | MS.gene010630:CDS |
| ACAATACGCAGAAGAGTTGT+GGG | 0.513315 | 5.1:+13337522 | MS.gene010630:CDS |
| ACAGGAATTTGAAAAGATGA+AGG | 0.521111 | 5.1:+13337405 | MS.gene010630:intron |
| ATGATGCACCTGGTGAAACT+TGG | 0.522730 | 5.1:+13335311 | MS.gene010630:CDS |
| AGTGGAGTTGGAGTATGGAA+AGG | 0.528772 | 5.1:-13334848 | None:intergenic |
| ACAGAGAAGGACAATCAATT+GGG | 0.529867 | 5.1:+13335890 | MS.gene010630:CDS |
| GTAATCTGTACTTCAGATCC+AGG | 0.530710 | 5.1:-13336689 | None:intergenic |
| CCAGATGGTATTGACAAGAA+TGG | 0.533775 | 5.1:+13335919 | MS.gene010630:CDS |
| TCCTAATGCCACCGTCATCA+TGG | 0.538982 | 5.1:+13336748 | MS.gene010630:CDS |
| GATGCCGGAGAAGTTGTTAA+GGG | 0.540363 | 5.1:+13336324 | MS.gene010630:CDS |
| GACTCCCTTAACAACTTCTC+CGG | 0.542086 | 5.1:-13336328 | None:intergenic |
| GATCGGAAGAGAAGTGGAGT+TGG | 0.545018 | 5.1:-13334860 | None:intergenic |
| TTCACCAGGTGCATCATCAC+CGG | 0.556250 | 5.1:-13335305 | None:intergenic |
| AGTTGAAGAAGGCAGAGCAA+TGG | 0.557197 | 5.1:+13337870 | MS.gene010630:CDS |
| GGAGAGGTTCCTTACAGAGA+AGG | 0.558827 | 5.1:+13335877 | MS.gene010630:intron |
| TGTCCTGATCGGAAGAGAAG+TGG | 0.571586 | 5.1:-13334866 | None:intergenic |
| ATAAAGCAGTGAGCTGCTTG+TGG | 0.572307 | 5.1:-13337279 | None:intergenic |
| GTACAAGAGACAGTTGAAGA+AGG | 0.576995 | 5.1:+13337859 | MS.gene010630:CDS |
| AATGTACATCCAAACCAGAA+TGG | 0.582961 | 5.1:+13337498 | MS.gene010630:CDS |
| TAAGCATTTCTTTACCAACT+GGG | 0.583707 | 5.1:-13336715 | None:intergenic |
| GGACTGAAAGGAATGGAGAA+GGG | 0.584337 | 5.1:+13337583 | MS.gene010630:CDS |
| ATAATGTTTCCATTAGTGGA+AGG | 0.586548 | 5.1:+13335134 | MS.gene010630:CDS |
| CAAAGACACCATACATTGGA+AGG | 0.589657 | 5.1:+13335260 | MS.gene010630:CDS |
| AGGTGCTTCTGTAGCAACTT+CGG | 0.589953 | 5.1:-13335170 | None:intergenic |
| TGGACTGAAAGGAATGGAGA+AGG | 0.593496 | 5.1:+13337582 | MS.gene010630:CDS |
| AAACCAAAGACACCATACAT+TGG | 0.596092 | 5.1:+13335256 | MS.gene010630:CDS |
| GTACAGATTACTGGCCCAGT+TGG | 0.601436 | 5.1:+13336701 | MS.gene010630:CDS |
| TTTGAAGACAAGTCTATCTG+GGG | 0.606529 | 5.1:-13334899 | None:intergenic |
| CAGCTCACTGCTTTATAAGG+AGG | 0.608066 | 5.1:+13337286 | MS.gene010630:CDS |
| GTTTACATGTGTGGACTGAA+AGG | 0.611115 | 5.1:+13337571 | MS.gene010630:CDS |
| ACCATGTGCCAAGTTTCACC+AGG | 0.614512 | 5.1:-13335319 | None:intergenic |
| CTTGTGTACACAAATGATGC+CGG | 0.615312 | 5.1:+13336309 | MS.gene010630:CDS |
| AAAGCAGTGAGCTGCTTGTG+GGG | 0.619800 | 5.1:-13337277 | None:intergenic |
| GAATACAATCTCAGCTTGTG+AGG | 0.622294 | 5.1:-13335946 | None:intergenic |
| AGAGAACAAGTAAACGACAA+AGG | 0.624485 | 5.1:+13337469 | MS.gene010630:CDS |
| GAAATAACAGATGTCCTGAT+CGG | 0.627473 | 5.1:-13334877 | None:intergenic |
| CTTCTCAACACAAAGATCAC+CGG | 0.628852 | 5.1:+13335286 | MS.gene010630:CDS |
| ATATCAAAGAAACAGGAGGA+AGG | 0.640788 | 5.1:+13335214 | MS.gene010630:CDS |
| GTTGGAGTATGGAAAGGAGA+CGG | 0.641171 | 5.1:-13334842 | None:intergenic |
| AAAGATATCAAAGAAACAGG+AGG | 0.651290 | 5.1:+13335210 | MS.gene010630:CDS |
| ACCTGGTGAAACTTGGCACA+TGG | 0.659148 | 5.1:+13335318 | MS.gene010630:CDS |
| TCAATTGGGATAGTTCCAGA+TGG | 0.670503 | 5.1:+13335904 | MS.gene010630:CDS |
| CATGTGTGGACTGAAAGGAA+TGG | 0.694748 | 5.1:+13337576 | MS.gene010630:CDS |
| TAAGTAATGTACCATGATGA+CGG | 0.701831 | 5.1:-13336759 | None:intergenic |
| ATCACCGGTGATGATGCACC+TGG | 0.734264 | 5.1:+13335301 | MS.gene010630:CDS |
| GGAGTATGGAAAGGAGACGG+CGG | 0.734819 | 5.1:-13334839 | None:intergenic |
| GTAATGTACCATGATGACGG+TGG | 0.793247 | 5.1:-13336756 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTGTATTATAATTTC+AGG | + | chr5.1:13335856-13335875 | MS.gene010630:intron | 10.0% |
| !! | GAAATTATAATACAAATATT+AGG | - | chr5.1:13335856-13335875 | None:intergenic | 10.0% |
| !!! | TTTATAGATCTTTTAAAGAA+TGG | + | chr5.1:13337075-13337094 | MS.gene010630:intron | 15.0% |
| !! | ATATGATATTTGTAGTTCAA+TGG | + | chr5.1:13337230-13337249 | MS.gene010630:intron | 20.0% |
| !! | ATGTAAAAGTAATAATAGAG+AGG | - | chr5.1:13335379-13335398 | None:intergenic | 20.0% |
| !! | ATTATTATGAGTATGATATG+AGG | + | chr5.1:13335084-13335103 | MS.gene010630:intron | 20.0% |
| !!! | CATTACAAGGTTTTAAATTA+CGG | + | chr5.1:13335407-13335426 | MS.gene010630:intron | 20.0% |
| !!! | TTATCATATACTTGTTTTGA+GGG | - | chr5.1:13336206-13336225 | None:intergenic | 20.0% |
| !!! | TTTGATTATTAACTGAGTTT+TGG | + | chr5.1:13337196-13337215 | MS.gene010630:intron | 20.0% |
| ! | AATAGAAATTCCGATTCTAA+AGG | + | chr5.1:13335449-13335468 | MS.gene010630:intron | 25.0% |
| ! | ACAATCTAGAAATCATAACA+TGG | + | chr5.1:13335791-13335810 | MS.gene010630:intron | 25.0% |
| ! | ACTGTGAGTCTTTATTAATT+TGG | + | chr5.1:13336009-13336028 | MS.gene010630:intron | 25.0% |
| ! | AGAAAAGATATCAAAGAAAC+AGG | + | chr5.1:13335207-13335226 | MS.gene010630:CDS | 25.0% |
| ! | ATATTTGTAGTTCAATGGTT+TGG | + | chr5.1:13337235-13337254 | MS.gene010630:intron | 25.0% |
| ! | ATTTCCCAAAATTTGTGTTA+GGG | + | chr5.1:13335738-13335757 | MS.gene010630:intron | 25.0% |
| ! | CTACTTTAATTGTATGATAC+AGG | + | chr5.1:13337387-13337406 | MS.gene010630:intron | 25.0% |
| ! | GTAGTTGCAATAAATTAAAG+TGG | - | chr5.1:13337040-13337059 | None:intergenic | 25.0% |
| ! | TACATTCACTATTCATTACA+AGG | + | chr5.1:13335394-13335413 | MS.gene010630:intron | 25.0% |
| ! | TAGTATTATGCATTGGATTA+GGG | + | chr5.1:13335559-13335578 | MS.gene010630:intron | 25.0% |
| ! | TCAATGCATGTATATGATTA+TGG | - | chr5.1:13334943-13334962 | None:intergenic | 25.0% |
| ! | TTGAATAATGTTTCCATTAG+TGG | + | chr5.1:13335130-13335149 | MS.gene010630:CDS | 25.0% |
| ! | TTGTATTATAATTTCAGGAG+AGG | + | chr5.1:13335861-13335880 | MS.gene010630:intron | 25.0% |
| ! | TTTATTACATGAAGCATAGA+GGG | + | chr5.1:13337665-13337684 | MS.gene010630:intron | 25.0% |
| !! | AAAAGTTCGAATTTTGTAAC+AGG | - | chr5.1:13336144-13336163 | None:intergenic | 25.0% |
| !! | AAAGTTCGAATTTTGTAACA+GGG | - | chr5.1:13336143-13336162 | None:intergenic | 25.0% |
| !! | AATGTTTTTCTTACCTTCTT+TGG | - | chr5.1:13337638-13337657 | None:intergenic | 25.0% |
| !! | ACATTTTCCATAAAAATGAG+CGG | - | chr5.1:13336919-13336938 | None:intergenic | 25.0% |
| !! | ATGTTATGATTTCTAGATTG+TGG | - | chr5.1:13335792-13335811 | None:intergenic | 25.0% |
| !! | GAAGTTTTTACAACTTATAC+TGG | - | chr5.1:13336598-13336617 | None:intergenic | 25.0% |
| !! | TTAAAATTTTCTCTGCAGTT+GGG | + | chr5.1:13336869-13336888 | MS.gene010630:intron | 25.0% |
| !! | TTAATAAAGACTCACAGTTT+TGG | - | chr5.1:13336007-13336026 | None:intergenic | 25.0% |
| !! | TTTTATTACATGAAGCATAG+AGG | + | chr5.1:13337664-13337683 | MS.gene010630:intron | 25.0% |
| !!! | AGATTGTGGTTTTAGAAAAA+TGG | - | chr5.1:13335778-13335797 | None:intergenic | 25.0% |
| !!! | CTTATCATATACTTGTTTTG+AGG | - | chr5.1:13336207-13336226 | None:intergenic | 25.0% |
| !!! | GAGAAAATTTTAAGGATCAA+CGG | - | chr5.1:13336862-13336881 | None:intergenic | 25.0% |
| AAAATTTGTGTTAGGGAATG+TGG | + | chr5.1:13335745-13335764 | MS.gene010630:intron | 30.0% | |
| AAAGATATCAAAGAAACAGG+AGG | + | chr5.1:13335210-13335229 | MS.gene010630:CDS | 30.0% | |
| AACACATAACAAACACAACA+TGG | - | chr5.1:13337819-13337838 | None:intergenic | 30.0% | |
| AACAGTCAAGACAAAAGAAA+GGG | - | chr5.1:13336831-13336850 | None:intergenic | 30.0% | |
| ACAGGAATTTGAAAAGATGA+AGG | + | chr5.1:13337405-13337424 | MS.gene010630:intron | 30.0% | |
| ACAGTGGTGATTAGTATAAA+GGG | - | chr5.1:13336642-13336661 | None:intergenic | 30.0% | |
| AGATAGACTTGTCTTCAAAA+AGG | + | chr5.1:13334903-13334922 | MS.gene010630:CDS | 30.0% | |
| ATAAGCATTTCTTTACCAAC+TGG | - | chr5.1:13336719-13336738 | None:intergenic | 30.0% | |
| ATAATGTTTCCATTAGTGGA+AGG | + | chr5.1:13335134-13335153 | MS.gene010630:CDS | 30.0% | |
| ATAGTAAAGTCTCCACATTA+GGG | - | chr5.1:13336495-13336514 | None:intergenic | 30.0% | |
| CATTTCCCAAAATTTGTGTT+AGG | + | chr5.1:13335737-13335756 | MS.gene010630:intron | 30.0% | |
| CTAGTATTATGCATTGGATT+AGG | + | chr5.1:13335558-13335577 | MS.gene010630:intron | 30.0% | |
| CTGATATGATTCCTTTATAC+AGG | + | chr5.1:13336266-13336285 | MS.gene010630:intron | 30.0% | |
| GCAATAAATTAAAGTGGCAA+CGG | - | chr5.1:13337034-13337053 | None:intergenic | 30.0% | |
| GTCAATGTTCTAATCAATTG+AGG | + | chr5.1:13336454-13336473 | MS.gene010630:intron | 30.0% | |
| TAAGCATTTCTTTACCAACT+GGG | - | chr5.1:13336718-13336737 | None:intergenic | 30.0% | |
| TAAGTAATGTACCATGATGA+CGG | - | chr5.1:13336762-13336781 | None:intergenic | 30.0% | |
| TACAAGGTAAGAGAAGAATT+TGG | + | chr5.1:13336959-13336978 | MS.gene010630:intron | 30.0% | |
| TATAGTAAAGTCTCCACATT+AGG | - | chr5.1:13336496-13336515 | None:intergenic | 30.0% | |
| TGAAATTCAAACCATGATGA+AGG | + | chr5.1:13337732-13337751 | MS.gene010630:intron | 30.0% | |
| TGCTACAAGTTATGTAGAAT+GGG | + | chr5.1:13337347-13337366 | MS.gene010630:intron | 30.0% | |
| TGCTGCTCTTAAATTCATTT+GGG | - | chr5.1:13336183-13336202 | None:intergenic | 30.0% | |
| TTATTACATGAAGCATAGAG+GGG | + | chr5.1:13337666-13337685 | MS.gene010630:intron | 30.0% | |
| ! | AAGAGAAGAATTTGGAACAA+AGG | + | chr5.1:13336967-13336986 | MS.gene010630:intron | 30.0% |
| ! | AAGGATGAATGCTTTTACTT+TGG | + | chr5.1:13336369-13336388 | MS.gene010630:intron | 30.0% |
| ! | AAGTTCGAATTTTGTAACAG+GGG | - | chr5.1:13336142-13336161 | None:intergenic | 30.0% |
| ! | ACATTCCCTAACACAAATTT+TGG | - | chr5.1:13335746-13335765 | None:intergenic | 30.0% |
| ! | CAACTGCAGAGAAAATTTTA+AGG | - | chr5.1:13336870-13336889 | None:intergenic | 30.0% |
| ! | CATTCCCTAACACAAATTTT+GGG | - | chr5.1:13335745-13335764 | None:intergenic | 30.0% |
| ! | CTTAAAATTTTCTCTGCAGT+TGG | + | chr5.1:13336868-13336887 | MS.gene010630:intron | 30.0% |
| ! | CTTTTCGATATAGATGAAGA+TGG | - | chr5.1:13336786-13336805 | None:intergenic | 30.0% |
| ! | GATATCTTTTCTACCTTAAC+AGG | - | chr5.1:13335199-13335218 | None:intergenic | 30.0% |
| ! | TAGTATTTTCTCCTTCATCA+TGG | - | chr5.1:13337746-13337765 | None:intergenic | 30.0% |
| !! | AACACTTTTGTTTACATGTG+TGG | + | chr5.1:13337562-13337581 | MS.gene010630:CDS | 30.0% |
| !! | CTAACACAAATTTTGGGAAA+TGG | - | chr5.1:13335739-13335758 | None:intergenic | 30.0% |
| !! | GGTTTTCTAGTATTATGCAT+TGG | + | chr5.1:13335552-13335571 | MS.gene010630:intron | 30.0% |
| !! | TATGTGTTGTAGGTATTGAT+TGG | + | chr5.1:13337831-13337850 | MS.gene010630:intron | 30.0% |
| !! | TTATCAGACTCCTTTAGAAT+CGG | - | chr5.1:13335462-13335481 | None:intergenic | 30.0% |
| !! | TTGTGTTTGTTATGTGTTGT+AGG | + | chr5.1:13337821-13337840 | MS.gene010630:intron | 30.0% |
| !! | TTTTGAAGACAAGTCTATCT+GGG | - | chr5.1:13334903-13334922 | None:intergenic | 30.0% |
| !! | TTTTTGAAGACAAGTCTATC+TGG | - | chr5.1:13334904-13334923 | None:intergenic | 30.0% |
| !!! | TTAACTGAGTTTTGGACTTT+TGG | + | chr5.1:13337204-13337223 | MS.gene010630:intron | 30.0% |
| AAACCAAAGACACCATACAT+TGG | + | chr5.1:13335256-13335275 | MS.gene010630:CDS | 35.0% | |
| AATGTACATCCAAACCAGAA+TGG | + | chr5.1:13337498-13337517 | MS.gene010630:CDS | 35.0% | |
| ACAGAGAAGGACAATCAATT+GGG | + | chr5.1:13335890-13335909 | MS.gene010630:CDS | 35.0% | |
| ACAGAGAGAAACCTGTATAA+AGG | - | chr5.1:13336280-13336299 | None:intergenic | 35.0% | |
| AGAGAACAAGTAAACGACAA+AGG | + | chr5.1:13337469-13337488 | MS.gene010630:CDS | 35.0% | |
| AGATGATGTAACTTCAATCG+CGG | + | chr5.1:13335712-13335731 | MS.gene010630:intron | 35.0% | |
| ATATCAAAGAAACAGGAGGA+AGG | + | chr5.1:13335214-13335233 | MS.gene010630:CDS | 35.0% | |
| ATTGATTGTCCTTCTCTGTA+AGG | - | chr5.1:13335889-13335908 | None:intergenic | 35.0% | |
| CAACAGTCAAGACAAAAGAA+AGG | - | chr5.1:13336832-13336851 | None:intergenic | 35.0% | |
| CACAGTGGTGATTAGTATAA+AGG | - | chr5.1:13336643-13336662 | None:intergenic | 35.0% | |
| CAGTGGTGATTAGTATAAAG+GGG | - | chr5.1:13336641-13336660 | None:intergenic | 35.0% | |
| CTGCTACAAGTTATGTAGAA+TGG | + | chr5.1:13337346-13337365 | MS.gene010630:intron | 35.0% | |
| CTGCTCTAATTTCTTGTGTA+AGG | + | chr5.1:13336350-13336369 | MS.gene010630:intron | 35.0% | |
| GAAATAACAGATGTCCTGAT+CGG | - | chr5.1:13334880-13334899 | None:intergenic | 35.0% | |
| TAAATTATCAGTGTCGTGTC+CGG | - | chr5.1:13334971-13334990 | None:intergenic | 35.0% | |
| TACAGAGAAGGACAATCAAT+TGG | + | chr5.1:13335889-13335908 | MS.gene010630:CDS | 35.0% | |
| TACCCATACAAAAGATGTGT+TGG | - | chr5.1:13336233-13336252 | None:intergenic | 35.0% | |
| TATTACATGAAGCATAGAGG+GGG | + | chr5.1:13337667-13337686 | MS.gene010630:intron | 35.0% | |
| TCCATAAAAATGAGCGGAAT+GGG | - | chr5.1:13336913-13336932 | None:intergenic | 35.0% | |
| TTACTTTGCTTGTGCTTACT+AGG | - | chr5.1:13337113-13337132 | None:intergenic | 35.0% | |
| TTAGAGTCCTCAAATGCAAA+TGG | - | chr5.1:13336400-13336419 | None:intergenic | 35.0% | |
| TTCCATAAAAATGAGCGGAA+TGG | - | chr5.1:13336914-13336933 | None:intergenic | 35.0% | |
| TTCTGTACTGTATTGTAGCT+GGG | + | chr5.1:13336049-13336068 | MS.gene010630:intron | 35.0% | |
| TTTCTGTACTGTATTGTAGC+TGG | + | chr5.1:13336048-13336067 | MS.gene010630:intron | 35.0% | |
| TTTGAAGACAAGTCTATCTG+GGG | - | chr5.1:13334902-13334921 | None:intergenic | 35.0% | |
| ! | AATTTTGTAACAGGGGTCAA+TGG | - | chr5.1:13336135-13336154 | None:intergenic | 35.0% |
| ! | GAAGGGAATTGATGACATAA+TGG | + | chr5.1:13337600-13337619 | MS.gene010630:CDS | 35.0% |
| ! | GTGCTGCTCTTAAATTCATT+TGG | - | chr5.1:13336184-13336203 | None:intergenic | 35.0% |
| ! | TATACATGCATTGATCCAAC+CGG | + | chr5.1:13334949-13334968 | MS.gene010630:intron | 35.0% |
| ! | TGCCAACACATCTTTTGTAT+GGG | + | chr5.1:13336228-13336247 | MS.gene010630:intron | 35.0% |
| ! | TTGCCAACACATCTTTTGTA+TGG | + | chr5.1:13336227-13336246 | MS.gene010630:intron | 35.0% |
| AAGCAGCTCACTGCTTTATA+AGG | + | chr5.1:13337283-13337302 | MS.gene010630:CDS | 40.0% | |
| AATTAAAGTGGCAACGGTTG+TGG | - | chr5.1:13337028-13337047 | None:intergenic | 40.0% | |
| ACAATACGCAGAAGAGTTGT+GGG | + | chr5.1:13337522-13337541 | MS.gene010630:CDS | 40.0% | |
| ACACTTACACTTCAGATCGA+AGG | - | chr5.1:13335057-13335076 | None:intergenic | 40.0% | |
| AGAAGACACCTTCCAATGTA+TGG | - | chr5.1:13335271-13335290 | None:intergenic | 40.0% | |
| ATTACATGAAGCATAGAGGG+GGG | + | chr5.1:13337668-13337687 | MS.gene010630:intron | 40.0% | |
| CAAAGACACCATACATTGGA+AGG | + | chr5.1:13335260-13335279 | MS.gene010630:CDS | 40.0% | |
| CACTGTGATCCTCTTTATTC+AGG | + | chr5.1:13336656-13336675 | MS.gene010630:intron | 40.0% | |
| CCATAAAAATGAGCGGAATG+GGG | - | chr5.1:13336912-13336931 | None:intergenic | 40.0% | |
| CCATTCTTGTCAATACCATC+TGG | - | chr5.1:13335922-13335941 | None:intergenic | 40.0% | |
| CTGAATAAAGAGGATCACAG+TGG | - | chr5.1:13336658-13336677 | None:intergenic | 40.0% | |
| CTTCAACTGTCTCTTGTACT+CGG | - | chr5.1:13337858-13337877 | None:intergenic | 40.0% | |
| CTTCCAATGTATGGTGTCTT+TGG | - | chr5.1:13335262-13335281 | None:intergenic | 40.0% | |
| CTTCTCAACACAAAGATCAC+CGG | + | chr5.1:13335286-13335305 | MS.gene010630:CDS | 40.0% | |
| CTTGTGTACACAAATGATGC+CGG | + | chr5.1:13336309-13336328 | MS.gene010630:CDS | 40.0% | |
| GAATACAATCTCAGCTTGTG+AGG | - | chr5.1:13335949-13335968 | None:intergenic | 40.0% | |
| GACTGTTAACCTTCCACTAA+TGG | - | chr5.1:13335146-13335165 | None:intergenic | 40.0% | |
| GGCATTTCCATTTGCATTTG+AGG | + | chr5.1:13336390-13336409 | MS.gene010630:intron | 40.0% | |
| GGTTTGAGCTAATGGTTAGA+AGG | + | chr5.1:13337707-13337726 | MS.gene010630:intron | 40.0% | |
| GTAATCTGTACTTCAGATCC+AGG | - | chr5.1:13336692-13336711 | None:intergenic | 40.0% | |
| GTACAAGAGACAGTTGAAGA+AGG | + | chr5.1:13337859-13337878 | MS.gene010630:CDS | 40.0% | |
| TAAAGTCTCCACATTAGGGA+GGG | - | chr5.1:13336491-13336510 | None:intergenic | 40.0% | |
| TCAATTGGGATAGTTCCAGA+TGG | + | chr5.1:13335904-13335923 | MS.gene010630:CDS | 40.0% | |
| TGAGGTGATGTTTGTTTGTC+AGG | + | chr5.1:13335102-13335121 | MS.gene010630:intron | 40.0% | |
| TTCAAGTCGCCTGAATAAAG+AGG | - | chr5.1:13336668-13336687 | None:intergenic | 40.0% | |
| TTCTGGTAACATCGATCACT+TGG | - | chr5.1:13337002-13337021 | None:intergenic | 40.0% | |
| ! | CGAGAAGCATGAAGATTACA+AGG | + | chr5.1:13336943-13336962 | MS.gene010630:CDS | 40.0% |
| ! | GGATCTGAAGTACAGATTAC+TGG | + | chr5.1:13336692-13336711 | MS.gene010630:CDS | 40.0% |
| ! | GTTTACATGTGTGGACTGAA+AGG | + | chr5.1:13337571-13337590 | MS.gene010630:CDS | 40.0% |
| ! | TGTAGTTCAATGGTTTGGCA+TGG | + | chr5.1:13337240-13337259 | MS.gene010630:intron | 40.0% |
| ! | TTTTCTACCTTAACAGGAGC+AGG | - | chr5.1:13335193-13335212 | None:intergenic | 40.0% |
| !! | CCAGATGGTATTGACAAGAA+TGG | + | chr5.1:13335919-13335938 | MS.gene010630:CDS | 40.0% |
| AAACGCTAATGCGGATCAAG+TGG | - | chr5.1:13335623-13335642 | None:intergenic | 45.0% | |
| AAGTCAAGCCTGAAGTTCTC+AGG | - | chr5.1:13337439-13337458 | None:intergenic | 45.0% | |
| AGAGAAGTGGAGTTGGAGTA+TGG | - | chr5.1:13334856-13334875 | None:intergenic | 45.0% | |
| AGGTGCTTCTGTAGCAACTT+CGG | - | chr5.1:13335173-13335192 | None:intergenic | 45.0% | |
| AGTGGAGTTGGAGTATGGAA+AGG | - | chr5.1:13334851-13334870 | None:intergenic | 45.0% | |
| AGTTGAAGAAGGCAGAGCAA+TGG | + | chr5.1:13337870-13337889 | MS.gene010630:CDS | 45.0% | |
| ATAAAGCAGTGAGCTGCTTG+TGG | - | chr5.1:13337282-13337301 | None:intergenic | 45.0% | |
| ATGATGCACCTGGTGAAACT+TGG | + | chr5.1:13335311-13335330 | MS.gene010630:CDS | 45.0% | |
| CAAGTGGACAAACGCTAATG+CGG | - | chr5.1:13335632-13335651 | None:intergenic | 45.0% | |
| CACAATACGCAGAAGAGTTG+TGG | + | chr5.1:13337521-13337540 | MS.gene010630:CDS | 45.0% | |
| CAGCTCACTGCTTTATAAGG+AGG | + | chr5.1:13337286-13337305 | MS.gene010630:CDS | 45.0% | |
| GAAAACCACACCAGTCATTC+TGG | - | chr5.1:13335539-13335558 | None:intergenic | 45.0% | |
| GACTCATATTCGCTAGCAAG+TGG | - | chr5.1:13335648-13335667 | None:intergenic | 45.0% | |
| GACTCCCTTAACAACTTCTC+CGG | - | chr5.1:13336331-13336350 | None:intergenic | 45.0% | |
| GATGCCGGAGAAGTTGTTAA+GGG | + | chr5.1:13336324-13336343 | MS.gene010630:CDS | 45.0% | |
| GGACTGAAAGGAATGGAGAA+GGG | + | chr5.1:13337583-13337602 | MS.gene010630:CDS | 45.0% | |
| GTAAAGTCTCCACATTAGGG+AGG | - | chr5.1:13336492-13336511 | None:intergenic | 45.0% | |
| GTTGGAGTATGGAAAGGAGA+CGG | - | chr5.1:13334845-13334864 | None:intergenic | 45.0% | |
| TAAAGCAGTGAGCTGCTTGT+GGG | - | chr5.1:13337281-13337300 | None:intergenic | 45.0% | |
| TCAATTGCTAGCAGTGCTCT+TGG | + | chr5.1:13335967-13335986 | MS.gene010630:CDS | 45.0% | |
| TGATGCCGGAGAAGTTGTTA+AGG | + | chr5.1:13336323-13336342 | MS.gene010630:CDS | 45.0% | |
| TGGACTGAAAGGAATGGAGA+AGG | + | chr5.1:13337582-13337601 | MS.gene010630:CDS | 45.0% | |
| TTAGTGACAGACACTGACAC+CGG | + | chr5.1:13335026-13335045 | MS.gene010630:intron | 45.0% | |
| TTCTTTCTCCCTCCCTAATG+TGG | + | chr5.1:13336480-13336499 | MS.gene010630:intron | 45.0% | |
| ! | ACGGTGGCATTAGGATCTTT+TGG | - | chr5.1:13336743-13336762 | None:intergenic | 45.0% |
| ! | CATGTGTGGACTGAAAGGAA+TGG | + | chr5.1:13337576-13337595 | MS.gene010630:CDS | 45.0% |
| ! | CGTATTGTGCCATTCTGGTT+TGG | - | chr5.1:13337510-13337529 | None:intergenic | 45.0% |
| ! | TTCTGCGTATTGTGCCATTC+TGG | - | chr5.1:13337515-13337534 | None:intergenic | 45.0% |
| ! | TTTTCTCTGCAGTTGGGAAC+TGG | + | chr5.1:13336875-13336894 | MS.gene010630:intron | 45.0% |
| !! | AGAAAGCACCTGAGAACTTC+AGG | + | chr5.1:13337428-13337447 | MS.gene010630:CDS | 45.0% |
| !! | AGCAGTGCTCTTGGTGATTT+TGG | + | chr5.1:13335976-13335995 | MS.gene010630:CDS | 45.0% |
| !! | CACATGGTTTTCAGCACTGA+GGG | + | chr5.1:13335334-13335353 | MS.gene010630:CDS | 45.0% |
| !! | CCCCATTCCGCTCATTTTTA+TGG | + | chr5.1:13336909-13336928 | MS.gene010630:CDS | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+TGG | + | chr5.1:13337699-13337718 | MS.gene010630:intron | 45.0% |
| !! | GTAATGTACCATGATGACGG+TGG | - | chr5.1:13336759-13336778 | None:intergenic | 45.0% |
| AAAGCAGTGAGCTGCTTGTG+GGG | - | chr5.1:13337280-13337299 | None:intergenic | 50.0% | |
| ACCATGTGCCAAGTTTCACC+AGG | - | chr5.1:13335322-13335341 | None:intergenic | 50.0% | |
| ACCTGGTGAAACTTGGCACA+TGG | + | chr5.1:13335318-13335337 | MS.gene010630:CDS | 50.0% | |
| ACTCCACTTCTCTTCCGATC+AGG | + | chr5.1:13334863-13334882 | MS.gene010630:CDS | 50.0% | |
| ATGAAGCATAGAGGGGGGTT+TGG | + | chr5.1:13337673-13337692 | MS.gene010630:intron | 50.0% | |
| GATCGGAAGAGAAGTGGAGT+TGG | - | chr5.1:13334863-13334882 | None:intergenic | 50.0% | |
| GGAGAGGTTCCTTACAGAGA+AGG | + | chr5.1:13335877-13335896 | MS.gene010630:intron | 50.0% | |
| GGTTTGGCATGGCTCTTCTT+GGG | + | chr5.1:13337251-13337270 | MS.gene010630:CDS | 50.0% | |
| GTACAGATTACTGGCCCAGT+TGG | + | chr5.1:13336701-13336720 | MS.gene010630:CDS | 50.0% | |
| GTCTCTGACACCAGAATGAC+TGG | + | chr5.1:13335526-13335545 | MS.gene010630:intron | 50.0% | |
| GTTTCACTCGCTGCCAAAGA+AGG | + | chr5.1:13337622-13337641 | MS.gene010630:CDS | 50.0% | |
| TATTCAGGCGACTTGAAGCC+TGG | + | chr5.1:13336671-13336690 | MS.gene010630:intron | 50.0% | |
| TCCTAATGCCACCGTCATCA+TGG | + | chr5.1:13336748-13336767 | MS.gene010630:CDS | 50.0% | |
| TGACACCAGAATGACTGGTG+TGG | + | chr5.1:13335531-13335550 | MS.gene010630:intron | 50.0% | |
| TGTCCTGATCGGAAGAGAAG+TGG | - | chr5.1:13334869-13334888 | None:intergenic | 50.0% | |
| TTATCAGTGTCGTGTCCGGT+TGG | - | chr5.1:13334967-13334986 | None:intergenic | 50.0% | |
| TTCACCAGGTGCATCATCAC+CGG | - | chr5.1:13335308-13335327 | None:intergenic | 50.0% | |
| ! | GCACATGGTTTTCAGCACTG+AGG | + | chr5.1:13335333-13335352 | MS.gene010630:CDS | 50.0% |
| ! | GGCAACGGTTGTGGATTTTC+TGG | - | chr5.1:13337019-13337038 | None:intergenic | 50.0% |
| ! | TGGTTTGGCATGGCTCTTCT+TGG | + | chr5.1:13337250-13337269 | MS.gene010630:CDS | 50.0% |
| !! | ACCATGATGACGGTGGCATT+AGG | - | chr5.1:13336752-13336771 | None:intergenic | 50.0% |
| !! | AGAAGCACCTGCTCCTGTTA+AGG | + | chr5.1:13335183-13335202 | MS.gene010630:CDS | 50.0% |
| CTGCAGTTGGGAACTGGTAC+TGG | + | chr5.1:13336881-13336900 | MS.gene010630:intron | 55.0% | |
| GGAGTATGGAAAGGAGACGG+CGG | - | chr5.1:13334842-13334861 | None:intergenic | 55.0% | |
| GGGGGTTTGGATAGCTCAAC+TGG | + | chr5.1:13337686-13337705 | MS.gene010630:intron | 55.0% | |
| ! | ATCACCGGTGATGATGCACC+TGG | + | chr5.1:13335301-13335320 | MS.gene010630:CDS | 55.0% |
| ! | CTTCAGATCGAAGGCGTGTC+CGG | - | chr5.1:13335048-13335067 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13334820 | 13337910 | 13334820 | ID=MS.gene010630 |
| chr5.1 | mRNA | 13334820 | 13337910 | 13334820 | ID=MS.gene010630.t1;Parent=MS.gene010630 |
| chr5.1 | exon | 13334820 | 13334924 | 13334820 | ID=MS.gene010630.t1.exon1;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13334820 | 13334924 | 13334820 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13335124 | 13335355 | 13335124 | ID=MS.gene010630.t1.exon2;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13335124 | 13335355 | 13335124 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13335878 | 13336011 | 13335878 | ID=MS.gene010630.t1.exon3;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13335878 | 13336011 | 13335878 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13336288 | 13336366 | 13336288 | ID=MS.gene010630.t1.exon4;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13336288 | 13336366 | 13336288 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13336678 | 13336769 | 13336678 | ID=MS.gene010630.t1.exon5;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13336678 | 13336769 | 13336678 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13336887 | 13336964 | 13336887 | ID=MS.gene010630.t1.exon6;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13336887 | 13336964 | 13336887 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13337245 | 13337307 | 13337245 | ID=MS.gene010630.t1.exon7;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13337245 | 13337307 | 13337245 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13337409 | 13337643 | 13337409 | ID=MS.gene010630.t1.exon8;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13337409 | 13337643 | 13337409 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| chr5.1 | exon | 13337843 | 13337910 | 13337843 | ID=MS.gene010630.t1.exon9;Parent=MS.gene010630.t1 |
| chr5.1 | CDS | 13337843 | 13337910 | 13337843 | ID=cds.MS.gene010630.t1;Parent=MS.gene010630.t1 |
| Gene Sequence |
| Protein sequence |
