Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011532.t1 | XP_003608711.1 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 3.10E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011532.t1 | Q94EI3 | 64.9 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 5.4e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011532.t1 | G7JIW5 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 2.2e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011532 | MS.gene013288 | PPI |
| MS.gene011532 | MS.gene06371 | PPI |
| MS.gene011532 | MS.gene049255 | PPI |
| MS.gene40919 | MS.gene011532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011532.t1 | MTR_4g100930 | 98.387 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011532.t1 | AT3G03490 | 65.462 | 249 | 77 | 3 | 4 | 248 | 5 | 248 | 2.82e-109 | 315 |
| MS.gene011532.t1 | AT5G17550 | 64.898 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 1.16e-107 | 311 |
| MS.gene011532.t1 | AT5G17550 | 66.837 | 196 | 60 | 2 | 53 | 248 | 1 | 191 | 3.33e-87 | 257 |
Find 72 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACATTATACAACAATT+TGG | 0.240762 | 8.2:+22156976 | None:intergenic |
| CTTTCTCCTATTTCCTTCAT+TGG | 0.270847 | 8.2:+22157842 | None:intergenic |
| TTCAGAGACATGAGCATCTT+TGG | 0.287426 | 8.2:+22159702 | None:intergenic |
| GCTGAACCAATGAAGGAAAT+AGG | 0.321677 | 8.2:-22157848 | MS.gene011532:CDS |
| CGGTGCTGGTGTTGATGATT+TGG | 0.326883 | 8.2:-22159608 | MS.gene011532:CDS |
| TGAGAACCATCAAGCATTTC+CGG | 0.327165 | 8.2:+22157000 | None:intergenic |
| GGGGTTCAAGGATTGGGATT+AGG | 0.328924 | 8.2:-22159769 | MS.gene011532:CDS |
| CAAACTAAAGAGGCTGTTAA+AGG | 0.336372 | 8.2:-22159658 | MS.gene011532:CDS |
| CCCTCAGGGGTTCAAGGATT+GGG | 0.343751 | 8.2:-22159775 | MS.gene011532:CDS |
| ATATTCTTCTTTGCTTAAGT+TGG | 0.359988 | 8.2:+22157790 | None:intergenic |
| AGCTCTTGAACAATATCATT+TGG | 0.381715 | 8.2:+22157647 | None:intergenic |
| AAGAATTTATGTTGAGGGTC+TGG | 0.401327 | 8.2:+22159933 | None:intergenic |
| ACCCTCAGGGGTTCAAGGAT+TGG | 0.405268 | 8.2:-22159776 | MS.gene011532:CDS |
| TCTTTACCCTCAGGGGTTCA+AGG | 0.406297 | 8.2:-22159781 | MS.gene011532:CDS |
| AACCCACCCGGTGCCGGTGC+TGG | 0.407959 | 8.2:-22159622 | MS.gene011532:CDS |
| CTGAAGCTCTCAACAAGCTC+AGG | 0.411444 | 8.2:-22159684 | MS.gene011532:CDS |
| AAGATGGTATGATGGAGGAT+TGG | 0.415614 | 8.2:-22159582 | MS.gene011532:CDS |
| AGATGGTATGATGGAGGATT+GGG | 0.420998 | 8.2:-22159581 | MS.gene011532:CDS |
| AAACAGTTTGAAGAGCTTGC+TGG | 0.427973 | 8.2:-22159556 | MS.gene011532:CDS |
| AAGGCTGGCTAAATCGAAAT+CGG | 0.440434 | 8.2:+22157619 | None:intergenic |
| TGAAGAGCTTGCTGGCTCTC+AGG | 0.449155 | 8.2:-22159548 | MS.gene011532:intron |
| AAGGGAAGAATTTATGTTGA+GGG | 0.458376 | 8.2:+22159928 | None:intergenic |
| GGTGCTGGTGTTGATGATTT+GGG | 0.463131 | 8.2:-22159607 | MS.gene011532:CDS |
| TTCATTAACCCACCCGGTGC+CGG | 0.470725 | 8.2:-22159628 | MS.gene011532:CDS |
| CGGGTGGGTTAATGAATTCA+AGG | 0.477559 | 8.2:+22159635 | None:intergenic |
| TTTGTTCGCAGTTTGTTCTC+CGG | 0.479800 | 8.2:+22159816 | None:intergenic |
| AACTTACAACTGGCCAAGGC+TGG | 0.488235 | 8.2:+22157604 | None:intergenic |
| GCGTATTACTGTCGAGAAGT+TGG | 0.489645 | 8.2:+22160067 | None:intergenic |
| GAGTCACCTTCTTTACCCTC+AGG | 0.500638 | 8.2:-22159790 | MS.gene011532:CDS |
| TTATGCTCTTCCAACCACTT+AGG | 0.502187 | 8.2:+22157815 | None:intergenic |
| ATCAACACCAGCACCGGCAC+CGG | 0.505652 | 8.2:+22159615 | None:intergenic |
| AGATCTCCGGAAATGCTTGA+TGG | 0.505855 | 8.2:-22157006 | MS.gene011532:CDS |
| GGACAGAAGTTGTTGCATCA+TGG | 0.507558 | 8.2:+22157883 | None:intergenic |
| GTTGATGATTTGGGTAAAGA+TGG | 0.510217 | 8.2:-22159598 | MS.gene011532:CDS |
| TCTTGAACAATATCATTTGG+AGG | 0.510987 | 8.2:+22157650 | None:intergenic |
| GTTCGTATTGGTGTGAATAC+CGG | 0.512716 | 8.2:+22157765 | None:intergenic |
| GATACTTGCTGAACCAATGA+AGG | 0.517457 | 8.2:-22157855 | MS.gene011532:CDS |
| GATTTCGATTTAGCCAGCCT+TGG | 0.517633 | 8.2:-22157617 | MS.gene011532:CDS |
| GGTTCCGTATCAGTTCGTAT+TGG | 0.524014 | 8.2:+22157753 | None:intergenic |
| ACATAAATTCTTCCCTTCCA+AGG | 0.524040 | 8.2:-22159922 | MS.gene011532:intron |
| CACACCAATACGAACTGATA+CGG | 0.527644 | 8.2:-22157757 | MS.gene011532:CDS |
| TTAGGACATGGAATCTATTG+TGG | 0.529712 | 8.2:-22157909 | MS.gene011532:intron |
| TGGTTCAGCAAGTATCTCCT+TGG | 0.529723 | 8.2:+22157862 | None:intergenic |
| AGGCTGGCTAAATCGAAATC+GGG | 0.532111 | 8.2:+22157620 | None:intergenic |
| AGTGAAAGACTGACCTTGGA+AGG | 0.534487 | 8.2:+22159909 | None:intergenic |
| CCCAATCCTTGAACCCCTGA+GGG | 0.534529 | 8.2:+22159775 | None:intergenic |
| GAAGGGAAGAATTTATGTTG+AGG | 0.539226 | 8.2:+22159927 | None:intergenic |
| GAGAAGTTGGTCGAGGTCGT+CGG | 0.540233 | 8.2:+22160080 | None:intergenic |
| CAAATCATCAACACCAGCAC+CGG | 0.541279 | 8.2:+22159609 | None:intergenic |
| GCTCAGGGAGCAAACTAAAG+AGG | 0.542628 | 8.2:-22159668 | MS.gene011532:CDS |
| TGAACCCCTGAGGGTAAAGA+AGG | 0.544395 | 8.2:+22159784 | None:intergenic |
| CTTGAATTCATTAACCCACC+CGG | 0.551766 | 8.2:-22159634 | MS.gene011532:CDS |
| AGTCACCTTCTTTACCCTCA+GGG | 0.552704 | 8.2:-22159789 | MS.gene011532:CDS |
| TTTGGGTAAAGATGGTATGA+TGG | 0.563025 | 8.2:-22159590 | MS.gene011532:CDS |
| CAATGAAGGAAATAGGAGAA+AGG | 0.569986 | 8.2:-22157841 | MS.gene011532:CDS |
| AAGGAACTTACAACTGGCCA+AGG | 0.573694 | 8.2:+22157600 | None:intergenic |
| GTCGTCGGAGTGGTCAGCCA+TGG | 0.574664 | 8.2:+22160095 | None:intergenic |
| AGAAAGGTATCCTAAGTGGT+TGG | 0.579134 | 8.2:-22157825 | MS.gene011532:CDS |
| TACTGTCGAGAAGTTGGTCG+AGG | 0.581215 | 8.2:+22160073 | None:intergenic |
| GGGTAAAGATGGTATGATGG+AGG | 0.584034 | 8.2:-22159587 | MS.gene011532:CDS |
| CACCAGCACCGGCACCGGGT+GGG | 0.597723 | 8.2:+22159620 | None:intergenic |
| TAAGCAAAGAAGAATATGAC+CGG | 0.598976 | 8.2:-22157784 | MS.gene011532:CDS |
| TCAACACCAGCACCGGCACC+GGG | 0.601415 | 8.2:+22159616 | None:intergenic |
| ATGCAGAAAATGCAAGAATG+TGG | 0.608329 | 8.2:-22157677 | MS.gene011532:CDS |
| TAGGAGAAAGGTATCCTAAG+TGG | 0.608549 | 8.2:-22157829 | MS.gene011532:CDS |
| GATGCAACAACTTCTGTCCA+AGG | 0.611456 | 8.2:-22157879 | MS.gene011532:CDS |
| TGAAGCTCTCAACAAGCTCA+GGG | 0.635760 | 8.2:-22159683 | MS.gene011532:CDS |
| GTCACCTTCTTTACCCTCAG+GGG | 0.638813 | 8.2:-22159788 | MS.gene011532:CDS |
| ACACCAGCACCGGCACCGGG+TGG | 0.640271 | 8.2:+22159619 | None:intergenic |
| TCCCAATCCTTGAACCCCTG+AGG | 0.641178 | 8.2:+22159774 | None:intergenic |
| GTTGGTCGAGGTCGTCGGAG+TGG | 0.647012 | 8.2:+22160085 | None:intergenic |
| GTGAAAGACTGACCTTGGAA+GGG | 0.658584 | 8.2:+22159910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATACTATATGTATAA+AGG | + | chr8.2:22158066-22158085 | None:intergenic | 10.0% |
| !!! | TTTTAATACTAAAGAATAAT+AGG | + | chr8.2:22157606-22157625 | None:intergenic | 10.0% |
| !! | AAGTGAAAATAATGAATAAA+AGG | + | chr8.2:22157190-22157209 | None:intergenic | 15.0% |
| !! | GGAAACTTTATTAATAAAAA+TGG | + | chr8.2:22158255-22158274 | None:intergenic | 15.0% |
| !! | GTTTATTTATTTATTAGAAC+CGG | - | chr8.2:22157236-22157255 | MS.gene011532:intron | 15.0% |
| !!! | AATATTTCAGTTCATATTTT+TGG | - | chr8.2:22159679-22159698 | MS.gene011532:CDS | 15.0% |
| !!! | CCAAAAATTTCATTTTTAAT+TGG | - | chr8.2:22158590-22158609 | MS.gene011532:intron | 15.0% |
| !!! | CCAATTAAAAATGAAATTTT+TGG | + | chr8.2:22158593-22158612 | None:intergenic | 15.0% |
| !!! | TAAATCATTTTAATGTAAAG+AGG | - | chr8.2:22158377-22158396 | MS.gene011532:intron | 15.0% |
| !!! | TTAATAATTTTTTTAGGACA+TGG | - | chr8.2:22159150-22159169 | MS.gene011532:intron | 15.0% |
| !! | AAAAAAATACAAAATTAGGG+AGG | + | chr8.2:22158277-22158296 | None:intergenic | 20.0% |
| !! | AAAAAATACAAAATTAGGGA+GGG | + | chr8.2:22158276-22158295 | None:intergenic | 20.0% |
| !! | ATTTGAAAAGCAAGAAAAAA+GGG | - | chr8.2:22157333-22157352 | MS.gene011532:intron | 20.0% |
| !! | TTATTTATTTACTTTCACTG+AGG | - | chr8.2:22159770-22159789 | MS.gene011532:CDS | 20.0% |
| !!! | AAAAAAACTAGTTTCTTTCA+TGG | + | chr8.2:22158827-22158846 | None:intergenic | 20.0% |
| !!! | ATCTTCTAAGAATAAACTTA+TGG | - | chr8.2:22158128-22158147 | MS.gene011532:intron | 20.0% |
| !!! | CTTTTTCATAAACTTCATTA+AGG | + | chr8.2:22159342-22159361 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTCATTTTGTTA+TGG | + | chr8.2:22158448-22158467 | None:intergenic | 20.0% |
| !!! | TTTCTATTCAATCTTTTTTC+AGG | - | chr8.2:22157100-22157119 | MS.gene011532:intron | 20.0% |
| ! | AAATCACTCATTGAGTATTT+AGG | + | chr8.2:22159604-22159623 | None:intergenic | 25.0% |
| ! | AATATGATATGACTACTCTT+AGG | - | chr8.2:22157549-22157568 | MS.gene011532:intron | 25.0% |
| ! | ACATTAAAATGATTTACGCA+AGG | + | chr8.2:22158373-22158392 | None:intergenic | 25.0% |
| ! | ATACTGTGATAAAATCAAGA+AGG | + | chr8.2:22159493-22159512 | None:intergenic | 25.0% |
| ! | ATATTCTTCTTTGCTTAAGT+TGG | + | chr8.2:22159284-22159303 | None:intergenic | 25.0% |
| ! | CAAAAAGTAAAAGATGTAGT+AGG | - | chr8.2:22158486-22158505 | MS.gene011532:intron | 25.0% |
| ! | CATATCAAATAGAACATTGT+TGG | - | chr8.2:22159811-22159830 | MS.gene011532:CDS | 25.0% |
| ! | GAAGTTTATGAAAAAGATTC+TGG | - | chr8.2:22159346-22159365 | MS.gene011532:intron | 25.0% |
| ! | GATTTGAAAAGCAAGAAAAA+AGG | - | chr8.2:22157332-22157351 | MS.gene011532:intron | 25.0% |
| ! | GCATAAAAGAAATATGTAAG+TGG | - | chr8.2:22157715-22157734 | MS.gene011532:CDS | 25.0% |
| ! | GGAATTTGACTAATAGTAAT+AGG | - | chr8.2:22159629-22159648 | MS.gene011532:CDS | 25.0% |
| ! | GGATAAAAGAAATATGTAAG+TGG | - | chr8.2:22157939-22157958 | MS.gene011532:intron | 25.0% |
| ! | GTATAAAGGAAATATGTAAG+TGG | + | chr8.2:22158052-22158071 | None:intergenic | 25.0% |
| ! | TAAACAGTAATTGACAATCA+TGG | + | chr8.2:22158853-22158872 | None:intergenic | 25.0% |
| ! | TAATCATAGTTAATGTGCTT+TGG | - | chr8.2:22157911-22157930 | MS.gene011532:intron | 25.0% |
| !! | ACAAAGGTATAAATCAACAA+TGG | + | chr8.2:22159940-22159959 | None:intergenic | 25.0% |
| !! | AGGAATTATTGCTATTAAAC+TGG | - | chr8.2:22159855-22159874 | MS.gene011532:intron | 25.0% |
| !! | AGTGAAATTTTCAAATTCTG+AGG | + | chr8.2:22158929-22158948 | None:intergenic | 25.0% |
| !! | ATAATAGGCAAAAAGCATAA+AGG | + | chr8.2:22157591-22157610 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGCTTTTCAAATC+AGG | + | chr8.2:22157332-22157351 | None:intergenic | 25.0% |
| AAGAATTAGAGATAAGAGAG+AGG | + | chr8.2:22157082-22157101 | None:intergenic | 30.0% | |
| AAGGGAAGAATTTATGTTGA+GGG | + | chr8.2:22157146-22157165 | None:intergenic | 30.0% | |
| AATGTACAATGTTCAAATCC+CGG | - | chr8.2:22158205-22158224 | MS.gene011532:intron | 30.0% | |
| ACTACTTGTCATAAAAGACA+TGG | + | chr8.2:22158407-22158426 | None:intergenic | 30.0% | |
| AGAATTAGAGATAAGAGAGA+GGG | + | chr8.2:22157081-22157100 | None:intergenic | 30.0% | |
| AGCTCTTGAACAATATCATT+TGG | + | chr8.2:22159427-22159446 | None:intergenic | 30.0% | |
| AGTAAAAGATGTAGTAGGTT+AGG | - | chr8.2:22158491-22158510 | MS.gene011532:intron | 30.0% | |
| ATTTCCAAACTATAGTACAC+CGG | + | chr8.2:22157745-22157764 | None:intergenic | 30.0% | |
| ATTTCCAAACTATAGTACAG+CGG | + | chr8.2:22157969-22157988 | None:intergenic | 30.0% | |
| CCAATTTATTTGAGTGAGTA+TGG | + | chr8.2:22159720-22159739 | None:intergenic | 30.0% | |
| CCATACTCACTCAAATAAAT+TGG | - | chr8.2:22159717-22159736 | MS.gene011532:CDS | 30.0% | |
| GATTTGAACATTGTACATTG+AGG | + | chr8.2:22158204-22158223 | None:intergenic | 30.0% | |
| TAAGCAAAGAAGAATATGAC+CGG | - | chr8.2:22159287-22159306 | MS.gene011532:intron | 30.0% | |
| TCTGAACTAAAAAAGAGACT+AGG | - | chr8.2:22158319-22158338 | MS.gene011532:intron | 30.0% | |
| TCTTGAACAATATCATTTGG+AGG | + | chr8.2:22159424-22159443 | None:intergenic | 30.0% | |
| TGATGTCACACATAATATGT+AGG | + | chr8.2:22160021-22160040 | None:intergenic | 30.0% | |
| ! | ACTCAATGAGTGATTTTTCA+TGG | - | chr8.2:22159608-22159627 | MS.gene011532:CDS | 30.0% |
| ! | ATTATGTGATCTAACTTGCA+AGG | - | chr8.2:22159835-22159854 | MS.gene011532:intron | 30.0% |
| ! | GTTTGAGATTGAGTTAAAGA+AGG | + | chr8.2:22157213-22157232 | None:intergenic | 30.0% |
| !! | AGTTAATGTGCTTTGGAATT+TGG | - | chr8.2:22157918-22157937 | MS.gene011532:intron | 30.0% |
| !!! | AAATTTTCAAATTCTGAGGC+AGG | + | chr8.2:22158925-22158944 | None:intergenic | 30.0% |
| AAGAATTTATGTTGAGGGTC+TGG | + | chr8.2:22157141-22157160 | None:intergenic | 35.0% | |
| ACATAAATTCTTCCCTTCCA+AGG | - | chr8.2:22157149-22157168 | MS.gene011532:intron | 35.0% | |
| ATCAAGAAGGAACTTACAAC+TGG | + | chr8.2:22159480-22159499 | None:intergenic | 35.0% | |
| ATGCAGAAAATGCAAGAATG+TGG | - | chr8.2:22159394-22159413 | MS.gene011532:intron | 35.0% | |
| ATTTACTTTCACTGAGGAGA+GGG | - | chr8.2:22159776-22159795 | MS.gene011532:CDS | 35.0% | |
| CAAACTAAAGAGGCTGTTAA+AGG | - | chr8.2:22157413-22157432 | MS.gene011532:intron | 35.0% | |
| CAAGAAAAAAGGGAAACAGA+AGG | - | chr8.2:22157343-22157362 | MS.gene011532:intron | 35.0% | |
| CAATGAAGGAAATAGGAGAA+AGG | - | chr8.2:22159230-22159249 | MS.gene011532:intron | 35.0% | |
| CTCTTAACTAGACACTTCTT+TGG | + | chr8.2:22158521-22158540 | None:intergenic | 35.0% | |
| CTTTCTCCTATTTCCTTCAT+TGG | + | chr8.2:22159232-22159251 | None:intergenic | 35.0% | |
| GAACTAAAAAAGAGACTAGG+AGG | - | chr8.2:22158322-22158341 | MS.gene011532:intron | 35.0% | |
| GAAGGGAAGAATTTATGTTG+AGG | + | chr8.2:22157147-22157166 | None:intergenic | 35.0% | |
| GATGGTAGTAAAATGATCGT+TGG | - | chr8.2:22158227-22158246 | MS.gene011532:intron | 35.0% | |
| GGAACTATGTGTAAGGAATT+TGG | + | chr8.2:22158904-22158923 | None:intergenic | 35.0% | |
| TAATCATAGTTAACGCGCTT+TGG | - | chr8.2:22157687-22157706 | MS.gene011532:CDS | 35.0% | |
| TATTTACTTTCACTGAGGAG+AGG | - | chr8.2:22159775-22159794 | MS.gene011532:CDS | 35.0% | |
| TGAAGCAACACTTTGATCTA+AGG | + | chr8.2:22158969-22158988 | None:intergenic | 35.0% | |
| TTAGGACATGGAATCTATTG+TGG | - | chr8.2:22159162-22159181 | MS.gene011532:intron | 35.0% | |
| TTATGGCAATGATACACATG+AGG | - | chr8.2:22158145-22158164 | MS.gene011532:intron | 35.0% | |
| TTCATTGTAACCAAATGCAG+TGG | - | chr8.2:22158725-22158744 | MS.gene011532:intron | 35.0% | |
| TTGGGTTCTTATGTGTCAAT+CGG | - | chr8.2:22158767-22158786 | MS.gene011532:intron | 35.0% | |
| TTGTTATGGCTCATTGTCAA+AGG | + | chr8.2:22158434-22158453 | None:intergenic | 35.0% | |
| TTTCCAAACTATAGTACACC+GGG | + | chr8.2:22157744-22157763 | None:intergenic | 35.0% | |
| TTTCCAAACTATAGTACAGC+GGG | + | chr8.2:22157968-22157987 | None:intergenic | 35.0% | |
| TTTGGGTAAAGATGGTATGA+TGG | - | chr8.2:22157481-22157500 | MS.gene011532:intron | 35.0% | |
| ! | AAGTATTACTGTCTGAAACC+TGG | - | chr8.2:22158656-22158675 | MS.gene011532:intron | 35.0% |
| ! | AAGTTATCAGAAGAGCACAA+AGG | + | chr8.2:22159956-22159975 | None:intergenic | 35.0% |
| ! | ACGATCATTTTACTACCATC+CGG | + | chr8.2:22158227-22158246 | None:intergenic | 35.0% |
| ! | GTTGATGAGTTACTCAGTAT+TGG | - | chr8.2:22158997-22159016 | MS.gene011532:intron | 35.0% |
| ! | TGTTAGTGATTAGCTGCATT+TGG | - | chr8.2:22157662-22157681 | MS.gene011532:CDS | 35.0% |
| !! | GTTGATGATTTGGGTAAAGA+TGG | - | chr8.2:22157473-22157492 | MS.gene011532:intron | 35.0% |
| !!! | CAATCTTTTTTCAGGTGCTT+TGG | - | chr8.2:22157108-22157127 | MS.gene011532:intron | 35.0% |
| AAACAGTTTGAAGAGCTTGC+TGG | - | chr8.2:22157515-22157534 | MS.gene011532:intron | 40.0% | |
| AGTTTCTTTCATGGTGCAAG+TGG | + | chr8.2:22158818-22158837 | None:intergenic | 40.0% | |
| ATGTGTAAGGAATTTGGCAG+AGG | + | chr8.2:22158898-22158917 | None:intergenic | 40.0% | |
| ATTAGAGATAAGAGAGAGGG+CGG | + | chr8.2:22157078-22157097 | None:intergenic | 40.0% | |
| CACACCAATACGAACTGATA+CGG | - | chr8.2:22159314-22159333 | MS.gene011532:intron | 40.0% | |
| CATGTACCTCTCTAAACTGT+AGG | + | chr8.2:22158690-22158709 | None:intergenic | 40.0% | |
| CTTACTGTATGCAACACCTT+GGG | - | chr8.2:22158749-22158768 | MS.gene011532:intron | 40.0% | |
| CTTGAATTCATTAACCCACC+CGG | - | chr8.2:22157437-22157456 | MS.gene011532:intron | 40.0% | |
| GAAATATGTAAGTGGTGTCC+CGG | - | chr8.2:22157723-22157742 | MS.gene011532:CDS | 40.0% | |
| GATTGACACATAAGAACCCA+AGG | + | chr8.2:22158768-22158787 | None:intergenic | 40.0% | |
| GCTGAACCAATGAAGGAAAT+AGG | - | chr8.2:22159223-22159242 | MS.gene011532:intron | 40.0% | |
| GTTCTTATGTGTCAATCGGA+TGG | - | chr8.2:22158771-22158790 | MS.gene011532:intron | 40.0% | |
| TACAATGTTCAAATCCCGGA+TGG | - | chr8.2:22158209-22158228 | MS.gene011532:intron | 40.0% | |
| TACAGTAAGACCACTGCATT+TGG | + | chr8.2:22158738-22158757 | None:intergenic | 40.0% | |
| TCTTACTGTATGCAACACCT+TGG | - | chr8.2:22158748-22158767 | MS.gene011532:intron | 40.0% | |
| TGAGAACCATCAAGCATTTC+CGG | + | chr8.2:22160074-22160093 | None:intergenic | 40.0% | |
| TTATGCTCTTCCAACCACTT+AGG | + | chr8.2:22159259-22159278 | None:intergenic | 40.0% | |
| TTCAGAGACATGAGCATCTT+TGG | + | chr8.2:22157372-22157391 | None:intergenic | 40.0% | |
| TTTACTTTCACTGAGGAGAG+GGG | - | chr8.2:22159777-22159796 | MS.gene011532:CDS | 40.0% | |
| ! | AAGATGGTATGATGGAGGAT+TGG | - | chr8.2:22157489-22157508 | MS.gene011532:intron | 40.0% |
| ! | AAGGCTGGCTAAATCGAAAT+CGG | + | chr8.2:22159455-22159474 | None:intergenic | 40.0% |
| ! | AGATGGTATGATGGAGGATT+GGG | - | chr8.2:22157490-22157509 | MS.gene011532:intron | 40.0% |
| ! | CATTTTCTTCTGCAGATCTC+CGG | - | chr8.2:22160052-22160071 | MS.gene011532:intron | 40.0% |
| ! | CGATCATTTTACTACCATCC+GGG | + | chr8.2:22158226-22158245 | None:intergenic | 40.0% |
| ! | GAAGTGTTTGACATTGTCCA+AGG | - | chr8.2:22158623-22158642 | MS.gene011532:intron | 40.0% |
| ! | GATACTTGCTGAACCAATGA+AGG | - | chr8.2:22159216-22159235 | MS.gene011532:intron | 40.0% |
| ! | GTTCGTATTGGTGTGAATAC+CGG | + | chr8.2:22159309-22159328 | None:intergenic | 40.0% |
| ! | TTGAGTGAGTATGGAGTATC+AGG | + | chr8.2:22159711-22159730 | None:intergenic | 40.0% |
| ! | TTGTATTGTGTCGTTCGTAC+TGG | + | chr8.2:22158020-22158039 | None:intergenic | 40.0% |
| ! | TTTGTTCGCAGTTTGTTCTC+CGG | + | chr8.2:22157258-22157277 | None:intergenic | 40.0% |
| !! | AGAAAGGTATCCTAAGTGGT+TGG | - | chr8.2:22159246-22159265 | MS.gene011532:intron | 40.0% |
| !! | AGAAGTGTCTAGTTAAGAGC+AGG | - | chr8.2:22158522-22158541 | MS.gene011532:intron | 40.0% |
| !! | TAGGAGAAAGGTATCCTAAG+TGG | - | chr8.2:22159242-22159261 | MS.gene011532:intron | 40.0% |
| !!! | ACAGCAGCTGCTTTTGTTAT+TGG | + | chr8.2:22159070-22159089 | None:intergenic | 40.0% |
| AAGGAACTTACAACTGGCCA+AGG | + | chr8.2:22159474-22159493 | None:intergenic | 45.0% | |
| AATACTTCTCCGACACTCCT+TGG | + | chr8.2:22158643-22158662 | None:intergenic | 45.0% | |
| AGATCTCCGGAAATGCTTGA+TGG | - | chr8.2:22160065-22160084 | MS.gene011532:intron | 45.0% | |
| AGTCACCTTCTTTACCCTCA+GGG | - | chr8.2:22157282-22157301 | MS.gene011532:intron | 45.0% | |
| AGTGAAAGACTGACCTTGGA+AGG | + | chr8.2:22157165-22157184 | None:intergenic | 45.0% | |
| CAAATCATCAACACCAGCAC+CGG | + | chr8.2:22157465-22157484 | None:intergenic | 45.0% | |
| CAGAATATCCTGAAGCTACC+AGG | - | chr8.2:22159881-22159900 | MS.gene011532:intron | 45.0% | |
| GATGCAACAACTTCTGTCCA+AGG | - | chr8.2:22159192-22159211 | MS.gene011532:intron | 45.0% | |
| GATTTCGATTTAGCCAGCCT+TGG | - | chr8.2:22159454-22159473 | MS.gene011532:intron | 45.0% | |
| GCGTATTACTGTCGAGAAGT+TGG | + | chr8.2:22157007-22157026 | None:intergenic | 45.0% | |
| GGACAGAAGTTGTTGCATCA+TGG | + | chr8.2:22159191-22159210 | None:intergenic | 45.0% | |
| GGGTAAAGATGGTATGATGG+AGG | - | chr8.2:22157484-22157503 | MS.gene011532:intron | 45.0% | |
| GGTTCCGTATCAGTTCGTAT+TGG | + | chr8.2:22159321-22159340 | None:intergenic | 45.0% | |
| GTCTAGTTAAGAGCAGGTGT+TGG | - | chr8.2:22158528-22158547 | MS.gene011532:intron | 45.0% | |
| GTGAAAGACTGACCTTGGAA+GGG | + | chr8.2:22157164-22157183 | None:intergenic | 45.0% | |
| TGAAGCTCTCAACAAGCTCA+GGG | - | chr8.2:22157388-22157407 | MS.gene011532:intron | 45.0% | |
| TGAGGCAGGAACTATGTGTA+AGG | + | chr8.2:22158911-22158930 | None:intergenic | 45.0% | |
| TGGTTCAGCAAGTATCTCCT+TGG | + | chr8.2:22159212-22159231 | None:intergenic | 45.0% | |
| TGTCCCGCTGTACTATAGTT+TGG | - | chr8.2:22157962-22157981 | MS.gene011532:intron | 45.0% | |
| TGTCCCGGTGTACTATAGTT+TGG | - | chr8.2:22157738-22157757 | MS.gene011532:CDS | 45.0% | |
| ! | AGGCTGGCTAAATCGAAATC+GGG | + | chr8.2:22159454-22159473 | None:intergenic | 45.0% |
| ! | ATTACTGTCTGAAACCTGGC+TGG | - | chr8.2:22158660-22158679 | MS.gene011532:intron | 45.0% |
| ! | TGACATTGTCCAAGGAGTGT+CGG | - | chr8.2:22158631-22158650 | MS.gene011532:intron | 45.0% |
| !! | CGGGTGGGTTAATGAATTCA+AGG | + | chr8.2:22157439-22157458 | None:intergenic | 45.0% |
| !! | GGTGCTGGTGTTGATGATTT+GGG | - | chr8.2:22157464-22157483 | MS.gene011532:intron | 45.0% |
| !! | TTAAGAGCAGGTGTTGGCTT+GGG | - | chr8.2:22158534-22158553 | MS.gene011532:intron | 45.0% |
| !! | AAAAAAAAAATACAAAATTA+GGG | + | chr8.2:22158280-22158299 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAATACAAAATT+AGG | + | chr8.2:22158281-22158300 | None:intergenic | 5.0% |
| !!! | ATAATGTTAATAATTTTTTT+AGG | - | chr8.2:22159144-22159163 | MS.gene011532:intron | 5.0% |
| AACTTACAACTGGCCAAGGC+TGG | + | chr8.2:22159470-22159489 | None:intergenic | 50.0% | |
| AGCCTATGATCCTAGGCACT+GGG | - | chr8.2:22159908-22159927 | MS.gene011532:intron | 50.0% | |
| AGGCCTTAGCCTATGATCCT+AGG | - | chr8.2:22159901-22159920 | MS.gene011532:intron | 50.0% | |
| CTGAAGCTCTCAACAAGCTC+AGG | - | chr8.2:22157387-22157406 | MS.gene011532:intron | 50.0% | |
| GAGTCACCTTCTTTACCCTC+AGG | - | chr8.2:22157281-22157300 | MS.gene011532:intron | 50.0% | |
| GCTCAGGGAGCAAACTAAAG+AGG | - | chr8.2:22157403-22157422 | MS.gene011532:intron | 50.0% | |
| GGCACACCTACAGTTTAGAG+AGG | - | chr8.2:22158681-22158700 | MS.gene011532:intron | 50.0% | |
| GGGGTTCAAGGATTGGGATT+AGG | - | chr8.2:22157302-22157321 | MS.gene011532:intron | 50.0% | |
| GGTGAGTGAAAGACTGACCT+TGG | + | chr8.2:22157169-22157188 | None:intergenic | 50.0% | |
| GTCACCTTCTTTACCCTCAG+GGG | - | chr8.2:22157283-22157302 | MS.gene011532:intron | 50.0% | |
| GTGCCTAGGATCATAGGCTA+AGG | + | chr8.2:22159907-22159926 | None:intergenic | 50.0% | |
| TAGCCTATGATCCTAGGCAC+TGG | - | chr8.2:22159907-22159926 | MS.gene011532:intron | 50.0% | |
| TAGGATCATAGGCTAAGGCC+TGG | + | chr8.2:22159902-22159921 | None:intergenic | 50.0% | |
| TCTTTACCCTCAGGGGTTCA+AGG | - | chr8.2:22157290-22157309 | MS.gene011532:intron | 50.0% | |
| TGAACCCCTGAGGGTAAAGA+AGG | + | chr8.2:22157290-22157309 | None:intergenic | 50.0% | |
| ! | CACATGAGGTGCTAGCTTGA+TGG | - | chr8.2:22158159-22158178 | MS.gene011532:intron | 50.0% |
| ! | TACTGTCGAGAAGTTGGTCG+AGG | + | chr8.2:22157001-22157020 | None:intergenic | 50.0% |
| !! | CGGTGCTGGTGTTGATGATT+TGG | - | chr8.2:22157463-22157482 | MS.gene011532:intron | 50.0% |
| !! | GTTAAGAGCAGGTGTTGGCT+TGG | - | chr8.2:22158533-22158552 | MS.gene011532:intron | 50.0% |
| AAACTGTAGGTGTGCCAGCC+AGG | + | chr8.2:22158677-22158696 | None:intergenic | 55.0% | |
| ACCCTCAGGGGTTCAAGGAT+TGG | - | chr8.2:22157295-22157314 | MS.gene011532:intron | 55.0% | |
| AGATAAGAGAGAGGGCGGTG+AGG | + | chr8.2:22157073-22157092 | None:intergenic | 55.0% | |
| CCCAATCCTTGAACCCCTGA+GGG | + | chr8.2:22157299-22157318 | None:intergenic | 55.0% | |
| CCCTCAGGGGTTCAAGGATT+GGG | - | chr8.2:22157296-22157315 | MS.gene011532:intron | 55.0% | |
| TCCCAATCCTTGAACCCCTG+AGG | + | chr8.2:22157300-22157319 | None:intergenic | 55.0% | |
| TGCCCAGTGCCTAGGATCAT+AGG | + | chr8.2:22159913-22159932 | None:intergenic | 55.0% | |
| TTCATTAACCCACCCGGTGC+CGG | - | chr8.2:22157443-22157462 | MS.gene011532:intron | 55.0% | |
| ! | GAGAAGTTGGTCGAGGTCGT+CGG | + | chr8.2:22156994-22157013 | None:intergenic | 55.0% |
| !! | TGAAGAGCTTGCTGGCTCTC+AGG | - | chr8.2:22157523-22157542 | MS.gene011532:intron | 55.0% |
| AAGAGAGAGGGCGGTGAGGA+GGG | + | chr8.2:22157069-22157088 | None:intergenic | 60.0% | |
| ATGGATGCTGCCCAGTGCCT+AGG | + | chr8.2:22159921-22159940 | None:intergenic | 60.0% | |
| GGCTAAGGCCTGGTAGCTTC+AGG | + | chr8.2:22159892-22159911 | None:intergenic | 60.0% | |
| TAAGAGAGAGGGCGGTGAGG+AGG | + | chr8.2:22157070-22157089 | None:intergenic | 60.0% | |
| !! | ATCAACACCAGCACCGGCAC+CGG | + | chr8.2:22157459-22157478 | None:intergenic | 60.0% |
| GTTGGTCGAGGTCGTCGGAG+TGG | + | chr8.2:22156989-22157008 | None:intergenic | 65.0% | |
| !! | CAGGTGTTGGCTTGGGCGCT+TGG | - | chr8.2:22158541-22158560 | MS.gene011532:intron | 65.0% |
| !! | GTGTTGGCTTGGGCGCTTGG+CGG | - | chr8.2:22158544-22158563 | MS.gene011532:intron | 65.0% |
| !! | TCAACACCAGCACCGGCACC+GGG | + | chr8.2:22157458-22157477 | None:intergenic | 65.0% |
| !! | AACCCACCCGGTGCCGGTGC+TGG | - | chr8.2:22157449-22157468 | MS.gene011532:intron | 75.0% |
| !! | ACACCAGCACCGGCACCGGG+TGG | + | chr8.2:22157455-22157474 | None:intergenic | 75.0% |
| !! | CACCAGCACCGGCACCGGGT+GGG | + | chr8.2:22157454-22157473 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 22156978 | 22160115 | 22156978 | ID=MS.gene011532 |
| chr8.2 | mRNA | 22156978 | 22160115 | 22156978 | ID=MS.gene011532.t1;Parent=MS.gene011532 |
| chr8.2 | exon | 22160076 | 22160115 | 22160076 | ID=MS.gene011532.t1.exon1;Parent=MS.gene011532.t1 |
| chr8.2 | CDS | 22160076 | 22160115 | 22160076 | ID=cds.MS.gene011532.t1;Parent=MS.gene011532.t1 |
| chr8.2 | exon | 22159923 | 22159971 | 22159923 | ID=MS.gene011532.t1.exon2;Parent=MS.gene011532.t1 |
| chr8.2 | CDS | 22159923 | 22159971 | 22159923 | ID=cds.MS.gene011532.t1;Parent=MS.gene011532.t1 |
| chr8.2 | exon | 22159549 | 22159840 | 22159549 | ID=MS.gene011532.t1.exon3;Parent=MS.gene011532.t1 |
| chr8.2 | CDS | 22159549 | 22159840 | 22159549 | ID=cds.MS.gene011532.t1;Parent=MS.gene011532.t1 |
| chr8.2 | exon | 22157611 | 22157927 | 22157611 | ID=MS.gene011532.t1.exon4;Parent=MS.gene011532.t1 |
| chr8.2 | CDS | 22157611 | 22157927 | 22157611 | ID=cds.MS.gene011532.t1;Parent=MS.gene011532.t1 |
| chr8.2 | exon | 22156978 | 22157026 | 22156978 | ID=MS.gene011532.t1.exon5;Parent=MS.gene011532.t1 |
| chr8.2 | CDS | 22156978 | 22157026 | 22156978 | ID=cds.MS.gene011532.t1;Parent=MS.gene011532.t1 |
| Gene Sequence |
| Protein sequence |
