Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06371.t1 | XP_024633775.1 | 95.3 | 107 | 5 | 0 | 1 | 107 | 35 | 141 | 2.60E-51 | 211.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06371.t1 | O65154 | 53.8 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 3.8e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06371.t1 | G7JC59 | 95.3 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 1.9e-51 | 211.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene06371 | 0.931156 | 5.73E-94 | -1.69E-46 |
| MS.gene049340 | MS.gene06371 | 0.826997 | 1.99E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene06371 | 0.837358 | 5.45E-57 | -1.69E-46 |
| MS.gene049821 | MS.gene06371 | 0.819013 | 1.45E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene06371 | 0.822716 | 2.04E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene06371 | 0.816556 | 5.20E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene06371 | 0.857253 | 1.85E-62 | -1.69E-46 |
| MS.gene050303 | MS.gene06371 | 0.814231 | 1.71E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene06371 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene06371 | 0.818991 | 1.47E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene06371 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene06371 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene06371 | 0.836678 | 8.13E-57 | -1.69E-46 |
| MS.gene051243 | MS.gene06371 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene06371 | 0.842442 | 2.58E-58 | -1.69E-46 |
| MS.gene05134 | MS.gene06371 | 0.863392 | 2.57E-64 | -1.69E-46 |
| MS.gene052133 | MS.gene06371 | 0.811745 | 6.00E-51 | -1.69E-46 |
| MS.gene052879 | MS.gene06371 | 0.829858 | 4.07E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene06371 | 0.824761 | 6.77E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene06371 | 0.833524 | 5.08E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene06371 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene06371 | 0.815891 | 7.33E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene06371 | 0.808327 | 3.27E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene06371 | 0.807194 | 5.69E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene06371 | 0.802472 | 5.52E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene06371 | 0.830936 | 2.22E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene06371 | 0.838495 | 2.78E-57 | -1.69E-46 |
| MS.gene055912 | MS.gene06371 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene06371 | 0.826748 | 2.29E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene06371 | 0.833825 | 4.27E-56 | -1.69E-46 |
| MS.gene057060 | MS.gene06371 | 0.809388 | 1.94E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene06371 | 0.819617 | 1.06E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene06371 | 0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene06371 | 0.822956 | 1.80E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene06371 | 0.884817 | 1.39E-71 | -1.69E-46 |
| MS.gene05954 | MS.gene06371 | 0.829484 | 5.02E-55 | -1.69E-46 |
| MS.gene05978 | MS.gene06371 | 0.832869 | 7.39E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene06371 | 0.812476 | 4.16E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene06371 | 0.854512 | 1.17E-61 | -1.69E-46 |
| MS.gene060587 | MS.gene06371 | 0.809147 | 2.18E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene06371 | 0.816153 | 6.40E-52 | -1.69E-46 |
| MS.gene061176 | MS.gene06371 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene06371 | 0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene06371 | 0.804516 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06371 | MS.gene71947 | PPI |
| MS.gene011532 | MS.gene06371 | PPI |
| MS.gene62900 | MS.gene06371 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06371.t1 | MTR_3g096690 | 95.327 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 8.42e-72 | 209 |
| MS.gene06371.t1 | MTR_8g099650 | 50.704 | 71 | 34 | 1 | 37 | 106 | 95 | 165 | 2.66e-19 | 78.2 |
| MS.gene06371.t1 | MTR_8g445550 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene06371.t1 | MTR_8g445560 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene06371.t1 | MTR_0021s0240 | 34.737 | 95 | 58 | 1 | 13 | 103 | 62 | 156 | 4.39e-13 | 62.0 |
| MS.gene06371.t1 | MTR_8g099650 | 56.522 | 46 | 19 | 1 | 37 | 81 | 95 | 140 | 1.34e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06371.t1 | AT5G09250 | 53.774 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 1.38e-36 | 120 |
| MS.gene06371.t1 | AT5G09250 | 56.322 | 87 | 36 | 1 | 4 | 88 | 2 | 88 | 1.15e-29 | 103 |
| MS.gene06371.t1 | AT5G09250 | 60.606 | 66 | 26 | 0 | 42 | 107 | 45 | 110 | 1.02e-26 | 95.5 |
| MS.gene06371.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene06371.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene06371.t1 | AT5G09240 | 49.057 | 106 | 47 | 4 | 7 | 107 | 5 | 108 | 2.94e-25 | 91.7 |
| MS.gene06371.t1 | AT5G09240 | 38.806 | 134 | 47 | 5 | 7 | 107 | 5 | 136 | 2.83e-19 | 77.4 |
| MS.gene06371.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene06371.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene06371.t1 | AT5G09240 | 40.659 | 91 | 47 | 4 | 7 | 92 | 5 | 93 | 1.02e-14 | 65.1 |
Find 27 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAACTGCTTGCCATCTT+TGG | 0.270224 | 3.1:-77105289 | None:intergenic |
| ATCTTCGGTGTCTTTCTTGA+CGG | 0.374479 | 3.1:-77105057 | None:intergenic |
| TTCGAGAAAATGTCTGGAAC+TGG | 0.399428 | 3.1:+77104960 | None:intergenic |
| TGCAGTCAAGGAGAAATCTT+AGG | 0.405151 | 3.1:+77106678 | MS.gene06371:CDS |
| GGACCTGGAATAAACAGCTT+TGG | 0.407824 | 3.1:+77105244 | MS.gene06371:CDS |
| CTCTGGTGACATCGTCTTTG+AGG | 0.410093 | 3.1:+77105082 | MS.gene06371:CDS |
| GACCTGGAATAAACAGCTTT+GGG | 0.423013 | 3.1:+77105245 | MS.gene06371:CDS |
| GACCCAAAGCTGTTTATTCC+AGG | 0.428597 | 3.1:-77105247 | None:intergenic |
| TCACACAGATTGGGAAGAAC+AGG | 0.436451 | 3.1:+77105208 | MS.gene06371:intron |
| AAAATGTCTGGAACTGGAAA+GGG | 0.461735 | 3.1:+77104966 | None:intergenic |
| AAAGATGGCAAGCAGTTGCC+TGG | 0.493882 | 3.1:+77105291 | MS.gene06371:CDS |
| TTCAGGTATCTCACTGAACA+TGG | 0.517623 | 3.1:+77106456 | MS.gene06371:intron |
| GGAGGGTTTCCGTCAGGACC+TGG | 0.520075 | 3.1:+77105229 | MS.gene06371:CDS |
| AGAACAGGAGGGTTTCCGTC+AGG | 0.528840 | 3.1:+77105223 | MS.gene06371:CDS |
| TATCTCACTGAACATGGAAC+AGG | 0.529561 | 3.1:+77106462 | MS.gene06371:CDS |
| CTGTTTATTCCAGGTCCTGA+CGG | 0.540066 | 3.1:-77105238 | None:intergenic |
| GAACTGGAAAGGGGAAGAAG+AGG | 0.541717 | 3.1:+77104976 | MS.gene06371:CDS |
| GAAAATGTCTGGAACTGGAA+AGG | 0.556354 | 3.1:+77104965 | None:intergenic |
| AGAAATTGACAATGCAGTCA+AGG | 0.563704 | 3.1:+77106666 | MS.gene06371:CDS |
| CACAGATTGGGAAGAACAGG+AGG | 0.580072 | 3.1:+77105211 | MS.gene06371:intron |
| AACTGGAAAGGGGAAGAAGA+GGG | 0.582966 | 3.1:+77104977 | MS.gene06371:CDS |
| GATGTCACCAGAGTCATCTT+CGG | 0.584157 | 3.1:-77105072 | None:intergenic |
| AAAGACACCGAAGATGACTC+TGG | 0.589702 | 3.1:+77105065 | MS.gene06371:CDS |
| CAGTGTCGTCGTCGGAAGCG+TGG | 0.607696 | 3.1:-77105010 | None:intergenic |
| GTGAGATTCAGTGTCGTCGT+CGG | 0.626224 | 3.1:-77105018 | None:intergenic |
| AAATGTCTGGAACTGGAAAG+GGG | 0.652792 | 3.1:+77104967 | None:intergenic |
| ACAGATTGGGAAGAACAGGA+GGG | 0.709677 | 3.1:+77105212 | MS.gene06371:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCCATAAAATTGAAT+TGG | - | chr3.1:77106176-77106195 | None:intergenic | 15.0% |
| !! | ACAATTAATCAATGAATAAT+TGG | - | chr3.1:77106595-77106614 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTATGGAAATTT+TGG | + | chr3.1:77106176-77106195 | MS.gene06371:intron | 15.0% |
| !!! | TGTTTATGAAATCTTTTAAT+GGG | + | chr3.1:77105378-77105397 | MS.gene06371:intron | 15.0% |
| !!! | TTGTTTATGAAATCTTTTAA+TGG | + | chr3.1:77105377-77105396 | MS.gene06371:intron | 15.0% |
| !!! | TTTCATAATGAGATTTTATT+AGG | + | chr3.1:77105938-77105957 | MS.gene06371:intron | 15.0% |
| !! | ATCTATTCAGATAACAAATT+AGG | - | chr3.1:77105458-77105477 | None:intergenic | 20.0% |
| !! | CAAAATTGATAAACAAAATC+AGG | - | chr3.1:77106143-77106162 | None:intergenic | 20.0% |
| !! | TTATTTGCAAACATTTAAGT+TGG | + | chr3.1:77106044-77106063 | MS.gene06371:intron | 20.0% |
| !!! | TATTTGCAAACATTTAAGTT+GGG | + | chr3.1:77106045-77106064 | MS.gene06371:intron | 20.0% |
| !!! | TTTTTTGTTCTTGAAATCTA+GGG | + | chr3.1:77105144-77105163 | MS.gene06371:intron | 20.0% |
| !!! | TTTTTTTGTTCTTGAAATCT+AGG | + | chr3.1:77105143-77105162 | MS.gene06371:intron | 20.0% |
| ! | AAAACATAAGTTATCTTGCT+TGG | + | chr3.1:77106380-77106399 | MS.gene06371:intron | 25.0% |
| ! | AAAGATTTCATAAACAACGA+AGG | - | chr3.1:77105374-77105393 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAACCCTAGTAA+TGG | - | chr3.1:77105132-77105151 | None:intergenic | 25.0% |
| ! | AGATTCTTGAAATGTTGAAT+AGG | + | chr3.1:77105474-77105493 | MS.gene06371:intron | 25.0% |
| ! | TATTCATGTTTCAGATTTGT+TGG | + | chr3.1:77106537-77106556 | MS.gene06371:intron | 25.0% |
| !! | ATCTGAAACATGAATAGAAA+AGG | - | chr3.1:77106533-77106552 | None:intergenic | 25.0% |
| !! | TTGTCTCCAATTCAATTTTA+TGG | + | chr3.1:77106167-77106186 | MS.gene06371:intron | 25.0% |
| !!! | ACATTTGTTTACTTGTTTTC+AGG | + | chr3.1:77106439-77106458 | MS.gene06371:intron | 25.0% |
| !!! | GATTAGGTTTTGAAATAGAA+TGG | + | chr3.1:77105414-77105433 | MS.gene06371:intron | 25.0% |
| !!! | TTGATTCTTTTGATTGAAAG+TGG | + | chr3.1:77105878-77105897 | MS.gene06371:intron | 25.0% |
| AAATCACCAATTGAATTCAC+TGG | - | chr3.1:77105797-77105816 | None:intergenic | 30.0% | |
| AACATGTTAGAGTATGTTGA+AGG | - | chr3.1:77105563-77105582 | None:intergenic | 30.0% | |
| GAAATGTTGAATAGGATCAT+AGG | + | chr3.1:77105482-77105501 | MS.gene06371:intron | 30.0% | |
| GAAATTCAAAATCCTAGTGA+TGG | + | chr3.1:77106229-77106248 | MS.gene06371:intron | 30.0% | |
| GCAGTTTGTGAGAAAAATAT+AGG | + | chr3.1:77105981-77106000 | MS.gene06371:intron | 30.0% | |
| GTTGAAAATACTGTAGTTGT+TGG | + | chr3.1:77106092-77106111 | MS.gene06371:intron | 30.0% | |
| TTAATCAAGTGAATGGACAT+TGG | + | chr3.1:77106116-77106135 | MS.gene06371:intron | 30.0% | |
| TTGCTGATAATTAAGTTCAC+AGG | - | chr3.1:77105852-77105871 | None:intergenic | 30.0% | |
| ! | CAGGTCTAGAATATAAGATT+TGG | + | chr3.1:77106568-77106587 | MS.gene06371:intron | 30.0% |
| ! | GAAAGTTTGGAAGTAGTTTT+AGG | + | chr3.1:77106067-77106086 | MS.gene06371:intron | 30.0% |
| ! | GGGTTATTTGCTTATTGATT+AGG | + | chr3.1:77105398-77105417 | MS.gene06371:intron | 30.0% |
| ! | TTCGTGAACTACATTTGTTT+TGG | + | chr3.1:77106287-77106306 | MS.gene06371:intron | 30.0% |
| !! | AAAGGTTTTTAAGAGAAGCT+TGG | + | chr3.1:77106253-77106272 | MS.gene06371:intron | 30.0% |
| !! | ACATTTAAGTTGGGAAAGTT+TGG | + | chr3.1:77106054-77106073 | MS.gene06371:intron | 30.0% |
| !! | ATTCTTTTGATTGAAAGTGG+TGG | + | chr3.1:77105881-77105900 | MS.gene06371:intron | 30.0% |
| !! | TGTTGGTTTAATCAAGTGAA+TGG | + | chr3.1:77106109-77106128 | MS.gene06371:intron | 30.0% |
| !!! | ATCTGCTATACCATTTTTTG+GGG | + | chr3.1:77105663-77105682 | MS.gene06371:intron | 30.0% |
| !!! | CATCTGCTATACCATTTTTT+GGG | + | chr3.1:77105662-77105681 | MS.gene06371:intron | 30.0% |
| !!! | TCTTTCTTGACGGTTTTTTT+GGG | - | chr3.1:77105050-77105069 | None:intergenic | 30.0% |
| ACATAAGTTATCTTGCTTGG+TGG | + | chr3.1:77106383-77106402 | MS.gene06371:intron | 35.0% | |
| AGAAATTGACAATGCAGTCA+AGG | + | chr3.1:77106666-77106685 | MS.gene06371:CDS | 35.0% | |
| ATAAGACAGCAATCAAGGTT+TGG | - | chr3.1:77106355-77106374 | None:intergenic | 35.0% | |
| CAACAATAAGACAGCAATCA+AGG | - | chr3.1:77106360-77106379 | None:intergenic | 35.0% | |
| CACAGATTCATGACAAAATG+AGG | - | chr3.1:77105340-77105359 | None:intergenic | 35.0% | |
| CCAAAAAATGGTATAGCAGA+TGG | - | chr3.1:77105664-77105683 | None:intergenic | 35.0% | |
| GATTTCGTTTCACACAGATT+GGG | + | chr3.1:77105199-77105218 | MS.gene06371:intron | 35.0% | |
| TAAAAACCTTTGCCATCACT+AGG | - | chr3.1:77106244-77106263 | None:intergenic | 35.0% | |
| TGATTTCGTTTCACACAGAT+TGG | + | chr3.1:77105198-77105217 | MS.gene06371:intron | 35.0% | |
| TTGTCATGAATCTGTGAAGA+TGG | + | chr3.1:77105344-77105363 | MS.gene06371:intron | 35.0% | |
| ! | AAAAACCCTAGTAATGGAGT+TGG | - | chr3.1:77105126-77105145 | None:intergenic | 35.0% |
| ! | AAAACCCTAGTAATGGAGTT+GGG | - | chr3.1:77105125-77105144 | None:intergenic | 35.0% |
| ! | AATCAAGGTTTGGTAGGAAA+GGG | - | chr3.1:77106345-77106364 | None:intergenic | 35.0% |
| ! | CGCGAATTTTATACCAAAGA+TGG | + | chr3.1:77105276-77105295 | MS.gene06371:CDS | 35.0% |
| ! | GCAATCGTGTTAAGTTGTAT+TGG | + | chr3.1:77105818-77105837 | MS.gene06371:intron | 35.0% |
| !! | CATGTTTCAGATTTGTTGGT+CGG | + | chr3.1:77106541-77106560 | MS.gene06371:intron | 35.0% |
| !!! | CCATCTGCTATACCATTTTT+TGG | + | chr3.1:77105661-77105680 | MS.gene06371:intron | 35.0% |
| !!! | GTCTTTCTTGACGGTTTTTT+TGG | - | chr3.1:77105051-77105070 | None:intergenic | 35.0% |
| AAGAGAAGCTTGGAGTATGT+TGG | + | chr3.1:77106263-77106282 | MS.gene06371:intron | 40.0% | |
| ATCAGCACACACAGTACAAA+TGG | - | chr3.1:77105761-77105780 | None:intergenic | 40.0% | |
| ATCGACAACATAGGTAGTAG+TGG | + | chr3.1:77105711-77105730 | MS.gene06371:intron | 40.0% | |
| ATGTTGTCGATCTCAGATAG+TGG | - | chr3.1:77105702-77105721 | None:intergenic | 40.0% | |
| CAAAATCCTAGTGATGGCAA+AGG | + | chr3.1:77106235-77106254 | MS.gene06371:intron | 40.0% | |
| GACCTGGAATAAACAGCTTT+GGG | + | chr3.1:77105245-77105264 | MS.gene06371:CDS | 40.0% | |
| GTAGGAAAGGGAAAGGAAAA+GGG | - | chr3.1:77106333-77106352 | None:intergenic | 40.0% | |
| GTGTTGCCAGTGAATTCAAT+TGG | + | chr3.1:77105788-77105807 | MS.gene06371:intron | 40.0% | |
| TAACGAGTTCCGACATAAGT+TGG | - | chr3.1:77105907-77105926 | None:intergenic | 40.0% | |
| TATCTCACTGAACATGGAAC+AGG | + | chr3.1:77106462-77106481 | MS.gene06371:CDS | 40.0% | |
| TTCAGGTATCTCACTGAACA+TGG | + | chr3.1:77106456-77106475 | MS.gene06371:intron | 40.0% | |
| ! | AAACCCTAGTAATGGAGTTG+GGG | - | chr3.1:77105124-77105143 | None:intergenic | 40.0% |
| ! | AATGGAGTTGGGGGTTTTTA+AGG | - | chr3.1:77105114-77105133 | None:intergenic | 40.0% |
| ! | AGTGGTGCATGATTTTCTCA+GGG | + | chr3.1:77105729-77105748 | MS.gene06371:intron | 40.0% |
| ! | CAATCAAGGTTTGGTAGGAA+AGG | - | chr3.1:77106346-77106365 | None:intergenic | 40.0% |
| ! | CTATCTGAGATCGACAACAT+AGG | + | chr3.1:77105702-77105721 | MS.gene06371:intron | 40.0% |
| ! | TAAGTTATCTTGCTTGGTGG+TGG | + | chr3.1:77106386-77106405 | MS.gene06371:intron | 40.0% |
| ! | TAGTGGTGCATGATTTTCTC+AGG | + | chr3.1:77105728-77105747 | MS.gene06371:intron | 40.0% |
| ! | TTGCCTGGCAAAAAAGGTAT+CGG | + | chr3.1:77105306-77105325 | MS.gene06371:intron | 40.0% |
| !! | ATCTTCGGTGTCTTTCTTGA+CGG | - | chr3.1:77105060-77105079 | None:intergenic | 40.0% |
| !!! | AATCCGATACCTTTTTTGCC+AGG | - | chr3.1:77105312-77105331 | None:intergenic | 40.0% |
| !!! | GCTATACCATTTTTTGGGGT+TGG | + | chr3.1:77105667-77105686 | MS.gene06371:intron | 40.0% |
| !!! | TTCTTGACGGTTTTTTTGGG+AGG | - | chr3.1:77105047-77105066 | None:intergenic | 40.0% |
| AAACCCCCAACTCCATTACT+AGG | + | chr3.1:77105117-77105136 | MS.gene06371:intron | 45.0% | |
| AAAGACACCGAAGATGACTC+TGG | + | chr3.1:77105065-77105084 | MS.gene06371:CDS | 45.0% | |
| AACCCCCAACTCCATTACTA+GGG | + | chr3.1:77105118-77105137 | MS.gene06371:intron | 45.0% | |
| AACTGGAAAGGGGAAGAAGA+GGG | + | chr3.1:77104977-77104996 | MS.gene06371:CDS | 45.0% | |
| AAGCAGTTGCCTGGCAAAAA+AGG | + | chr3.1:77105300-77105319 | MS.gene06371:CDS | 45.0% | |
| AAGTGGTGGCCAACTTATGT+CGG | + | chr3.1:77105895-77105914 | MS.gene06371:intron | 45.0% | |
| ACAGATTGGGAAGAACAGGA+GGG | + | chr3.1:77105212-77105231 | MS.gene06371:intron | 45.0% | |
| AGAAATGCCACTACTCTCGA+AGG | - | chr3.1:77105640-77105659 | None:intergenic | 45.0% | |
| CTGTTTATTCCAGGTCCTGA+CGG | - | chr3.1:77105241-77105260 | None:intergenic | 45.0% | |
| GACCCAAAGCTGTTTATTCC+AGG | - | chr3.1:77105250-77105269 | None:intergenic | 45.0% | |
| GATGTCACCAGAGTCATCTT+CGG | - | chr3.1:77105075-77105094 | None:intergenic | 45.0% | |
| GGACCTGGAATAAACAGCTT+TGG | + | chr3.1:77105244-77105263 | MS.gene06371:CDS | 45.0% | |
| GGTAGGAAAGGGAAAGGAAA+AGG | - | chr3.1:77106334-77106353 | None:intergenic | 45.0% | |
| GTAGCACCAACCCCAAAAAA+TGG | - | chr3.1:77105676-77105695 | None:intergenic | 45.0% | |
| TCACACAGATTGGGAAGAAC+AGG | + | chr3.1:77105208-77105227 | MS.gene06371:intron | 45.0% | |
| TCTTTCTCTTGTGTGTGCAG+TGG | + | chr3.1:77106620-77106639 | MS.gene06371:intron | 45.0% | |
| ! | AACCCTAGTAATGGAGTTGG+GGG | - | chr3.1:77105123-77105142 | None:intergenic | 45.0% |
| ! | AGGTTTGGTAGGAAAGGGAA+AGG | - | chr3.1:77106340-77106359 | None:intergenic | 45.0% |
| ! | GACAGCAATCAAGGTTTGGT+AGG | - | chr3.1:77106351-77106370 | None:intergenic | 45.0% |
| !! | AGATTTGTTGGTCGGTCAAC+AGG | + | chr3.1:77106549-77106568 | MS.gene06371:intron | 45.0% |
| AAAGATGGCAAGCAGTTGCC+TGG | + | chr3.1:77105291-77105310 | MS.gene06371:CDS | 50.0% | |
| AGGCAACTGCTTGCCATCTT+TGG | - | chr3.1:77105292-77105311 | None:intergenic | 50.0% | |
| CACAGATTGGGAAGAACAGG+AGG | + | chr3.1:77105211-77105230 | MS.gene06371:intron | 50.0% | |
| CTCTGGTGACATCGTCTTTG+AGG | + | chr3.1:77105082-77105101 | MS.gene06371:CDS | 50.0% | |
| GAACTGGAAAGGGGAAGAAG+AGG | + | chr3.1:77104976-77104995 | MS.gene06371:CDS | 50.0% | |
| GTGAGATTCAGTGTCGTCGT+CGG | - | chr3.1:77105021-77105040 | None:intergenic | 50.0% | |
| !! | GGTGACATCGTCTTTGAGGT+AGG | + | chr3.1:77105086-77105105 | MS.gene06371:intron | 50.0% |
| AGAACAGGAGGGTTTCCGTC+AGG | + | chr3.1:77105223-77105242 | MS.gene06371:CDS | 55.0% | |
| AGCGTGACCTTCGAGAGTAG+TGG | + | chr3.1:77105630-77105649 | MS.gene06371:intron | 55.0% | |
| CAGTGTCGTCGTCGGAAGCG+TGG | - | chr3.1:77105013-77105032 | None:intergenic | 65.0% | |
| GGAGGGTTTCCGTCAGGACC+TGG | + | chr3.1:77105229-77105248 | MS.gene06371:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77104969 | 77106699 | 77104969 | ID=MS.gene06371 |
| chr3.1 | mRNA | 77104969 | 77106699 | 77104969 | ID=MS.gene06371.t1;Parent=MS.gene06371 |
| chr3.1 | exon | 77104969 | 77105103 | 77104969 | ID=MS.gene06371.t1.exon1;Parent=MS.gene06371.t1 |
| chr3.1 | CDS | 77104969 | 77105103 | 77104969 | ID=cds.MS.gene06371.t1;Parent=MS.gene06371.t1 |
| chr3.1 | exon | 77105216 | 77105321 | 77105216 | ID=MS.gene06371.t1.exon2;Parent=MS.gene06371.t1 |
| chr3.1 | CDS | 77105216 | 77105321 | 77105216 | ID=cds.MS.gene06371.t1;Parent=MS.gene06371.t1 |
| chr3.1 | exon | 77106461 | 77106483 | 77106461 | ID=MS.gene06371.t1.exon3;Parent=MS.gene06371.t1 |
| chr3.1 | CDS | 77106461 | 77106483 | 77106461 | ID=cds.MS.gene06371.t1;Parent=MS.gene06371.t1 |
| chr3.1 | exon | 77106640 | 77106699 | 77106640 | ID=MS.gene06371.t1.exon4;Parent=MS.gene06371.t1 |
| chr3.1 | CDS | 77106640 | 77106699 | 77106640 | ID=cds.MS.gene06371.t1;Parent=MS.gene06371.t1 |
| Gene Sequence |
| Protein sequence |
