Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013288.t1 | XP_024633775.1 | 95.3 | 107 | 5 | 0 | 1 | 107 | 35 | 141 | 2.60E-51 | 211.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013288.t1 | O65154 | 53.8 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 3.8e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013288.t1 | G7JC59 | 95.3 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 1.9e-51 | 211.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013288 | MS.gene71947 | PPI |
| MS.gene011532 | MS.gene013288 | PPI |
| MS.gene62900 | MS.gene013288 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013288.t1 | MTR_3g096690 | 95.327 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 8.42e-72 | 209 |
| MS.gene013288.t1 | MTR_8g099650 | 50.704 | 71 | 34 | 1 | 37 | 106 | 95 | 165 | 2.66e-19 | 78.2 |
| MS.gene013288.t1 | MTR_8g445550 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene013288.t1 | MTR_8g445560 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene013288.t1 | MTR_0021s0240 | 34.737 | 95 | 58 | 1 | 13 | 103 | 62 | 156 | 4.39e-13 | 62.0 |
| MS.gene013288.t1 | MTR_8g099650 | 56.522 | 46 | 19 | 1 | 37 | 81 | 95 | 140 | 1.34e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013288.t1 | AT5G09250 | 53.774 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 1.38e-36 | 120 |
| MS.gene013288.t1 | AT5G09250 | 56.322 | 87 | 36 | 1 | 4 | 88 | 2 | 88 | 1.15e-29 | 103 |
| MS.gene013288.t1 | AT5G09250 | 60.606 | 66 | 26 | 0 | 42 | 107 | 45 | 110 | 1.02e-26 | 95.5 |
| MS.gene013288.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene013288.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene013288.t1 | AT5G09240 | 49.057 | 106 | 47 | 4 | 7 | 107 | 5 | 108 | 2.94e-25 | 91.7 |
| MS.gene013288.t1 | AT5G09240 | 38.806 | 134 | 47 | 5 | 7 | 107 | 5 | 136 | 2.83e-19 | 77.4 |
| MS.gene013288.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene013288.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene013288.t1 | AT5G09240 | 40.659 | 91 | 47 | 4 | 7 | 92 | 5 | 93 | 1.02e-14 | 65.1 |
Find 27 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAACTGCTTGCCATCTT+TGG | 0.270224 | 3.4:-87486995 | None:intergenic |
| ATCTTCGGTGTCTTTCTTGA+CGG | 0.374479 | 3.4:-87486764 | None:intergenic |
| TTCGAGAAAATGTCTGGAAC+TGG | 0.399428 | 3.4:+87486667 | None:intergenic |
| TGCAGTCAAGGAGAAATCTT+AGG | 0.405151 | 3.4:+87488371 | MS.gene013288:CDS |
| GGACCTGGAATAAACAGCTT+TGG | 0.407824 | 3.4:+87486950 | MS.gene013288:CDS |
| CTCTGGTGACATCGTCTTTG+AGG | 0.410093 | 3.4:+87486789 | MS.gene013288:CDS |
| GACCTGGAATAAACAGCTTT+GGG | 0.423013 | 3.4:+87486951 | MS.gene013288:CDS |
| GACCCAAAGCTGTTTATTCC+AGG | 0.428597 | 3.4:-87486953 | None:intergenic |
| TCACACAGATTGGGAAGAAC+AGG | 0.436451 | 3.4:+87486914 | MS.gene013288:intron |
| AAAATGTCTGGAACTGGAAA+GGG | 0.461735 | 3.4:+87486673 | None:intergenic |
| AAAGATGGCAAGCAGTTGCC+TGG | 0.493882 | 3.4:+87486997 | MS.gene013288:CDS |
| GGAGGGTTTCCGTCAGGACC+TGG | 0.520075 | 3.4:+87486935 | MS.gene013288:CDS |
| AGAACAGGAGGGTTTCCGTC+AGG | 0.528840 | 3.4:+87486929 | MS.gene013288:CDS |
| TATCTCACTGAACATGGAAC+AGG | 0.529561 | 3.4:+87488172 | MS.gene013288:CDS |
| CTGTTTATTCCAGGTCCTGA+CGG | 0.540066 | 3.4:-87486944 | None:intergenic |
| GAACTGGAAAGGGGAAGAAG+AGG | 0.541717 | 3.4:+87486683 | MS.gene013288:CDS |
| TACAGGTATCTCACTGAACA+TGG | 0.547966 | 3.4:+87488166 | MS.gene013288:intron |
| GAAAATGTCTGGAACTGGAA+AGG | 0.556354 | 3.4:+87486672 | None:intergenic |
| AGAAATTGACAATGCAGTCA+AGG | 0.563704 | 3.4:+87488359 | MS.gene013288:CDS |
| CACAGATTGGGAAGAACAGG+AGG | 0.580072 | 3.4:+87486917 | MS.gene013288:intron |
| AACTGGAAAGGGGAAGAAGA+GGG | 0.582966 | 3.4:+87486684 | MS.gene013288:CDS |
| GATGTCACCAGAGTCATCTT+CGG | 0.584157 | 3.4:-87486779 | None:intergenic |
| AAAGACACCGAAGATGACTC+TGG | 0.589702 | 3.4:+87486772 | MS.gene013288:CDS |
| CAGTGTCGTCGTCGGAAGCG+TGG | 0.607696 | 3.4:-87486717 | None:intergenic |
| GTGTGATTCAGTGTCGTCGT+CGG | 0.610940 | 3.4:-87486725 | None:intergenic |
| AAATGTCTGGAACTGGAAAG+GGG | 0.652792 | 3.4:+87486674 | None:intergenic |
| ACAGATTGGGAAGAACAGGA+GGG | 0.709677 | 3.4:+87486918 | MS.gene013288:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCCATAAAATTGAAT+TGG | - | chr3.4:87487882-87487901 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTATGGAAATTT+TGG | + | chr3.4:87487882-87487901 | MS.gene013288:intron | 15.0% |
| !!! | TGTTTATGAAATCTTTTAAT+GGG | + | chr3.4:87487084-87487103 | MS.gene013288:intron | 15.0% |
| !!! | TTGTTTATGAAATCTTTTAA+TGG | + | chr3.4:87487083-87487102 | MS.gene013288:intron | 15.0% |
| !!! | TTTCATAATGAGATTTTATT+AGG | + | chr3.4:87487644-87487663 | MS.gene013288:intron | 15.0% |
| !! | AAAGATTTCATAAACAAAGA+AGG | - | chr3.4:87487080-87487099 | None:intergenic | 20.0% |
| !! | ATCTATTCAGATAACAAATT+AGG | - | chr3.4:87487164-87487183 | None:intergenic | 20.0% |
| !! | CAAAATTGATAAACAAAATC+AGG | - | chr3.4:87487849-87487868 | None:intergenic | 20.0% |
| !! | TTATTTGCAAACATTTAAGT+TGG | + | chr3.4:87487750-87487769 | MS.gene013288:intron | 20.0% |
| !!! | TATTTGCAAACATTTAAGTT+GGG | + | chr3.4:87487751-87487770 | MS.gene013288:intron | 20.0% |
| !!! | TTTTCTCCAATTCAATTTTA+TGG | + | chr3.4:87487873-87487892 | MS.gene013288:intron | 20.0% |
| !!! | TTTTTTGTTCTTGAAATCTA+GGG | + | chr3.4:87486850-87486869 | MS.gene013288:intron | 20.0% |
| !!! | TTTTTTTGTTCTTGAAATCT+AGG | + | chr3.4:87486849-87486868 | MS.gene013288:intron | 20.0% |
| ! | AAAACATAAGTTATCTTGCT+TGG | + | chr3.4:87488092-87488111 | MS.gene013288:intron | 25.0% |
| ! | AACAAAAAAAACCCTAGTAA+TGG | - | chr3.4:87486839-87486858 | None:intergenic | 25.0% |
| ! | AGATTCTTGAAATGATGAAT+AGG | + | chr3.4:87487180-87487199 | MS.gene013288:intron | 25.0% |
| ! | TATTCATGTTTCAGATTTGT+TGG | + | chr3.4:87488247-87488266 | MS.gene013288:intron | 25.0% |
| !! | ATCTGAAACATGAATAGAAA+AGG | - | chr3.4:87488243-87488262 | None:intergenic | 25.0% |
| !!! | GATTAGGTTTTGAAATAGAA+TGG | + | chr3.4:87487120-87487139 | MS.gene013288:intron | 25.0% |
| !!! | TTGATTCTTTTGATTGAAAG+TGG | + | chr3.4:87487584-87487603 | MS.gene013288:intron | 25.0% |
| AAATCACCAATTGAATTCAC+TGG | - | chr3.4:87487503-87487522 | None:intergenic | 30.0% | |
| AACATGTTAGAGTATGTTGA+AGG | - | chr3.4:87487269-87487288 | None:intergenic | 30.0% | |
| ATGTTATCGATCTCAGATAA+TGG | - | chr3.4:87487408-87487427 | None:intergenic | 30.0% | |
| GAAATGATGAATAGGATCAT+AGG | + | chr3.4:87487188-87487207 | MS.gene013288:intron | 30.0% | |
| GCAGTTTGTGAGAAAAATAT+AGG | + | chr3.4:87487687-87487706 | MS.gene013288:intron | 30.0% | |
| GTTGAAAATACTGTAGTTGT+TGG | + | chr3.4:87487798-87487817 | MS.gene013288:intron | 30.0% | |
| TGACATTTGTTTACTTGTAC+AGG | + | chr3.4:87488149-87488168 | MS.gene013288:intron | 30.0% | |
| TTAATCAAGTGAATGGACAA+AGG | + | chr3.4:87487822-87487841 | MS.gene013288:intron | 30.0% | |
| TTGCTGATAATTAAGTTCAC+AGG | - | chr3.4:87487558-87487577 | None:intergenic | 30.0% | |
| ! | GGGTTATTTGCTTATTGATT+AGG | + | chr3.4:87487104-87487123 | MS.gene013288:intron | 30.0% |
| ! | TTATCTGAGATCGATAACAT+AGG | + | chr3.4:87487408-87487427 | MS.gene013288:intron | 30.0% |
| ! | TTCGTGAACTACATTTGTTT+TGG | + | chr3.4:87487993-87488012 | MS.gene013288:intron | 30.0% |
| !! | AAAGGTTTTTAAGAGAAGCT+TGG | + | chr3.4:87487959-87487978 | MS.gene013288:intron | 30.0% |
| !! | ATTCTTTTGATTGAAAGTGG+TGG | + | chr3.4:87487587-87487606 | MS.gene013288:intron | 30.0% |
| !! | TGTTGGTTTAATCAAGTGAA+TGG | + | chr3.4:87487815-87487834 | MS.gene013288:intron | 30.0% |
| !!! | ATCTGCTATACCATTTTTTG+GGG | + | chr3.4:87487369-87487388 | MS.gene013288:intron | 30.0% |
| !!! | CATCTGCTATACCATTTTTT+GGG | + | chr3.4:87487368-87487387 | MS.gene013288:intron | 30.0% |
| !!! | TCTTTCTTGACGGTTTTTTT+GGG | - | chr3.4:87486757-87486776 | None:intergenic | 30.0% |
| ACATAAGTTATCTTGCTTGG+TGG | + | chr3.4:87488095-87488114 | MS.gene013288:intron | 35.0% | |
| AGAAATTGACAATGCAGTCA+AGG | + | chr3.4:87488359-87488378 | MS.gene013288:CDS | 35.0% | |
| ATAAGACAGCAATCAAGGTT+TGG | - | chr3.4:87488067-87488086 | None:intergenic | 35.0% | |
| ATCGATAACATAGGTAGTAG+TGG | + | chr3.4:87487417-87487436 | MS.gene013288:intron | 35.0% | |
| CAACAATAAGACAGCAATCA+AGG | - | chr3.4:87488072-87488091 | None:intergenic | 35.0% | |
| CACAGATTCATGACAAAATG+AGG | - | chr3.4:87487046-87487065 | None:intergenic | 35.0% | |
| CCAAAAAATGGTATAGCAGA+TGG | - | chr3.4:87487370-87487389 | None:intergenic | 35.0% | |
| GAAATTCAAACTCCTAGTGA+TGG | + | chr3.4:87487935-87487954 | MS.gene013288:intron | 35.0% | |
| GATTTCGTTTCACACAGATT+GGG | + | chr3.4:87486905-87486924 | MS.gene013288:intron | 35.0% | |
| TAAAAACCTTTGCCATCACT+AGG | - | chr3.4:87487950-87487969 | None:intergenic | 35.0% | |
| TGATTTCGTTTCACACAGAT+TGG | + | chr3.4:87486904-87486923 | MS.gene013288:intron | 35.0% | |
| TTGTCATGAATCTGTGAAGA+TGG | + | chr3.4:87487050-87487069 | MS.gene013288:intron | 35.0% | |
| ! | AAAAACCCTAGTAATGGAGT+TGG | - | chr3.4:87486833-87486852 | None:intergenic | 35.0% |
| ! | AAAACCCTAGTAATGGAGTT+GGG | - | chr3.4:87486832-87486851 | None:intergenic | 35.0% |
| ! | AATCAAGGTTTGGTAGGAAA+GGG | - | chr3.4:87488057-87488076 | None:intergenic | 35.0% |
| ! | CGCGAATTTTATACCAAAGA+TGG | + | chr3.4:87486982-87487001 | MS.gene013288:CDS | 35.0% |
| ! | GAACGTTTGGAAGTAGTTTT+AGG | + | chr3.4:87487773-87487792 | MS.gene013288:intron | 35.0% |
| ! | GCAATCGTGTTAAGTTGTAT+TGG | + | chr3.4:87487524-87487543 | MS.gene013288:intron | 35.0% |
| !! | ACATTTAAGTTGGGAACGTT+TGG | + | chr3.4:87487760-87487779 | MS.gene013288:intron | 35.0% |
| !! | CATGTTTCAGATTTGTTGGT+CGG | + | chr3.4:87488251-87488270 | MS.gene013288:intron | 35.0% |
| !!! | CCATCTGCTATACCATTTTT+TGG | + | chr3.4:87487367-87487386 | MS.gene013288:intron | 35.0% |
| !!! | GTCTTTCTTGACGGTTTTTT+TGG | - | chr3.4:87486758-87486777 | None:intergenic | 35.0% |
| AAGAGAAGCTTGGAGTATGT+TGG | + | chr3.4:87487969-87487988 | MS.gene013288:intron | 40.0% | |
| ATCAGCACACACAGTACAAA+TGG | - | chr3.4:87487467-87487486 | None:intergenic | 40.0% | |
| GACCTGGAATAAACAGCTTT+GGG | + | chr3.4:87486951-87486970 | MS.gene013288:CDS | 40.0% | |
| GTGTTGCCAGTGAATTCAAT+TGG | + | chr3.4:87487494-87487513 | MS.gene013288:intron | 40.0% | |
| TAACGAGTTCCGACATAAGT+TGG | - | chr3.4:87487613-87487632 | None:intergenic | 40.0% | |
| TACAGGTATCTCACTGAACA+TGG | + | chr3.4:87488166-87488185 | MS.gene013288:intron | 40.0% | |
| TATCTCACTGAACATGGAAC+AGG | + | chr3.4:87488172-87488191 | MS.gene013288:CDS | 40.0% | |
| ! | AAACCCTAGTAATGGAGTTG+GGG | - | chr3.4:87486831-87486850 | None:intergenic | 40.0% |
| ! | AATGGAGTTGGGGGTTTTTA+AGG | - | chr3.4:87486821-87486840 | None:intergenic | 40.0% |
| ! | AGTGGTGCATGATTTTCTCA+GGG | + | chr3.4:87487435-87487454 | MS.gene013288:intron | 40.0% |
| ! | CAATCAAGGTTTGGTAGGAA+AGG | - | chr3.4:87488058-87488077 | None:intergenic | 40.0% |
| ! | TAAGTTATCTTGCTTGGTGG+TGG | + | chr3.4:87488098-87488117 | MS.gene013288:intron | 40.0% |
| ! | TAGTGGTGCATGATTTTCTC+AGG | + | chr3.4:87487434-87487453 | MS.gene013288:intron | 40.0% |
| ! | TTGCCTGGCAAAAAAGGTAT+CGG | + | chr3.4:87487012-87487031 | MS.gene013288:intron | 40.0% |
| !! | ATCTTCGGTGTCTTTCTTGA+CGG | - | chr3.4:87486767-87486786 | None:intergenic | 40.0% |
| !!! | AATCCGATACCTTTTTTGCC+AGG | - | chr3.4:87487018-87487037 | None:intergenic | 40.0% |
| !!! | GCTATACCATTTTTTGGGGT+TGG | + | chr3.4:87487373-87487392 | MS.gene013288:intron | 40.0% |
| !!! | TTCTTGACGGTTTTTTTGGG+AGG | - | chr3.4:87486754-87486773 | None:intergenic | 40.0% |
| AAACCCCCAACTCCATTACT+AGG | + | chr3.4:87486824-87486843 | MS.gene013288:intron | 45.0% | |
| AAAGACACCGAAGATGACTC+TGG | + | chr3.4:87486772-87486791 | MS.gene013288:CDS | 45.0% | |
| AAAGGGAAAGGGAAAGGGAA+AGG | - | chr3.4:87488034-87488053 | None:intergenic | 45.0% | |
| AACCCCCAACTCCATTACTA+GGG | + | chr3.4:87486825-87486844 | MS.gene013288:intron | 45.0% | |
| AACTGGAAAGGGGAAGAAGA+GGG | + | chr3.4:87486684-87486703 | MS.gene013288:CDS | 45.0% | |
| AAGCAGTTGCCTGGCAAAAA+AGG | + | chr3.4:87487006-87487025 | MS.gene013288:CDS | 45.0% | |
| AAGGGAAAGGGAAAGGGAAA+GGG | - | chr3.4:87488039-87488058 | None:intergenic | 45.0% | |
| AAGTGGTGGCCAACTTATGT+CGG | + | chr3.4:87487601-87487620 | MS.gene013288:intron | 45.0% | |
| ACAGATTGGGAAGAACAGGA+GGG | + | chr3.4:87486918-87486937 | MS.gene013288:intron | 45.0% | |
| AGAAATGCCACTACTCTCGA+AGG | - | chr3.4:87487346-87487365 | None:intergenic | 45.0% | |
| CAAACTCCTAGTGATGGCAA+AGG | + | chr3.4:87487941-87487960 | MS.gene013288:intron | 45.0% | |
| CTGTCAATCACGTGCTATAG+CGG | + | chr3.4:87487310-87487329 | MS.gene013288:intron | 45.0% | |
| CTGTTTATTCCAGGTCCTGA+CGG | - | chr3.4:87486947-87486966 | None:intergenic | 45.0% | |
| GACCCAAAGCTGTTTATTCC+AGG | - | chr3.4:87486956-87486975 | None:intergenic | 45.0% | |
| GATGTCACCAGAGTCATCTT+CGG | - | chr3.4:87486782-87486801 | None:intergenic | 45.0% | |
| GGACCTGGAATAAACAGCTT+TGG | + | chr3.4:87486950-87486969 | MS.gene013288:CDS | 45.0% | |
| GTAGCACCAACCCCAAAAAA+TGG | - | chr3.4:87487382-87487401 | None:intergenic | 45.0% | |
| GTAGGAAAGGGAAAGGGAAA+GGG | - | chr3.4:87488045-87488064 | None:intergenic | 45.0% | |
| TCACACAGATTGGGAAGAAC+AGG | + | chr3.4:87486914-87486933 | MS.gene013288:intron | 45.0% | |
| TCTTTCTCTTGTGTGTGCAG+TGG | + | chr3.4:87488313-87488332 | MS.gene013288:intron | 45.0% | |
| ! | AACCCTAGTAATGGAGTTGG+GGG | - | chr3.4:87486830-87486849 | None:intergenic | 45.0% |
| ! | AGGTTTGGTAGGAAAGGGAA+AGG | - | chr3.4:87488052-87488071 | None:intergenic | 45.0% |
| ! | GACAGCAATCAAGGTTTGGT+AGG | - | chr3.4:87488063-87488082 | None:intergenic | 45.0% |
| ! | GGTTTGGTAGGAAAGGGAAA+GGG | - | chr3.4:87488051-87488070 | None:intergenic | 45.0% |
| !! | AGATTTGTTGGTCGGTCAAC+AGG | + | chr3.4:87488259-87488278 | MS.gene013288:intron | 45.0% |
| AAAGATGGCAAGCAGTTGCC+TGG | + | chr3.4:87486997-87487016 | MS.gene013288:CDS | 50.0% | |
| AGGCAACTGCTTGCCATCTT+TGG | - | chr3.4:87486998-87487017 | None:intergenic | 50.0% | |
| CACAGATTGGGAAGAACAGG+AGG | + | chr3.4:87486917-87486936 | MS.gene013288:intron | 50.0% | |
| CTCTGGTGACATCGTCTTTG+AGG | + | chr3.4:87486789-87486808 | MS.gene013288:CDS | 50.0% | |
| GAACTGGAAAGGGGAAGAAG+AGG | + | chr3.4:87486683-87486702 | MS.gene013288:CDS | 50.0% | |
| GGTAGGAAAGGGAAAGGGAA+AGG | - | chr3.4:87488046-87488065 | None:intergenic | 50.0% | |
| GTGTGATTCAGTGTCGTCGT+CGG | - | chr3.4:87486728-87486747 | None:intergenic | 50.0% | |
| !! | GGTGACATCGTCTTTGAGGT+AGG | + | chr3.4:87486793-87486812 | MS.gene013288:intron | 50.0% |
| AGAACAGGAGGGTTTCCGTC+AGG | + | chr3.4:87486929-87486948 | MS.gene013288:CDS | 55.0% | |
| AGCGTGACCTTCGAGAGTAG+TGG | + | chr3.4:87487336-87487355 | MS.gene013288:intron | 55.0% | |
| CAGTGTCGTCGTCGGAAGCG+TGG | - | chr3.4:87486720-87486739 | None:intergenic | 65.0% | |
| GGAGGGTTTCCGTCAGGACC+TGG | + | chr3.4:87486935-87486954 | MS.gene013288:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87486676 | 87488392 | 87486676 | ID=MS.gene013288 |
| chr3.4 | mRNA | 87486676 | 87488392 | 87486676 | ID=MS.gene013288.t1;Parent=MS.gene013288 |
| chr3.4 | exon | 87486676 | 87486810 | 87486676 | ID=MS.gene013288.t1.exon1;Parent=MS.gene013288.t1 |
| chr3.4 | CDS | 87486676 | 87486810 | 87486676 | ID=cds.MS.gene013288.t1;Parent=MS.gene013288.t1 |
| chr3.4 | exon | 87486922 | 87487027 | 87486922 | ID=MS.gene013288.t1.exon2;Parent=MS.gene013288.t1 |
| chr3.4 | CDS | 87486922 | 87487027 | 87486922 | ID=cds.MS.gene013288.t1;Parent=MS.gene013288.t1 |
| chr3.4 | exon | 87488171 | 87488193 | 87488171 | ID=MS.gene013288.t1.exon3;Parent=MS.gene013288.t1 |
| chr3.4 | CDS | 87488171 | 87488193 | 87488171 | ID=cds.MS.gene013288.t1;Parent=MS.gene013288.t1 |
| chr3.4 | exon | 87488333 | 87488392 | 87488333 | ID=MS.gene013288.t1.exon4;Parent=MS.gene013288.t1 |
| chr3.4 | CDS | 87488333 | 87488392 | 87488333 | ID=cds.MS.gene013288.t1;Parent=MS.gene013288.t1 |
| Gene Sequence |
| Protein sequence |
