Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40919.t1 | XP_024633775.1 | 95.3 | 107 | 5 | 0 | 1 | 107 | 35 | 141 | 2.60E-51 | 211.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40919.t1 | O65154 | 53.8 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 3.8e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40919.t1 | G7JC59 | 95.3 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 1.9e-51 | 211.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene40919 | 0.919602 | 3.67E-87 | -1.69E-46 |
| MS.gene049340 | MS.gene40919 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene049341 | MS.gene40919 | 0.852129 | 5.65E-61 | -1.69E-46 |
| MS.gene049821 | MS.gene40919 | 0.804897 | 1.73E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene40919 | 0.811419 | 7.07E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene40919 | 0.828701 | 7.77E-55 | -1.69E-46 |
| MS.gene050277 | MS.gene40919 | 0.837691 | 4.48E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene40919 | 0.819206 | 1.31E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene40919 | 0.816342 | 5.81E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene40919 | 0.820531 | 6.53E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene40919 | 0.812196 | 4.79E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene40919 | 0.840819 | 6.91E-58 | -1.69E-46 |
| MS.gene05134 | MS.gene40919 | 0.850308 | 1.85E-60 | -1.69E-46 |
| MS.gene052133 | MS.gene40919 | 0.81153 | 6.69E-51 | -1.69E-46 |
| MS.gene052879 | MS.gene40919 | 0.828653 | 7.98E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene40919 | 0.825659 | 4.16E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene40919 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene40919 | 0.808517 | 2.98E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene40919 | 0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene40919 | 0.802155 | 6.41E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene40919 | 0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene40919 | 0.82703 | 1.96E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene40919 | 0.811275 | 7.59E-51 | -1.69E-46 |
| MS.gene055912 | MS.gene40919 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene40919 | 0.826276 | 2.96E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene40919 | 0.820374 | 7.09E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene40919 | 0.800929 | 1.14E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene40919 | 0.820106 | 8.17E-53 | -1.69E-46 |
| MS.gene057694 | MS.gene40919 | 0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene40919 | 0.87096 | 9.83E-67 | -1.69E-46 |
| MS.gene05954 | MS.gene40919 | 0.814481 | 1.51E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene40919 | 0.834586 | 2.75E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene40919 | 0.805455 | 1.32E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene40919 | 0.854628 | 1.08E-61 | -1.69E-46 |
| MS.gene060587 | MS.gene40919 | 0.812891 | 3.37E-51 | -1.69E-46 |
| MS.gene060917 | MS.gene40919 | 0.818346 | 2.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62900 | MS.gene40919 | PPI |
| MS.gene40919 | MS.gene71947 | PPI |
| MS.gene40919 | MS.gene011532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40919.t1 | MTR_3g096690 | 95.327 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 8.42e-72 | 209 |
| MS.gene40919.t1 | MTR_8g099650 | 50.704 | 71 | 34 | 1 | 37 | 106 | 95 | 165 | 2.66e-19 | 78.2 |
| MS.gene40919.t1 | MTR_8g445550 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene40919.t1 | MTR_8g445560 | 38.462 | 91 | 50 | 2 | 17 | 103 | 30 | 118 | 4.11e-14 | 63.5 |
| MS.gene40919.t1 | MTR_0021s0240 | 34.737 | 95 | 58 | 1 | 13 | 103 | 62 | 156 | 4.39e-13 | 62.0 |
| MS.gene40919.t1 | MTR_8g099650 | 56.522 | 46 | 19 | 1 | 37 | 81 | 95 | 140 | 1.34e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40919.t1 | AT5G09250 | 53.774 | 106 | 47 | 1 | 4 | 107 | 2 | 107 | 1.38e-36 | 120 |
| MS.gene40919.t1 | AT5G09250 | 56.322 | 87 | 36 | 1 | 4 | 88 | 2 | 88 | 1.15e-29 | 103 |
| MS.gene40919.t1 | AT5G09250 | 60.606 | 66 | 26 | 0 | 42 | 107 | 45 | 110 | 1.02e-26 | 95.5 |
| MS.gene40919.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene40919.t1 | AT5G09250 | 56.250 | 80 | 33 | 1 | 4 | 81 | 2 | 81 | 3.55e-26 | 93.2 |
| MS.gene40919.t1 | AT5G09240 | 49.057 | 106 | 47 | 4 | 7 | 107 | 5 | 108 | 2.94e-25 | 91.7 |
| MS.gene40919.t1 | AT5G09240 | 38.806 | 134 | 47 | 5 | 7 | 107 | 5 | 136 | 2.83e-19 | 77.4 |
| MS.gene40919.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene40919.t1 | AT4G10920 | 46.377 | 69 | 36 | 1 | 37 | 104 | 91 | 159 | 7.11e-15 | 66.6 |
| MS.gene40919.t1 | AT5G09240 | 40.659 | 91 | 47 | 4 | 7 | 92 | 5 | 93 | 1.02e-14 | 65.1 |
Find 27 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAACTGCTTGCCATCTT+TGG | 0.270224 | 3.2:-80675939 | None:intergenic |
| ATCTTCGGTGTCTTTCTTGA+CGG | 0.374479 | 3.2:-80675708 | None:intergenic |
| TTCGAGAAAATGTCTGGAAC+TGG | 0.399428 | 3.2:+80675611 | None:intergenic |
| TGCAGTCAAGGAGAAATCTT+AGG | 0.405151 | 3.2:+80677309 | MS.gene40919:CDS |
| GGACCTGGAATAAACAGCTT+TGG | 0.407824 | 3.2:+80675894 | MS.gene40919:CDS |
| CTCTGGTGACATCGTCTTTG+AGG | 0.410093 | 3.2:+80675733 | MS.gene40919:CDS |
| GACCTGGAATAAACAGCTTT+GGG | 0.423013 | 3.2:+80675895 | MS.gene40919:CDS |
| GACCCAAAGCTGTTTATTCC+AGG | 0.428597 | 3.2:-80675897 | None:intergenic |
| TCACACAGATTGGGAAGAAC+AGG | 0.436451 | 3.2:+80675858 | MS.gene40919:intron |
| AAAATGTCTGGAACTGGAAA+GGG | 0.461735 | 3.2:+80675617 | None:intergenic |
| AAAGATGGCAAGCAGTTGCC+TGG | 0.493882 | 3.2:+80675941 | MS.gene40919:CDS |
| GGAGGGTTTCCGTCAGGACC+TGG | 0.520075 | 3.2:+80675879 | MS.gene40919:CDS |
| AGAACAGGAGGGTTTCCGTC+AGG | 0.528840 | 3.2:+80675873 | MS.gene40919:CDS |
| TATCTCACTGAACATGGAAC+AGG | 0.529561 | 3.2:+80677110 | MS.gene40919:CDS |
| CTGTTTATTCCAGGTCCTGA+CGG | 0.540066 | 3.2:-80675888 | None:intergenic |
| GAACTGGAAAGGGGAAGAAG+AGG | 0.541717 | 3.2:+80675627 | MS.gene40919:CDS |
| TACAGGTATCTCACTGAACA+TGG | 0.547966 | 3.2:+80677104 | MS.gene40919:intron |
| GAAAATGTCTGGAACTGGAA+AGG | 0.556354 | 3.2:+80675616 | None:intergenic |
| AGAAATTGACAATGCAGTCA+AGG | 0.563704 | 3.2:+80677297 | MS.gene40919:CDS |
| CACAGATTGGGAAGAACAGG+AGG | 0.580072 | 3.2:+80675861 | MS.gene40919:intron |
| AACTGGAAAGGGGAAGAAGA+GGG | 0.582966 | 3.2:+80675628 | MS.gene40919:CDS |
| GATGTCACCAGAGTCATCTT+CGG | 0.584157 | 3.2:-80675723 | None:intergenic |
| AAAGACACCGAAGATGACTC+TGG | 0.589702 | 3.2:+80675716 | MS.gene40919:CDS |
| CAGTGTCGTCGTCGGAAGCG+TGG | 0.607696 | 3.2:-80675661 | None:intergenic |
| GTGAGATTCAGTGTCGTCGT+CGG | 0.626224 | 3.2:-80675669 | None:intergenic |
| AAATGTCTGGAACTGGAAAG+GGG | 0.652792 | 3.2:+80675618 | None:intergenic |
| ACAGATTGGGAAGAACAGGA+GGG | 0.709677 | 3.2:+80675862 | MS.gene40919:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCCATAAAATTGAAT+TGG | - | chr3.2:80676826-80676845 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTATGGAAATTT+TGG | + | chr3.2:80676826-80676845 | MS.gene40919:intron | 15.0% |
| !!! | TGTTTATGAAATCTTTTAAT+GGG | + | chr3.2:80676028-80676047 | MS.gene40919:intron | 15.0% |
| !!! | TTGTTTATGAAATCTTTTAA+TGG | + | chr3.2:80676027-80676046 | MS.gene40919:intron | 15.0% |
| !!! | TTTCATAATGAGATTTTATT+AGG | + | chr3.2:80676588-80676607 | MS.gene40919:intron | 15.0% |
| !! | ATCTATTCAGATAACAAATT+AGG | - | chr3.2:80676108-80676127 | None:intergenic | 20.0% |
| !! | CAAAATTGATAAACAAAATC+AGG | - | chr3.2:80676793-80676812 | None:intergenic | 20.0% |
| !! | TTATTTGCAAACATTTAAGT+TGG | + | chr3.2:80676694-80676713 | MS.gene40919:intron | 20.0% |
| !!! | TATTTGCAAACATTTAAGTT+GGG | + | chr3.2:80676695-80676714 | MS.gene40919:intron | 20.0% |
| !!! | TTTTCTCCAATTCAATTTTA+TGG | + | chr3.2:80676817-80676836 | MS.gene40919:intron | 20.0% |
| !!! | TTTTTTGTTCTTGAAATCTA+GGG | + | chr3.2:80675794-80675813 | MS.gene40919:intron | 20.0% |
| !!! | TTTTTTTGTTCTTGAAATCT+AGG | + | chr3.2:80675793-80675812 | MS.gene40919:intron | 20.0% |
| ! | AAAACATAAGTTATCTTGCT+TGG | + | chr3.2:80677030-80677049 | MS.gene40919:intron | 25.0% |
| ! | AAAGATTTCATAAACAACGA+AGG | - | chr3.2:80676024-80676043 | None:intergenic | 25.0% |
| ! | AACAAAAAAAACCCTAGTAA+TGG | - | chr3.2:80675783-80675802 | None:intergenic | 25.0% |
| ! | AGATTCTTGAAATGATGAAT+AGG | + | chr3.2:80676124-80676143 | MS.gene40919:intron | 25.0% |
| ! | TATTCATGTTTCAGATTTGT+TGG | + | chr3.2:80677185-80677204 | MS.gene40919:intron | 25.0% |
| !! | ATCTGAAACATGAATAGAAA+AGG | - | chr3.2:80677181-80677200 | None:intergenic | 25.0% |
| !!! | GATTAGGTTTTGAAATAGAA+TGG | + | chr3.2:80676064-80676083 | MS.gene40919:intron | 25.0% |
| !!! | TTGATTCTTTTGATTGAAAG+TGG | + | chr3.2:80676528-80676547 | MS.gene40919:intron | 25.0% |
| AAATCACCAATTGAATTCAC+TGG | - | chr3.2:80676447-80676466 | None:intergenic | 30.0% | |
| AACATGTTAGAGTATGTTGA+AGG | - | chr3.2:80676213-80676232 | None:intergenic | 30.0% | |
| ATGTTATCGATCTCAGATAA+TGG | - | chr3.2:80676352-80676371 | None:intergenic | 30.0% | |
| GAAATGATGAATAGGATCAT+AGG | + | chr3.2:80676132-80676151 | MS.gene40919:intron | 30.0% | |
| GCAGTTTGTGAGAAAAATAT+AGG | + | chr3.2:80676631-80676650 | MS.gene40919:intron | 30.0% | |
| GTTGAAAATACTGTAGTTGT+TGG | + | chr3.2:80676742-80676761 | MS.gene40919:intron | 30.0% | |
| TGACATTTGTTTACTTGTAC+AGG | + | chr3.2:80677087-80677106 | MS.gene40919:intron | 30.0% | |
| TTAATCAAGTGAATGGACAA+AGG | + | chr3.2:80676766-80676785 | MS.gene40919:intron | 30.0% | |
| TTGCTGATAATTAAGTTCAC+AGG | - | chr3.2:80676502-80676521 | None:intergenic | 30.0% | |
| ! | GAAAGTTTGGAAGTAGTTTT+AGG | + | chr3.2:80676717-80676736 | MS.gene40919:intron | 30.0% |
| ! | GGGTTATTTGCTTATTGATT+AGG | + | chr3.2:80676048-80676067 | MS.gene40919:intron | 30.0% |
| ! | TTATCTGAGATCGATAACAT+AGG | + | chr3.2:80676352-80676371 | MS.gene40919:intron | 30.0% |
| ! | TTCGTGAACTACATTTGTTT+TGG | + | chr3.2:80676937-80676956 | MS.gene40919:intron | 30.0% |
| !! | AAAGGTTTTTAAGAGAAGCT+TGG | + | chr3.2:80676903-80676922 | MS.gene40919:intron | 30.0% |
| !! | ACATTTAAGTTGGGAAAGTT+TGG | + | chr3.2:80676704-80676723 | MS.gene40919:intron | 30.0% |
| !! | ATTCTTTTGATTGAAAGTGG+TGG | + | chr3.2:80676531-80676550 | MS.gene40919:intron | 30.0% |
| !! | TGTTGGTTTAATCAAGTGAA+TGG | + | chr3.2:80676759-80676778 | MS.gene40919:intron | 30.0% |
| !!! | ATCTGCTATACCATTTTTTG+GGG | + | chr3.2:80676313-80676332 | MS.gene40919:intron | 30.0% |
| !!! | CATCTGCTATACCATTTTTT+GGG | + | chr3.2:80676312-80676331 | MS.gene40919:intron | 30.0% |
| !!! | TCTTTCTTGACGGTTTTTTT+GGG | - | chr3.2:80675701-80675720 | None:intergenic | 30.0% |
| ACATAAGTTATCTTGCTTGG+TGG | + | chr3.2:80677033-80677052 | MS.gene40919:intron | 35.0% | |
| AGAAATTGACAATGCAGTCA+AGG | + | chr3.2:80677297-80677316 | MS.gene40919:CDS | 35.0% | |
| ATAAGACAGCAATCAAGGTT+TGG | - | chr3.2:80677005-80677024 | None:intergenic | 35.0% | |
| ATCGATAACATAGGTAGTAG+TGG | + | chr3.2:80676361-80676380 | MS.gene40919:intron | 35.0% | |
| CAACAATAAGACAGCAATCA+AGG | - | chr3.2:80677010-80677029 | None:intergenic | 35.0% | |
| CACAGATTCATGACAAAATG+AGG | - | chr3.2:80675990-80676009 | None:intergenic | 35.0% | |
| CCAAAAAATGGTATAGCAGA+TGG | - | chr3.2:80676314-80676333 | None:intergenic | 35.0% | |
| GAAATTCAAACTCCTAGTGA+TGG | + | chr3.2:80676879-80676898 | MS.gene40919:intron | 35.0% | |
| GATTTCGTTTCACACAGATT+GGG | + | chr3.2:80675849-80675868 | MS.gene40919:intron | 35.0% | |
| TAAAAACCTTTGCCATCACT+AGG | - | chr3.2:80676894-80676913 | None:intergenic | 35.0% | |
| TGATTTCGTTTCACACAGAT+TGG | + | chr3.2:80675848-80675867 | MS.gene40919:intron | 35.0% | |
| TTGTCATGAATCTGTGAAGA+TGG | + | chr3.2:80675994-80676013 | MS.gene40919:intron | 35.0% | |
| ! | AAAAACCCTAGTAATGGAGT+TGG | - | chr3.2:80675777-80675796 | None:intergenic | 35.0% |
| ! | AAAACCCTAGTAATGGAGTT+GGG | - | chr3.2:80675776-80675795 | None:intergenic | 35.0% |
| ! | AATCAAGGTTTGGTAGGAAA+GGG | - | chr3.2:80676995-80677014 | None:intergenic | 35.0% |
| ! | CGCGAATTTTATACCAAAGA+TGG | + | chr3.2:80675926-80675945 | MS.gene40919:CDS | 35.0% |
| ! | GCAATCGTGTTAAGTTGTAT+TGG | + | chr3.2:80676468-80676487 | MS.gene40919:intron | 35.0% |
| !! | CATGTTTCAGATTTGTTGGT+CGG | + | chr3.2:80677189-80677208 | MS.gene40919:intron | 35.0% |
| !!! | CCATCTGCTATACCATTTTT+TGG | + | chr3.2:80676311-80676330 | MS.gene40919:intron | 35.0% |
| !!! | GTCTTTCTTGACGGTTTTTT+TGG | - | chr3.2:80675702-80675721 | None:intergenic | 35.0% |
| AAGAGAAGCTTGGAGTATGT+TGG | + | chr3.2:80676913-80676932 | MS.gene40919:intron | 40.0% | |
| ATCAGCACACACAGTACAAA+TGG | - | chr3.2:80676411-80676430 | None:intergenic | 40.0% | |
| GACCTGGAATAAACAGCTTT+GGG | + | chr3.2:80675895-80675914 | MS.gene40919:CDS | 40.0% | |
| GTGTTGCCAGTGAATTCAAT+TGG | + | chr3.2:80676438-80676457 | MS.gene40919:intron | 40.0% | |
| TAACGAGTTCCGACATAAGT+TGG | - | chr3.2:80676557-80676576 | None:intergenic | 40.0% | |
| TACAGGTATCTCACTGAACA+TGG | + | chr3.2:80677104-80677123 | MS.gene40919:intron | 40.0% | |
| TATCTCACTGAACATGGAAC+AGG | + | chr3.2:80677110-80677129 | MS.gene40919:CDS | 40.0% | |
| ! | AAACCCTAGTAATGGAGTTG+GGG | - | chr3.2:80675775-80675794 | None:intergenic | 40.0% |
| ! | AATGGAGTTGGGGGTTTTTA+AGG | - | chr3.2:80675765-80675784 | None:intergenic | 40.0% |
| ! | AGTGGTGCATGATTTTCTCA+GGG | + | chr3.2:80676379-80676398 | MS.gene40919:intron | 40.0% |
| ! | CAATCAAGGTTTGGTAGGAA+AGG | - | chr3.2:80676996-80677015 | None:intergenic | 40.0% |
| ! | TAAGTTATCTTGCTTGGTGG+TGG | + | chr3.2:80677036-80677055 | MS.gene40919:intron | 40.0% |
| ! | TAGTGGTGCATGATTTTCTC+AGG | + | chr3.2:80676378-80676397 | MS.gene40919:intron | 40.0% |
| ! | TTGCCTGGCAAAAAAGGTAT+CGG | + | chr3.2:80675956-80675975 | MS.gene40919:intron | 40.0% |
| !! | ATCTTCGGTGTCTTTCTTGA+CGG | - | chr3.2:80675711-80675730 | None:intergenic | 40.0% |
| !!! | AATCCGATACCTTTTTTGCC+AGG | - | chr3.2:80675962-80675981 | None:intergenic | 40.0% |
| !!! | GCTATACCATTTTTTGGGGT+TGG | + | chr3.2:80676317-80676336 | MS.gene40919:intron | 40.0% |
| !!! | TTCTTGACGGTTTTTTTGGG+AGG | - | chr3.2:80675698-80675717 | None:intergenic | 40.0% |
| AAACCCCCAACTCCATTACT+AGG | + | chr3.2:80675768-80675787 | MS.gene40919:intron | 45.0% | |
| AAAGACACCGAAGATGACTC+TGG | + | chr3.2:80675716-80675735 | MS.gene40919:CDS | 45.0% | |
| AACCCCCAACTCCATTACTA+GGG | + | chr3.2:80675769-80675788 | MS.gene40919:intron | 45.0% | |
| AACTGGAAAGGGGAAGAAGA+GGG | + | chr3.2:80675628-80675647 | MS.gene40919:CDS | 45.0% | |
| AAGCAGTTGCCTGGCAAAAA+AGG | + | chr3.2:80675950-80675969 | MS.gene40919:CDS | 45.0% | |
| AAGTGGTGGCCAACTTATGT+CGG | + | chr3.2:80676545-80676564 | MS.gene40919:intron | 45.0% | |
| ACAGATTGGGAAGAACAGGA+GGG | + | chr3.2:80675862-80675881 | MS.gene40919:intron | 45.0% | |
| AGAAATGCCACTACTCTCGA+AGG | - | chr3.2:80676290-80676309 | None:intergenic | 45.0% | |
| CAAACTCCTAGTGATGGCAA+AGG | + | chr3.2:80676885-80676904 | MS.gene40919:intron | 45.0% | |
| CTGTCAATCACGTGCTATAG+CGG | + | chr3.2:80676254-80676273 | MS.gene40919:intron | 45.0% | |
| CTGTTTATTCCAGGTCCTGA+CGG | - | chr3.2:80675891-80675910 | None:intergenic | 45.0% | |
| GACCCAAAGCTGTTTATTCC+AGG | - | chr3.2:80675900-80675919 | None:intergenic | 45.0% | |
| GATGTCACCAGAGTCATCTT+CGG | - | chr3.2:80675726-80675745 | None:intergenic | 45.0% | |
| GGACCTGGAATAAACAGCTT+TGG | + | chr3.2:80675894-80675913 | MS.gene40919:CDS | 45.0% | |
| GTAGCACCAACCCCAAAAAA+TGG | - | chr3.2:80676326-80676345 | None:intergenic | 45.0% | |
| GTAGGAAAGGGAAAGGGAAA+GGG | - | chr3.2:80676983-80677002 | None:intergenic | 45.0% | |
| TCACACAGATTGGGAAGAAC+AGG | + | chr3.2:80675858-80675877 | MS.gene40919:intron | 45.0% | |
| TCTTTCTCTTGTGTGTGCAG+TGG | + | chr3.2:80677251-80677270 | MS.gene40919:intron | 45.0% | |
| ! | AACCCTAGTAATGGAGTTGG+GGG | - | chr3.2:80675774-80675793 | None:intergenic | 45.0% |
| ! | AGGTTTGGTAGGAAAGGGAA+AGG | - | chr3.2:80676990-80677009 | None:intergenic | 45.0% |
| ! | GACAGCAATCAAGGTTTGGT+AGG | - | chr3.2:80677001-80677020 | None:intergenic | 45.0% |
| ! | GGTTTGGTAGGAAAGGGAAA+GGG | - | chr3.2:80676989-80677008 | None:intergenic | 45.0% |
| !! | AGATTTGTTGGTCGGTCAAC+AGG | + | chr3.2:80677197-80677216 | MS.gene40919:intron | 45.0% |
| AAAGATGGCAAGCAGTTGCC+TGG | + | chr3.2:80675941-80675960 | MS.gene40919:CDS | 50.0% | |
| AGGCAACTGCTTGCCATCTT+TGG | - | chr3.2:80675942-80675961 | None:intergenic | 50.0% | |
| CACAGATTGGGAAGAACAGG+AGG | + | chr3.2:80675861-80675880 | MS.gene40919:intron | 50.0% | |
| CTCTGGTGACATCGTCTTTG+AGG | + | chr3.2:80675733-80675752 | MS.gene40919:CDS | 50.0% | |
| GAACTGGAAAGGGGAAGAAG+AGG | + | chr3.2:80675627-80675646 | MS.gene40919:CDS | 50.0% | |
| GGTAGGAAAGGGAAAGGGAA+AGG | - | chr3.2:80676984-80677003 | None:intergenic | 50.0% | |
| GTGAGATTCAGTGTCGTCGT+CGG | - | chr3.2:80675672-80675691 | None:intergenic | 50.0% | |
| !! | GGTGACATCGTCTTTGAGGT+AGG | + | chr3.2:80675737-80675756 | MS.gene40919:intron | 50.0% |
| AGAACAGGAGGGTTTCCGTC+AGG | + | chr3.2:80675873-80675892 | MS.gene40919:CDS | 55.0% | |
| AGCGTGACCTTCGAGAGTAG+TGG | + | chr3.2:80676280-80676299 | MS.gene40919:intron | 55.0% | |
| CAGTGTCGTCGTCGGAAGCG+TGG | - | chr3.2:80675664-80675683 | None:intergenic | 65.0% | |
| GGAGGGTTTCCGTCAGGACC+TGG | + | chr3.2:80675879-80675898 | MS.gene40919:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80675620 | 80677330 | 80675620 | ID=MS.gene40919 |
| chr3.2 | mRNA | 80675620 | 80677330 | 80675620 | ID=MS.gene40919.t1;Parent=MS.gene40919 |
| chr3.2 | exon | 80675620 | 80675754 | 80675620 | ID=MS.gene40919.t1.exon1;Parent=MS.gene40919.t1 |
| chr3.2 | CDS | 80675620 | 80675754 | 80675620 | ID=cds.MS.gene40919.t1;Parent=MS.gene40919.t1 |
| chr3.2 | exon | 80675866 | 80675971 | 80675866 | ID=MS.gene40919.t1.exon2;Parent=MS.gene40919.t1 |
| chr3.2 | CDS | 80675866 | 80675971 | 80675866 | ID=cds.MS.gene40919.t1;Parent=MS.gene40919.t1 |
| chr3.2 | exon | 80677109 | 80677131 | 80677109 | ID=MS.gene40919.t1.exon3;Parent=MS.gene40919.t1 |
| chr3.2 | CDS | 80677109 | 80677131 | 80677109 | ID=cds.MS.gene40919.t1;Parent=MS.gene40919.t1 |
| chr3.2 | exon | 80677271 | 80677330 | 80677271 | ID=MS.gene40919.t1.exon4;Parent=MS.gene40919.t1 |
| chr3.2 | CDS | 80677271 | 80677330 | 80677271 | ID=cds.MS.gene40919.t1;Parent=MS.gene40919.t1 |
| Gene Sequence |
| Protein sequence |
