AlfalfaGEDB | MS.gene012049

M. sativa cultivar XinJiangDaYe / MS.gene012049

KEGG: K02935
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00542.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012049.t1	XP_003629385.1	91.3	126	11	0	1	126	70	195	5.40E-48	200.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012049.t1	P41189	57.7	78	33	0	44	121	43	120	4.3e-14	79.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012049.t1	G7LD30	91.3	126	11	0	1	126	70	195	3.9e-48	200.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene012049	MS.gene89107	PPI
MS.gene012049	MS.gene22417	PPI
MS.gene012049	MS.gene007531	PPI
MS.gene012049	MS.gene61205	PPI
MS.gene36292	MS.gene012049	PPI
MS.gene007416	MS.gene012049	PPI
MS.gene20079	MS.gene012049	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012049.t1	MTR_8g076780	99.206	126	1	0	1	126	70	195	3.56e-81	236
MS.gene012049.t1	MTR_2g031960	53.043	115	52	1	14	126	41	155	1.41e-30	107
MS.gene012049.t1	MTR_2g031760	61.386	101	34	1	26	126	95	190	1.63e-29	105
MS.gene012049.t1	MTR_2g064300	51.304	115	47	2	20	126	103	216	7.90e-27	99.4
MS.gene012049.t1	MTR_7g053520	55.046	109	40	2	26	126	110	217	5.40e-26	97.4
MS.gene012049.t1	MTR_6g006060	45.714	70	38	0	56	125	111	180	7.83e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012049.t1	AT4G36420	61.111	126	42	3	1	126	61	179	9.15e-39	129
MS.gene012049.t1	AT3G06040	63.441	93	30	1	34	126	98	186	6.98e-30	106
MS.gene012049.t1	AT3G06040	63.441	93	30	1	34	126	98	186	6.98e-30	106
MS.gene012049.t1	AT3G06040	63.441	93	30	1	34	126	98	186	6.98e-30	106
MS.gene012049.t1	AT1G70190	51.639	122	53	3	6	126	92	208	1.33e-24	93.6
MS.gene012049.t1	AT1G70190	51.639	122	53	3	6	126	92	208	1.33e-24	93.6
MS.gene012049.t1	AT4G37660	69.118	68	21	0	59	126	100	167	2.56e-24	91.7
MS.gene012049.t1	AT2G03130	48.315	89	42	1	38	126	7	91	2.52e-15	67.0
MS.gene012049.t1	AT3G27830	52.055	73	35	0	53	125	118	190	3.27e-15	68.6
MS.gene012049.t1	AT3G27830	52.055	73	35	0	53	125	118	190	3.27e-15	68.6
MS.gene012049.t1	AT3G27850	52.055	73	35	0	53	125	114	186	3.53e-15	68.6
MS.gene012049.t1	AT3G27840	43.210	81	46	0	45	125	112	192	1.64e-13	64.3

Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAAGTTATTAAAGAAGTT+AGG	+	50848:17817-17836	MS.gene012049:CDS	15.0%
	GATTATTGCTAAGTTAAAGG+AGG	+	50848:17935-17954	MS.gene012049:CDS	30.0%
!	AGTTAGGAGTTTTACTAGTT+TGG	+	50848:17833-17852	MS.gene012049:CDS	30.0%
!!	GTTAGGAGTTTTACTAGTTT+GGG	+	50848:17834-17853	MS.gene012049:CDS	30.0%
!!	TTAGGAGTTTTACTAGTTTG+GGG	+	50848:17835-17854	MS.gene012049:CDS	30.0%
	ATTGCTAAGTTAAAGGAGGT+TGG	+	50848:17939-17958	MS.gene012049:CDS	35.0%
	GAAGTAATGCGAGAGAAAAA+GGG	+	50848:17615-17634	MS.gene012049:CDS	35.0%
	GGAACCATCAACATCATAAT+CGG	-	50848:17654-17673	MS.gene012049:intergenic	35.0%
	GGGGATTATTGCTAAGTTAA+AGG	+	50848:17932-17951	MS.gene012049:CDS	35.0%
	TAACTTAGCAATAATCCCCT+CGG	-	50848:17931-17950	MS.gene012049:intergenic	35.0%
	TGAAGTAATGCGAGAGAAAA+AGG	+	50848:17614-17633	MS.gene012049:CDS	35.0%
!!	ATTATGATGTTGATGGTTCC+TGG	+	50848:17654-17673	MS.gene012049:CDS	35.0%
!!	TTTTACTAGTTTGGGGTTGA+AGG	+	50848:17842-17861	MS.gene012049:CDS	35.0%
	GCTTCCGATTATGATGTTGA+TGG	+	50848:17647-17666	MS.gene012049:CDS	40.0%
	GTTGAAGGAAGCTAAGGATT+TGG	+	50848:17857-17876	MS.gene012049:CDS	40.0%
!	ACACCTTTCTTCAAAAGCGT+AGG	-	50848:17894-17913	MS.gene012049:intergenic	40.0%
!!	ATGTTGATGGTTCCTGGAAT+GGG	+	50848:17660-17679	MS.gene012049:CDS	40.0%
!!!	GAAGCTTGATGGTTTTGATG+CGG	+	50848:17785-17804	MS.gene012049:CDS	40.0%
	ATTCCCCTTATTCCCATTCC+AGG	-	50848:17675-17694	MS.gene012049:intergenic	45.0%
	GAAGGAAGCTAAGGATTTGG+TGG	+	50848:17860-17879	MS.gene012049:CDS	45.0%
	GCGTTTGATGTGAAGCTTGA+TGG	+	50848:17774-17793	MS.gene012049:CDS	45.0%
	GGTTCCTGGAATGGGAATAA+GGG	+	50848:17668-17687	MS.gene012049:CDS	45.0%
	GTTCCTGGAATGGGAATAAG+GGG	+	50848:17669-17688	MS.gene012049:CDS	45.0%
	TGGTTCCTGGAATGGGAATA+AGG	+	50848:17667-17686	MS.gene012049:CDS	45.0%
!	GAAAGGTGTGACGAAAGAAG+AGG	+	50848:17905-17924	MS.gene012049:CDS	45.0%
!	GGGGTGGTGATAGTGAAAAA+GGG	+	50848:17721-17740	MS.gene012049:CDS	45.0%
!	GGGTGGTGATAGTGAAAAAG+GGG	+	50848:17722-17741	MS.gene012049:CDS	45.0%
!	GGTGGTGATAGTGAAAAAGG+GGG	+	50848:17723-17742	MS.gene012049:CDS	45.0%
!	GGTTGGTGCAAAAGCTTCTA+TGG	+	50848:17956-17975	MS.gene012049:CDS	45.0%
!	TGATAGTGAAAAAGGGGGTG+AGG	+	50848:17728-17747	MS.gene012049:CDS	45.0%
!	TTTGGGGTTGAAGGAAGCTA+AGG	+	50848:17851-17870	MS.gene012049:CDS	45.0%
!!	GATGTTGATGGTTCCTGGAA+TGG	+	50848:17659-17678	MS.gene012049:CDS	45.0%
!!	TCGCCTACGCTTTTGAAGAA+AGG	+	50848:17888-17907	MS.gene012049:CDS	45.0%
	GGGTGAGGTGAAGAAAGTTG+AGG	+	50848:17743-17762	MS.gene012049:CDS	50.0%
!	GGGGGTGGTGATAGTGAAAA+AGG	+	50848:17720-17739	MS.gene012049:CDS	50.0%
	AGGTGTAGGTGGAGGGAAAG+GGG	+	50848:17701-17720	MS.gene012049:CDS	55.0%
	GAGGTGTAGGTGGAGGGAAA+GGG	+	50848:17700-17719	MS.gene012049:CDS	55.0%
	GGAATAAGGGGAATGCCGAG+AGG	+	50848:17681-17700	MS.gene012049:CDS	55.0%
	GTGACGAAAGAAGAGGCCGA+GGG	+	50848:17912-17931	MS.gene012049:CDS	55.0%
	TGACGAAAGAAGAGGCCGAG+GGG	+	50848:17913-17932	MS.gene012049:CDS	55.0%
	TGTGACGAAAGAAGAGGCCG+AGG	+	50848:17911-17930	MS.gene012049:CDS	55.0%
	TTCCCTCCACCTACACCTCT+CGG	-	50848:17699-17718	MS.gene012049:intergenic	55.0%
!	AGAGGTGTAGGTGGAGGGAA+AGG	+	50848:17699-17718	MS.gene012049:CDS	55.0%
	GGTGTAGGTGGAGGGAAAGG+GGG	+	50848:17702-17721	MS.gene012049:CDS	60.0%
!	AGGGGAATGCCGAGAGGTGT+AGG	+	50848:17687-17706	MS.gene012049:CDS	60.0%
!	ATGCCGAGAGGTGTAGGTGG+AGG	+	50848:17693-17712	MS.gene012049:CDS	60.0%
!	GGAATGCCGAGAGGTGTAGG+TGG	+	50848:17690-17709	MS.gene012049:CDS	60.0%
!	TGCCGAGAGGTGTAGGTGGA+GGG	+	50848:17694-17713	MS.gene012049:CDS	60.0%
	GTAGGTGGAGGGAAAGGGGG+TGG	+	50848:17705-17724	MS.gene012049:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
50848	gene	17603	17983	17603	ID=MS.gene012049
50848	mRNA	17603	17983	17603	ID=MS.gene012049.t1;Parent=MS.gene012049
50848	exon	17603	17983	17603	ID=MS.gene012049.t1.exon1;Parent=MS.gene012049.t1
50848	CDS	17603	17983	17603	ID=cds.MS.gene012049.t1;Parent=MS.gene012049.t1

Gene Sequence

>MS.gene012049

ATGGATCTCGTTGAAGTAATGCGAGAGAAAAAGGGAATCAACGAGCTTCCGATTATGATGTTGATGGTTCCTGGAATGGGAATAAGGGGAATGCCGAGAGGTGTAGGTGGAGGGAAAGGGGGTGGTGATAGTGAAAAAGGGGGTGAGGTGAAGAAAGTTGAGGAGAAAACTGCGTTTGATGTGAAGCTTGATGGTTTTGATGCGGCGTCAAAGATTAAAGTTATTAAAGAAGTTAGGAGTTTTACTAGTTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAATCGCCTACGCTTTTGAAGAAAGGTGTGACGAAAGAAGAGGCCGAGGGGATTATTGCTAAGTTAAAGGAGGTTGGTGCAAAAGCTTCTATGGAATAA

Protein sequence

>MS.gene012049.t1

MDLVEVMREKKGINELPIMMLMVPGMGIRGMPRGVGGGKGGGDSEKGGEVKKVEEKTAFDVKLDGFDAASKIKVIKEVRSFTSLGLKEAKDLVEKSPTLLKKGVTKEEAEGIIAKLKEVGAKASME