Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22417.t1 | XP_003625667.2 | 98.7 | 237 | 3 | 0 | 1 | 237 | 56 | 292 | 3.30E-131 | 477.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22417.t1 | Q62348 | 39.2 | 232 | 129 | 5 | 10 | 234 | 2 | 228 | 2.0e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22417.t1 | G7L3U6 | 98.7 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 2.4e-131 | 477.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012049 | MS.gene22417 | PPI |
| MS.gene89612 | MS.gene22417 | PPI |
| MS.gene038492 | MS.gene22417 | PPI |
| MS.gene22417 | MS.gene012053 | PPI |
| MS.gene22417 | MS.gene87851 | PPI |
| MS.gene22417 | MS.gene012051 | PPI |
| MS.gene22417 | MS.gene019409 | PPI |
| MS.gene37518 | MS.gene22417 | PPI |
| MS.gene22417 | MS.gene61042 | PPI |
| MS.gene22417 | MS.gene02480 | PPI |
| MS.gene071737 | MS.gene22417 | PPI |
| MS.gene23620 | MS.gene22417 | PPI |
| MS.gene22417 | MS.gene71227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22417.t1 | MTR_7g101760 | 98.734 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 2.94e-178 | 488 |
| MS.gene22417.t1 | MTR_7g101760 | 97.468 | 237 | 3 | 1 | 1 | 237 | 56 | 289 | 4.58e-174 | 480 |
| MS.gene22417.t1 | MTR_7g101760 | 96.667 | 150 | 4 | 1 | 1 | 149 | 56 | 205 | 2.01e-104 | 301 |
| MS.gene22417.t1 | MTR_7g101760 | 94.444 | 144 | 4 | 2 | 7 | 149 | 62 | 202 | 1.63e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22417.t1 | AT2G37020 | 70.175 | 228 | 68 | 0 | 10 | 237 | 82 | 309 | 3.98e-117 | 337 |
| MS.gene22417.t1 | AT2G37020 | 70.175 | 228 | 68 | 0 | 10 | 237 | 81 | 308 | 4.02e-117 | 337 |
| MS.gene22417.t1 | AT2G37020 | 66.892 | 148 | 49 | 0 | 10 | 157 | 82 | 229 | 7.72e-66 | 204 |
Find 50 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTACGATGTTAAGATTA+GGG | 0.288887 | 7.3:+11637102 | MS.gene22417:CDS |
| CGGAAACAACGGTTCGAATT+CGG | 0.315878 | 7.3:-11633645 | None:intergenic |
| CCTAGTGGTGGATTCAATTT+CGG | 0.328394 | 7.3:-11633665 | None:intergenic |
| AAGCAACTTGCTGATATTCT+TGG | 0.339733 | 7.3:+11634220 | MS.gene22417:CDS |
| TTTACTACGATGTTAAGATT+AGG | 0.364173 | 7.3:+11637101 | MS.gene22417:CDS |
| AAGAGTGCTTACCAATTCAT+TGG | 0.382693 | 7.3:-11636451 | None:intergenic |
| CATTTCGTAGATTGAGCATT+CGG | 0.387062 | 7.3:-11636751 | None:intergenic |
| TTTGCGCACTGGCTTGAAAC+GGG | 0.417853 | 7.3:+11634405 | MS.gene22417:CDS |
| CCATCTCTCGAGAAGCAATT+CGG | 0.422428 | 7.3:+11633580 | MS.gene22417:CDS |
| AATGTAGGTATCACGGTGAT+TGG | 0.428571 | 7.3:+11634346 | MS.gene22417:intron |
| GATATCCTGGTCAATACTAT+AGG | 0.431215 | 7.3:+11634245 | MS.gene22417:CDS |
| AGAACTCATCTCGAACAATC+TGG | 0.437715 | 7.3:+11633610 | MS.gene22417:CDS |
| GTGGTTAATCAAGTAACAGC+TGG | 0.470525 | 7.3:+11636671 | MS.gene22417:CDS |
| AAAGAAGCCGAGGAAATGCT+TGG | 0.474222 | 7.3:+11634444 | MS.gene22417:CDS |
| CCGAATTGCTTCTCGAGAGA+TGG | 0.478123 | 7.3:-11633580 | None:intergenic |
| GATATTCTTGGAGGATATCC+TGG | 0.480077 | 7.3:+11634232 | MS.gene22417:CDS |
| ATCTGCAACTGACTCACCAT+TGG | 0.480540 | 7.3:-11637134 | None:intergenic |
| CAACTTGCTGATATTCTTGG+AGG | 0.493720 | 7.3:+11634223 | MS.gene22417:CDS |
| GGTTCGAATTCGGTCGCGTA+AGG | 0.501714 | 7.3:-11633635 | None:intergenic |
| CATCACTCTCGTCCTACTCC+AGG | 0.507042 | 7.3:+11633715 | MS.gene22417:CDS |
| TCTGCAACTGACTCACCATT+GGG | 0.512525 | 7.3:-11637133 | None:intergenic |
| TAATTTGCAGCCAAGGTATG+TGG | 0.513757 | 7.3:+11636652 | MS.gene22417:intron |
| TTGCTGCGGAGGAAGTTTGA+TGG | 0.514446 | 7.3:+11636776 | MS.gene22417:CDS |
| TGCTTCTCGAGAGATGGATC+AGG | 0.518523 | 7.3:-11633574 | None:intergenic |
| GGTGAGTCAGTTGCAGATCA+AGG | 0.527024 | 7.3:+11637139 | MS.gene22417:CDS |
| CCGAAATTGAATCCACCACT+AGG | 0.528558 | 7.3:+11633665 | MS.gene22417:CDS |
| ACTTGATTAACCACATACCT+TGG | 0.535246 | 7.3:-11636662 | None:intergenic |
| TAGCACATCAATCTGAGACT+TGG | 0.536345 | 7.3:-11634185 | None:intergenic |
| AAGAAGCCGAGGAAATGCTT+GGG | 0.541712 | 7.3:+11634445 | MS.gene22417:CDS |
| TAGATTGAGCATTCGGAATG+CGG | 0.549962 | 7.3:-11636744 | None:intergenic |
| TTGCAGATCAAGGAATCAAA+GGG | 0.552447 | 7.3:+11637149 | MS.gene22417:CDS |
| GTTGCAGATCAAGGAATCAA+AGG | 0.555080 | 7.3:+11637148 | MS.gene22417:CDS |
| TGGTTAATCAAGTAACAGCT+GGG | 0.555939 | 7.3:+11636672 | MS.gene22417:CDS |
| GATGTTGAAGACTACCTAGT+TGG | 0.566972 | 7.3:+11635727 | MS.gene22417:CDS |
| ATTAGGGGTTTGACACCCAA+TGG | 0.581889 | 7.3:+11637118 | MS.gene22417:CDS |
| CGTACACCCAAGCATTTCCT+CGG | 0.589797 | 7.3:-11634451 | None:intergenic |
| TACTACGATGTTAAGATTAG+GGG | 0.597934 | 7.3:+11637103 | MS.gene22417:CDS |
| CTGGGGACTATGATTGTCCA+AGG | 0.604732 | 7.3:+11636690 | MS.gene22417:CDS |
| AGCATACATAAGCCTAGTGG+TGG | 0.606206 | 7.3:-11633677 | None:intergenic |
| TCTACATAATGTAGGTATCA+CGG | 0.616208 | 7.3:+11634339 | MS.gene22417:intron |
| TACGAAATGATTTGCTGCGG+AGG | 0.616264 | 7.3:+11636765 | MS.gene22417:CDS |
| GGATTCAATTTCGGAAACAA+CGG | 0.617107 | 7.3:-11633656 | None:intergenic |
| AATCACCTATAGTATTGACC+AGG | 0.622785 | 7.3:-11634250 | None:intergenic |
| ACTTAGAATACTCACCAACT+AGG | 0.632609 | 7.3:-11635741 | None:intergenic |
| GGGAATTGGTTACCTGGAGT+AGG | 0.636577 | 7.3:-11633727 | None:intergenic |
| TCAACATCTAGATTGAACTC+TGG | 0.636901 | 7.3:-11635712 | None:intergenic |
| ATCTACGAAATGATTTGCTG+CGG | 0.637645 | 7.3:+11636762 | MS.gene22417:CDS |
| TCTCAAACACAAAGAAGCCG+AGG | 0.669711 | 7.3:+11634434 | MS.gene22417:CDS |
| GGTTAATCAAGTAACAGCTG+GGG | 0.727745 | 7.3:+11636673 | MS.gene22417:CDS |
| ACTAGCATACATAAGCCTAG+TGG | 0.728523 | 7.3:-11633680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAATTTATATTATTT+GGG | + | chr7.3:11634542-11634561 | MS.gene22417:intron | 0.0% |
| !!! | TTTTATAAATTTATATTATT+TGG | + | chr7.3:11634541-11634560 | MS.gene22417:intron | 0.0% |
| !! | ATGATTATCATAAAAAATAT+GGG | + | chr7.3:11635932-11635951 | MS.gene22417:intron | 10.0% |
| !! | TATGATAATCATATTTAAAT+TGG | - | chr7.3:11635924-11635943 | None:intergenic | 10.0% |
| !! | TATGATTATCATAAAAAATA+TGG | + | chr7.3:11635931-11635950 | MS.gene22417:intron | 10.0% |
| !!! | AAAAAATATGTGATTTTATT+AGG | + | chr7.3:11633907-11633926 | MS.gene22417:intron | 10.0% |
| !! | AAATGTAATTGCTTAAATTA+GGG | - | chr7.3:11633773-11633792 | None:intergenic | 15.0% |
| !! | ATAAATTTATATTATTTGGG+TGG | + | chr7.3:11634545-11634564 | MS.gene22417:intron | 15.0% |
| !! | TAAATTTATATTATTTGGGT+GGG | + | chr7.3:11634546-11634565 | MS.gene22417:intron | 15.0% |
| !!! | CTTTTTTAATCTATAACAAA+CGG | + | chr7.3:11634076-11634095 | MS.gene22417:intron | 15.0% |
| !!! | TAATTGTTTTTTTGTTTGAA+TGG | + | chr7.3:11635776-11635795 | MS.gene22417:intron | 15.0% |
| !!! | TTTTGCACTTTATTTTTTTT+AGG | + | chr7.3:11635866-11635885 | MS.gene22417:intron | 15.0% |
| !!! | TTTTTTAATCTATAACAAAC+GGG | + | chr7.3:11634077-11634096 | MS.gene22417:intron | 15.0% |
| !! | AAAAAATAAAGTGCAAAAAG+AGG | - | chr7.3:11635864-11635883 | None:intergenic | 20.0% |
| !! | AATATGATTATCATCTAGAA+AGG | + | chr7.3:11636170-11636189 | MS.gene22417:intron | 20.0% |
| !! | ATAAAACCATGTTATCTTTA+AGG | + | chr7.3:11636598-11636617 | MS.gene22417:intron | 20.0% |
| !! | CAATTTATTCATAATCACTA+CGG | - | chr7.3:11635562-11635581 | None:intergenic | 20.0% |
| !! | GAAATGTAATTGCTTAAATT+AGG | - | chr7.3:11633774-11633793 | None:intergenic | 20.0% |
| !!! | AAAAACTTTAAAACATTCCT+TGG | - | chr7.3:11636710-11636729 | None:intergenic | 20.0% |
| !!! | ATAGTCAATTCAAATTTTAC+AGG | + | chr7.3:11636372-11636391 | MS.gene22417:intron | 20.0% |
| !!! | ATTTATTTAGAGAGTATGTT+CGG | + | chr7.3:11636263-11636282 | MS.gene22417:intron | 20.0% |
| !!! | TATTACAGTTTGTACATTTT+AGG | - | chr7.3:11634751-11634770 | None:intergenic | 20.0% |
| !!! | TCAATAAACTTTGAAGTTAA+TGG | + | chr7.3:11635485-11635504 | MS.gene22417:intron | 20.0% |
| !!! | TTAATGTGATTTTTGACATT+TGG | + | chr7.3:11634143-11634162 | MS.gene22417:intron | 20.0% |
| !!! | TTTATTGATTTTTGTTATGC+AGG | + | chr7.3:11636414-11636433 | MS.gene22417:intron | 20.0% |
| !!! | TTTTCGTAAAACTCATTTTT+AGG | + | chr7.3:11634032-11634051 | MS.gene22417:intron | 20.0% |
| ! | AAAAGATGTTATCCAAATAG+TGG | - | chr7.3:11637036-11637055 | None:intergenic | 25.0% |
| ! | AACACGAAAACATATACTTA+TGG | - | chr7.3:11634103-11634122 | None:intergenic | 25.0% |
| ! | AATATAAAACCTTCCTACAA+GGG | + | chr7.3:11634767-11634786 | MS.gene22417:intron | 25.0% |
| ! | ACCAAGATAATCAAATGATA+TGG | + | chr7.3:11636233-11636252 | MS.gene22417:intron | 25.0% |
| ! | ACCATATCATTTGATTATCT+TGG | - | chr7.3:11636237-11636256 | None:intergenic | 25.0% |
| ! | ATCAACCTGTAAAAAAAAGT+AGG | + | chr7.3:11636493-11636512 | MS.gene22417:intron | 25.0% |
| ! | CAAAGATTTACTAGATTACT+AGG | - | chr7.3:11636978-11636997 | None:intergenic | 25.0% |
| ! | GCTTCTTATGTCAATTAATT+AGG | + | chr7.3:11635061-11635080 | MS.gene22417:intron | 25.0% |
| ! | TAATATAAAACCTTCCTACA+AGG | + | chr7.3:11634766-11634785 | MS.gene22417:intron | 25.0% |
| ! | TATGCATTTCATTATGACAA+AGG | + | chr7.3:11634697-11634716 | MS.gene22417:intron | 25.0% |
| ! | TGAAGTAAACGTTAACATTA+TGG | - | chr7.3:11635622-11635641 | None:intergenic | 25.0% |
| ! | TGCTAATACAACTATAAATG+TGG | - | chr7.3:11635260-11635279 | None:intergenic | 25.0% |
| ! | TTACTACGATGTTAAGATTA+GGG | + | chr7.3:11637102-11637121 | MS.gene22417:CDS | 25.0% |
| ! | TTGAAGTTAATGGTTTATGT+TGG | + | chr7.3:11635495-11635514 | MS.gene22417:intron | 25.0% |
| ! | TTTAAAGAAGAAGAATGAGA+GGG | - | chr7.3:11633750-11633769 | None:intergenic | 25.0% |
| ! | TTTACTACGATGTTAAGATT+AGG | + | chr7.3:11637101-11637120 | MS.gene22417:CDS | 25.0% |
| !! | AGCTATTGTTCTAAATCAAA+TGG | - | chr7.3:11636090-11636109 | None:intergenic | 25.0% |
| !! | ATTAAATCTTCCAACCTTTT+TGG | + | chr7.3:11635400-11635419 | MS.gene22417:intron | 25.0% |
| !! | CGCAATGTTTATAACTATTT+TGG | + | chr7.3:11636526-11636545 | MS.gene22417:intron | 25.0% |
| !! | CTCTTTTCTTTTCTTTTTGT+TGG | + | chr7.3:11635596-11635615 | MS.gene22417:intron | 25.0% |
| !! | TATTCTGTCTTTTCTTTTTG+TGG | + | chr7.3:11634296-11634315 | MS.gene22417:intron | 25.0% |
| !! | TCTATCCATTCTAAAAAGAA+GGG | + | chr7.3:11635428-11635447 | MS.gene22417:intron | 25.0% |
| !! | TCTTTTCCTTAAAGATAACA+TGG | - | chr7.3:11636607-11636626 | None:intergenic | 25.0% |
| !! | TGTTGTTTAAACATCTAACT+GGG | + | chr7.3:11635347-11635366 | MS.gene22417:intron | 25.0% |
| !! | TTCTATCCATTCTAAAAAGA+AGG | + | chr7.3:11635427-11635446 | MS.gene22417:intron | 25.0% |
| !!! | ATGTATTGCTTATTGATTCA+AGG | + | chr7.3:11633831-11633850 | MS.gene22417:intron | 25.0% |
| !!! | TATCTCCTACTTTTTTTTAC+AGG | - | chr7.3:11636501-11636520 | None:intergenic | 25.0% |
| !!! | TGTATTGCTTATTGATTCAA+GGG | + | chr7.3:11633832-11633851 | MS.gene22417:intron | 25.0% |
| !!! | TTGTTGTTTAAACATCTAAC+TGG | + | chr7.3:11635346-11635365 | MS.gene22417:intron | 25.0% |
| !!! | TTGTTTTATGTCCAATGAAT+TGG | + | chr7.3:11636440-11636459 | MS.gene22417:CDS | 25.0% |
| AAAACAAAAGAACTTCATGC+AGG | + | chr7.3:11634797-11634816 | MS.gene22417:intron | 30.0% | |
| ACAACAAGGAGAAAAAATGT+TGG | - | chr7.3:11636824-11636843 | None:intergenic | 30.0% | |
| AGAATCATAGGACTTCATAA+TGG | - | chr7.3:11634628-11634647 | None:intergenic | 30.0% | |
| AGCAATACATTGAACATGAA+TGG | - | chr7.3:11633821-11633840 | None:intergenic | 30.0% | |
| ATAGAAATGTCCAAAAAGGT+TGG | - | chr7.3:11635413-11635432 | None:intergenic | 30.0% | |
| ATGGATAGAAATGTCCAAAA+AGG | - | chr7.3:11635417-11635436 | None:intergenic | 30.0% | |
| ATTATGTAGAACCAAACTGT+AGG | - | chr7.3:11634329-11634348 | None:intergenic | 30.0% | |
| CCACTGATGCAAAAAATTAA+TGG | - | chr7.3:11635111-11635130 | None:intergenic | 30.0% | |
| CTTACAAATCTCATAATGCT+AGG | - | chr7.3:11635653-11635672 | None:intergenic | 30.0% | |
| GTTTAAAGAAGAAGAATGAG+AGG | - | chr7.3:11633751-11633770 | None:intergenic | 30.0% | |
| TACATGTGAATAAGTAACAC+AGG | - | chr7.3:11634513-11634532 | None:intergenic | 30.0% | |
| TACCATTTCTTAAGAGAGAT+TGG | + | chr7.3:11636874-11636893 | MS.gene22417:intron | 30.0% | |
| TACTACGATGTTAAGATTAG+GGG | + | chr7.3:11637103-11637122 | MS.gene22417:CDS | 30.0% | |
| TATGAAGAAAACTGTATGCA+TGG | + | chr7.3:11634856-11634875 | MS.gene22417:intron | 30.0% | |
| TCTACATAATGTAGGTATCA+CGG | + | chr7.3:11634339-11634358 | MS.gene22417:intron | 30.0% | |
| TTCACAATGATAGTAACACA+GGG | - | chr7.3:11636847-11636866 | None:intergenic | 30.0% | |
| TTGGCTGCAAATTACAAAAT+AGG | - | chr7.3:11636646-11636665 | None:intergenic | 30.0% | |
| TTTCACAATGATAGTAACAC+AGG | - | chr7.3:11636848-11636867 | None:intergenic | 30.0% | |
| TTTGAGTGAATGAGTGAATA+AGG | + | chr7.3:11635897-11635916 | MS.gene22417:intron | 30.0% | |
| TTTGTTTGAATGGAATGCAT+TGG | + | chr7.3:11635786-11635805 | MS.gene22417:intron | 30.0% | |
| ! | AAACTTCTTCGACTTTTCTT+AGG | - | chr7.3:11637084-11637103 | None:intergenic | 30.0% |
| ! | CTATCCATTCTAAAAAGAAG+GGG | + | chr7.3:11635429-11635448 | MS.gene22417:intron | 30.0% |
| ! | GTTAACTATTTTGCAGTGAA+TGG | + | chr7.3:11635688-11635707 | MS.gene22417:intron | 30.0% |
| ! | TATCCATTCTAAAAAGAAGG+GGG | + | chr7.3:11635430-11635449 | MS.gene22417:intron | 30.0% |
| ! | TGAACATCACCATTTGATTT+AGG | + | chr7.3:11636312-11636331 | MS.gene22417:intron | 30.0% |
| ! | TGTTTTCTATTTTCCCTTGT+AGG | - | chr7.3:11634783-11634802 | None:intergenic | 30.0% |
| !! | AGTTTGGTTCTACATAATGT+AGG | + | chr7.3:11634331-11634350 | MS.gene22417:intron | 30.0% |
| !! | GTATTGCTTATTGATTCAAG+GGG | + | chr7.3:11633833-11633852 | MS.gene22417:intron | 30.0% |
| !! | TATTTTGTAATTTGCAGCCA+AGG | + | chr7.3:11636645-11636664 | MS.gene22417:intron | 30.0% |
| !!! | CCATTAATTTTTTGCATCAG+TGG | + | chr7.3:11635108-11635127 | MS.gene22417:intron | 30.0% |
| !!! | GCTCTAGCTTTTTTTAATCA+AGG | + | chr7.3:11636341-11636360 | MS.gene22417:intron | 30.0% |
| AATCTCATAATGCTAGGAAC+AGG | - | chr7.3:11635647-11635666 | None:intergenic | 35.0% | |
| ACTACTCCAGACTGAAATAA+AGG | - | chr7.3:11635026-11635045 | None:intergenic | 35.0% | |
| ACTTAGAATACTCACCAACT+AGG | - | chr7.3:11635744-11635763 | None:intergenic | 35.0% | |
| ACTTGATTAACCACATACCT+TGG | - | chr7.3:11636665-11636684 | None:intergenic | 35.0% | |
| AGAAAACTGTATGCATGGAT+TGG | + | chr7.3:11634861-11634880 | MS.gene22417:intron | 35.0% | |
| AGCAAGACAATCAAACGATA+TGG | + | chr7.3:11635993-11636012 | MS.gene22417:intron | 35.0% | |
| AGGAGAAAAAATGTTGGACA+AGG | - | chr7.3:11636818-11636837 | None:intergenic | 35.0% | |
| ATAATCACTACGGACATGAA+TGG | - | chr7.3:11635552-11635571 | None:intergenic | 35.0% | |
| ATAGAGTCTGAATCTCTTTC+AGG | + | chr7.3:11636203-11636222 | MS.gene22417:intron | 35.0% | |
| ATTCAACTCAGACTCTTACT+GGG | - | chr7.3:11636153-11636172 | None:intergenic | 35.0% | |
| ATTGCAACTGCTCTAACATT+TGG | + | chr7.3:11634965-11634984 | MS.gene22417:intron | 35.0% | |
| CAGAATACACAGAAGTTCAT+CGG | - | chr7.3:11634283-11634302 | None:intergenic | 35.0% | |
| CATTTCGTAGATTGAGCATT+CGG | - | chr7.3:11636754-11636773 | None:intergenic | 35.0% | |
| CTACTCCAGACTGAAATAAA+GGG | - | chr7.3:11635025-11635044 | None:intergenic | 35.0% | |
| GACCAATCTCTCTTAAGAAA+TGG | - | chr7.3:11636879-11636898 | None:intergenic | 35.0% | |
| GATATCCTGGTCAATACTAT+AGG | + | chr7.3:11634245-11634264 | MS.gene22417:CDS | 35.0% | |
| GGATTCAATTTCGGAAACAA+CGG | - | chr7.3:11633659-11633678 | None:intergenic | 35.0% | |
| TAATCACTACGGACATGAAT+GGG | - | chr7.3:11635551-11635570 | None:intergenic | 35.0% | |
| TAGAGTCTGAATCTCTTTCA+GGG | + | chr7.3:11636204-11636223 | MS.gene22417:intron | 35.0% | |
| TATCTTCCTAATGTGATGTG+CGG | + | chr7.3:11634995-11635014 | MS.gene22417:intron | 35.0% | |
| TATTCAACTCAGACTCTTAC+TGG | - | chr7.3:11636154-11636173 | None:intergenic | 35.0% | |
| TCAACATCTAGATTGAACTC+TGG | - | chr7.3:11635715-11635734 | None:intergenic | 35.0% | |
| TGGTTAATCAAGTAACAGCT+GGG | + | chr7.3:11636672-11636691 | MS.gene22417:CDS | 35.0% | |
| TTAGCTGTACAGATTTCACA+TGG | + | chr7.3:11634829-11634848 | MS.gene22417:intron | 35.0% | |
| TTGCAACTGCTCTAACATTT+GGG | + | chr7.3:11634966-11634985 | MS.gene22417:intron | 35.0% | |
| TTGCAGATCAAGGAATCAAA+GGG | + | chr7.3:11637149-11637168 | MS.gene22417:CDS | 35.0% | |
| ! | ATTCTAAAAAGAAGGGGGAT+TGG | + | chr7.3:11635435-11635454 | MS.gene22417:intron | 35.0% |
| ! | CAAATTTTACAGGCTTGCAA+CGG | + | chr7.3:11636382-11636401 | MS.gene22417:intron | 35.0% |
| ! | GAAATATTGACTAGAGAGAC+AGG | + | chr7.3:11636554-11636573 | MS.gene22417:intron | 35.0% |
| ! | GGATAACATCTTTTCACTGT+TGG | + | chr7.3:11637042-11637061 | MS.gene22417:intron | 35.0% |
| ! | TTCTAAAAAGAAGGGGGATT+GGG | + | chr7.3:11635436-11635455 | MS.gene22417:intron | 35.0% |
| ! | TTCTATTTTCCCTTGTAGGA+AGG | - | chr7.3:11634779-11634798 | None:intergenic | 35.0% |
| !! | AAGAGTGCTTACCAATTCAT+TGG | - | chr7.3:11636454-11636473 | None:intergenic | 35.0% |
| !! | AAGCAACTTGCTGATATTCT+TGG | + | chr7.3:11634220-11634239 | MS.gene22417:CDS | 35.0% |
| !! | AATCACCTATAGTATTGACC+AGG | - | chr7.3:11634253-11634272 | None:intergenic | 35.0% |
| !! | AATCCCCCTTCTTTTTAGAA+TGG | - | chr7.3:11635436-11635455 | None:intergenic | 35.0% |
| !! | ATCTACGAAATGATTTGCTG+CGG | + | chr7.3:11636762-11636781 | MS.gene22417:CDS | 35.0% |
| !! | GTTCTAAAACATAGTTCTCC+CGG | - | chr7.3:11635309-11635328 | None:intergenic | 35.0% |
| !! | TTGGATAGAGCTTTTAGAGA+AGG | + | chr7.3:11634162-11634181 | MS.gene22417:intron | 35.0% |
| AATGTAGGTATCACGGTGAT+TGG | + | chr7.3:11634346-11634365 | MS.gene22417:intron | 40.0% | |
| ACTAGCATACATAAGCCTAG+TGG | - | chr7.3:11633683-11633702 | None:intergenic | 40.0% | |
| AGAACTCATCTCGAACAATC+TGG | + | chr7.3:11633610-11633629 | MS.gene22417:CDS | 40.0% | |
| AGACAATCAAACGATATGGC+TGG | + | chr7.3:11635997-11636016 | MS.gene22417:intron | 40.0% | |
| AGCTAGACGCCTAAATCAAA+TGG | - | chr7.3:11636324-11636343 | None:intergenic | 40.0% | |
| ATAGTAACACAGGGACAACA+AGG | - | chr7.3:11636838-11636857 | None:intergenic | 40.0% | |
| ATCTTCCTAATGTGATGTGC+GGG | + | chr7.3:11634996-11635015 | MS.gene22417:intron | 40.0% | |
| CTGAATCTCTTTCAGGGTAA+AGG | + | chr7.3:11636210-11636229 | MS.gene22417:intron | 40.0% | |
| GAAGAAGAATGAGAGGGAAT+TGG | - | chr7.3:11633744-11633763 | None:intergenic | 40.0% | |
| GATATTCTTGGAGGATATCC+TGG | + | chr7.3:11634232-11634251 | MS.gene22417:CDS | 40.0% | |
| GATGTTGAAGACTACCTAGT+TGG | + | chr7.3:11635727-11635746 | MS.gene22417:CDS | 40.0% | |
| GGTTAATCAAGTAACAGCTG+GGG | + | chr7.3:11636673-11636692 | MS.gene22417:CDS | 40.0% | |
| GTGGTTAATCAAGTAACAGC+TGG | + | chr7.3:11636671-11636690 | MS.gene22417:CDS | 40.0% | |
| GTTGCAGATCAAGGAATCAA+AGG | + | chr7.3:11637148-11637167 | MS.gene22417:CDS | 40.0% | |
| GTTGGCATCTTTCCACTATT+TGG | + | chr7.3:11637021-11637040 | MS.gene22417:intron | 40.0% | |
| GTTGTATTAGCATGCAATGC+CGG | + | chr7.3:11635268-11635287 | MS.gene22417:intron | 40.0% | |
| TAGATTACTAGGAAGACACG+AGG | - | chr7.3:11636967-11636986 | None:intergenic | 40.0% | |
| TAGATTGAGCATTCGGAATG+CGG | - | chr7.3:11636747-11636766 | None:intergenic | 40.0% | |
| TCCTATGATTCTAAGCCGTA+GGG | + | chr7.3:11634636-11634655 | MS.gene22417:intron | 40.0% | |
| TCTAAAAAGAAGGGGGATTG+GGG | + | chr7.3:11635437-11635456 | MS.gene22417:intron | 40.0% | |
| TGCAACTGCTCTAACATTTG+GGG | + | chr7.3:11634967-11634986 | MS.gene22417:intron | 40.0% | |
| TGTATGCACTGCTATCTGTT+TGG | + | chr7.3:11636999-11637018 | MS.gene22417:intron | 40.0% | |
| TTGACATACGCACACATACA+AGG | - | chr7.3:11634574-11634593 | None:intergenic | 40.0% | |
| ! | AACATCTTTTCACTGTTGGC+AGG | + | chr7.3:11637046-11637065 | MS.gene22417:intron | 40.0% |
| ! | AGTCTGGAGTAGTAAGATCA+AGG | + | chr7.3:11635033-11635052 | MS.gene22417:intron | 40.0% |
| ! | CAATAGCTGTAGCTTTTGTC+TGG | + | chr7.3:11636102-11636121 | MS.gene22417:intron | 40.0% |
| ! | GTCTGGAGTAGTAAGATCAA+GGG | + | chr7.3:11635034-11635053 | MS.gene22417:intron | 40.0% |
| ! | TAACTGGGAGAACTGTGTTT+TGG | + | chr7.3:11635362-11635381 | MS.gene22417:intron | 40.0% |
| ! | TAATTTGCAGCCAAGGTATG+TGG | + | chr7.3:11636652-11636671 | MS.gene22417:intron | 40.0% |
| ! | TAGCACATCAATCTGAGACT+TGG | - | chr7.3:11634188-11634207 | None:intergenic | 40.0% |
| !! | CAACTTGCTGATATTCTTGG+AGG | + | chr7.3:11634223-11634242 | MS.gene22417:CDS | 40.0% |
| !! | CCTAGTGGTGGATTCAATTT+CGG | - | chr7.3:11633668-11633687 | None:intergenic | 40.0% |
| !!! | CTGTGTTTTGGAACTTCTCT+TGG | + | chr7.3:11635374-11635393 | MS.gene22417:intron | 40.0% |
| AAAGAAGCCGAGGAAATGCT+TGG | + | chr7.3:11634444-11634463 | MS.gene22417:CDS | 45.0% | |
| AAGAAGCCGAGGAAATGCTT+GGG | + | chr7.3:11634445-11634464 | MS.gene22417:CDS | 45.0% | |
| AGCATACATAAGCCTAGTGG+TGG | - | chr7.3:11633680-11633699 | None:intergenic | 45.0% | |
| ATGAGAGGGAATTGGTTACC+TGG | - | chr7.3:11633736-11633755 | None:intergenic | 45.0% | |
| ATTAGGGGTTTGACACCCAA+TGG | + | chr7.3:11637118-11637137 | MS.gene22417:CDS | 45.0% | |
| CATTTACCCTGAAAGACCTG+CGG | - | chr7.3:11635973-11635992 | None:intergenic | 45.0% | |
| CCATCTCTCGAGAAGCAATT+CGG | + | chr7.3:11633580-11633599 | MS.gene22417:CDS | 45.0% | |
| CCGAAATTGAATCCACCACT+AGG | + | chr7.3:11633665-11633684 | MS.gene22417:CDS | 45.0% | |
| CCGGTGCTTAAACATCTAAC+CGG | + | chr7.3:11635287-11635306 | MS.gene22417:intron | 45.0% | |
| CCGGTTAGATGTTTAAGCAC+CGG | - | chr7.3:11635290-11635309 | None:intergenic | 45.0% | |
| CCTATGATTCTAAGCCGTAG+GGG | + | chr7.3:11634637-11634656 | MS.gene22417:intron | 45.0% | |
| CGGAAACAACGGTTCGAATT+CGG | - | chr7.3:11633648-11633667 | None:intergenic | 45.0% | |
| CGGTGCTTAAACATCTAACC+GGG | + | chr7.3:11635288-11635307 | MS.gene22417:intron | 45.0% | |
| GTCCTATGATTCTAAGCCGT+AGG | + | chr7.3:11634635-11634654 | MS.gene22417:intron | 45.0% | |
| GTGGTCTGTAACCTACAGTT+TGG | + | chr7.3:11634315-11634334 | MS.gene22417:intron | 45.0% | |
| TCTCAAACACAAAGAAGCCG+AGG | + | chr7.3:11634434-11634453 | MS.gene22417:CDS | 45.0% | |
| TGCACTGCTATCTGTTTGGT+TGG | + | chr7.3:11637003-11637022 | MS.gene22417:intron | 45.0% | |
| ! | ATCTGCAACTGACTCACCAT+TGG | - | chr7.3:11637137-11637156 | None:intergenic | 45.0% |
| ! | GGTTGCCCTTTATTTCAGTC+TGG | + | chr7.3:11635017-11635036 | MS.gene22417:intron | 45.0% |
| ! | TCTGCAACTGACTCACCATT+GGG | - | chr7.3:11637136-11637155 | None:intergenic | 45.0% |
| !! | TACGAAATGATTTGCTGCGG+AGG | + | chr7.3:11636765-11636784 | MS.gene22417:CDS | 45.0% |
| !!! | TTTTGCGCACTGGCTTGAAA+CGG | + | chr7.3:11634404-11634423 | MS.gene22417:CDS | 45.0% |
| ACTAGAGAGACAGGCATGCA+TGG | + | chr7.3:11636563-11636582 | MS.gene22417:intron | 50.0% | |
| ATTGAGTCCACAGTCCCCTA+CGG | - | chr7.3:11634654-11634673 | None:intergenic | 50.0% | |
| CCCCTACGGCTTAGAATCAT+AGG | - | chr7.3:11634640-11634659 | None:intergenic | 50.0% | |
| CCGAATTGCTTCTCGAGAGA+TGG | - | chr7.3:11633583-11633602 | None:intergenic | 50.0% | |
| CGTACACCCAAGCATTTCCT+CGG | - | chr7.3:11634454-11634473 | None:intergenic | 50.0% | |
| CTGGGGACTATGATTGTCCA+AGG | + | chr7.3:11636690-11636709 | MS.gene22417:CDS | 50.0% | |
| GGGAATTGGTTACCTGGAGT+AGG | - | chr7.3:11633730-11633749 | None:intergenic | 50.0% | |
| GGTGAGTCAGTTGCAGATCA+AGG | + | chr7.3:11637139-11637158 | MS.gene22417:CDS | 50.0% | |
| TAGAGTCCGCAGGTCTTTCA+GGG | + | chr7.3:11635964-11635983 | MS.gene22417:intron | 50.0% | |
| TGCTTCTCGAGAGATGGATC+AGG | - | chr7.3:11633577-11633596 | None:intergenic | 50.0% | |
| TTAGAGTCCGCAGGTCTTTC+AGG | + | chr7.3:11635963-11635982 | MS.gene22417:intron | 50.0% | |
| TTGCTGCGGAGGAAGTTTGA+TGG | + | chr7.3:11636776-11636795 | MS.gene22417:CDS | 50.0% | |
| ! | ACGGACATGAATGGGTTCTG+AGG | - | chr7.3:11635543-11635562 | None:intergenic | 50.0% |
| !! | TTTGCGCACTGGCTTGAAAC+GGG | + | chr7.3:11634405-11634424 | MS.gene22417:CDS | 50.0% |
| !!! | CTATGCTAGCTTTTGCGCAC+TGG | + | chr7.3:11634394-11634413 | MS.gene22417:CDS | 50.0% |
| CATCACTCTCGTCCTACTCC+AGG | + | chr7.3:11633715-11633734 | MS.gene22417:CDS | 55.0% | |
| GGCAACCCGCACATCACATT+AGG | - | chr7.3:11635004-11635023 | None:intergenic | 55.0% | |
| GGTTCGAATTCGGTCGCGTA+AGG | - | chr7.3:11633638-11633657 | None:intergenic | 55.0% | |
| GTGTAGCAGTTAGAGTCCGC+AGG | + | chr7.3:11635954-11635973 | MS.gene22417:intron | 55.0% | |
| TTCTAAGCCGTAGGGGACTG+TGG | + | chr7.3:11634644-11634663 | MS.gene22417:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11633556 | 11637180 | 11633556 | ID=MS.gene22417 |
| chr7.3 | mRNA | 11633556 | 11637180 | 11633556 | ID=MS.gene22417.t1;Parent=MS.gene22417 |
| chr7.3 | exon | 11633556 | 11633736 | 11633556 | ID=MS.gene22417.t1.exon1;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11633556 | 11633736 | 11633556 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11634170 | 11634266 | 11634170 | ID=MS.gene22417.t1.exon2;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11634170 | 11634266 | 11634170 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11634353 | 11634468 | 11634353 | ID=MS.gene22417.t1.exon3;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11634353 | 11634468 | 11634353 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11635704 | 11635748 | 11635704 | ID=MS.gene22417.t1.exon4;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11635704 | 11635748 | 11635704 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11636436 | 11636461 | 11636436 | ID=MS.gene22417.t1.exon5;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11636436 | 11636461 | 11636436 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11636662 | 11636797 | 11636662 | ID=MS.gene22417.t1.exon6;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11636662 | 11636797 | 11636662 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| chr7.3 | exon | 11637068 | 11637180 | 11637068 | ID=MS.gene22417.t1.exon7;Parent=MS.gene22417.t1 |
| chr7.3 | CDS | 11637068 | 11637180 | 11637068 | ID=cds.MS.gene22417.t1;Parent=MS.gene22417.t1 |
| Gene Sequence |
| Protein sequence |
