Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012051.t1 | XP_003629385.1 | 91.3 | 126 | 11 | 0 | 1 | 126 | 70 | 195 | 5.40E-48 | 200.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012051.t1 | P41189 | 57.7 | 78 | 33 | 0 | 44 | 121 | 43 | 120 | 4.3e-14 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012051.t1 | G7LD30 | 91.3 | 126 | 11 | 0 | 1 | 126 | 70 | 195 | 3.9e-48 | 200.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene012051 | MS.gene89107 | PPI |
MS.gene22417 | MS.gene012051 | PPI |
MS.gene012051 | MS.gene61205 | PPI |
MS.gene012051 | MS.gene007531 | PPI |
MS.gene36292 | MS.gene012051 | PPI |
MS.gene007416 | MS.gene012051 | PPI |
MS.gene20079 | MS.gene012051 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012051.t1 | MTR_8g076780 | 99.206 | 126 | 1 | 0 | 1 | 126 | 70 | 195 | 3.56e-81 | 236 |
MS.gene012051.t1 | MTR_2g031960 | 53.043 | 115 | 52 | 1 | 14 | 126 | 41 | 155 | 1.41e-30 | 107 |
MS.gene012051.t1 | MTR_2g031760 | 61.386 | 101 | 34 | 1 | 26 | 126 | 95 | 190 | 1.63e-29 | 105 |
MS.gene012051.t1 | MTR_2g064300 | 51.304 | 115 | 47 | 2 | 20 | 126 | 103 | 216 | 7.90e-27 | 99.4 |
MS.gene012051.t1 | MTR_7g053520 | 55.046 | 109 | 40 | 2 | 26 | 126 | 110 | 217 | 5.40e-26 | 97.4 |
MS.gene012051.t1 | MTR_6g006060 | 45.714 | 70 | 38 | 0 | 56 | 125 | 111 | 180 | 7.83e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012051.t1 | AT4G36420 | 61.111 | 126 | 42 | 3 | 1 | 126 | 61 | 179 | 9.15e-39 | 129 |
MS.gene012051.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012051.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012051.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012051.t1 | AT1G70190 | 51.639 | 122 | 53 | 3 | 6 | 126 | 92 | 208 | 1.33e-24 | 93.6 |
MS.gene012051.t1 | AT1G70190 | 51.639 | 122 | 53 | 3 | 6 | 126 | 92 | 208 | 1.33e-24 | 93.6 |
MS.gene012051.t1 | AT4G37660 | 69.118 | 68 | 21 | 0 | 59 | 126 | 100 | 167 | 2.56e-24 | 91.7 |
MS.gene012051.t1 | AT2G03130 | 48.315 | 89 | 42 | 1 | 38 | 126 | 7 | 91 | 2.52e-15 | 67.0 |
MS.gene012051.t1 | AT3G27830 | 52.055 | 73 | 35 | 0 | 53 | 125 | 118 | 190 | 3.27e-15 | 68.6 |
MS.gene012051.t1 | AT3G27830 | 52.055 | 73 | 35 | 0 | 53 | 125 | 118 | 190 | 3.27e-15 | 68.6 |
MS.gene012051.t1 | AT3G27850 | 52.055 | 73 | 35 | 0 | 53 | 125 | 114 | 186 | 3.53e-15 | 68.6 |
MS.gene012051.t1 | AT3G27840 | 43.210 | 81 | 46 | 0 | 45 | 125 | 112 | 192 | 1.64e-13 | 64.3 |
Find 36 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAGTAATGCGAGAGAAAA+AGG | 0.238846 | 8.1:-31154079 | MS.gene012051:CDS |
GGGGATTATTGCTAAGTTAA+AGG | 0.252904 | 8.1:-31153761 | MS.gene012051:CDS |
TGGTTCCTGGAATGGGAATA+AGG | 0.262636 | 8.1:-31154026 | MS.gene012051:CDS |
AGGTGTAGGTGGAGGGAAAG+GGG | 0.337630 | 8.1:-31153992 | MS.gene012051:CDS |
TTAAAGTTATTAAAGAAGTT+AGG | 0.349767 | 8.1:-31153876 | MS.gene012051:CDS |
GGTTGGTGCAAAAGCTTCTA+TGG | 0.362512 | 8.1:-31153737 | MS.gene012051:CDS |
GGTTCCTGGAATGGGAATAA+GGG | 0.368867 | 8.1:-31154025 | MS.gene012051:CDS |
GCGTTTGATGTGAAGCTTGA+TGG | 0.371046 | 8.1:-31153919 | MS.gene012051:CDS |
ATTCCCCTTATTCCCATTCC+AGG | 0.371516 | 8.1:+31154021 | None:intergenic |
GGTGTAGGTGGAGGGAAAGG+GGG | 0.396694 | 8.1:-31153991 | MS.gene012051:CDS |
ATTATGATGTTGATGGTTCC+TGG | 0.398854 | 8.1:-31154039 | MS.gene012051:CDS |
GCTTCCGATTATGATGTTGA+TGG | 0.408175 | 8.1:-31154046 | MS.gene012051:CDS |
AGAGGTGTAGGTGGAGGGAA+AGG | 0.431861 | 8.1:-31153994 | MS.gene012051:CDS |
GTTGAAGGAAGCTAAGGATT+TGG | 0.435359 | 8.1:-31153836 | MS.gene012051:CDS |
GGAACCATCAACATCATAAT+CGG | 0.459221 | 8.1:+31154042 | None:intergenic |
GAGGTGTAGGTGGAGGGAAA+GGG | 0.479166 | 8.1:-31153993 | MS.gene012051:CDS |
ATGCCGAGAGGTGTAGGTGG+AGG | 0.492930 | 8.1:-31154000 | MS.gene012051:CDS |
GATGTTGATGGTTCCTGGAA+TGG | 0.504794 | 8.1:-31154034 | MS.gene012051:CDS |
ATTGCTAAGTTAAAGGAGGT+TGG | 0.508274 | 8.1:-31153754 | MS.gene012051:CDS |
TTTGGGGTTGAAGGAAGCTA+AGG | 0.515112 | 8.1:-31153842 | MS.gene012051:CDS |
TGTGACGAAAGAAGAGGCCG+AGG | 0.536944 | 8.1:-31153782 | MS.gene012051:CDS |
ATGTTGATGGTTCCTGGAAT+GGG | 0.541612 | 8.1:-31154033 | MS.gene012051:CDS |
AGGGGAATGCCGAGAGGTGT+AGG | 0.541839 | 8.1:-31154006 | MS.gene012051:CDS |
GAAGGAAGCTAAGGATTTGG+TGG | 0.548600 | 8.1:-31153833 | MS.gene012051:CDS |
TAACTTAGCAATAATCCCCT+CGG | 0.571218 | 8.1:+31153765 | None:intergenic |
GGGTGAGGTGAAGAAAGTTG+AGG | 0.571665 | 8.1:-31153950 | MS.gene012051:CDS |
TTCCCTCCACCTACACCTCT+CGG | 0.576289 | 8.1:+31153997 | None:intergenic |
GATTATTGCTAAGTTAAAGG+AGG | 0.580906 | 8.1:-31153758 | MS.gene012051:CDS |
TGCCGAGAGGTGTAGGTGGA+GGG | 0.581642 | 8.1:-31153999 | MS.gene012051:CDS |
GGAATGCCGAGAGGTGTAGG+TGG | 0.612707 | 8.1:-31154003 | MS.gene012051:CDS |
ACACCTTTCTTCAAAAGCGT+AGG | 0.629486 | 8.1:+31153802 | None:intergenic |
GTGACGAAAGAAGAGGCCGA+GGG | 0.636034 | 8.1:-31153781 | MS.gene012051:CDS |
GTTCCTGGAATGGGAATAAG+GGG | 0.637463 | 8.1:-31154024 | MS.gene012051:CDS |
GAAAGGTGTGACGAAAGAAG+AGG | 0.651585 | 8.1:-31153788 | MS.gene012051:CDS |
TGACGAAAGAAGAGGCCGAG+GGG | 0.703464 | 8.1:-31153780 | MS.gene012051:CDS |
GGAATAAGGGGAATGCCGAG+AGG | 0.729602 | 8.1:-31154012 | MS.gene012051:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAGTTATTAAAGAAGTT+AGG | - | chr8.1:31153946-31153965 | MS.gene012051:CDS | 15.0% |
GATTATTGCTAAGTTAAAGG+AGG | - | chr8.1:31154064-31154083 | MS.gene012051:CDS | 30.0% | |
! | AGTTAGGAGTTTTACTAGTT+TGG | - | chr8.1:31153962-31153981 | MS.gene012051:CDS | 30.0% |
!! | GTTAGGAGTTTTACTAGTTT+GGG | - | chr8.1:31153963-31153982 | MS.gene012051:CDS | 30.0% |
!! | TTAGGAGTTTTACTAGTTTG+GGG | - | chr8.1:31153964-31153983 | MS.gene012051:CDS | 30.0% |
ATTGCTAAGTTAAAGGAGGT+TGG | - | chr8.1:31154068-31154087 | MS.gene012051:CDS | 35.0% | |
GAAGTAATGCGAGAGAAAAA+GGG | - | chr8.1:31153744-31153763 | MS.gene012051:CDS | 35.0% | |
GGAACCATCAACATCATAAT+CGG | + | chr8.1:31153783-31153802 | None:intergenic | 35.0% | |
GGGGATTATTGCTAAGTTAA+AGG | - | chr8.1:31154061-31154080 | MS.gene012051:CDS | 35.0% | |
TAACTTAGCAATAATCCCCT+CGG | + | chr8.1:31154060-31154079 | None:intergenic | 35.0% | |
TGAAGTAATGCGAGAGAAAA+AGG | - | chr8.1:31153743-31153762 | MS.gene012051:CDS | 35.0% | |
!! | ATTATGATGTTGATGGTTCC+TGG | - | chr8.1:31153783-31153802 | MS.gene012051:CDS | 35.0% |
!! | TTTTACTAGTTTGGGGTTGA+AGG | - | chr8.1:31153971-31153990 | MS.gene012051:CDS | 35.0% |
GCTTCCGATTATGATGTTGA+TGG | - | chr8.1:31153776-31153795 | MS.gene012051:CDS | 40.0% | |
GTTGAAGGAAGCTAAGGATT+TGG | - | chr8.1:31153986-31154005 | MS.gene012051:CDS | 40.0% | |
! | ACACCTTTCTTCAAAAGCGT+AGG | + | chr8.1:31154023-31154042 | None:intergenic | 40.0% |
!! | ATGTTGATGGTTCCTGGAAT+GGG | - | chr8.1:31153789-31153808 | MS.gene012051:CDS | 40.0% |
!!! | GAAGCTTGATGGTTTTGATG+CGG | - | chr8.1:31153914-31153933 | MS.gene012051:CDS | 40.0% |
ATTCCCCTTATTCCCATTCC+AGG | + | chr8.1:31153804-31153823 | None:intergenic | 45.0% | |
GAAGGAAGCTAAGGATTTGG+TGG | - | chr8.1:31153989-31154008 | MS.gene012051:CDS | 45.0% | |
GCGTTTGATGTGAAGCTTGA+TGG | - | chr8.1:31153903-31153922 | MS.gene012051:CDS | 45.0% | |
GGTTCCTGGAATGGGAATAA+GGG | - | chr8.1:31153797-31153816 | MS.gene012051:CDS | 45.0% | |
GTTCCTGGAATGGGAATAAG+GGG | - | chr8.1:31153798-31153817 | MS.gene012051:CDS | 45.0% | |
TGGTTCCTGGAATGGGAATA+AGG | - | chr8.1:31153796-31153815 | MS.gene012051:CDS | 45.0% | |
! | GAAAGGTGTGACGAAAGAAG+AGG | - | chr8.1:31154034-31154053 | MS.gene012051:CDS | 45.0% |
! | GGGGTGGTGATAGTGAAAAA+GGG | - | chr8.1:31153850-31153869 | MS.gene012051:CDS | 45.0% |
! | GGGTGGTGATAGTGAAAAAG+GGG | - | chr8.1:31153851-31153870 | MS.gene012051:CDS | 45.0% |
! | GGTGGTGATAGTGAAAAAGG+GGG | - | chr8.1:31153852-31153871 | MS.gene012051:CDS | 45.0% |
! | GGTTGGTGCAAAAGCTTCTA+TGG | - | chr8.1:31154085-31154104 | MS.gene012051:CDS | 45.0% |
! | TGATAGTGAAAAAGGGGGTG+AGG | - | chr8.1:31153857-31153876 | MS.gene012051:CDS | 45.0% |
! | TTTGGGGTTGAAGGAAGCTA+AGG | - | chr8.1:31153980-31153999 | MS.gene012051:CDS | 45.0% |
!! | GATGTTGATGGTTCCTGGAA+TGG | - | chr8.1:31153788-31153807 | MS.gene012051:CDS | 45.0% |
!! | TCGCCTACGCTTTTGAAGAA+AGG | - | chr8.1:31154017-31154036 | MS.gene012051:CDS | 45.0% |
GGGTGAGGTGAAGAAAGTTG+AGG | - | chr8.1:31153872-31153891 | MS.gene012051:CDS | 50.0% | |
! | GGGGGTGGTGATAGTGAAAA+AGG | - | chr8.1:31153849-31153868 | MS.gene012051:CDS | 50.0% |
AGGTGTAGGTGGAGGGAAAG+GGG | - | chr8.1:31153830-31153849 | MS.gene012051:CDS | 55.0% | |
GAGGTGTAGGTGGAGGGAAA+GGG | - | chr8.1:31153829-31153848 | MS.gene012051:CDS | 55.0% | |
GGAATAAGGGGAATGCCGAG+AGG | - | chr8.1:31153810-31153829 | MS.gene012051:CDS | 55.0% | |
GTGACGAAAGAAGAGGCCGA+GGG | - | chr8.1:31154041-31154060 | MS.gene012051:CDS | 55.0% | |
TGACGAAAGAAGAGGCCGAG+GGG | - | chr8.1:31154042-31154061 | MS.gene012051:CDS | 55.0% | |
TGTGACGAAAGAAGAGGCCG+AGG | - | chr8.1:31154040-31154059 | MS.gene012051:CDS | 55.0% | |
TTCCCTCCACCTACACCTCT+CGG | + | chr8.1:31153828-31153847 | None:intergenic | 55.0% | |
! | AGAGGTGTAGGTGGAGGGAA+AGG | - | chr8.1:31153828-31153847 | MS.gene012051:CDS | 55.0% |
GGTGTAGGTGGAGGGAAAGG+GGG | - | chr8.1:31153831-31153850 | MS.gene012051:CDS | 60.0% | |
! | AGGGGAATGCCGAGAGGTGT+AGG | - | chr8.1:31153816-31153835 | MS.gene012051:CDS | 60.0% |
! | ATGCCGAGAGGTGTAGGTGG+AGG | - | chr8.1:31153822-31153841 | MS.gene012051:CDS | 60.0% |
! | GGAATGCCGAGAGGTGTAGG+TGG | - | chr8.1:31153819-31153838 | MS.gene012051:CDS | 60.0% |
! | TGCCGAGAGGTGTAGGTGGA+GGG | - | chr8.1:31153823-31153842 | MS.gene012051:CDS | 60.0% |
GTAGGTGGAGGGAAAGGGGG+TGG | - | chr8.1:31153834-31153853 | MS.gene012051:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 31153732 | 31154112 | 31153732 | ID=MS.gene012051 |
chr8.1 | mRNA | 31153732 | 31154112 | 31153732 | ID=MS.gene012051.t1;Parent=MS.gene012051 |
chr8.1 | exon | 31153732 | 31154112 | 31153732 | ID=MS.gene012051.t1.exon1;Parent=MS.gene012051.t1 |
chr8.1 | CDS | 31153732 | 31154112 | 31153732 | ID=cds.MS.gene012051.t1;Parent=MS.gene012051.t1 |
Gene Sequence |
Protein sequence |