Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012053.t1 | XP_003629385.1 | 91.3 | 126 | 11 | 0 | 1 | 126 | 70 | 195 | 5.40E-48 | 200.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012053.t1 | P41189 | 57.7 | 78 | 33 | 0 | 44 | 121 | 43 | 120 | 4.3e-14 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012053.t1 | G7LD30 | 91.3 | 126 | 11 | 0 | 1 | 126 | 70 | 195 | 3.9e-48 | 200.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene007416 | MS.gene012053 | PPI |
MS.gene20079 | MS.gene012053 | PPI |
MS.gene22417 | MS.gene012053 | PPI |
MS.gene012053 | MS.gene89107 | PPI |
MS.gene012053 | MS.gene61205 | PPI |
MS.gene012053 | MS.gene007531 | PPI |
MS.gene36292 | MS.gene012053 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012053.t1 | MTR_8g076780 | 99.206 | 126 | 1 | 0 | 1 | 126 | 70 | 195 | 3.56e-81 | 236 |
MS.gene012053.t1 | MTR_2g031960 | 53.043 | 115 | 52 | 1 | 14 | 126 | 41 | 155 | 1.41e-30 | 107 |
MS.gene012053.t1 | MTR_2g031760 | 61.386 | 101 | 34 | 1 | 26 | 126 | 95 | 190 | 1.63e-29 | 105 |
MS.gene012053.t1 | MTR_2g064300 | 51.304 | 115 | 47 | 2 | 20 | 126 | 103 | 216 | 7.90e-27 | 99.4 |
MS.gene012053.t1 | MTR_7g053520 | 55.046 | 109 | 40 | 2 | 26 | 126 | 110 | 217 | 5.40e-26 | 97.4 |
MS.gene012053.t1 | MTR_6g006060 | 45.714 | 70 | 38 | 0 | 56 | 125 | 111 | 180 | 7.83e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012053.t1 | AT4G36420 | 61.111 | 126 | 42 | 3 | 1 | 126 | 61 | 179 | 9.15e-39 | 129 |
MS.gene012053.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012053.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012053.t1 | AT3G06040 | 63.441 | 93 | 30 | 1 | 34 | 126 | 98 | 186 | 6.98e-30 | 106 |
MS.gene012053.t1 | AT1G70190 | 51.639 | 122 | 53 | 3 | 6 | 126 | 92 | 208 | 1.33e-24 | 93.6 |
MS.gene012053.t1 | AT1G70190 | 51.639 | 122 | 53 | 3 | 6 | 126 | 92 | 208 | 1.33e-24 | 93.6 |
MS.gene012053.t1 | AT4G37660 | 69.118 | 68 | 21 | 0 | 59 | 126 | 100 | 167 | 2.56e-24 | 91.7 |
MS.gene012053.t1 | AT2G03130 | 48.315 | 89 | 42 | 1 | 38 | 126 | 7 | 91 | 2.52e-15 | 67.0 |
MS.gene012053.t1 | AT3G27830 | 52.055 | 73 | 35 | 0 | 53 | 125 | 118 | 190 | 3.27e-15 | 68.6 |
MS.gene012053.t1 | AT3G27830 | 52.055 | 73 | 35 | 0 | 53 | 125 | 118 | 190 | 3.27e-15 | 68.6 |
MS.gene012053.t1 | AT3G27850 | 52.055 | 73 | 35 | 0 | 53 | 125 | 114 | 186 | 3.53e-15 | 68.6 |
MS.gene012053.t1 | AT3G27840 | 43.210 | 81 | 46 | 0 | 45 | 125 | 112 | 192 | 1.64e-13 | 64.3 |
Find 36 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAGTAATGCGAGAGAAAA+AGG | 0.238846 | 8.1:-31079618 | MS.gene012053:CDS |
GGGGATTATTGCTAAGTTAA+AGG | 0.252904 | 8.1:-31079300 | MS.gene012053:CDS |
TGGTTCCTGGAATGGGAATA+AGG | 0.262636 | 8.1:-31079565 | MS.gene012053:CDS |
AGGTGTAGGTGGAGGGAAAG+GGG | 0.337630 | 8.1:-31079531 | MS.gene012053:CDS |
TTAAAGTTATTAAAGAAGTT+AGG | 0.349767 | 8.1:-31079415 | MS.gene012053:CDS |
GGTTGGTGCAAAAGCTTCTA+TGG | 0.362512 | 8.1:-31079276 | MS.gene012053:CDS |
GGTTCCTGGAATGGGAATAA+GGG | 0.368867 | 8.1:-31079564 | MS.gene012053:CDS |
GCGTTTGATGTGAAGCTTGA+TGG | 0.371046 | 8.1:-31079458 | MS.gene012053:CDS |
ATTCCCCTTATTCCCATTCC+AGG | 0.371516 | 8.1:+31079560 | None:intergenic |
GGTGTAGGTGGAGGGAAAGG+GGG | 0.396694 | 8.1:-31079530 | MS.gene012053:CDS |
ATTATGATGTTGATGGTTCC+TGG | 0.398854 | 8.1:-31079578 | MS.gene012053:CDS |
GCTTCCGATTATGATGTTGA+TGG | 0.408175 | 8.1:-31079585 | MS.gene012053:CDS |
AGAGGTGTAGGTGGAGGGAA+AGG | 0.431861 | 8.1:-31079533 | MS.gene012053:CDS |
GTTGAAGGAAGCTAAGGATT+TGG | 0.435359 | 8.1:-31079375 | MS.gene012053:CDS |
GGAACCATCAACATCATAAT+CGG | 0.459221 | 8.1:+31079581 | None:intergenic |
GAGGTGTAGGTGGAGGGAAA+GGG | 0.479166 | 8.1:-31079532 | MS.gene012053:CDS |
ATGCCGAGAGGTGTAGGTGG+AGG | 0.492930 | 8.1:-31079539 | MS.gene012053:CDS |
GATGTTGATGGTTCCTGGAA+TGG | 0.504794 | 8.1:-31079573 | MS.gene012053:CDS |
ATTGCTAAGTTAAAGGAGGT+TGG | 0.508274 | 8.1:-31079293 | MS.gene012053:CDS |
TTTGGGGTTGAAGGAAGCTA+AGG | 0.515112 | 8.1:-31079381 | MS.gene012053:CDS |
TGTGACGAAAGAAGAGGCCG+AGG | 0.536944 | 8.1:-31079321 | MS.gene012053:CDS |
ATGTTGATGGTTCCTGGAAT+GGG | 0.541612 | 8.1:-31079572 | MS.gene012053:CDS |
AGGGGAATGCCGAGAGGTGT+AGG | 0.541839 | 8.1:-31079545 | MS.gene012053:CDS |
GAAGGAAGCTAAGGATTTGG+TGG | 0.548600 | 8.1:-31079372 | MS.gene012053:CDS |
TAACTTAGCAATAATCCCCT+CGG | 0.571218 | 8.1:+31079304 | None:intergenic |
GGGTGAGGTGAAGAAAGTTG+AGG | 0.571665 | 8.1:-31079489 | MS.gene012053:CDS |
TTCCCTCCACCTACACCTCT+CGG | 0.576289 | 8.1:+31079536 | None:intergenic |
GATTATTGCTAAGTTAAAGG+AGG | 0.580906 | 8.1:-31079297 | MS.gene012053:CDS |
TGCCGAGAGGTGTAGGTGGA+GGG | 0.581642 | 8.1:-31079538 | MS.gene012053:CDS |
GGAATGCCGAGAGGTGTAGG+TGG | 0.612707 | 8.1:-31079542 | MS.gene012053:CDS |
ACACCTTTCTTCAAAAGCGT+AGG | 0.629486 | 8.1:+31079341 | None:intergenic |
GTGACGAAAGAAGAGGCCGA+GGG | 0.636034 | 8.1:-31079320 | MS.gene012053:CDS |
GTTCCTGGAATGGGAATAAG+GGG | 0.637463 | 8.1:-31079563 | MS.gene012053:CDS |
GAAAGGTGTGACGAAAGAAG+AGG | 0.651585 | 8.1:-31079327 | MS.gene012053:CDS |
TGACGAAAGAAGAGGCCGAG+GGG | 0.703464 | 8.1:-31079319 | MS.gene012053:CDS |
GGAATAAGGGGAATGCCGAG+AGG | 0.729602 | 8.1:-31079551 | MS.gene012053:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAGTTATTAAAGAAGTT+AGG | - | chr8.1:31079485-31079504 | MS.gene012053:CDS | 15.0% |
GATTATTGCTAAGTTAAAGG+AGG | - | chr8.1:31079603-31079622 | MS.gene012053:CDS | 30.0% | |
! | AGTTAGGAGTTTTACTAGTT+TGG | - | chr8.1:31079501-31079520 | MS.gene012053:CDS | 30.0% |
!! | GTTAGGAGTTTTACTAGTTT+GGG | - | chr8.1:31079502-31079521 | MS.gene012053:CDS | 30.0% |
!! | TTAGGAGTTTTACTAGTTTG+GGG | - | chr8.1:31079503-31079522 | MS.gene012053:CDS | 30.0% |
ATTGCTAAGTTAAAGGAGGT+TGG | - | chr8.1:31079607-31079626 | MS.gene012053:CDS | 35.0% | |
GAAGTAATGCGAGAGAAAAA+GGG | - | chr8.1:31079283-31079302 | MS.gene012053:CDS | 35.0% | |
GGAACCATCAACATCATAAT+CGG | + | chr8.1:31079322-31079341 | None:intergenic | 35.0% | |
GGGGATTATTGCTAAGTTAA+AGG | - | chr8.1:31079600-31079619 | MS.gene012053:CDS | 35.0% | |
TAACTTAGCAATAATCCCCT+CGG | + | chr8.1:31079599-31079618 | None:intergenic | 35.0% | |
TGAAGTAATGCGAGAGAAAA+AGG | - | chr8.1:31079282-31079301 | MS.gene012053:CDS | 35.0% | |
!! | ATTATGATGTTGATGGTTCC+TGG | - | chr8.1:31079322-31079341 | MS.gene012053:CDS | 35.0% |
!! | TTTTACTAGTTTGGGGTTGA+AGG | - | chr8.1:31079510-31079529 | MS.gene012053:CDS | 35.0% |
GCTTCCGATTATGATGTTGA+TGG | - | chr8.1:31079315-31079334 | MS.gene012053:CDS | 40.0% | |
GTTGAAGGAAGCTAAGGATT+TGG | - | chr8.1:31079525-31079544 | MS.gene012053:CDS | 40.0% | |
! | ACACCTTTCTTCAAAAGCGT+AGG | + | chr8.1:31079562-31079581 | None:intergenic | 40.0% |
!! | ATGTTGATGGTTCCTGGAAT+GGG | - | chr8.1:31079328-31079347 | MS.gene012053:CDS | 40.0% |
!!! | GAAGCTTGATGGTTTTGATG+CGG | - | chr8.1:31079453-31079472 | MS.gene012053:CDS | 40.0% |
ATTCCCCTTATTCCCATTCC+AGG | + | chr8.1:31079343-31079362 | None:intergenic | 45.0% | |
GAAGGAAGCTAAGGATTTGG+TGG | - | chr8.1:31079528-31079547 | MS.gene012053:CDS | 45.0% | |
GCGTTTGATGTGAAGCTTGA+TGG | - | chr8.1:31079442-31079461 | MS.gene012053:CDS | 45.0% | |
GGTTCCTGGAATGGGAATAA+GGG | - | chr8.1:31079336-31079355 | MS.gene012053:CDS | 45.0% | |
GTTCCTGGAATGGGAATAAG+GGG | - | chr8.1:31079337-31079356 | MS.gene012053:CDS | 45.0% | |
TGGTTCCTGGAATGGGAATA+AGG | - | chr8.1:31079335-31079354 | MS.gene012053:CDS | 45.0% | |
! | GAAAGGTGTGACGAAAGAAG+AGG | - | chr8.1:31079573-31079592 | MS.gene012053:CDS | 45.0% |
! | GGGGTGGTGATAGTGAAAAA+GGG | - | chr8.1:31079389-31079408 | MS.gene012053:CDS | 45.0% |
! | GGGTGGTGATAGTGAAAAAG+GGG | - | chr8.1:31079390-31079409 | MS.gene012053:CDS | 45.0% |
! | GGTGGTGATAGTGAAAAAGG+GGG | - | chr8.1:31079391-31079410 | MS.gene012053:CDS | 45.0% |
! | GGTTGGTGCAAAAGCTTCTA+TGG | - | chr8.1:31079624-31079643 | MS.gene012053:CDS | 45.0% |
! | TGATAGTGAAAAAGGGGGTG+AGG | - | chr8.1:31079396-31079415 | MS.gene012053:CDS | 45.0% |
! | TTTGGGGTTGAAGGAAGCTA+AGG | - | chr8.1:31079519-31079538 | MS.gene012053:CDS | 45.0% |
!! | GATGTTGATGGTTCCTGGAA+TGG | - | chr8.1:31079327-31079346 | MS.gene012053:CDS | 45.0% |
!! | TCGCCTACGCTTTTGAAGAA+AGG | - | chr8.1:31079556-31079575 | MS.gene012053:CDS | 45.0% |
GGGTGAGGTGAAGAAAGTTG+AGG | - | chr8.1:31079411-31079430 | MS.gene012053:CDS | 50.0% | |
! | GGGGGTGGTGATAGTGAAAA+AGG | - | chr8.1:31079388-31079407 | MS.gene012053:CDS | 50.0% |
AGGTGTAGGTGGAGGGAAAG+GGG | - | chr8.1:31079369-31079388 | MS.gene012053:CDS | 55.0% | |
GAGGTGTAGGTGGAGGGAAA+GGG | - | chr8.1:31079368-31079387 | MS.gene012053:CDS | 55.0% | |
GGAATAAGGGGAATGCCGAG+AGG | - | chr8.1:31079349-31079368 | MS.gene012053:CDS | 55.0% | |
GTGACGAAAGAAGAGGCCGA+GGG | - | chr8.1:31079580-31079599 | MS.gene012053:CDS | 55.0% | |
TGACGAAAGAAGAGGCCGAG+GGG | - | chr8.1:31079581-31079600 | MS.gene012053:CDS | 55.0% | |
TGTGACGAAAGAAGAGGCCG+AGG | - | chr8.1:31079579-31079598 | MS.gene012053:CDS | 55.0% | |
TTCCCTCCACCTACACCTCT+CGG | + | chr8.1:31079367-31079386 | None:intergenic | 55.0% | |
! | AGAGGTGTAGGTGGAGGGAA+AGG | - | chr8.1:31079367-31079386 | MS.gene012053:CDS | 55.0% |
GGTGTAGGTGGAGGGAAAGG+GGG | - | chr8.1:31079370-31079389 | MS.gene012053:CDS | 60.0% | |
! | AGGGGAATGCCGAGAGGTGT+AGG | - | chr8.1:31079355-31079374 | MS.gene012053:CDS | 60.0% |
! | ATGCCGAGAGGTGTAGGTGG+AGG | - | chr8.1:31079361-31079380 | MS.gene012053:CDS | 60.0% |
! | GGAATGCCGAGAGGTGTAGG+TGG | - | chr8.1:31079358-31079377 | MS.gene012053:CDS | 60.0% |
! | TGCCGAGAGGTGTAGGTGGA+GGG | - | chr8.1:31079362-31079381 | MS.gene012053:CDS | 60.0% |
GTAGGTGGAGGGAAAGGGGG+TGG | - | chr8.1:31079373-31079392 | MS.gene012053:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 31079271 | 31079651 | 31079271 | ID=MS.gene012053 |
chr8.1 | mRNA | 31079271 | 31079651 | 31079271 | ID=MS.gene012053.t1;Parent=MS.gene012053 |
chr8.1 | exon | 31079271 | 31079651 | 31079271 | ID=MS.gene012053.t1.exon1;Parent=MS.gene012053.t1 |
chr8.1 | CDS | 31079271 | 31079651 | 31079271 | ID=cds.MS.gene012053.t1;Parent=MS.gene012053.t1 |
Gene Sequence |
Protein sequence |