Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012085.t1 | XP_003629355.1 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012085.t1 | Q9FN50 | 37.3 | 244 | 139 | 6 | 44 | 281 | 22 | 257 | 1.8e-31 | 137.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012085.t1 | G7LD00 | 97.9 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 9.0e-146 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012085 | MS.gene038794 | PPI |
| MS.gene012085 | MS.gene033008 | PPI |
| MS.gene012085 | MS.gene68971 | PPI |
| MS.gene012085 | MS.gene044507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012085.t1 | MTR_8g076220 | 97.872 | 282 | 6 | 0 | 1 | 282 | 1 | 282 | 0.0 | 558 |
| MS.gene012085.t1 | MTR_4g112540 | 39.196 | 199 | 117 | 3 | 85 | 281 | 54 | 250 | 1.16e-44 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012085.t1 | AT3G51140 | 62.846 | 253 | 87 | 4 | 30 | 281 | 31 | 277 | 2.47e-111 | 323 |
| MS.gene012085.t1 | AT3G51140 | 59.606 | 203 | 77 | 3 | 30 | 231 | 31 | 229 | 4.19e-81 | 244 |
| MS.gene012085.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 1.60e-44 | 152 |
| MS.gene012085.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 1.60e-44 | 152 |
Find 64 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAACAATGATTGTATC+TGG | 0.187129 | 8.4:+29345403 | None:intergenic |
| AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8.4:+29347493 | MS.gene012085:CDS |
| CAAGGCAACGAGGAGGTAAT+TGG | 0.237294 | 8.4:-29345453 | None:intergenic |
| GCCTTGAATCACGCCGTGTT+CGG | 0.251804 | 8.4:+29345470 | MS.gene012085:CDS |
| GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8.4:-29348151 | None:intergenic |
| GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8.4:+29347494 | MS.gene012085:CDS |
| CTTATTCCAAGTCGTTTATA+CGG | 0.293016 | 8.4:-29347100 | None:intergenic |
| GGATCGCTCACATTAATTCT+TGG | 0.335746 | 8.4:-29347079 | None:intergenic |
| CCTTGAATCACGCCGTGTTC+GGG | 0.341263 | 8.4:+29345471 | MS.gene012085:CDS |
| CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8.4:+29347417 | MS.gene012085:CDS |
| GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8.4:-29347165 | None:intergenic |
| AAGGCAACGAGGAGGTAATT+GGG | 0.388453 | 8.4:-29345452 | None:intergenic |
| GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8.4:+29348108 | MS.gene012085:CDS |
| CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8.4:+29347297 | MS.gene012085:CDS |
| CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8.4:-29347306 | None:intergenic |
| GATCGCTCACATTAATTCTT+GGG | 0.413368 | 8.4:-29347078 | None:intergenic |
| CCCGAACACGGCGTGATTCA+AGG | 0.430871 | 8.4:-29345471 | None:intergenic |
| CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8.4:+29348159 | MS.gene012085:CDS |
| CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8.4:-29348227 | None:intergenic |
| TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8.4:+29348141 | MS.gene012085:CDS |
| AGTGCTATGGGTGCTTCATT+TGG | 0.458480 | 8.4:+29345719 | MS.gene012085:CDS |
| TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8.4:-29348146 | None:intergenic |
| TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8.4:-29347305 | None:intergenic |
| CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8.4:-29347416 | None:intergenic |
| CATCGACCTATCTTATATGA+AGG | 0.484004 | 8.4:+29348221 | MS.gene012085:CDS |
| AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8.4:-29347412 | None:intergenic |
| TCAATTGGTCAGAAGTGCTA+TGG | 0.489625 | 8.4:+29345706 | MS.gene012085:CDS |
| TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8.4:+29347163 | MS.gene012085:CDS |
| TGATAGACGACAAGTTCAAT+TGG | 0.501549 | 8.4:+29345691 | MS.gene012085:CDS |
| GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8.4:-29348145 | None:intergenic |
| TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8.4:+29347473 | MS.gene012085:CDS |
| ATATAACAATGATTGTATCT+GGG | 0.516139 | 8.4:+29345404 | None:intergenic |
| TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8.4:-29347343 | None:intergenic |
| TAGGCATACCTTTCCACACT+GGG | 0.543225 | 8.4:-29345541 | None:intergenic |
| GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8.4:-29347427 | None:intergenic |
| GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8.4:+29347403 | MS.gene012085:CDS |
| TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8.4:+29348150 | MS.gene012085:CDS |
| GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8.4:-29348166 | None:intergenic |
| AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8.4:-29345451 | None:intergenic |
| CAATTGGTCAGAAGTGCTAT+GGG | 0.571474 | 8.4:+29345707 | MS.gene012085:CDS |
| CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8.4:+29347461 | MS.gene012085:CDS |
| AGCGATCCGTATAAACGACT+TGG | 0.578474 | 8.4:+29347094 | MS.gene012085:CDS |
| TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8.4:+29347404 | MS.gene012085:CDS |
| CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8.4:+29348142 | MS.gene012085:CDS |
| AAGTGTAGATTCAATTGAGT+CGG | 0.595129 | 8.4:+29347195 | MS.gene012085:CDS |
| CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8.4:-29348142 | None:intergenic |
| TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8.4:+29348149 | MS.gene012085:CDS |
| AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8.4:+29347137 | MS.gene012085:CDS |
| CAGCGTTTCCCAGTGTGGAA+AGG | 0.603927 | 8.4:+29345533 | MS.gene012085:CDS |
| CGATTCGTTCAGGCTGTCAG+AGG | 0.606356 | 8.4:+29347307 | MS.gene012085:CDS |
| TAAACGACTTGGAATAAGCA+AGG | 0.615337 | 8.4:+29347105 | MS.gene012085:CDS |
| AATTACTGACACCATCAAGA+AGG | 0.623704 | 8.4:-29348119 | None:intergenic |
| GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8.4:+29347399 | MS.gene012085:CDS |
| TTAGGCATACCTTTCCACAC+TGG | 0.639996 | 8.4:-29345542 | None:intergenic |
| TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8.4:+29347164 | MS.gene012085:CDS |
| AAGGACAGCGTTTCCCAGTG+TGG | 0.653221 | 8.4:+29345528 | MS.gene012085:CDS |
| TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8.4:-29347401 | None:intergenic |
| GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8.4:+29345743 | MS.gene012085:CDS |
| TGGCTGGTAAATGTATACAA+AGG | 0.664469 | 8.4:+29345509 | MS.gene012085:CDS |
| AAAATGACATGACCCGAACA+CGG | 0.665683 | 8.4:-29345483 | None:intergenic |
| ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8.4:+29345412 | MS.gene012085:CDS |
| GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8.4:-29345450 | None:intergenic |
| CGGCGTGATTCAAGGCAACG+AGG | 0.712176 | 8.4:-29345463 | None:intergenic |
| CGTGATTCAAGGCAACGAGG+AGG | 0.718984 | 8.4:-29345460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCATGATACATAAAA+TGG | + | chr8.4:29345797-29345816 | MS.gene012085:intron | 15.0% |
| !! | TAAAAAAAATCCAAAACAAA+CGG | + | chr8.4:29347951-29347970 | MS.gene012085:intron | 15.0% |
| !!! | AAAAAAAATAGATTTTGAGT+TGG | + | chr8.4:29347654-29347673 | MS.gene012085:intron | 15.0% |
| !!! | AGTTTTTATAATGAATATAG+TGG | - | chr8.4:29347350-29347369 | None:intergenic | 15.0% |
| !!! | GATAACATATGTTTTATTAT+GGG | + | chr8.4:29348195-29348214 | MS.gene012085:CDS | 15.0% |
| !!! | GTTTAGAAAAAAATAGATTT+TGG | + | chr8.4:29347795-29347814 | MS.gene012085:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAACATA+AGG | - | chr8.4:29347792-29347811 | None:intergenic | 15.0% |
| !!! | TGATAACATATGTTTTATTA+TGG | + | chr8.4:29348194-29348213 | MS.gene012085:CDS | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+GGG | + | chr8.4:29347952-29347971 | MS.gene012085:intron | 20.0% |
| !! | ATTCATTATAAAAACTTCAC+TGG | + | chr8.4:29347354-29347373 | MS.gene012085:CDS | 20.0% |
| !! | GTAAATCTATTGATATGAAA+AGG | - | chr8.4:29346315-29346334 | None:intergenic | 20.0% |
| !! | TATGAATAACTATCAAGAAA+GGG | - | chr8.4:29346727-29346746 | None:intergenic | 20.0% |
| !! | TCAAAAAGTAATGATTCATT+AGG | - | chr8.4:29345563-29345582 | None:intergenic | 20.0% |
| !! | TGACATCAACAAAAAAATTA+GGG | + | chr8.4:29347270-29347289 | MS.gene012085:CDS | 20.0% |
| !! | TTATGAATAACTATCAAGAA+AGG | - | chr8.4:29346728-29346747 | None:intergenic | 20.0% |
| !! | TTCATATCAATAGATTTACT+GGG | + | chr8.4:29346316-29346335 | MS.gene012085:intron | 20.0% |
| !! | TTGACATCAACAAAAAAATT+AGG | + | chr8.4:29347269-29347288 | MS.gene012085:CDS | 20.0% |
| !! | TTTCATATCAATAGATTTAC+TGG | + | chr8.4:29346315-29346334 | MS.gene012085:intron | 20.0% |
| !!! | ATTATTGTAGAAGAAAGTAT+AGG | + | chr8.4:29346077-29346096 | MS.gene012085:intron | 20.0% |
| !!! | CTTATTGTTGGTTTTATATA+AGG | - | chr8.4:29347005-29347024 | None:intergenic | 20.0% |
| !!! | TTTATAATGAATATAGTGGA+TGG | - | chr8.4:29347346-29347365 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATGTCAATTTTT+GGG | - | chr8.4:29347264-29347283 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGATGTCAATTTT+TGG | - | chr8.4:29347265-29347284 | None:intergenic | 20.0% |
| ! | AAATGATTCTGTGATCATTA+TGG | + | chr8.4:29345897-29345916 | MS.gene012085:intron | 25.0% |
| ! | AAGGTGATTCAAATATCATA+CGG | - | chr8.4:29346986-29347005 | None:intergenic | 25.0% |
| ! | ATGAATAACTATCAAGAAAG+GGG | - | chr8.4:29346726-29346745 | None:intergenic | 25.0% |
| ! | ATTCAAATATCATACGGATA+AGG | - | chr8.4:29346980-29346999 | None:intergenic | 25.0% |
| ! | GTTAAGCTATAACTTATTGT+TGG | - | chr8.4:29347017-29347036 | None:intergenic | 25.0% |
| ! | TAAAATGGATCTAGTAAAAC+TGG | + | chr8.4:29345812-29345831 | MS.gene012085:intron | 25.0% |
| ! | TAAAATGTTCACATATGACA+TGG | - | chr8.4:29346831-29346850 | None:intergenic | 25.0% |
| ! | TACAAAACATCAATCAAACA+AGG | - | chr8.4:29346245-29346264 | None:intergenic | 25.0% |
| ! | TTAAAAGAACAAAAGCAGAA+AGG | - | chr8.4:29346354-29346373 | None:intergenic | 25.0% |
| !! | AAATTAGGAATCAGTTTTCT+TGG | + | chr8.4:29346108-29346127 | MS.gene012085:intron | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | chr8.4:29347828-29347847 | MS.gene012085:intron | 25.0% |
| !!! | ATATCATTTTGATGCCTTTA+TGG | + | chr8.4:29348008-29348027 | MS.gene012085:intron | 25.0% |
| !!! | CATTTTGATAGCATAACTTA+GGG | + | chr8.4:29347613-29347632 | MS.gene012085:intron | 25.0% |
| !!! | GAATCATTACTTTTTGAACT+TGG | + | chr8.4:29345566-29345585 | MS.gene012085:intron | 25.0% |
| !!! | GTATGTTTTCTGAAACAATA+CGG | + | chr8.4:29345850-29345869 | MS.gene012085:intron | 25.0% |
| !!! | TAGATTACATTTTTTTCCTG+TGG | + | chr8.4:29345943-29345962 | MS.gene012085:intron | 25.0% |
| !!! | TATGTTTTCTGAAACAATAC+GGG | + | chr8.4:29345851-29345870 | MS.gene012085:intron | 25.0% |
| !!! | TCATTTTGATAGCATAACTT+AGG | + | chr8.4:29347612-29347631 | MS.gene012085:intron | 25.0% |
| AAGTGTAGATTCAATTGAGT+CGG | + | chr8.4:29347195-29347214 | MS.gene012085:CDS | 30.0% | |
| AATGTCATACAATGAGAACA+AGG | - | chr8.4:29347979-29347998 | None:intergenic | 30.0% | |
| AGAGAGATTCTGATATGATA+AGG | - | chr8.4:29346694-29346713 | None:intergenic | 30.0% | |
| ATGTCATACAATGAGAACAA+GGG | - | chr8.4:29347978-29347997 | None:intergenic | 30.0% | |
| CAACGTATTTCGTATATGAT+CGG | + | chr8.4:29347461-29347480 | MS.gene012085:CDS | 30.0% | |
| CAGTTAAACAACTGCTTTAT+GGG | + | chr8.4:29346507-29346526 | MS.gene012085:intron | 30.0% | |
| CATGTGAAAACTTAACAAGA+GGG | - | chr8.4:29346663-29346682 | None:intergenic | 30.0% | |
| CTTATTCCAAGTCGTTTATA+CGG | - | chr8.4:29347103-29347122 | None:intergenic | 30.0% | |
| GTAGTTAGTTAGTTAGGATT+TGG | + | chr8.4:29346130-29346149 | MS.gene012085:intron | 30.0% | |
| TAATCTAGGAGATGAAAAAC+TGG | - | chr8.4:29345666-29345685 | None:intergenic | 30.0% | |
| TATCAATAGATTTACTGGGA+CGG | + | chr8.4:29346320-29346339 | MS.gene012085:intron | 30.0% | |
| TCAGTTAAACAACTGCTTTA+TGG | + | chr8.4:29346506-29346525 | MS.gene012085:intron | 30.0% | |
| TCATGTGAAAACTTAACAAG+AGG | - | chr8.4:29346664-29346683 | None:intergenic | 30.0% | |
| TGAACTTGGAACTTTATGTA+AGG | + | chr8.4:29345580-29345599 | MS.gene012085:intron | 30.0% | |
| TGAATAACTATCAAGAAAGG+GGG | - | chr8.4:29346725-29346744 | None:intergenic | 30.0% | |
| TTCTTCGTCTTCATAATTGT+TGG | + | chr8.4:29345999-29346018 | MS.gene012085:intron | 30.0% | |
| ! | ACAATTTTCAACTAAACCAG+AGG | - | chr8.4:29346885-29346904 | None:intergenic | 30.0% |
| ! | AGAAGAAAGTATAGGAGTAT+GGG | + | chr8.4:29346085-29346104 | MS.gene012085:intron | 30.0% |
| ! | AGTTTCTTTTTCTTGACATG+TGG | + | chr8.4:29346464-29346483 | MS.gene012085:intron | 30.0% |
| ! | CAATTTTCAACTAAACCAGA+GGG | - | chr8.4:29346884-29346903 | None:intergenic | 30.0% |
| ! | GTTTCTTTTTCTTGACATGT+GGG | + | chr8.4:29346465-29346484 | MS.gene012085:intron | 30.0% |
| ! | TAGAAGAAAGTATAGGAGTA+TGG | + | chr8.4:29346084-29346103 | MS.gene012085:intron | 30.0% |
| ! | TTCTTGGTAGTTAGTTAGTT+AGG | + | chr8.4:29346124-29346143 | MS.gene012085:intron | 30.0% |
| ! | TTTCTTTTTCTTGACATGTG+GGG | + | chr8.4:29346466-29346485 | MS.gene012085:intron | 30.0% |
| !! | AAATGAAAAGTGCTCAACAA+TGG | - | chr8.4:29347598-29347617 | None:intergenic | 30.0% |
| !! | AAGGTTCATGTTTTGTTGAA+TGG | + | chr8.4:29345599-29345618 | MS.gene012085:intron | 30.0% |
| !! | CGTCTATCACATTTTAATCT+AGG | - | chr8.4:29345680-29345699 | None:intergenic | 30.0% |
| !! | GGGAAAATTGTTTTTCAGTT+TGG | + | chr8.4:29346438-29346457 | MS.gene012085:intron | 30.0% |
| !!! | GTGGTTGGTTTTTTTGTTTT+AGG | + | chr8.4:29346156-29346175 | MS.gene012085:intron | 30.0% |
| AAAAGATACTCTCTTCACAC+TGG | - | chr8.4:29346291-29346310 | None:intergenic | 35.0% | |
| AAGAAGAAATTCAAGCAGCT+AGG | + | chr8.4:29347137-29347156 | MS.gene012085:CDS | 35.0% | |
| AATAACTATCAAGAAAGGGG+GGG | - | chr8.4:29346723-29346742 | None:intergenic | 35.0% | |
| AATTACTGACACCATCAAGA+AGG | - | chr8.4:29348122-29348141 | None:intergenic | 35.0% | |
| AGCTGAGAGAAAAACCATAA+AGG | - | chr8.4:29348025-29348044 | None:intergenic | 35.0% | |
| AGGATAAGAGCTTTGCTTTA+TGG | + | chr8.4:29347493-29347512 | MS.gene012085:CDS | 35.0% | |
| ATGTGAAAACTTAACACGAG+AGG | - | chr8.4:29346605-29346624 | None:intergenic | 35.0% | |
| ATTGTTAGTGCAATACAGAG+AGG | - | chr8.4:29346940-29346959 | None:intergenic | 35.0% | |
| CTGAGAAGCTGAACTAAAAT+AGG | + | chr8.4:29346025-29346044 | MS.gene012085:intron | 35.0% | |
| CTGTGATCATTATGGATGTT+TGG | + | chr8.4:29345905-29345924 | MS.gene012085:intron | 35.0% | |
| CTGTGCACAATAAGGATTAA+AGG | - | chr8.4:29346197-29346216 | None:intergenic | 35.0% | |
| CTTTAATCCTTATTGTGCAC+AGG | + | chr8.4:29346195-29346214 | MS.gene012085:intron | 35.0% | |
| GAATAACTATCAAGAAAGGG+GGG | - | chr8.4:29346724-29346743 | None:intergenic | 35.0% | |
| GATATGTCAAATGATTCTGC+TGG | + | chr8.4:29345743-29345762 | MS.gene012085:CDS | 35.0% | |
| GATCGCTCACATTAATTCTT+GGG | - | chr8.4:29347081-29347100 | None:intergenic | 35.0% | |
| GCTTATTTATATCCGTGCTT+TGG | + | chr8.4:29348056-29348075 | MS.gene012085:intron | 35.0% | |
| GGATAAGAGCTTTGCTTTAT+GGG | + | chr8.4:29347494-29347513 | MS.gene012085:CDS | 35.0% | |
| GTGTTTACTTGCATGTCTTA+GGG | + | chr8.4:29346910-29346929 | MS.gene012085:intron | 35.0% | |
| TCCTGATTCAGAAATATGCA+GGG | + | chr8.4:29347164-29347183 | MS.gene012085:CDS | 35.0% | |
| TGATAGACGACAAGTTCAAT+TGG | + | chr8.4:29345691-29345710 | MS.gene012085:CDS | 35.0% | |
| TGGCTGGTAAATGTATACAA+AGG | + | chr8.4:29345509-29345528 | MS.gene012085:CDS | 35.0% | |
| TGTGAAAACTTAACACGAGA+GGG | - | chr8.4:29346604-29346623 | None:intergenic | 35.0% | |
| TGTGTTTACTTGCATGTCTT+AGG | + | chr8.4:29346909-29346928 | MS.gene012085:intron | 35.0% | |
| TGTTTACTTGCATGTCTTAG+GGG | + | chr8.4:29346911-29346930 | MS.gene012085:intron | 35.0% | |
| TTCCTGATTCAGAAATATGC+AGG | + | chr8.4:29347163-29347182 | MS.gene012085:CDS | 35.0% | |
| TTCTGTAAATTGACAGGGTA+AGG | - | chr8.4:29345643-29345662 | None:intergenic | 35.0% | |
| ! | ATTTATCTTTTCGTGGCTGT+TGG | + | chr8.4:29348093-29348112 | MS.gene012085:CDS | 35.0% |
| ! | GTATAGGAGTATGGGAAATT+AGG | + | chr8.4:29346093-29346112 | MS.gene012085:intron | 35.0% |
| ! | GTTAGTTAGGATTTGGTTAG+TGG | + | chr8.4:29346137-29346156 | MS.gene012085:intron | 35.0% |
| ! | TAAACGACTTGGAATAAGCA+AGG | + | chr8.4:29347105-29347124 | MS.gene012085:CDS | 35.0% |
| ! | TCACTGGCATTTTTGTTACT+TGG | + | chr8.4:29347370-29347389 | MS.gene012085:CDS | 35.0% |
| ! | TTTATCTTTTCGTGGCTGTT+GGG | + | chr8.4:29348094-29348113 | MS.gene012085:CDS | 35.0% |
| !! | AACTGGTTCTGTAAATTGAC+AGG | - | chr8.4:29345649-29345668 | None:intergenic | 35.0% |
| !! | ACTGGTTCTGTAAATTGACA+GGG | - | chr8.4:29345648-29345667 | None:intergenic | 35.0% |
| !! | TTGGAGCATTTATCTTTTCG+TGG | + | chr8.4:29348086-29348105 | MS.gene012085:CDS | 35.0% |
| !!! | CTATTTTAGTTCAGCTTCTC+AGG | - | chr8.4:29346027-29346046 | None:intergenic | 35.0% |
| AAAATGACATGACCCGAACA+CGG | - | chr8.4:29345486-29345505 | None:intergenic | 40.0% | |
| AACAGCTGCATTTGTAGCAA+AGG | - | chr8.4:29347056-29347075 | None:intergenic | 40.0% | |
| AAGAAGGGAAACAGTCATTG+TGG | - | chr8.4:29346562-29346581 | None:intergenic | 40.0% | |
| CAAACCAGAAGGAGTTCAAA+GGG | + | chr8.4:29346418-29346437 | MS.gene012085:intron | 40.0% | |
| CCTCCCATTCCTATAATCAA+GGG | + | chr8.4:29348142-29348161 | MS.gene012085:CDS | 40.0% | |
| GACTTGTAATGCATCTCTTG+GGG | - | chr8.4:29346382-29346401 | None:intergenic | 40.0% | |
| GATATTGCAACCTGAAGTGT+TGG | - | chr8.4:29347430-29347449 | None:intergenic | 40.0% | |
| GGACTTGTAATGCATCTCTT+GGG | - | chr8.4:29346383-29346402 | None:intergenic | 40.0% | |
| GGATCGCTCACATTAATTCT+TGG | - | chr8.4:29347082-29347101 | None:intergenic | 40.0% | |
| GGTCCCTTGATTATAGGAAT+GGG | - | chr8.4:29348148-29348167 | None:intergenic | 40.0% | |
| GTCTAGCAGACAATATCATC+AGG | - | chr8.4:29347576-29347595 | None:intergenic | 40.0% | |
| TAGACTTCCTGTGCACAATA+AGG | - | chr8.4:29346205-29346224 | None:intergenic | 40.0% | |
| TCCTATAATCAAGGGACCAA+GGG | + | chr8.4:29348150-29348169 | MS.gene012085:CDS | 40.0% | |
| TCCTCCCATTCCTATAATCA+AGG | + | chr8.4:29348141-29348160 | MS.gene012085:CDS | 40.0% | |
| TGGTCCCTTGATTATAGGAA+TGG | - | chr8.4:29348149-29348168 | None:intergenic | 40.0% | |
| TTCAACTAAACCAGAGGGTT+GGG | - | chr8.4:29346879-29346898 | None:intergenic | 40.0% | |
| TTCCTATAATCAAGGGACCA+AGG | + | chr8.4:29348149-29348168 | MS.gene012085:CDS | 40.0% | |
| TTTCAACTAAACCAGAGGGT+TGG | - | chr8.4:29346880-29346899 | None:intergenic | 40.0% | |
| ! | ATGATTGTATCTGGGTTGAG+TGG | + | chr8.4:29345412-29345431 | MS.gene012085:CDS | 40.0% |
| ! | GGTTTTTCTCTCAGCTTCTT+AGG | + | chr8.4:29348029-29348048 | MS.gene012085:intron | 40.0% |
| ! | GTTAGGATTTGGTTAGTGGT+TGG | + | chr8.4:29346141-29346160 | MS.gene012085:intron | 40.0% |
| ! | TTTTCCCTTTGAACTCCTTC+TGG | - | chr8.4:29346425-29346444 | None:intergenic | 40.0% |
| ! | TTTTTCTTGACATGTGGGGT+GGG | + | chr8.4:29346470-29346489 | MS.gene012085:intron | 40.0% |
| !! | ATGGATGTTTGGTTCTCTTG+TGG | + | chr8.4:29345916-29345935 | MS.gene012085:intron | 40.0% |
| !! | CAATTGGTCAGAAGTGCTAT+GGG | + | chr8.4:29345707-29345726 | MS.gene012085:CDS | 40.0% |
| !! | TCAATTGGTCAGAAGTGCTA+TGG | + | chr8.4:29345706-29345725 | MS.gene012085:CDS | 40.0% |
| !! | TCTTGCTCATTTGGTTTGCT+AGG | + | chr8.4:29345966-29345985 | MS.gene012085:intron | 40.0% |
| AACCAAATGAGCAAGACCAC+AGG | - | chr8.4:29345962-29345981 | None:intergenic | 45.0% | |
| AAGGCAACGAGGAGGTAATT+GGG | - | chr8.4:29345455-29345474 | None:intergenic | 45.0% | |
| AGATGCATTACAAGTCCGAG+AGG | + | chr8.4:29346386-29346405 | MS.gene012085:intron | 45.0% | |
| AGCGATCCGTATAAACGACT+TGG | + | chr8.4:29347094-29347113 | MS.gene012085:CDS | 45.0% | |
| AGTGCTATGGGTGCTTCATT+TGG | + | chr8.4:29345719-29345738 | MS.gene012085:CDS | 45.0% | |
| CCAAACCAGAAGGAGTTCAA+AGG | + | chr8.4:29346417-29346436 | MS.gene012085:intron | 45.0% | |
| CCCTTGATTATAGGAATGGG+AGG | - | chr8.4:29348145-29348164 | None:intergenic | 45.0% | |
| CGGACTTGTAATGCATCTCT+TGG | - | chr8.4:29346384-29346403 | None:intergenic | 45.0% | |
| GATGCATTACAAGTCCGAGA+GGG | + | chr8.4:29346387-29346406 | MS.gene012085:intron | 45.0% | |
| TAGGCATACCTTTCCACACT+GGG | - | chr8.4:29345544-29345563 | None:intergenic | 45.0% | |
| TATATGATCGGCTGAAGAGC+AGG | + | chr8.4:29347473-29347492 | MS.gene012085:CDS | 45.0% | |
| TATGGGTGACAGACAGATGT+TGG | + | chr8.4:29346524-29346543 | MS.gene012085:intron | 45.0% | |
| TTAGGCATACCTTTCCACAC+TGG | - | chr8.4:29345545-29345564 | None:intergenic | 45.0% | |
| TTCCTCGGTTGGAAAGAGAA+CGG | - | chr8.4:29347404-29347423 | None:intergenic | 45.0% | |
| TTCTCTTTCCAACCGAGGAA+GGG | + | chr8.4:29347404-29347423 | MS.gene012085:CDS | 45.0% | |
| TTTCCAAGGGTAGGGAAGAA+GGG | - | chr8.4:29346577-29346596 | None:intergenic | 45.0% | |
| ! | CAATCAATCCCGATTCGTTC+AGG | + | chr8.4:29347297-29347316 | MS.gene012085:CDS | 45.0% |
| ! | CCTTTGAACTCCTTCTGGTT+TGG | - | chr8.4:29346420-29346439 | None:intergenic | 45.0% |
| ! | CTTTTTCTTGACATGTGGGG+TGG | + | chr8.4:29346469-29346488 | MS.gene012085:intron | 45.0% |
| ! | GCCCTGCATATTTCTGAATC+AGG | - | chr8.4:29347168-29347187 | None:intergenic | 45.0% |
| ! | TATATCCGTGCTTTGGTGCA+GGG | + | chr8.4:29348063-29348082 | MS.gene012085:intron | 45.0% |
| ! | TTATATCCGTGCTTTGGTGC+AGG | + | chr8.4:29348062-29348081 | MS.gene012085:intron | 45.0% |
| ! | TTCCTGTGGTCTTGCTCATT+TGG | + | chr8.4:29345957-29345976 | MS.gene012085:intron | 45.0% |
| ! | TTTTCTTGACATGTGGGGTG+GGG | + | chr8.4:29346471-29346490 | MS.gene012085:intron | 45.0% |
| !!! | GTCATGTCATTTTCTGTGGC+TGG | + | chr8.4:29345493-29345512 | MS.gene012085:CDS | 45.0% |
| !!! | TCGGGTCATGTCATTTTCTG+TGG | + | chr8.4:29345489-29345508 | MS.gene012085:CDS | 45.0% |
| !!! | AATGATTTTTTTTTTTTTAA+TGG | + | chr8.4:29347856-29347875 | MS.gene012085:intron | 5.0% |
| AACAAGAGGGTCTCTGCCTA+AGG | - | chr8.4:29346650-29346669 | None:intergenic | 50.0% | |
| ACAAGAGGGTCTCTGCCTAA+GGG | - | chr8.4:29346649-29346668 | None:intergenic | 50.0% | |
| ACGAGAGGGTCTCTTTCCAA+GGG | - | chr8.4:29346590-29346609 | None:intergenic | 50.0% | |
| AGGCAACGAGGAGGTAATTG+GGG | - | chr8.4:29345454-29345473 | None:intergenic | 50.0% | |
| AGGGTCTCTTTCCAAGGGTA+GGG | - | chr8.4:29346585-29346604 | None:intergenic | 50.0% | |
| CAAGGCAACGAGGAGGTAAT+TGG | - | chr8.4:29345456-29345475 | None:intergenic | 50.0% | |
| CATTACAAGTCCGAGAGGGT+AGG | + | chr8.4:29346391-29346410 | MS.gene012085:intron | 50.0% | |
| CTCTGACAGCCTGAACGAAT+CGG | - | chr8.4:29347309-29347328 | None:intergenic | 50.0% | |
| CTTTCCAAGGGTAGGGAAGA+AGG | - | chr8.4:29346578-29346597 | None:intergenic | 50.0% | |
| GCCCTTGGTCCCTTGATTAT+AGG | - | chr8.4:29348154-29348173 | None:intergenic | 50.0% | |
| GCTGTTGGGAACCTTCTTGA+TGG | + | chr8.4:29348108-29348127 | MS.gene012085:CDS | 50.0% | |
| GTGATCACCTCAAATGCCCT+TGG | - | chr8.4:29348169-29348188 | None:intergenic | 50.0% | |
| GTTCTCTTTCCAACCGAGGA+AGG | + | chr8.4:29347403-29347422 | MS.gene012085:CDS | 50.0% | |
| TCTGACAGCCTGAACGAATC+GGG | - | chr8.4:29347308-29347327 | None:intergenic | 50.0% | |
| TGACTTTCTTCCCCACCCTT+AGG | + | chr8.4:29346631-29346650 | MS.gene012085:intron | 50.0% | |
| TTTCCCTTCTTCCCTACCCT+TGG | + | chr8.4:29346571-29346590 | MS.gene012085:intron | 50.0% | |
| TTTCTTGACATGTGGGGTGG+GGG | + | chr8.4:29346472-29346491 | MS.gene012085:intron | 50.0% | |
| ! | GAACAAGGGCCCGTTTGTTT+TGG | - | chr8.4:29347964-29347983 | None:intergenic | 50.0% |
| AAGGACAGCGTTTCCCAGTG+TGG | + | chr8.4:29345528-29345547 | MS.gene012085:CDS | 55.0% | |
| AGGGTTGGGAGTGGCACAAA+TGG | - | chr8.4:29346865-29346884 | None:intergenic | 55.0% | |
| CACGAGAGGGTCTCTTTCCA+AGG | - | chr8.4:29346591-29346610 | None:intergenic | 55.0% | |
| CAGCGTTTCCCAGTGTGGAA+AGG | + | chr8.4:29345533-29345552 | MS.gene012085:CDS | 55.0% | |
| CCTTGAATCACGCCGTGTTC+GGG | + | chr8.4:29345471-29345490 | MS.gene012085:CDS | 55.0% | |
| CGATTCGTTCAGGCTGTCAG+AGG | + | chr8.4:29347307-29347326 | MS.gene012085:CDS | 55.0% | |
| CGTGATTCAAGGCAACGAGG+AGG | - | chr8.4:29345463-29345482 | None:intergenic | 55.0% | |
| CTAAACCAGAGGGTTGGGAG+TGG | - | chr8.4:29346874-29346893 | None:intergenic | 55.0% | |
| GACCGTTCTCTTTCCAACCG+AGG | + | chr8.4:29347399-29347418 | MS.gene012085:CDS | 55.0% | |
| GAGGGTCTCTTTCCAAGGGT+AGG | - | chr8.4:29346586-29346605 | None:intergenic | 55.0% | |
| GCCTTGAATCACGCCGTGTT+CGG | + | chr8.4:29345470-29345489 | MS.gene012085:CDS | 55.0% | |
| GGCAACGAGGAGGTAATTGG+GGG | - | chr8.4:29345453-29345472 | None:intergenic | 55.0% | |
| TACAAGTCCGAGAGGGTAGG+TGG | + | chr8.4:29346394-29346413 | MS.gene012085:intron | 55.0% | |
| TCCAACCCTGCACCAAAGCA+CGG | - | chr8.4:29348071-29348090 | None:intergenic | 55.0% | |
| TTCTTGACATGTGGGGTGGG+GGG | + | chr8.4:29346473-29346492 | MS.gene012085:intron | 55.0% | |
| !! | CAAGGGACCAAGGGCATTTG+AGG | + | chr8.4:29348159-29348178 | MS.gene012085:CDS | 55.0% |
| !! | CTGAAGTGTTGGCCCTTCCT+CGG | - | chr8.4:29347419-29347438 | None:intergenic | 55.0% |
| AGAGGGTCTCTGCCTAAGGG+TGG | - | chr8.4:29346646-29346665 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCTAAGGGTG+GGG | - | chr8.4:29346644-29346663 | None:intergenic | 60.0% | |
| CCCGAACACGGCGTGATTCA+AGG | - | chr8.4:29345474-29345493 | None:intergenic | 60.0% | |
| CGAGGAAGGGCCAACACTTC+AGG | + | chr8.4:29347417-29347436 | MS.gene012085:CDS | 60.0% | |
| CGGCGTGATTCAAGGCAACG+AGG | - | chr8.4:29345466-29345485 | None:intergenic | 60.0% | |
| GAGGGTCTCTGCCTAAGGGT+GGG | - | chr8.4:29346645-29346664 | None:intergenic | 60.0% | |
| GGGTAGGTGGCCAAACCAGA+AGG | + | chr8.4:29346407-29346426 | MS.gene012085:intron | 60.0% | |
| GGTTTGGCCACCTACCCTCT+CGG | - | chr8.4:29346404-29346423 | None:intergenic | 60.0% | |
| ! | TCCGTGCTTTGGTGCAGGGT+TGG | + | chr8.4:29348067-29348086 | MS.gene012085:intron | 60.0% |
| ! | TTGTGCCACTCCCAACCCTC+TGG | + | chr8.4:29346866-29346885 | MS.gene012085:intron | 60.0% |
| !! | AGTGTTGGCCCTTCCTCGGT+TGG | - | chr8.4:29347415-29347434 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 29345412 | 29348240 | 29345412 | ID=MS.gene012085 |
| chr8.4 | mRNA | 29345412 | 29348240 | 29345412 | ID=MS.gene012085.t1;Parent=MS.gene012085 |
| chr8.4 | exon | 29345412 | 29345554 | 29345412 | ID=MS.gene012085.t1.exon1;Parent=MS.gene012085.t1 |
| chr8.4 | CDS | 29345412 | 29345554 | 29345412 | ID=cds.MS.gene012085.t1;Parent=MS.gene012085.t1 |
| chr8.4 | exon | 29345661 | 29345764 | 29345661 | ID=MS.gene012085.t1.exon2;Parent=MS.gene012085.t1 |
| chr8.4 | CDS | 29345661 | 29345764 | 29345661 | ID=cds.MS.gene012085.t1;Parent=MS.gene012085.t1 |
| chr8.4 | exon | 29347071 | 29347515 | 29347071 | ID=MS.gene012085.t1.exon3;Parent=MS.gene012085.t1 |
| chr8.4 | CDS | 29347071 | 29347515 | 29347071 | ID=cds.MS.gene012085.t1;Parent=MS.gene012085.t1 |
| chr8.4 | exon | 29348084 | 29348240 | 29348084 | ID=MS.gene012085.t1.exon4;Parent=MS.gene012085.t1 |
| chr8.4 | CDS | 29348084 | 29348240 | 29348084 | ID=cds.MS.gene012085.t1;Parent=MS.gene012085.t1 |
| Gene Sequence |
| Protein sequence |
