Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033008.t1 | XP_003609152.1 | 98 | 251 | 5 | 0 | 1 | 251 | 1 | 251 | 1.40E-132 | 482.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033008.t1 | Q9FN50 | 69.1 | 256 | 73 | 3 | 2 | 251 | 3 | 258 | 8.5e-94 | 344.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033008.t1 | G7JT27 | 98.0 | 251 | 5 | 0 | 1 | 251 | 1 | 251 | 1.0e-132 | 482.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene89638 | MS.gene033008 | PPI |
MS.gene017661 | MS.gene033008 | PPI |
MS.gene76469 | MS.gene033008 | PPI |
MS.gene012085 | MS.gene033008 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033008.t1 | MTR_4g112540 | 98.008 | 251 | 5 | 0 | 1 | 251 | 1 | 251 | 0.0 | 496 |
MS.gene033008.t1 | MTR_8g076220 | 38.393 | 224 | 129 | 5 | 33 | 250 | 61 | 281 | 4.92e-45 | 152 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033008.t1 | AT5G23040 | 76.233 | 223 | 50 | 2 | 32 | 251 | 36 | 258 | 6.62e-124 | 353 |
MS.gene033008.t1 | AT5G23040 | 76.233 | 223 | 50 | 2 | 32 | 251 | 36 | 258 | 6.62e-124 | 353 |
MS.gene033008.t1 | AT3G51140 | 33.473 | 239 | 145 | 4 | 17 | 251 | 50 | 278 | 5.17e-42 | 145 |
MS.gene033008.t1 | AT3G51140 | 40.523 | 153 | 81 | 3 | 54 | 202 | 83 | 229 | 2.98e-34 | 123 |
MS.gene033008.t1 | AT2G20920 | 27.500 | 200 | 123 | 5 | 38 | 216 | 52 | 250 | 2.45e-11 | 62.8 |
Find 67 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACTAACTCTGGGGAATTT+TGG | 0.086811 | 8.4:-17446510 | None:intergenic |
ATGCTTCTGAAGAAGAAATT+TGG | 0.165582 | 8.4:+17446568 | MS.gene033008:CDS |
CAGCAACATTGTTGGAATAT+TGG | 0.219376 | 8.4:-17447882 | None:intergenic |
GAGGAAAGCGGTGGCGAAAT+TGG | 0.249902 | 8.4:-17444817 | None:intergenic |
TTGGCTAGAGCGTTCGTTAT+TGG | 0.284075 | 8.4:+17447729 | MS.gene033008:CDS |
GCTACAGGTGGCAATCTCTT+TGG | 0.284234 | 8.4:+17447668 | MS.gene033008:intron |
ATTGTTTCTCTTTGCCTTCA+TGG | 0.298571 | 8.4:+17446815 | MS.gene033008:CDS |
GTTGCCACTTCACTTGAAAA+AGG | 0.300132 | 8.4:-17447972 | None:intergenic |
AGCAACATTGTTGGAATATT+GGG | 0.319394 | 8.4:-17447881 | None:intergenic |
TGGCTAGAGCGTTCGTTATT+GGG | 0.329181 | 8.4:+17447730 | MS.gene033008:CDS |
TGCTTCTGAAGAAGAAATTT+GGG | 0.335100 | 8.4:+17446569 | MS.gene033008:CDS |
TTGGATTCTGCAGGCCCCTC+CGG | 0.343652 | 8.4:+17444942 | MS.gene033008:intron |
ATGGGTCTCTGGTTCATTGC+TGG | 0.351564 | 8.4:+17447856 | MS.gene033008:CDS |
AATTCCCCAGAGTTAGTGTT+TGG | 0.356525 | 8.4:+17446514 | MS.gene033008:CDS |
CTTGTGGCTGGATGGGTCTC+TGG | 0.370387 | 8.4:+17447845 | MS.gene033008:CDS |
ATTATGAATTCTGCTGAAAC+TGG | 0.386488 | 8.4:+17446849 | MS.gene033008:CDS |
AAATGAAAAGACAAAGAGTT+TGG | 0.389051 | 8.4:+17447710 | MS.gene033008:CDS |
TCTTTGCCTTCATGGGTGGC+TGG | 0.389646 | 8.4:+17446823 | MS.gene033008:CDS |
AGGTTTGGAGCTCTTGTGGC+TGG | 0.394881 | 8.4:+17447833 | MS.gene033008:intron |
TTGTTTCTCTTTGCCTTCAT+GGG | 0.395534 | 8.4:+17446816 | MS.gene033008:CDS |
TTGGAGCTCTTGTGGCTGGA+TGG | 0.399967 | 8.4:+17447837 | MS.gene033008:CDS |
TGGAGCTCTTGTGGCTGGAT+GGG | 0.401053 | 8.4:+17447838 | MS.gene033008:CDS |
AGGAAAGCGGTGGCGAAATT+GGG | 0.406392 | 8.4:-17444816 | None:intergenic |
CCAACGATGTTAAGAGTTCA+AGG | 0.419073 | 8.4:-17447919 | None:intergenic |
CAATGTTGCTGCGCCCAACT+TGG | 0.429282 | 8.4:+17447894 | MS.gene033008:CDS |
TGGATTCTGCAGGCCCCTCC+GGG | 0.429772 | 8.4:+17444943 | MS.gene033008:intron |
ATTCCCCAGAGTTAGTGTTT+GGG | 0.449394 | 8.4:+17446515 | MS.gene033008:CDS |
GAAACTTGGCGAAACGTTGT+GGG | 0.450485 | 8.4:-17444980 | None:intergenic |
TGGGATCCTTACCGACGCCT+TGG | 0.464510 | 8.4:+17446534 | MS.gene033008:CDS |
AGGATCCCAAACACTAACTC+TGG | 0.471905 | 8.4:-17446520 | None:intergenic |
GTTGGGCGCAGCAACATTGT+TGG | 0.472629 | 8.4:-17447890 | None:intergenic |
CTGAGGATAATTTCAGTTGG+TGG | 0.473276 | 8.4:-17446789 | None:intergenic |
TTTCTGTTGCAACAGTATGC+TGG | 0.473842 | 8.4:+17446603 | MS.gene033008:CDS |
AGAGTTCAAGGCTCCAAGTT+GGG | 0.476403 | 8.4:-17447907 | None:intergenic |
ACTTAGTACGAAACGAAACT+TGG | 0.478032 | 8.4:-17444994 | None:intergenic |
CGAAACTTGGCGAAACGTTG+TGG | 0.490078 | 8.4:-17444981 | None:intergenic |
TCAAATCAAACCTGAAAAGC+AGG | 0.503028 | 8.4:-17446873 | None:intergenic |
TTATAGGTTTGGAGCTCTTG+TGG | 0.505560 | 8.4:+17447829 | MS.gene033008:intron |
TGCGCTGTAGACACACCATA+TGG | 0.511360 | 8.4:+17445016 | MS.gene033008:CDS |
TTTCTTCTTCAGAAGCATCA+TGG | 0.518629 | 8.4:-17446563 | None:intergenic |
ACATAGGTGATACCTCCATA+TGG | 0.527025 | 8.4:-17445031 | None:intergenic |
TTTCTCTTTGCCTTCATGGG+TGG | 0.529189 | 8.4:+17446819 | MS.gene033008:CDS |
GGATCCCAAACACTAACTCT+GGG | 0.535496 | 8.4:-17446519 | None:intergenic |
GGCCCCTCCGGGAAAATACA+AGG | 0.538659 | 8.4:+17444954 | MS.gene033008:intron |
AATGCTCCAGCCACCCATGA+AGG | 0.539964 | 8.4:-17446829 | None:intergenic |
CCTTGAACTCTTAACATCGT+TGG | 0.541069 | 8.4:+17447919 | MS.gene033008:CDS |
CTTCTGAGGATAATTTCAGT+TGG | 0.554844 | 8.4:-17446792 | None:intergenic |
AGCACATTCTTGACCCATGG+TGG | 0.555534 | 8.4:-17446750 | None:intergenic |
CACATTCTTGACCCATGGTG+GGG | 0.558838 | 8.4:-17446748 | None:intergenic |
AAGAGTTCAAGGCTCCAAGT+TGG | 0.565418 | 8.4:-17447908 | None:intergenic |
TTTAGCACATTCTTGACCCA+TGG | 0.565764 | 8.4:-17446753 | None:intergenic |
CTAACACCAAGGCGTCGGTA+AGG | 0.567021 | 8.4:-17446540 | None:intergenic |
GAGGAGCGTAGAATCAATAG+AGG | 0.575040 | 8.4:+17446632 | MS.gene033008:CDS |
GCACATTCTTGACCCATGGT+GGG | 0.578738 | 8.4:-17446749 | None:intergenic |
TGATGGCTAGTTTCGTACAA+AGG | 0.587486 | 8.4:+17446673 | MS.gene033008:CDS |
AGTTGAGGAGTCCCCACCAT+GGG | 0.606304 | 8.4:+17446737 | MS.gene033008:CDS |
CAAGTTGAAGAAGAAAGTTG+AGG | 0.611137 | 8.4:+17446722 | MS.gene033008:CDS |
CAAAGAGAAACAATCTTCTG+AGG | 0.616936 | 8.4:-17446806 | None:intergenic |
CATGGCTAACACCAAGGCGT+CGG | 0.618805 | 8.4:-17446545 | None:intergenic |
TGGCTAGTTTCGTACAAAGG+AGG | 0.635562 | 8.4:+17446676 | MS.gene033008:CDS |
AACAGTATGCTGGACATGAG+AGG | 0.646098 | 8.4:+17446613 | MS.gene033008:CDS |
GCTTCTGAAGAAGAAATTTG+GGG | 0.649344 | 8.4:+17446570 | MS.gene033008:CDS |
AAGCATCATGGCTAACACCA+AGG | 0.688521 | 8.4:-17446551 | None:intergenic |
AAGTTGAGGAGTCCCCACCA+TGG | 0.688946 | 8.4:+17446736 | MS.gene033008:CDS |
CTTCTGAAGAAGAAATTTGG+GGG | 0.702966 | 8.4:+17446571 | MS.gene033008:CDS |
GCTGTAGACACACCATATGG+AGG | 0.724697 | 8.4:+17445019 | MS.gene033008:CDS |
GATCCCAAACACTAACTCTG+GGG | 0.736381 | 8.4:-17446518 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATTTATTTATTCCATA+AGG | - | chr8.4:17446452-17446471 | None:intergenic | 10.0% |
!! | AAATGGTTAACAAAAATTAA+AGG | - | chr8.4:17447790-17447809 | None:intergenic | 15.0% |
!! | AATAAATGAATTAAGGATAT+AGG | - | chr8.4:17444869-17444888 | None:intergenic | 15.0% |
!! | GAAAACTAAATAATATAGAT+AGG | - | chr8.4:17445167-17445186 | None:intergenic | 15.0% |
!! | TAAAAATAACGATAAATTCT+AGG | - | chr8.4:17445795-17445814 | None:intergenic | 15.0% |
!! | AATTTATTTATTCCATAAGG+TGG | - | chr8.4:17446449-17446468 | None:intergenic | 20.0% |
!! | ACATTATGGAAAAGATAATT+TGG | + | chr8.4:17447585-17447604 | MS.gene033008:intron | 20.0% |
!! | ATATAGACTTGTATAAACAA+AGG | - | chr8.4:17447443-17447462 | None:intergenic | 20.0% |
!! | CATGTATTATGAAATGTTTA+GGG | - | chr8.4:17445835-17445854 | None:intergenic | 20.0% |
!! | GTTAGAACAATTTAATCTTA+AGG | + | chr8.4:17447533-17447552 | MS.gene033008:intron | 20.0% |
!! | TAAAATTCCACATATAAATG+CGG | - | chr8.4:17445539-17445558 | None:intergenic | 20.0% |
!! | TAAATTCGAAGATAAAACAT+AGG | - | chr8.4:17445050-17445069 | None:intergenic | 20.0% |
!! | TCCAAAATTGTAGAAAAAAA+TGG | + | chr8.4:17447028-17447047 | MS.gene033008:intron | 20.0% |
!!! | AAATTGCAATCCTAATTTTT+TGG | - | chr8.4:17446063-17446082 | None:intergenic | 20.0% |
!!! | ACCATTTTTTTCTACAATTT+TGG | - | chr8.4:17447032-17447051 | None:intergenic | 20.0% |
!!! | ATTTTTTTCTACAATTTTGG+AGG | - | chr8.4:17447029-17447048 | None:intergenic | 20.0% |
!!! | TCCAAAAGCATTAATTAATA+TGG | - | chr8.4:17444927-17444946 | None:intergenic | 20.0% |
!!! | TCCATATTAATTAATGCTTT+TGG | + | chr8.4:17444923-17444942 | MS.gene033008:intron | 20.0% |
!!! | TGCTTTTGAAAAAATATTGA+TGG | + | chr8.4:17446656-17446675 | MS.gene033008:CDS | 20.0% |
! | AAAACTTTATCCAAAAAGAC+TGG | - | chr8.4:17447407-17447426 | None:intergenic | 25.0% |
! | AAAATTCCACATATAAATGC+GGG | - | chr8.4:17445538-17445557 | None:intergenic | 25.0% |
! | AAATGAAAAGACAAAGAGTT+TGG | + | chr8.4:17447710-17447729 | MS.gene033008:CDS | 25.0% |
! | AAATGAATTAAGGATATAGG+AGG | - | chr8.4:17444866-17444885 | None:intergenic | 25.0% |
! | AACATCAATTATAAGGATAG+AGG | + | chr8.4:17445979-17445998 | MS.gene033008:intron | 25.0% |
! | AATATAGATAGGTGAATATG+TGG | - | chr8.4:17445156-17445175 | None:intergenic | 25.0% |
! | AATATTAATTTCTCAAACCG+TGG | + | chr8.4:17447071-17447090 | MS.gene033008:intron | 25.0% |
! | AATGTTAAGTCATCTACAAA+GGG | + | chr8.4:17447120-17447139 | MS.gene033008:intron | 25.0% |
! | ACATCAATTATAAGGATAGA+GGG | + | chr8.4:17445980-17445999 | MS.gene033008:intron | 25.0% |
! | AGGATATAATAGTGAATAGA+CGG | - | chr8.4:17447470-17447489 | None:intergenic | 25.0% |
! | ATATTAATTTCTCAAACCGT+GGG | + | chr8.4:17447072-17447091 | MS.gene033008:intron | 25.0% |
! | ATTCACTATTATATCCTTCA+AGG | + | chr8.4:17447473-17447492 | MS.gene033008:intron | 25.0% |
! | CAAAAATCATCTTAAAGCTA+AGG | - | chr8.4:17446337-17446356 | None:intergenic | 25.0% |
! | CTATCTTTGGTTATCAATAA+AGG | + | chr8.4:17447240-17447259 | MS.gene033008:intron | 25.0% |
! | GCATGTATTATGAAATGTTT+AGG | - | chr8.4:17445836-17445855 | None:intergenic | 25.0% |
! | TAATCTATATTATACGCCAA+AGG | - | chr8.4:17445717-17445736 | None:intergenic | 25.0% |
! | TAGAAGCAACATCAATTATA+AGG | + | chr8.4:17445972-17445991 | MS.gene033008:intron | 25.0% |
! | TATAAAAGTTCCATACAACA+GGG | + | chr8.4:17446020-17446039 | MS.gene033008:intron | 25.0% |
! | TGAAGCGAATAAATGAATTA+AGG | - | chr8.4:17444876-17444895 | None:intergenic | 25.0% |
! | TTGTTGTAAGCAAATAGTAA+GGG | + | chr8.4:17445299-17445318 | MS.gene033008:intron | 25.0% |
! | TTTATTTGACTATTGCTACT+TGG | + | chr8.4:17445066-17445085 | MS.gene033008:intron | 25.0% |
!! | AACTCTTTGTCTTTTCATTT+AGG | - | chr8.4:17447710-17447729 | None:intergenic | 25.0% |
!!! | CTTAGCTTTAAGATGATTTT+TGG | + | chr8.4:17446335-17446354 | MS.gene033008:intron | 25.0% |
!!! | GAATTTTGTTTAAAATGCAC+CGG | + | chr8.4:17445261-17445280 | MS.gene033008:intron | 25.0% |
!!! | GTAGATCTGAAGTTTTTTAT+TGG | - | chr8.4:17446237-17446256 | None:intergenic | 25.0% |
!!! | GTTTACTTTTTCTTGTTCAT+TGG | + | chr8.4:17447944-17447963 | MS.gene033008:CDS | 25.0% |
!!! | TGTCAATATGCAATTTTTTC+AGG | - | chr8.4:17447635-17447654 | None:intergenic | 25.0% |
AAAAATGGTATATGTTCGCT+TGG | + | chr8.4:17447043-17447062 | MS.gene033008:intron | 30.0% | |
AAAAGATTCTCAACCAAGAA+AGG | - | chr8.4:17446210-17446229 | None:intergenic | 30.0% | |
AACCTATAATTGTGCAGTAA+AGG | - | chr8.4:17447818-17447837 | None:intergenic | 30.0% | |
ACAAAATGTCTTATCCCATT+AGG | + | chr8.4:17445199-17445218 | MS.gene033008:intron | 30.0% | |
AGATGACTTAACATTCAGTA+TGG | - | chr8.4:17447115-17447134 | None:intergenic | 30.0% | |
AGCAACATTGTTGGAATATT+GGG | - | chr8.4:17447884-17447903 | None:intergenic | 30.0% | |
ATATTATACGCCAAAGGTTA+AGG | - | chr8.4:17445711-17445730 | None:intergenic | 30.0% | |
ATTATGAATTCTGCTGAAAC+TGG | + | chr8.4:17446849-17446868 | MS.gene033008:CDS | 30.0% | |
CAGCATTTATATTCCTTTCT+TGG | + | chr8.4:17446194-17446213 | MS.gene033008:intron | 30.0% | |
CTATAAAAGTTCCATACAAC+AGG | + | chr8.4:17446019-17446038 | MS.gene033008:intron | 30.0% | |
GAATGTTAAGTCATCTACAA+AGG | + | chr8.4:17447119-17447138 | MS.gene033008:intron | 30.0% | |
GTGCAGTAAAGGAAAATAAA+TGG | - | chr8.4:17447807-17447826 | None:intergenic | 30.0% | |
TATTATACGCCAAAGGTTAA+GGG | - | chr8.4:17445710-17445729 | None:intergenic | 30.0% | |
TCAACGGAATAAAACCTAAT+GGG | - | chr8.4:17445216-17445235 | None:intergenic | 30.0% | |
TGGCGTATAATATAGATTAG+TGG | + | chr8.4:17445718-17445737 | MS.gene033008:intron | 30.0% | |
TTACTGCACAATTATAGGTT+TGG | + | chr8.4:17447818-17447837 | MS.gene033008:intron | 30.0% | |
TTATATCCTTCAAGGCATAA+TGG | + | chr8.4:17447481-17447500 | MS.gene033008:intron | 30.0% | |
TTCAACGGAATAAAACCTAA+TGG | - | chr8.4:17445217-17445236 | None:intergenic | 30.0% | |
TTCCTTTACTGCACAATTAT+AGG | + | chr8.4:17447813-17447832 | MS.gene033008:intron | 30.0% | |
! | ATGCTTCTGAAGAAGAAATT+TGG | + | chr8.4:17446568-17446587 | MS.gene033008:CDS | 30.0% |
! | CAAATAGTAAGGGTTTGTTT+GGG | + | chr8.4:17445309-17445328 | MS.gene033008:intron | 30.0% |
! | CTTGTTGTAAGCAAATAGTA+AGG | + | chr8.4:17445298-17445317 | MS.gene033008:intron | 30.0% |
! | TGCTTCTGAAGAAGAAATTT+GGG | + | chr8.4:17446569-17446588 | MS.gene033008:CDS | 30.0% |
!! | GAACTTGATCTTTGATTTGA+TGG | + | chr8.4:17446128-17446147 | MS.gene033008:intron | 30.0% |
!! | TCACTAAAGTCTTATTAGCA+AGG | - | chr8.4:17447217-17447236 | None:intergenic | 30.0% |
!! | TTGGAGGAATAATTTTCAAG+TGG | - | chr8.4:17447013-17447032 | None:intergenic | 30.0% |
!! | TTTCAATCTCCGATTTTAGT+TGG | + | chr8.4:17446080-17446099 | MS.gene033008:intron | 30.0% |
!!! | ATGCCTGTAGGTTATTTTTT+GGG | + | chr8.4:17445883-17445902 | MS.gene033008:intron | 30.0% |
!!! | TATGCCTGTAGGTTATTTTT+TGG | + | chr8.4:17445882-17445901 | MS.gene033008:intron | 30.0% |
AATATGCCATTATGCCTTGA+AGG | - | chr8.4:17447490-17447509 | None:intergenic | 35.0% | |
ACAAGTGCAAAACTAAAAGC+CGG | - | chr8.4:17445283-17445302 | None:intergenic | 35.0% | |
ACTTAGTACGAAACGAAACT+TGG | - | chr8.4:17444997-17445016 | None:intergenic | 35.0% | |
ACTTTAGTGACTGCTATCTT+TGG | + | chr8.4:17447227-17447246 | MS.gene033008:intron | 35.0% | |
ATTCTTTCTTCCTAGGCTTT+AGG | + | chr8.4:17447148-17447167 | MS.gene033008:intron | 35.0% | |
CAAAGAGAAACAATCTTCTG+AGG | - | chr8.4:17446809-17446828 | None:intergenic | 35.0% | |
CAAGGCATAATGGCATATTA+AGG | + | chr8.4:17447491-17447510 | MS.gene033008:intron | 35.0% | |
CAATTATAAGGATAGAGGGA+AGG | + | chr8.4:17445984-17446003 | MS.gene033008:intron | 35.0% | |
CAGCAACATTGTTGGAATAT+TGG | - | chr8.4:17447885-17447904 | None:intergenic | 35.0% | |
CATAATGGCATATTAAGGAC+AGG | + | chr8.4:17447496-17447515 | MS.gene033008:intron | 35.0% | |
GGTGAATATTCTTTCTTCCT+AGG | + | chr8.4:17447141-17447160 | MS.gene033008:intron | 35.0% | |
GTTTGTTTGGGAATTTAGGA+GGG | + | chr8.4:17445321-17445340 | MS.gene033008:intron | 35.0% | |
TCAAATCAAACCTGAAAAGC+AGG | - | chr8.4:17446876-17446895 | None:intergenic | 35.0% | |
TCTTAAGGTTCACCTATTCT+TGG | + | chr8.4:17447548-17447567 | MS.gene033008:intron | 35.0% | |
TGACAAATGACAAGTACATC+AGG | - | chr8.4:17447177-17447196 | None:intergenic | 35.0% | |
TGGGACATTACCTGTATAAA+AGG | - | chr8.4:17446493-17446512 | None:intergenic | 35.0% | |
TTAAGGATATAGGAGGAAGA+AGG | - | chr8.4:17444859-17444878 | None:intergenic | 35.0% | |
TTTGTTTGGGAATTTAGGAG+GGG | + | chr8.4:17445322-17445341 | MS.gene033008:intron | 35.0% | |
! | AAGGGTTTGTTTGGGAATTT+AGG | + | chr8.4:17445317-17445336 | MS.gene033008:intron | 35.0% |
! | ATACGTGCATCCTTTTATAC+AGG | + | chr8.4:17446480-17446499 | MS.gene033008:intron | 35.0% |
! | ATTGTTTCTCTTTGCCTTCA+TGG | + | chr8.4:17446815-17446834 | MS.gene033008:CDS | 35.0% |
! | CAAGTTGAAGAAGAAAGTTG+AGG | + | chr8.4:17446722-17446741 | MS.gene033008:CDS | 35.0% |
! | CTTCTGAAGAAGAAATTTGG+GGG | + | chr8.4:17446571-17446590 | MS.gene033008:CDS | 35.0% |
! | CTTCTGAGGATAATTTCAGT+TGG | - | chr8.4:17446795-17446814 | None:intergenic | 35.0% |
! | GCAAATAGTAAGGGTTTGTT+TGG | + | chr8.4:17445308-17445327 | MS.gene033008:intron | 35.0% |
! | GCTTCTGAAGAAGAAATTTG+GGG | + | chr8.4:17446570-17446589 | MS.gene033008:CDS | 35.0% |
! | GTCTTCTATTTTCCACCTTA+TGG | + | chr8.4:17446434-17446453 | MS.gene033008:intron | 35.0% |
! | TTAATGCTTTTGGATTCTGC+AGG | + | chr8.4:17444933-17444952 | MS.gene033008:intron | 35.0% |
! | TTCAAGTCTTCCAGTCTTTT+TGG | + | chr8.4:17447394-17447413 | MS.gene033008:intron | 35.0% |
! | TTGATGGTCATAGTAATGAG+TGG | + | chr8.4:17446144-17446163 | MS.gene033008:intron | 35.0% |
! | TTGTTTCTCTTTGCCTTCAT+GGG | + | chr8.4:17446816-17446835 | MS.gene033008:CDS | 35.0% |
!! | TTTCTTCTTCAGAAGCATCA+TGG | - | chr8.4:17446566-17446585 | None:intergenic | 35.0% |
!!! | ATGCAATTTTTTCAGGCACA+TGG | - | chr8.4:17447628-17447647 | None:intergenic | 35.0% |
!!! | GAAGAAGGAGTACAGTTTTT+TGG | - | chr8.4:17444844-17444863 | None:intergenic | 35.0% |
!!! | TGCAATCCTAATTTTTTGGC+TGG | - | chr8.4:17446059-17446078 | None:intergenic | 35.0% |
!!! | TGCCTGTAGGTTATTTTTTG+GGG | + | chr8.4:17445884-17445903 | MS.gene033008:intron | 35.0% |
!!! | TGTAGGTTATTTTTTGGGGA+GGG | + | chr8.4:17445888-17445907 | MS.gene033008:intron | 35.0% |
AATTCCCCAGAGTTAGTGTT+TGG | + | chr8.4:17446514-17446533 | MS.gene033008:CDS | 40.0% | |
ACATAGGTGATACCTCCATA+TGG | - | chr8.4:17445034-17445053 | None:intergenic | 40.0% | |
AGCAATGATCCCTTAACCTT+TGG | + | chr8.4:17445698-17445717 | MS.gene033008:intron | 40.0% | |
AGGGGAGGGTTTAAAAACTA+GGG | + | chr8.4:17445340-17445359 | MS.gene033008:intron | 40.0% | |
ATTCCCCAGAGTTAGTGTTT+GGG | + | chr8.4:17446515-17446534 | MS.gene033008:CDS | 40.0% | |
ATTGGGTGAGTGGTATAACT+TGG | + | chr8.4:17447747-17447766 | MS.gene033008:intron | 40.0% | |
CAGTACTATTCTCTTGCTAC+AGG | + | chr8.4:17447653-17447672 | MS.gene033008:intron | 40.0% | |
CCAACGATGTTAAGAGTTCA+AGG | - | chr8.4:17447922-17447941 | None:intergenic | 40.0% | |
CCTTGAACTCTTAACATCGT+TGG | + | chr8.4:17447919-17447938 | MS.gene033008:CDS | 40.0% | |
CTCCCCAAAAAATAACCTAC+AGG | - | chr8.4:17445889-17445908 | None:intergenic | 40.0% | |
CTGAGGATAATTTCAGTTGG+TGG | - | chr8.4:17446792-17446811 | None:intergenic | 40.0% | |
GAACAACTGTAATTCACCCA+CGG | - | chr8.4:17447091-17447110 | None:intergenic | 40.0% | |
GAGGGTTTAAAAACTAGGGA+AGG | + | chr8.4:17445344-17445363 | MS.gene033008:intron | 40.0% | |
GATACACTTCCACGATTCAA+CGG | - | chr8.4:17445232-17445251 | None:intergenic | 40.0% | |
GCTTTGATAAGTATGCCTGT+AGG | + | chr8.4:17445871-17445890 | MS.gene033008:intron | 40.0% | |
GGTTTAAAAACTAGGGAAGG+AGG | + | chr8.4:17445347-17445366 | MS.gene033008:intron | 40.0% | |
TAAGGACAGGTGAATGTGTT+TGG | + | chr8.4:17447509-17447528 | MS.gene033008:intron | 40.0% | |
TACATGCTGAGAAGCAAACA+AGG | + | chr8.4:17445849-17445868 | MS.gene033008:intron | 40.0% | |
TACTATTCTCTTGCTACAGG+TGG | + | chr8.4:17447656-17447675 | MS.gene033008:intron | 40.0% | |
TCCTCTTCTAGTAACTAGCT+GGG | + | chr8.4:17446298-17446317 | MS.gene033008:intron | 40.0% | |
TCCTGACCAGCCAAAAAATT+AGG | + | chr8.4:17446050-17446069 | MS.gene033008:intron | 40.0% | |
TCTTGTGGCTATCAGACTTT+CGG | + | chr8.4:17447302-17447321 | MS.gene033008:intron | 40.0% | |
TGCAATCCCGCATTTATATG+TGG | + | chr8.4:17445529-17445548 | MS.gene033008:intron | 40.0% | |
TTTAGCACATTCTTGACCCA+TGG | - | chr8.4:17446756-17446775 | None:intergenic | 40.0% | |
TTTCTGTTGCAACAGTATGC+TGG | + | chr8.4:17446603-17446622 | MS.gene033008:CDS | 40.0% | |
! | ATTCCTTGTATTTTCCCGGA+GGG | - | chr8.4:17444960-17444979 | None:intergenic | 40.0% |
! | CAGTTGGCTCCAACTAAAAT+CGG | - | chr8.4:17446092-17446111 | None:intergenic | 40.0% |
! | GGTTTGTTTGGGAATTTAGG+AGG | + | chr8.4:17445320-17445339 | MS.gene033008:intron | 40.0% |
! | TGGGATTCCTTGTATTTTCC+CGG | - | chr8.4:17444964-17444983 | None:intergenic | 40.0% |
! | TTATAGGTTTGGAGCTCTTG+TGG | + | chr8.4:17447829-17447848 | MS.gene033008:intron | 40.0% |
!! | ACACTAACTCTGGGGAATTT+TGG | - | chr8.4:17446513-17446532 | None:intergenic | 40.0% |
!! | CACTAACTCTGGGGAATTTT+GGG | - | chr8.4:17446512-17446531 | None:intergenic | 40.0% |
!! | TGATGGCTAGTTTCGTACAA+AGG | + | chr8.4:17446673-17446692 | MS.gene033008:CDS | 40.0% |
!!! | AGGAGTACAGTTTTTTGGAG+AGG | - | chr8.4:17444839-17444858 | None:intergenic | 40.0% |
!!! | CAGTTTTTTGGAGAGGAAAG+CGG | - | chr8.4:17444832-17444851 | None:intergenic | 40.0% |
!!! | CTGTAGGTTATTTTTTGGGG+AGG | + | chr8.4:17445887-17445906 | MS.gene033008:intron | 40.0% |
!!! | GGTTTTATTCCGTTGAATCG+TGG | + | chr8.4:17445220-17445239 | MS.gene033008:intron | 40.0% |
!!! | GTAGGTTATTTTTTGGGGAG+GGG | + | chr8.4:17445889-17445908 | MS.gene033008:intron | 40.0% |
!!! | TAGGTTATTTTTTGGGGAGG+GGG | + | chr8.4:17445890-17445909 | MS.gene033008:intron | 40.0% |
!!! | TCCTAATTTTTTGGCTGGTC+AGG | - | chr8.4:17446054-17446073 | None:intergenic | 40.0% |
AAATGACGTCCTGCTTAGCT+TGG | - | chr8.4:17445941-17445960 | None:intergenic | 45.0% | |
AACAGTATGCTGGACATGAG+AGG | + | chr8.4:17446613-17446632 | MS.gene033008:CDS | 45.0% | |
AAGAGTTCAAGGCTCCAAGT+TGG | - | chr8.4:17447911-17447930 | None:intergenic | 45.0% | |
AAGCATCATGGCTAACACCA+AGG | - | chr8.4:17446554-17446573 | None:intergenic | 45.0% | |
AATGACGTCCTGCTTAGCTT+GGG | - | chr8.4:17445940-17445959 | None:intergenic | 45.0% | |
ACCCAGCTAGTTACTAGAAG+AGG | - | chr8.4:17446302-17446321 | None:intergenic | 45.0% | |
ACTGCAACATCAGTTCAAGC+TGG | + | chr8.4:17445587-17445606 | MS.gene033008:intron | 45.0% | |
AGAGTTCAAGGCTCCAAGTT+GGG | - | chr8.4:17447910-17447929 | None:intergenic | 45.0% | |
AGCTTGAACTGATGTTGCAG+TGG | - | chr8.4:17445588-17445607 | None:intergenic | 45.0% | |
AGGAGGAAGCTGAAGGAATA+TGG | + | chr8.4:17445364-17445383 | MS.gene033008:intron | 45.0% | |
AGGATCCCAAACACTAACTC+TGG | - | chr8.4:17446523-17446542 | None:intergenic | 45.0% | |
ATCCTGAAGGTGGAAAAGGA+GGG | - | chr8.4:17445676-17445695 | None:intergenic | 45.0% | |
ATCTACCATTGCGGCACTAT+AGG | + | chr8.4:17445505-17445524 | MS.gene033008:intron | 45.0% | |
CGCTTCACAAATTGCTATGG+CGG | - | chr8.4:17445483-17445502 | None:intergenic | 45.0% | |
CTACATCCTGAAGGTGGAAA+AGG | - | chr8.4:17445680-17445699 | None:intergenic | 45.0% | |
CTATTCTTGGAGTCACGTCA+GGG | + | chr8.4:17447561-17447580 | MS.gene033008:intron | 45.0% | |
GAAACTTGGCGAAACGTTGT+GGG | - | chr8.4:17444983-17445002 | None:intergenic | 45.0% | |
GAGGGGAGGGTTTAAAAACT+AGG | + | chr8.4:17445339-17445358 | MS.gene033008:intron | 45.0% | |
GATCCCAAACACTAACTCTG+GGG | - | chr8.4:17446521-17446540 | None:intergenic | 45.0% | |
GGATCATTGCTACATCCTGA+AGG | - | chr8.4:17445689-17445708 | None:intergenic | 45.0% | |
GGATCCCAAACACTAACTCT+GGG | - | chr8.4:17446522-17446541 | None:intergenic | 45.0% | |
GTCCTCTTCTAGTAACTAGC+TGG | + | chr8.4:17446297-17446316 | MS.gene033008:intron | 45.0% | |
TAGTAACTAGCTGGGTGGTT+TGG | + | chr8.4:17446306-17446325 | MS.gene033008:intron | 45.0% | |
TATAGTGCCGCAATGGTAGA+TGG | - | chr8.4:17445506-17445525 | None:intergenic | 45.0% | |
TATTCTTGGAGTCACGTCAG+GGG | + | chr8.4:17447562-17447581 | MS.gene033008:intron | 45.0% | |
TCATTGCTACATCCTGAAGG+TGG | - | chr8.4:17445686-17445705 | None:intergenic | 45.0% | |
TCTTCTAGTAACTAGCTGGG+TGG | + | chr8.4:17446301-17446320 | MS.gene033008:intron | 45.0% | |
TGAAATAGCCCAAGCTAAGC+AGG | + | chr8.4:17445929-17445948 | MS.gene033008:intron | 45.0% | |
TGGCGCTTCACAAATTGCTA+TGG | - | chr8.4:17445486-17445505 | None:intergenic | 45.0% | |
TTTCAGAATAGCCACTGAGC+TGG | + | chr8.4:17447274-17447293 | MS.gene033008:intron | 45.0% | |
TTTCTCTTTGCCTTCATGGG+TGG | + | chr8.4:17446819-17446838 | MS.gene033008:CDS | 45.0% | |
TTTGGGAATTTAGGAGGGGA+GGG | + | chr8.4:17445326-17445345 | MS.gene033008:intron | 45.0% | |
! | CTGTTAGATAGTGGTCATCG+TGG | + | chr8.4:17445446-17445465 | MS.gene033008:intron | 45.0% |
! | GAGCTAGTGCTGTTAGATAG+TGG | + | chr8.4:17445437-17445456 | MS.gene033008:intron | 45.0% |
! | GAGGAGCGTAGAATCAATAG+AGG | + | chr8.4:17446632-17446651 | MS.gene033008:CDS | 45.0% |
! | GATTCCTTGTATTTTCCCGG+AGG | - | chr8.4:17444961-17444980 | None:intergenic | 45.0% |
! | TGGCTAGAGCGTTCGTTATT+GGG | + | chr8.4:17447730-17447749 | MS.gene033008:CDS | 45.0% |
! | TTCCTTGTATTTTCCCGGAG+GGG | - | chr8.4:17444959-17444978 | None:intergenic | 45.0% |
! | TTGGCTAGAGCGTTCGTTAT+TGG | + | chr8.4:17447729-17447748 | MS.gene033008:CDS | 45.0% |
!! | TCTGGCAGTTTATGGTGGAT+TGG | - | chr8.4:17445563-17445582 | None:intergenic | 45.0% |
!! | TGAAACTGGACCTGCTTTTC+AGG | + | chr8.4:17446863-17446882 | MS.gene033008:CDS | 45.0% |
!! | TGGCTAGTTTCGTACAAAGG+AGG | + | chr8.4:17446676-17446695 | MS.gene033008:CDS | 45.0% |
!!! | TTTTTTGGAGAGGAAAGCGG+TGG | - | chr8.4:17444829-17444848 | None:intergenic | 45.0% |
!! | ATAAAAAAATAAAGAAATAT+AGG | + | chr8.4:17446973-17446992 | MS.gene033008:intron | 5.0% |
ACAAGACATGACCAGCTCAG+TGG | - | chr8.4:17447288-17447307 | None:intergenic | 50.0% | |
ACTGAGCTGGTCATGTCTTG+TGG | + | chr8.4:17447287-17447306 | MS.gene033008:intron | 50.0% | |
ACTGATGTTGCAGTGGTGTC+TGG | - | chr8.4:17445581-17445600 | None:intergenic | 50.0% | |
AGCACATTCTTGACCCATGG+TGG | - | chr8.4:17446753-17446772 | None:intergenic | 50.0% | |
AGCGTTCGTTATTGGGTGAG+TGG | + | chr8.4:17447737-17447756 | MS.gene033008:intron | 50.0% | |
AGGAAAGCGGTGGCGAAATT+GGG | - | chr8.4:17444819-17444838 | None:intergenic | 50.0% | |
AGTCACGTCAGGGGACATTA+TGG | + | chr8.4:17447571-17447590 | MS.gene033008:intron | 50.0% | |
CAACTGTCACTCTGTCGAAG+AGG | + | chr8.4:17446106-17446125 | MS.gene033008:intron | 50.0% | |
CACATTCTTGACCCATGGTG+GGG | - | chr8.4:17446751-17446770 | None:intergenic | 50.0% | |
CAGTGGTGTCTGGCAGTTTA+TGG | - | chr8.4:17445571-17445590 | None:intergenic | 50.0% | |
CATCAGGCATCCTAAAGCCT+AGG | - | chr8.4:17447161-17447180 | None:intergenic | 50.0% | |
CATCCTGAAGGTGGAAAAGG+AGG | - | chr8.4:17445677-17445696 | None:intergenic | 50.0% | |
CCTATTCTTGGAGTCACGTC+AGG | + | chr8.4:17447560-17447579 | MS.gene033008:intron | 50.0% | |
CCTGACGTGACTCCAAGAAT+AGG | - | chr8.4:17447563-17447582 | None:intergenic | 50.0% | |
CGAAACTTGGCGAAACGTTG+TGG | - | chr8.4:17444984-17445003 | None:intergenic | 50.0% | |
CTAGCTCAACAACCTGTGCT+TGG | - | chr8.4:17445424-17445443 | None:intergenic | 50.0% | |
CTCTTCGACAGAGTGACAGT+TGG | - | chr8.4:17446108-17446127 | None:intergenic | 50.0% | |
GATGTACTAGAGCCAAGCAC+AGG | + | chr8.4:17445409-17445428 | MS.gene033008:intron | 50.0% | |
GCACATTCTTGACCCATGGT+GGG | - | chr8.4:17446752-17446771 | None:intergenic | 50.0% | |
GCTAAGCAGGACGTCATTTC+AGG | + | chr8.4:17445942-17445961 | MS.gene033008:intron | 50.0% | |
GCTACAGGTGGCAATCTCTT+TGG | + | chr8.4:17447668-17447687 | MS.gene033008:intron | 50.0% | |
GCTGTAGACACACCATATGG+AGG | + | chr8.4:17445019-17445038 | MS.gene033008:CDS | 50.0% | |
GTTTGGGAATTTAGGAGGGG+AGG | + | chr8.4:17445325-17445344 | MS.gene033008:intron | 50.0% | |
TGAAGGTGGAAAAGGAGGGT+GGG | - | chr8.4:17445672-17445691 | None:intergenic | 50.0% | |
TGCAACCTATAGTGCCGCAA+TGG | - | chr8.4:17445513-17445532 | None:intergenic | 50.0% | |
TGCGCTGTAGACACACCATA+TGG | + | chr8.4:17445016-17445035 | MS.gene033008:CDS | 50.0% | |
TGGTGTCTGGCAGTTTATGG+TGG | - | chr8.4:17445568-17445587 | None:intergenic | 50.0% | |
! | AAGGATAGAGGGAAGGCATG+CGG | + | chr8.4:17445991-17446010 | MS.gene033008:intron | 50.0% |
! | ATGGGTCTCTGGTTCATTGC+TGG | + | chr8.4:17447856-17447875 | MS.gene033008:CDS | 50.0% |
! | TGAAGCGCCATCTACCATTG+CGG | + | chr8.4:17445496-17445515 | MS.gene033008:intron | 50.0% |
AAGTTGAGGAGTCCCCACCA+TGG | + | chr8.4:17446736-17446755 | MS.gene033008:CDS | 55.0% | |
AATGCTCCAGCCACCCATGA+AGG | - | chr8.4:17446832-17446851 | None:intergenic | 55.0% | |
AGTTGAGGAGTCCCCACCAT+GGG | + | chr8.4:17446737-17446756 | MS.gene033008:CDS | 55.0% | |
CAATGTTGCTGCGCCCAACT+TGG | + | chr8.4:17447894-17447913 | MS.gene033008:CDS | 55.0% | |
CATGGCTAACACCAAGGCGT+CGG | - | chr8.4:17446548-17446567 | None:intergenic | 55.0% | |
CTAGGGAAGGAGGAAGCTGA+AGG | + | chr8.4:17445357-17445376 | MS.gene033008:intron | 55.0% | |
CTGAAGGTGGAAAAGGAGGG+TGG | - | chr8.4:17445673-17445692 | None:intergenic | 55.0% | |
GAGGAAAGCGGTGGCGAAAT+TGG | - | chr8.4:17444820-17444839 | None:intergenic | 55.0% | |
GTTGGGCGCAGCAACATTGT+TGG | - | chr8.4:17447893-17447912 | None:intergenic | 55.0% | |
TCTTTGCCTTCATGGGTGGC+TGG | + | chr8.4:17446823-17446842 | MS.gene033008:CDS | 55.0% | |
TGGAGCTCTTGTGGCTGGAT+GGG | + | chr8.4:17447838-17447857 | MS.gene033008:CDS | 55.0% | |
TTGGAGCTCTTGTGGCTGGA+TGG | + | chr8.4:17447837-17447856 | MS.gene033008:CDS | 55.0% | |
! | AGGATAGAGGGAAGGCATGC+GGG | + | chr8.4:17445992-17446011 | MS.gene033008:intron | 55.0% |
! | AGGTTTGGAGCTCTTGTGGC+TGG | + | chr8.4:17447833-17447852 | MS.gene033008:intron | 55.0% |
! | CACCCTCCTTTTCCACCTTC+AGG | + | chr8.4:17445671-17445690 | MS.gene033008:intron | 55.0% |
! | GGAGCACTCTCCCTGTTGTA+TGG | - | chr8.4:17446033-17446052 | None:intergenic | 55.0% |
!! | CTAACACCAAGGCGTCGGTA+AGG | - | chr8.4:17446543-17446562 | None:intergenic | 55.0% |
CTTGTGGCTGGATGGGTCTC+TGG | + | chr8.4:17447845-17447864 | MS.gene033008:CDS | 60.0% | |
GGAAAAGGAGGGTGGGAGCA+AGG | - | chr8.4:17445665-17445684 | None:intergenic | 60.0% | |
GGCCCCTCCGGGAAAATACA+AGG | + | chr8.4:17444954-17444973 | MS.gene033008:intron | 60.0% | |
TGGGATCCTTACCGACGCCT+TGG | + | chr8.4:17446534-17446553 | MS.gene033008:CDS | 60.0% | |
TTGGATTCTGCAGGCCCCTC+CGG | + | chr8.4:17444942-17444961 | MS.gene033008:intron | 60.0% | |
! | GATAGAGGGAAGGCATGCGG+GGG | + | chr8.4:17445994-17446013 | MS.gene033008:intron | 60.0% |
! | GGATAGAGGGAAGGCATGCG+GGG | + | chr8.4:17445993-17446012 | MS.gene033008:intron | 60.0% |
TGGATTCTGCAGGCCCCTCC+GGG | + | chr8.4:17444943-17444962 | MS.gene033008:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 17444792 | 17447985 | 17444792 | ID=MS.gene033008 |
chr8.4 | mRNA | 17444792 | 17447985 | 17444792 | ID=MS.gene033008.t1;Parent=MS.gene033008 |
chr8.4 | exon | 17444792 | 17444850 | 17444792 | ID=MS.gene033008.t1.exon1;Parent=MS.gene033008.t1 |
chr8.4 | CDS | 17444792 | 17444850 | 17444792 | ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1 |
chr8.4 | exon | 17444955 | 17445040 | 17444955 | ID=MS.gene033008.t1.exon2;Parent=MS.gene033008.t1 |
chr8.4 | CDS | 17444955 | 17445040 | 17444955 | ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1 |
chr8.4 | exon | 17446502 | 17446884 | 17446502 | ID=MS.gene033008.t1.exon3;Parent=MS.gene033008.t1 |
chr8.4 | CDS | 17446502 | 17446884 | 17446502 | ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1 |
chr8.4 | exon | 17447675 | 17447751 | 17447675 | ID=MS.gene033008.t1.exon4;Parent=MS.gene033008.t1 |
chr8.4 | CDS | 17447675 | 17447751 | 17447675 | ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1 |
chr8.4 | exon | 17447835 | 17447985 | 17447835 | ID=MS.gene033008.t1.exon5;Parent=MS.gene033008.t1 |
chr8.4 | CDS | 17447835 | 17447985 | 17447835 | ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1 |
Gene Sequence |
Protein sequence |