AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033008


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033008.t1 MTR_4g112540 98.008 251 5 0 1 251 1 251 0.0 496
MS.gene033008.t1 MTR_8g076220 38.393 224 129 5 33 250 61 281 4.92e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033008.t1 AT5G23040 76.233 223 50 2 32 251 36 258 6.62e-124 353
MS.gene033008.t1 AT5G23040 76.233 223 50 2 32 251 36 258 6.62e-124 353
MS.gene033008.t1 AT3G51140 33.473 239 145 4 17 251 50 278 5.17e-42 145
MS.gene033008.t1 AT3G51140 40.523 153 81 3 54 202 83 229 2.98e-34 123
MS.gene033008.t1 AT2G20920 27.500 200 123 5 38 216 52 250 2.45e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTAACTCTGGGGAATTT+TGG 0.086811 8.4:-17446510 None:intergenic
ATGCTTCTGAAGAAGAAATT+TGG 0.165582 8.4:+17446568 MS.gene033008:CDS
CAGCAACATTGTTGGAATAT+TGG 0.219376 8.4:-17447882 None:intergenic
GAGGAAAGCGGTGGCGAAAT+TGG 0.249902 8.4:-17444817 None:intergenic
TTGGCTAGAGCGTTCGTTAT+TGG 0.284075 8.4:+17447729 MS.gene033008:CDS
GCTACAGGTGGCAATCTCTT+TGG 0.284234 8.4:+17447668 MS.gene033008:intron
ATTGTTTCTCTTTGCCTTCA+TGG 0.298571 8.4:+17446815 MS.gene033008:CDS
GTTGCCACTTCACTTGAAAA+AGG 0.300132 8.4:-17447972 None:intergenic
AGCAACATTGTTGGAATATT+GGG 0.319394 8.4:-17447881 None:intergenic
TGGCTAGAGCGTTCGTTATT+GGG 0.329181 8.4:+17447730 MS.gene033008:CDS
TGCTTCTGAAGAAGAAATTT+GGG 0.335100 8.4:+17446569 MS.gene033008:CDS
TTGGATTCTGCAGGCCCCTC+CGG 0.343652 8.4:+17444942 MS.gene033008:intron
ATGGGTCTCTGGTTCATTGC+TGG 0.351564 8.4:+17447856 MS.gene033008:CDS
AATTCCCCAGAGTTAGTGTT+TGG 0.356525 8.4:+17446514 MS.gene033008:CDS
CTTGTGGCTGGATGGGTCTC+TGG 0.370387 8.4:+17447845 MS.gene033008:CDS
ATTATGAATTCTGCTGAAAC+TGG 0.386488 8.4:+17446849 MS.gene033008:CDS
AAATGAAAAGACAAAGAGTT+TGG 0.389051 8.4:+17447710 MS.gene033008:CDS
TCTTTGCCTTCATGGGTGGC+TGG 0.389646 8.4:+17446823 MS.gene033008:CDS
AGGTTTGGAGCTCTTGTGGC+TGG 0.394881 8.4:+17447833 MS.gene033008:intron
TTGTTTCTCTTTGCCTTCAT+GGG 0.395534 8.4:+17446816 MS.gene033008:CDS
TTGGAGCTCTTGTGGCTGGA+TGG 0.399967 8.4:+17447837 MS.gene033008:CDS
TGGAGCTCTTGTGGCTGGAT+GGG 0.401053 8.4:+17447838 MS.gene033008:CDS
AGGAAAGCGGTGGCGAAATT+GGG 0.406392 8.4:-17444816 None:intergenic
CCAACGATGTTAAGAGTTCA+AGG 0.419073 8.4:-17447919 None:intergenic
CAATGTTGCTGCGCCCAACT+TGG 0.429282 8.4:+17447894 MS.gene033008:CDS
TGGATTCTGCAGGCCCCTCC+GGG 0.429772 8.4:+17444943 MS.gene033008:intron
ATTCCCCAGAGTTAGTGTTT+GGG 0.449394 8.4:+17446515 MS.gene033008:CDS
GAAACTTGGCGAAACGTTGT+GGG 0.450485 8.4:-17444980 None:intergenic
TGGGATCCTTACCGACGCCT+TGG 0.464510 8.4:+17446534 MS.gene033008:CDS
AGGATCCCAAACACTAACTC+TGG 0.471905 8.4:-17446520 None:intergenic
GTTGGGCGCAGCAACATTGT+TGG 0.472629 8.4:-17447890 None:intergenic
CTGAGGATAATTTCAGTTGG+TGG 0.473276 8.4:-17446789 None:intergenic
TTTCTGTTGCAACAGTATGC+TGG 0.473842 8.4:+17446603 MS.gene033008:CDS
AGAGTTCAAGGCTCCAAGTT+GGG 0.476403 8.4:-17447907 None:intergenic
ACTTAGTACGAAACGAAACT+TGG 0.478032 8.4:-17444994 None:intergenic
CGAAACTTGGCGAAACGTTG+TGG 0.490078 8.4:-17444981 None:intergenic
TCAAATCAAACCTGAAAAGC+AGG 0.503028 8.4:-17446873 None:intergenic
TTATAGGTTTGGAGCTCTTG+TGG 0.505560 8.4:+17447829 MS.gene033008:intron
TGCGCTGTAGACACACCATA+TGG 0.511360 8.4:+17445016 MS.gene033008:CDS
TTTCTTCTTCAGAAGCATCA+TGG 0.518629 8.4:-17446563 None:intergenic
ACATAGGTGATACCTCCATA+TGG 0.527025 8.4:-17445031 None:intergenic
TTTCTCTTTGCCTTCATGGG+TGG 0.529189 8.4:+17446819 MS.gene033008:CDS
GGATCCCAAACACTAACTCT+GGG 0.535496 8.4:-17446519 None:intergenic
GGCCCCTCCGGGAAAATACA+AGG 0.538659 8.4:+17444954 MS.gene033008:intron
AATGCTCCAGCCACCCATGA+AGG 0.539964 8.4:-17446829 None:intergenic
CCTTGAACTCTTAACATCGT+TGG 0.541069 8.4:+17447919 MS.gene033008:CDS
CTTCTGAGGATAATTTCAGT+TGG 0.554844 8.4:-17446792 None:intergenic
AGCACATTCTTGACCCATGG+TGG 0.555534 8.4:-17446750 None:intergenic
CACATTCTTGACCCATGGTG+GGG 0.558838 8.4:-17446748 None:intergenic
AAGAGTTCAAGGCTCCAAGT+TGG 0.565418 8.4:-17447908 None:intergenic
TTTAGCACATTCTTGACCCA+TGG 0.565764 8.4:-17446753 None:intergenic
CTAACACCAAGGCGTCGGTA+AGG 0.567021 8.4:-17446540 None:intergenic
GAGGAGCGTAGAATCAATAG+AGG 0.575040 8.4:+17446632 MS.gene033008:CDS
GCACATTCTTGACCCATGGT+GGG 0.578738 8.4:-17446749 None:intergenic
TGATGGCTAGTTTCGTACAA+AGG 0.587486 8.4:+17446673 MS.gene033008:CDS
AGTTGAGGAGTCCCCACCAT+GGG 0.606304 8.4:+17446737 MS.gene033008:CDS
CAAGTTGAAGAAGAAAGTTG+AGG 0.611137 8.4:+17446722 MS.gene033008:CDS
CAAAGAGAAACAATCTTCTG+AGG 0.616936 8.4:-17446806 None:intergenic
CATGGCTAACACCAAGGCGT+CGG 0.618805 8.4:-17446545 None:intergenic
TGGCTAGTTTCGTACAAAGG+AGG 0.635562 8.4:+17446676 MS.gene033008:CDS
AACAGTATGCTGGACATGAG+AGG 0.646098 8.4:+17446613 MS.gene033008:CDS
GCTTCTGAAGAAGAAATTTG+GGG 0.649344 8.4:+17446570 MS.gene033008:CDS
AAGCATCATGGCTAACACCA+AGG 0.688521 8.4:-17446551 None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG 0.688946 8.4:+17446736 MS.gene033008:CDS
CTTCTGAAGAAGAAATTTGG+GGG 0.702966 8.4:+17446571 MS.gene033008:CDS
GCTGTAGACACACCATATGG+AGG 0.724697 8.4:+17445019 MS.gene033008:CDS
GATCCCAAACACTAACTCTG+GGG 0.736381 8.4:-17446518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTTATTTATTCCATA+AGG - chr8.4:17446452-17446471 None:intergenic 10.0%
!! AAATGGTTAACAAAAATTAA+AGG - chr8.4:17447790-17447809 None:intergenic 15.0%
!! AATAAATGAATTAAGGATAT+AGG - chr8.4:17444869-17444888 None:intergenic 15.0%
!! GAAAACTAAATAATATAGAT+AGG - chr8.4:17445167-17445186 None:intergenic 15.0%
!! TAAAAATAACGATAAATTCT+AGG - chr8.4:17445795-17445814 None:intergenic 15.0%
!! AATTTATTTATTCCATAAGG+TGG - chr8.4:17446449-17446468 None:intergenic 20.0%
!! ACATTATGGAAAAGATAATT+TGG + chr8.4:17447585-17447604 MS.gene033008:intron 20.0%
!! ATATAGACTTGTATAAACAA+AGG - chr8.4:17447443-17447462 None:intergenic 20.0%
!! CATGTATTATGAAATGTTTA+GGG - chr8.4:17445835-17445854 None:intergenic 20.0%
!! GTTAGAACAATTTAATCTTA+AGG + chr8.4:17447533-17447552 MS.gene033008:intron 20.0%
!! TAAAATTCCACATATAAATG+CGG - chr8.4:17445539-17445558 None:intergenic 20.0%
!! TAAATTCGAAGATAAAACAT+AGG - chr8.4:17445050-17445069 None:intergenic 20.0%
!! TCCAAAATTGTAGAAAAAAA+TGG + chr8.4:17447028-17447047 MS.gene033008:intron 20.0%
!!! AAATTGCAATCCTAATTTTT+TGG - chr8.4:17446063-17446082 None:intergenic 20.0%
!!! ACCATTTTTTTCTACAATTT+TGG - chr8.4:17447032-17447051 None:intergenic 20.0%
!!! ATTTTTTTCTACAATTTTGG+AGG - chr8.4:17447029-17447048 None:intergenic 20.0%
!!! TCCAAAAGCATTAATTAATA+TGG - chr8.4:17444927-17444946 None:intergenic 20.0%
!!! TCCATATTAATTAATGCTTT+TGG + chr8.4:17444923-17444942 MS.gene033008:intron 20.0%
!!! TGCTTTTGAAAAAATATTGA+TGG + chr8.4:17446656-17446675 MS.gene033008:CDS 20.0%
! AAAACTTTATCCAAAAAGAC+TGG - chr8.4:17447407-17447426 None:intergenic 25.0%
! AAAATTCCACATATAAATGC+GGG - chr8.4:17445538-17445557 None:intergenic 25.0%
! AAATGAAAAGACAAAGAGTT+TGG + chr8.4:17447710-17447729 MS.gene033008:CDS 25.0%
! AAATGAATTAAGGATATAGG+AGG - chr8.4:17444866-17444885 None:intergenic 25.0%
! AACATCAATTATAAGGATAG+AGG + chr8.4:17445979-17445998 MS.gene033008:intron 25.0%
! AATATAGATAGGTGAATATG+TGG - chr8.4:17445156-17445175 None:intergenic 25.0%
! AATATTAATTTCTCAAACCG+TGG + chr8.4:17447071-17447090 MS.gene033008:intron 25.0%
! AATGTTAAGTCATCTACAAA+GGG + chr8.4:17447120-17447139 MS.gene033008:intron 25.0%
! ACATCAATTATAAGGATAGA+GGG + chr8.4:17445980-17445999 MS.gene033008:intron 25.0%
! AGGATATAATAGTGAATAGA+CGG - chr8.4:17447470-17447489 None:intergenic 25.0%
! ATATTAATTTCTCAAACCGT+GGG + chr8.4:17447072-17447091 MS.gene033008:intron 25.0%
! ATTCACTATTATATCCTTCA+AGG + chr8.4:17447473-17447492 MS.gene033008:intron 25.0%
! CAAAAATCATCTTAAAGCTA+AGG - chr8.4:17446337-17446356 None:intergenic 25.0%
! CTATCTTTGGTTATCAATAA+AGG + chr8.4:17447240-17447259 MS.gene033008:intron 25.0%
! GCATGTATTATGAAATGTTT+AGG - chr8.4:17445836-17445855 None:intergenic 25.0%
! TAATCTATATTATACGCCAA+AGG - chr8.4:17445717-17445736 None:intergenic 25.0%
! TAGAAGCAACATCAATTATA+AGG + chr8.4:17445972-17445991 MS.gene033008:intron 25.0%
! TATAAAAGTTCCATACAACA+GGG + chr8.4:17446020-17446039 MS.gene033008:intron 25.0%
! TGAAGCGAATAAATGAATTA+AGG - chr8.4:17444876-17444895 None:intergenic 25.0%
! TTGTTGTAAGCAAATAGTAA+GGG + chr8.4:17445299-17445318 MS.gene033008:intron 25.0%
! TTTATTTGACTATTGCTACT+TGG + chr8.4:17445066-17445085 MS.gene033008:intron 25.0%
!! AACTCTTTGTCTTTTCATTT+AGG - chr8.4:17447710-17447729 None:intergenic 25.0%
!!! CTTAGCTTTAAGATGATTTT+TGG + chr8.4:17446335-17446354 MS.gene033008:intron 25.0%
!!! GAATTTTGTTTAAAATGCAC+CGG + chr8.4:17445261-17445280 MS.gene033008:intron 25.0%
!!! GTAGATCTGAAGTTTTTTAT+TGG - chr8.4:17446237-17446256 None:intergenic 25.0%
!!! GTTTACTTTTTCTTGTTCAT+TGG + chr8.4:17447944-17447963 MS.gene033008:CDS 25.0%
!!! TGTCAATATGCAATTTTTTC+AGG - chr8.4:17447635-17447654 None:intergenic 25.0%
AAAAATGGTATATGTTCGCT+TGG + chr8.4:17447043-17447062 MS.gene033008:intron 30.0%
AAAAGATTCTCAACCAAGAA+AGG - chr8.4:17446210-17446229 None:intergenic 30.0%
AACCTATAATTGTGCAGTAA+AGG - chr8.4:17447818-17447837 None:intergenic 30.0%
ACAAAATGTCTTATCCCATT+AGG + chr8.4:17445199-17445218 MS.gene033008:intron 30.0%
AGATGACTTAACATTCAGTA+TGG - chr8.4:17447115-17447134 None:intergenic 30.0%
AGCAACATTGTTGGAATATT+GGG - chr8.4:17447884-17447903 None:intergenic 30.0%
ATATTATACGCCAAAGGTTA+AGG - chr8.4:17445711-17445730 None:intergenic 30.0%
ATTATGAATTCTGCTGAAAC+TGG + chr8.4:17446849-17446868 MS.gene033008:CDS 30.0%
CAGCATTTATATTCCTTTCT+TGG + chr8.4:17446194-17446213 MS.gene033008:intron 30.0%
CTATAAAAGTTCCATACAAC+AGG + chr8.4:17446019-17446038 MS.gene033008:intron 30.0%
GAATGTTAAGTCATCTACAA+AGG + chr8.4:17447119-17447138 MS.gene033008:intron 30.0%
GTGCAGTAAAGGAAAATAAA+TGG - chr8.4:17447807-17447826 None:intergenic 30.0%
TATTATACGCCAAAGGTTAA+GGG - chr8.4:17445710-17445729 None:intergenic 30.0%
TCAACGGAATAAAACCTAAT+GGG - chr8.4:17445216-17445235 None:intergenic 30.0%
TGGCGTATAATATAGATTAG+TGG + chr8.4:17445718-17445737 MS.gene033008:intron 30.0%
TTACTGCACAATTATAGGTT+TGG + chr8.4:17447818-17447837 MS.gene033008:intron 30.0%
TTATATCCTTCAAGGCATAA+TGG + chr8.4:17447481-17447500 MS.gene033008:intron 30.0%
TTCAACGGAATAAAACCTAA+TGG - chr8.4:17445217-17445236 None:intergenic 30.0%
TTCCTTTACTGCACAATTAT+AGG + chr8.4:17447813-17447832 MS.gene033008:intron 30.0%
! ATGCTTCTGAAGAAGAAATT+TGG + chr8.4:17446568-17446587 MS.gene033008:CDS 30.0%
! CAAATAGTAAGGGTTTGTTT+GGG + chr8.4:17445309-17445328 MS.gene033008:intron 30.0%
! CTTGTTGTAAGCAAATAGTA+AGG + chr8.4:17445298-17445317 MS.gene033008:intron 30.0%
! TGCTTCTGAAGAAGAAATTT+GGG + chr8.4:17446569-17446588 MS.gene033008:CDS 30.0%
!! GAACTTGATCTTTGATTTGA+TGG + chr8.4:17446128-17446147 MS.gene033008:intron 30.0%
!! TCACTAAAGTCTTATTAGCA+AGG - chr8.4:17447217-17447236 None:intergenic 30.0%
!! TTGGAGGAATAATTTTCAAG+TGG - chr8.4:17447013-17447032 None:intergenic 30.0%
!! TTTCAATCTCCGATTTTAGT+TGG + chr8.4:17446080-17446099 MS.gene033008:intron 30.0%
!!! ATGCCTGTAGGTTATTTTTT+GGG + chr8.4:17445883-17445902 MS.gene033008:intron 30.0%
!!! TATGCCTGTAGGTTATTTTT+TGG + chr8.4:17445882-17445901 MS.gene033008:intron 30.0%
AATATGCCATTATGCCTTGA+AGG - chr8.4:17447490-17447509 None:intergenic 35.0%
ACAAGTGCAAAACTAAAAGC+CGG - chr8.4:17445283-17445302 None:intergenic 35.0%
ACTTAGTACGAAACGAAACT+TGG - chr8.4:17444997-17445016 None:intergenic 35.0%
ACTTTAGTGACTGCTATCTT+TGG + chr8.4:17447227-17447246 MS.gene033008:intron 35.0%
ATTCTTTCTTCCTAGGCTTT+AGG + chr8.4:17447148-17447167 MS.gene033008:intron 35.0%
CAAAGAGAAACAATCTTCTG+AGG - chr8.4:17446809-17446828 None:intergenic 35.0%
CAAGGCATAATGGCATATTA+AGG + chr8.4:17447491-17447510 MS.gene033008:intron 35.0%
CAATTATAAGGATAGAGGGA+AGG + chr8.4:17445984-17446003 MS.gene033008:intron 35.0%
CAGCAACATTGTTGGAATAT+TGG - chr8.4:17447885-17447904 None:intergenic 35.0%
CATAATGGCATATTAAGGAC+AGG + chr8.4:17447496-17447515 MS.gene033008:intron 35.0%
GGTGAATATTCTTTCTTCCT+AGG + chr8.4:17447141-17447160 MS.gene033008:intron 35.0%
GTTTGTTTGGGAATTTAGGA+GGG + chr8.4:17445321-17445340 MS.gene033008:intron 35.0%
TCAAATCAAACCTGAAAAGC+AGG - chr8.4:17446876-17446895 None:intergenic 35.0%
TCTTAAGGTTCACCTATTCT+TGG + chr8.4:17447548-17447567 MS.gene033008:intron 35.0%
TGACAAATGACAAGTACATC+AGG - chr8.4:17447177-17447196 None:intergenic 35.0%
TGGGACATTACCTGTATAAA+AGG - chr8.4:17446493-17446512 None:intergenic 35.0%
TTAAGGATATAGGAGGAAGA+AGG - chr8.4:17444859-17444878 None:intergenic 35.0%
TTTGTTTGGGAATTTAGGAG+GGG + chr8.4:17445322-17445341 MS.gene033008:intron 35.0%
! AAGGGTTTGTTTGGGAATTT+AGG + chr8.4:17445317-17445336 MS.gene033008:intron 35.0%
! ATACGTGCATCCTTTTATAC+AGG + chr8.4:17446480-17446499 MS.gene033008:intron 35.0%
! ATTGTTTCTCTTTGCCTTCA+TGG + chr8.4:17446815-17446834 MS.gene033008:CDS 35.0%
! CAAGTTGAAGAAGAAAGTTG+AGG + chr8.4:17446722-17446741 MS.gene033008:CDS 35.0%
! CTTCTGAAGAAGAAATTTGG+GGG + chr8.4:17446571-17446590 MS.gene033008:CDS 35.0%
! CTTCTGAGGATAATTTCAGT+TGG - chr8.4:17446795-17446814 None:intergenic 35.0%
! GCAAATAGTAAGGGTTTGTT+TGG + chr8.4:17445308-17445327 MS.gene033008:intron 35.0%
! GCTTCTGAAGAAGAAATTTG+GGG + chr8.4:17446570-17446589 MS.gene033008:CDS 35.0%
! GTCTTCTATTTTCCACCTTA+TGG + chr8.4:17446434-17446453 MS.gene033008:intron 35.0%
! TTAATGCTTTTGGATTCTGC+AGG + chr8.4:17444933-17444952 MS.gene033008:intron 35.0%
! TTCAAGTCTTCCAGTCTTTT+TGG + chr8.4:17447394-17447413 MS.gene033008:intron 35.0%
! TTGATGGTCATAGTAATGAG+TGG + chr8.4:17446144-17446163 MS.gene033008:intron 35.0%
! TTGTTTCTCTTTGCCTTCAT+GGG + chr8.4:17446816-17446835 MS.gene033008:CDS 35.0%
!! TTTCTTCTTCAGAAGCATCA+TGG - chr8.4:17446566-17446585 None:intergenic 35.0%
!!! ATGCAATTTTTTCAGGCACA+TGG - chr8.4:17447628-17447647 None:intergenic 35.0%
!!! GAAGAAGGAGTACAGTTTTT+TGG - chr8.4:17444844-17444863 None:intergenic 35.0%
!!! TGCAATCCTAATTTTTTGGC+TGG - chr8.4:17446059-17446078 None:intergenic 35.0%
!!! TGCCTGTAGGTTATTTTTTG+GGG + chr8.4:17445884-17445903 MS.gene033008:intron 35.0%
!!! TGTAGGTTATTTTTTGGGGA+GGG + chr8.4:17445888-17445907 MS.gene033008:intron 35.0%
AATTCCCCAGAGTTAGTGTT+TGG + chr8.4:17446514-17446533 MS.gene033008:CDS 40.0%
ACATAGGTGATACCTCCATA+TGG - chr8.4:17445034-17445053 None:intergenic 40.0%
AGCAATGATCCCTTAACCTT+TGG + chr8.4:17445698-17445717 MS.gene033008:intron 40.0%
AGGGGAGGGTTTAAAAACTA+GGG + chr8.4:17445340-17445359 MS.gene033008:intron 40.0%
ATTCCCCAGAGTTAGTGTTT+GGG + chr8.4:17446515-17446534 MS.gene033008:CDS 40.0%
ATTGGGTGAGTGGTATAACT+TGG + chr8.4:17447747-17447766 MS.gene033008:intron 40.0%
CAGTACTATTCTCTTGCTAC+AGG + chr8.4:17447653-17447672 MS.gene033008:intron 40.0%
CCAACGATGTTAAGAGTTCA+AGG - chr8.4:17447922-17447941 None:intergenic 40.0%
CCTTGAACTCTTAACATCGT+TGG + chr8.4:17447919-17447938 MS.gene033008:CDS 40.0%
CTCCCCAAAAAATAACCTAC+AGG - chr8.4:17445889-17445908 None:intergenic 40.0%
CTGAGGATAATTTCAGTTGG+TGG - chr8.4:17446792-17446811 None:intergenic 40.0%
GAACAACTGTAATTCACCCA+CGG - chr8.4:17447091-17447110 None:intergenic 40.0%
GAGGGTTTAAAAACTAGGGA+AGG + chr8.4:17445344-17445363 MS.gene033008:intron 40.0%
GATACACTTCCACGATTCAA+CGG - chr8.4:17445232-17445251 None:intergenic 40.0%
GCTTTGATAAGTATGCCTGT+AGG + chr8.4:17445871-17445890 MS.gene033008:intron 40.0%
GGTTTAAAAACTAGGGAAGG+AGG + chr8.4:17445347-17445366 MS.gene033008:intron 40.0%
TAAGGACAGGTGAATGTGTT+TGG + chr8.4:17447509-17447528 MS.gene033008:intron 40.0%
TACATGCTGAGAAGCAAACA+AGG + chr8.4:17445849-17445868 MS.gene033008:intron 40.0%
TACTATTCTCTTGCTACAGG+TGG + chr8.4:17447656-17447675 MS.gene033008:intron 40.0%
TCCTCTTCTAGTAACTAGCT+GGG + chr8.4:17446298-17446317 MS.gene033008:intron 40.0%
TCCTGACCAGCCAAAAAATT+AGG + chr8.4:17446050-17446069 MS.gene033008:intron 40.0%
TCTTGTGGCTATCAGACTTT+CGG + chr8.4:17447302-17447321 MS.gene033008:intron 40.0%
TGCAATCCCGCATTTATATG+TGG + chr8.4:17445529-17445548 MS.gene033008:intron 40.0%
TTTAGCACATTCTTGACCCA+TGG - chr8.4:17446756-17446775 None:intergenic 40.0%
TTTCTGTTGCAACAGTATGC+TGG + chr8.4:17446603-17446622 MS.gene033008:CDS 40.0%
! ATTCCTTGTATTTTCCCGGA+GGG - chr8.4:17444960-17444979 None:intergenic 40.0%
! CAGTTGGCTCCAACTAAAAT+CGG - chr8.4:17446092-17446111 None:intergenic 40.0%
! GGTTTGTTTGGGAATTTAGG+AGG + chr8.4:17445320-17445339 MS.gene033008:intron 40.0%
! TGGGATTCCTTGTATTTTCC+CGG - chr8.4:17444964-17444983 None:intergenic 40.0%
! TTATAGGTTTGGAGCTCTTG+TGG + chr8.4:17447829-17447848 MS.gene033008:intron 40.0%
!! ACACTAACTCTGGGGAATTT+TGG - chr8.4:17446513-17446532 None:intergenic 40.0%
!! CACTAACTCTGGGGAATTTT+GGG - chr8.4:17446512-17446531 None:intergenic 40.0%
!! TGATGGCTAGTTTCGTACAA+AGG + chr8.4:17446673-17446692 MS.gene033008:CDS 40.0%
!!! AGGAGTACAGTTTTTTGGAG+AGG - chr8.4:17444839-17444858 None:intergenic 40.0%
!!! CAGTTTTTTGGAGAGGAAAG+CGG - chr8.4:17444832-17444851 None:intergenic 40.0%
!!! CTGTAGGTTATTTTTTGGGG+AGG + chr8.4:17445887-17445906 MS.gene033008:intron 40.0%
!!! GGTTTTATTCCGTTGAATCG+TGG + chr8.4:17445220-17445239 MS.gene033008:intron 40.0%
!!! GTAGGTTATTTTTTGGGGAG+GGG + chr8.4:17445889-17445908 MS.gene033008:intron 40.0%
!!! TAGGTTATTTTTTGGGGAGG+GGG + chr8.4:17445890-17445909 MS.gene033008:intron 40.0%
!!! TCCTAATTTTTTGGCTGGTC+AGG - chr8.4:17446054-17446073 None:intergenic 40.0%
AAATGACGTCCTGCTTAGCT+TGG - chr8.4:17445941-17445960 None:intergenic 45.0%
AACAGTATGCTGGACATGAG+AGG + chr8.4:17446613-17446632 MS.gene033008:CDS 45.0%
AAGAGTTCAAGGCTCCAAGT+TGG - chr8.4:17447911-17447930 None:intergenic 45.0%
AAGCATCATGGCTAACACCA+AGG - chr8.4:17446554-17446573 None:intergenic 45.0%
AATGACGTCCTGCTTAGCTT+GGG - chr8.4:17445940-17445959 None:intergenic 45.0%
ACCCAGCTAGTTACTAGAAG+AGG - chr8.4:17446302-17446321 None:intergenic 45.0%
ACTGCAACATCAGTTCAAGC+TGG + chr8.4:17445587-17445606 MS.gene033008:intron 45.0%
AGAGTTCAAGGCTCCAAGTT+GGG - chr8.4:17447910-17447929 None:intergenic 45.0%
AGCTTGAACTGATGTTGCAG+TGG - chr8.4:17445588-17445607 None:intergenic 45.0%
AGGAGGAAGCTGAAGGAATA+TGG + chr8.4:17445364-17445383 MS.gene033008:intron 45.0%
AGGATCCCAAACACTAACTC+TGG - chr8.4:17446523-17446542 None:intergenic 45.0%
ATCCTGAAGGTGGAAAAGGA+GGG - chr8.4:17445676-17445695 None:intergenic 45.0%
ATCTACCATTGCGGCACTAT+AGG + chr8.4:17445505-17445524 MS.gene033008:intron 45.0%
CGCTTCACAAATTGCTATGG+CGG - chr8.4:17445483-17445502 None:intergenic 45.0%
CTACATCCTGAAGGTGGAAA+AGG - chr8.4:17445680-17445699 None:intergenic 45.0%
CTATTCTTGGAGTCACGTCA+GGG + chr8.4:17447561-17447580 MS.gene033008:intron 45.0%
GAAACTTGGCGAAACGTTGT+GGG - chr8.4:17444983-17445002 None:intergenic 45.0%
GAGGGGAGGGTTTAAAAACT+AGG + chr8.4:17445339-17445358 MS.gene033008:intron 45.0%
GATCCCAAACACTAACTCTG+GGG - chr8.4:17446521-17446540 None:intergenic 45.0%
GGATCATTGCTACATCCTGA+AGG - chr8.4:17445689-17445708 None:intergenic 45.0%
GGATCCCAAACACTAACTCT+GGG - chr8.4:17446522-17446541 None:intergenic 45.0%
GTCCTCTTCTAGTAACTAGC+TGG + chr8.4:17446297-17446316 MS.gene033008:intron 45.0%
TAGTAACTAGCTGGGTGGTT+TGG + chr8.4:17446306-17446325 MS.gene033008:intron 45.0%
TATAGTGCCGCAATGGTAGA+TGG - chr8.4:17445506-17445525 None:intergenic 45.0%
TATTCTTGGAGTCACGTCAG+GGG + chr8.4:17447562-17447581 MS.gene033008:intron 45.0%
TCATTGCTACATCCTGAAGG+TGG - chr8.4:17445686-17445705 None:intergenic 45.0%
TCTTCTAGTAACTAGCTGGG+TGG + chr8.4:17446301-17446320 MS.gene033008:intron 45.0%
TGAAATAGCCCAAGCTAAGC+AGG + chr8.4:17445929-17445948 MS.gene033008:intron 45.0%
TGGCGCTTCACAAATTGCTA+TGG - chr8.4:17445486-17445505 None:intergenic 45.0%
TTTCAGAATAGCCACTGAGC+TGG + chr8.4:17447274-17447293 MS.gene033008:intron 45.0%
TTTCTCTTTGCCTTCATGGG+TGG + chr8.4:17446819-17446838 MS.gene033008:CDS 45.0%
TTTGGGAATTTAGGAGGGGA+GGG + chr8.4:17445326-17445345 MS.gene033008:intron 45.0%
! CTGTTAGATAGTGGTCATCG+TGG + chr8.4:17445446-17445465 MS.gene033008:intron 45.0%
! GAGCTAGTGCTGTTAGATAG+TGG + chr8.4:17445437-17445456 MS.gene033008:intron 45.0%
! GAGGAGCGTAGAATCAATAG+AGG + chr8.4:17446632-17446651 MS.gene033008:CDS 45.0%
! GATTCCTTGTATTTTCCCGG+AGG - chr8.4:17444961-17444980 None:intergenic 45.0%
! TGGCTAGAGCGTTCGTTATT+GGG + chr8.4:17447730-17447749 MS.gene033008:CDS 45.0%
! TTCCTTGTATTTTCCCGGAG+GGG - chr8.4:17444959-17444978 None:intergenic 45.0%
! TTGGCTAGAGCGTTCGTTAT+TGG + chr8.4:17447729-17447748 MS.gene033008:CDS 45.0%
!! TCTGGCAGTTTATGGTGGAT+TGG - chr8.4:17445563-17445582 None:intergenic 45.0%
!! TGAAACTGGACCTGCTTTTC+AGG + chr8.4:17446863-17446882 MS.gene033008:CDS 45.0%
!! TGGCTAGTTTCGTACAAAGG+AGG + chr8.4:17446676-17446695 MS.gene033008:CDS 45.0%
!!! TTTTTTGGAGAGGAAAGCGG+TGG - chr8.4:17444829-17444848 None:intergenic 45.0%
!! ATAAAAAAATAAAGAAATAT+AGG + chr8.4:17446973-17446992 MS.gene033008:intron 5.0%
ACAAGACATGACCAGCTCAG+TGG - chr8.4:17447288-17447307 None:intergenic 50.0%
ACTGAGCTGGTCATGTCTTG+TGG + chr8.4:17447287-17447306 MS.gene033008:intron 50.0%
ACTGATGTTGCAGTGGTGTC+TGG - chr8.4:17445581-17445600 None:intergenic 50.0%
AGCACATTCTTGACCCATGG+TGG - chr8.4:17446753-17446772 None:intergenic 50.0%
AGCGTTCGTTATTGGGTGAG+TGG + chr8.4:17447737-17447756 MS.gene033008:intron 50.0%
AGGAAAGCGGTGGCGAAATT+GGG - chr8.4:17444819-17444838 None:intergenic 50.0%
AGTCACGTCAGGGGACATTA+TGG + chr8.4:17447571-17447590 MS.gene033008:intron 50.0%
CAACTGTCACTCTGTCGAAG+AGG + chr8.4:17446106-17446125 MS.gene033008:intron 50.0%
CACATTCTTGACCCATGGTG+GGG - chr8.4:17446751-17446770 None:intergenic 50.0%
CAGTGGTGTCTGGCAGTTTA+TGG - chr8.4:17445571-17445590 None:intergenic 50.0%
CATCAGGCATCCTAAAGCCT+AGG - chr8.4:17447161-17447180 None:intergenic 50.0%
CATCCTGAAGGTGGAAAAGG+AGG - chr8.4:17445677-17445696 None:intergenic 50.0%
CCTATTCTTGGAGTCACGTC+AGG + chr8.4:17447560-17447579 MS.gene033008:intron 50.0%
CCTGACGTGACTCCAAGAAT+AGG - chr8.4:17447563-17447582 None:intergenic 50.0%
CGAAACTTGGCGAAACGTTG+TGG - chr8.4:17444984-17445003 None:intergenic 50.0%
CTAGCTCAACAACCTGTGCT+TGG - chr8.4:17445424-17445443 None:intergenic 50.0%
CTCTTCGACAGAGTGACAGT+TGG - chr8.4:17446108-17446127 None:intergenic 50.0%
GATGTACTAGAGCCAAGCAC+AGG + chr8.4:17445409-17445428 MS.gene033008:intron 50.0%
GCACATTCTTGACCCATGGT+GGG - chr8.4:17446752-17446771 None:intergenic 50.0%
GCTAAGCAGGACGTCATTTC+AGG + chr8.4:17445942-17445961 MS.gene033008:intron 50.0%
GCTACAGGTGGCAATCTCTT+TGG + chr8.4:17447668-17447687 MS.gene033008:intron 50.0%
GCTGTAGACACACCATATGG+AGG + chr8.4:17445019-17445038 MS.gene033008:CDS 50.0%
GTTTGGGAATTTAGGAGGGG+AGG + chr8.4:17445325-17445344 MS.gene033008:intron 50.0%
TGAAGGTGGAAAAGGAGGGT+GGG - chr8.4:17445672-17445691 None:intergenic 50.0%
TGCAACCTATAGTGCCGCAA+TGG - chr8.4:17445513-17445532 None:intergenic 50.0%
TGCGCTGTAGACACACCATA+TGG + chr8.4:17445016-17445035 MS.gene033008:CDS 50.0%
TGGTGTCTGGCAGTTTATGG+TGG - chr8.4:17445568-17445587 None:intergenic 50.0%
! AAGGATAGAGGGAAGGCATG+CGG + chr8.4:17445991-17446010 MS.gene033008:intron 50.0%
! ATGGGTCTCTGGTTCATTGC+TGG + chr8.4:17447856-17447875 MS.gene033008:CDS 50.0%
! TGAAGCGCCATCTACCATTG+CGG + chr8.4:17445496-17445515 MS.gene033008:intron 50.0%
AAGTTGAGGAGTCCCCACCA+TGG + chr8.4:17446736-17446755 MS.gene033008:CDS 55.0%
AATGCTCCAGCCACCCATGA+AGG - chr8.4:17446832-17446851 None:intergenic 55.0%
AGTTGAGGAGTCCCCACCAT+GGG + chr8.4:17446737-17446756 MS.gene033008:CDS 55.0%
CAATGTTGCTGCGCCCAACT+TGG + chr8.4:17447894-17447913 MS.gene033008:CDS 55.0%
CATGGCTAACACCAAGGCGT+CGG - chr8.4:17446548-17446567 None:intergenic 55.0%
CTAGGGAAGGAGGAAGCTGA+AGG + chr8.4:17445357-17445376 MS.gene033008:intron 55.0%
CTGAAGGTGGAAAAGGAGGG+TGG - chr8.4:17445673-17445692 None:intergenic 55.0%
GAGGAAAGCGGTGGCGAAAT+TGG - chr8.4:17444820-17444839 None:intergenic 55.0%
GTTGGGCGCAGCAACATTGT+TGG - chr8.4:17447893-17447912 None:intergenic 55.0%
TCTTTGCCTTCATGGGTGGC+TGG + chr8.4:17446823-17446842 MS.gene033008:CDS 55.0%
TGGAGCTCTTGTGGCTGGAT+GGG + chr8.4:17447838-17447857 MS.gene033008:CDS 55.0%
TTGGAGCTCTTGTGGCTGGA+TGG + chr8.4:17447837-17447856 MS.gene033008:CDS 55.0%
! AGGATAGAGGGAAGGCATGC+GGG + chr8.4:17445992-17446011 MS.gene033008:intron 55.0%
! AGGTTTGGAGCTCTTGTGGC+TGG + chr8.4:17447833-17447852 MS.gene033008:intron 55.0%
! CACCCTCCTTTTCCACCTTC+AGG + chr8.4:17445671-17445690 MS.gene033008:intron 55.0%
! GGAGCACTCTCCCTGTTGTA+TGG - chr8.4:17446033-17446052 None:intergenic 55.0%
!! CTAACACCAAGGCGTCGGTA+AGG - chr8.4:17446543-17446562 None:intergenic 55.0%
CTTGTGGCTGGATGGGTCTC+TGG + chr8.4:17447845-17447864 MS.gene033008:CDS 60.0%
GGAAAAGGAGGGTGGGAGCA+AGG - chr8.4:17445665-17445684 None:intergenic 60.0%
GGCCCCTCCGGGAAAATACA+AGG + chr8.4:17444954-17444973 MS.gene033008:intron 60.0%
TGGGATCCTTACCGACGCCT+TGG + chr8.4:17446534-17446553 MS.gene033008:CDS 60.0%
TTGGATTCTGCAGGCCCCTC+CGG + chr8.4:17444942-17444961 MS.gene033008:intron 60.0%
! GATAGAGGGAAGGCATGCGG+GGG + chr8.4:17445994-17446013 MS.gene033008:intron 60.0%
! GGATAGAGGGAAGGCATGCG+GGG + chr8.4:17445993-17446012 MS.gene033008:intron 60.0%
TGGATTCTGCAGGCCCCTCC+GGG + chr8.4:17444943-17444962 MS.gene033008:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 17444792 17447985 17444792 ID=MS.gene033008
chr8.4 mRNA 17444792 17447985 17444792 ID=MS.gene033008.t1;Parent=MS.gene033008
chr8.4 exon 17444792 17444850 17444792 ID=MS.gene033008.t1.exon1;Parent=MS.gene033008.t1
chr8.4 CDS 17444792 17444850 17444792 ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4 exon 17444955 17445040 17444955 ID=MS.gene033008.t1.exon2;Parent=MS.gene033008.t1
chr8.4 CDS 17444955 17445040 17444955 ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4 exon 17446502 17446884 17446502 ID=MS.gene033008.t1.exon3;Parent=MS.gene033008.t1
chr8.4 CDS 17446502 17446884 17446502 ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4 exon 17447675 17447751 17447675 ID=MS.gene033008.t1.exon4;Parent=MS.gene033008.t1
chr8.4 CDS 17447675 17447751 17447675 ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4 exon 17447835 17447985 17447835 ID=MS.gene033008.t1.exon5;Parent=MS.gene033008.t1
chr8.4 CDS 17447835 17447985 17447835 ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
Gene Sequence

>MS.gene033008

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGTACTCCTTCTTCCTCCTATATCCTTAATTCATTTATTCGCTTCAATTTTCAGTTTAATCACTAATTCAACTTCCATATTAATTAATGCTTTTGGATTCTGCAGGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTATCACCTATGTTTTATCTTCGAATTTATTTGACTATTGCTACTTGGTTCAGTAATCATTAAAATACTAGTAACATGAACAATTTCATTATATTGATCATATCATATGTATCCACATATTCACCTATCTATATTATTTAGTTTTCACAACAATAATAACAAAATGTCTTATCCCATTAGGTTTTATTCCGTTGAATCGTGGAAGTGTATCTAAAACATTGAATTTTGTTTAAAATGCACCGGCTTTTAGTTTTGCACTTGTTGTAAGCAAATAGTAAGGGTTTGTTTGGGAATTTAGGAGGGGAGGGTTTAAAAACTAGGGAAGGAGGAAGCTGAAGGAATATGGAAGCACTAGTTGATTAGCTATTGATGTACTAGAGCCAAGCACAGGTTGTTGAGCTAGTGCTGTTAGATAGTGGTCATCGTGGATTTGTGTCAGCCGCCATAGCAATTTGTGAAGCGCCATCTACCATTGCGGCACTATAGGTTGCAATCCCGCATTTATATGTGGAATTTTAGCCAATCCACCATAAACTGCCAGACACCACTGCAACATCAGTTCAAGCTGGATTTTCTAGTTCATATGCTCAAGCTTCTGAATTTTTTACTTATGTCAAGATTCCTTGCTCCCACCCTCCTTTTCCACCTTCAGGATGTAGCAATGATCCCTTAACCTTTGGCGTATAATATAGATTAGTGGACAGTTCTATTTTCAATGTTTAAGCTATCAAATATATTGAAATTACAATTGCCTAGAATTTATCGTTATTTTTAAGACATTCATCATCATTCCCTAAACATTTCATAATACATGCTGAGAAGCAAACAAGGCTTTGATAAGTATGCCTGTAGGTTATTTTTTGGGGAGGGGGTAGTGAGTACTTAAGTTGAAATAGCCCAAGCTAAGCAGGACGTCATTTCAGGAAACAAATAGAAGCAACATCAATTATAAGGATAGAGGGAAGGCATGCGGGGGCACTATAAAAGTTCCATACAACAGGGAGAGTGCTCCTGACCAGCCAAAAAATTAGGATTGCAATTTCAATCTCCGATTTTAGTTGGAGCCAACTGTCACTCTGTCGAAGAGGAACTTGATCTTTGATTTGATGGTCATAGTAATGAGTGGCAGAGCAGTCATGTTTTCATAGATTGACAGCATTTATATTCCTTTCTTGGTTGAGAATCTTTTATGTCCAATAAAAAACTTCAGATCTACTATTTGATCTCAAGCACAACATTACATTTACTAGTTTTATGTCCTCTTCTAGTAACTAGCTGGGTGGTTTGGAATTTCCTTAGCTTTAAGATGATTTTTGGATCATTGCATCATTATTATTCATATAAAATCAAAAATCATGAAGTCTGTGTTTCTGCTACTTAGTTACACTTCTCTGTCTTCTATTTTCCACCTTATGGAATAAATAAATTTATATGTGTGCATACGTGCATCCTTTTATACAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTTTGATTTGAATTTCTTTCATTATTTCTTTTTGTGCAGTGTATACTCTCAAATGCACAACTCTTGAAAACAAAATTGTATTTTATATATAAAAAAATAAAGAAATATAGGAAATTGCAACTATTCCACTTGAAAATTATTCCTCCAAAATTGTAGAAAAAAATGGTATATGTTCGCTTGGCAATTAATATTAATTTCTCAAACCGTGGGTGAATTACAGTTGTTCTCCATACTGAATGTTAAGTCATCTACAAAGGGTGAATATTCTTTCTTCCTAGGCTTTAGGATGCCTGATGTACTTGTCATTTGTCAAGTTGTCAATTGTCATACCTTGCTAATAAGACTTTAGTGACTGCTATCTTTGGTTATCAATAAAGGCTGTAAATGAATTTCAGAATAGCCACTGAGCTGGTCATGTCTTGTGGCTATCAGACTTTCGGTTATAGTTTTTAACACTTCAACAGTCAAACATAGTTTTGATCTTGATTTGCAACTTGATTGTGCACATTTTCAAGTCTTCCAGTCTTTTTGGATAAAGTTTTGATTTTACGATTACCTTTGTTTATACAAGTCTATATTCTTCCGTCTATTCACTATTATATCCTTCAAGGCATAATGGCATATTAAGGACAGGTGAATGTGTTTGGAGTTAGAACAATTTAATCTTAAGGTTCACCTATTCTTGGAGTCACGTCAGGGGACATTATGGAAAAGATAATTTGGCTTGCTCTCTCTCACTGCCATGTGCCTGAAAAAATTGCATATTGACAGTACTATTCTCTTGCTACAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTGAGTGGTATAACTTGGCTTCGACTTGTGTTTTTCCTTTAATTTTTGTTAACCATTTATTTTCCTTTACTGCACAATTATAGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>MS.gene033008.t1

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK