AlfalfaGEDB | MS.gene033008

M. sativa cultivar XinJiangDaYe / MS.gene033008

KEGG: -
GO: -
PFAM: PF11833.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033008.t1	XP_003609152.1	98	251	5	0	1	251	1	251	1.40E-132	482.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033008.t1	Q9FN50	69.1	256	73	3	2	251	3	258	8.5e-94	344.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033008.t1	G7JT27	98.0	251	5	0	1	251	1	251	1.0e-132	482.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012085	MS.gene033008	PPI
MS.gene017661	MS.gene033008	PPI
MS.gene76469	MS.gene033008	PPI
MS.gene89638	MS.gene033008	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033008.t1	MTR_4g112540	98.008	251	5	0	1	251	1	251	0.0	496
MS.gene033008.t1	MTR_8g076220	38.393	224	129	5	33	250	61	281	4.92e-45	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033008.t1	AT5G23040	76.233	223	50	2	32	251	36	258	6.62e-124	353
MS.gene033008.t1	AT5G23040	76.233	223	50	2	32	251	36	258	6.62e-124	353
MS.gene033008.t1	AT3G51140	33.473	239	145	4	17	251	50	278	5.17e-42	145
MS.gene033008.t1	AT3G51140	40.523	153	81	3	54	202	83	229	2.98e-34	123
MS.gene033008.t1	AT2G20920	27.500	200	123	5	38	216	52	250	2.45e-11	62.8

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Find 67 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAAAGACAAAGAGTT+TGG	0.389051	8.4:+17447710	MS.gene033008:CDS
AACAGTATGCTGGACATGAG+AGG	0.646098	8.4:+17446613	MS.gene033008:CDS
AAGAGTTCAAGGCTCCAAGT+TGG	0.565418	8.4:-17447908	None:intergenic
AAGCATCATGGCTAACACCA+AGG	0.688521	8.4:-17446551	None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG	0.688946	8.4:+17446736	MS.gene033008:CDS
AATGCTCCAGCCACCCATGA+AGG	0.539964	8.4:-17446829	None:intergenic
AATTCCCCAGAGTTAGTGTT+TGG	0.356525	8.4:+17446514	MS.gene033008:CDS
ACACTAACTCTGGGGAATTT+TGG	0.086811	8.4:-17446510	None:intergenic
ACATAGGTGATACCTCCATA+TGG	0.527025	8.4:-17445031	None:intergenic
ACTTAGTACGAAACGAAACT+TGG	0.478032	8.4:-17444994	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGTATATGTTCGCT+TGG	+	chr8.4:17447043-17447062	MS.gene033008:intron	30.0%
AAAAGATTCTCAACCAAGAA+AGG	-	chr8.4:17446210-17446229	None:intergenic	30.0%
AACCTATAATTGTGCAGTAA+AGG	-	chr8.4:17447818-17447837	None:intergenic	30.0%
ACAAAATGTCTTATCCCATT+AGG	+	chr8.4:17445199-17445218	MS.gene033008:intron	30.0%
AGATGACTTAACATTCAGTA+TGG	-	chr8.4:17447115-17447134	None:intergenic	30.0%
AGCAACATTGTTGGAATATT+GGG	-	chr8.4:17447884-17447903	None:intergenic	30.0%
ATATTATACGCCAAAGGTTA+AGG	-	chr8.4:17445711-17445730	None:intergenic	30.0%
ATTATGAATTCTGCTGAAAC+TGG	+	chr8.4:17446849-17446868	MS.gene033008:CDS	30.0%
CAGCATTTATATTCCTTTCT+TGG	+	chr8.4:17446194-17446213	MS.gene033008:intron	30.0%
CTATAAAAGTTCCATACAAC+AGG	+	chr8.4:17446019-17446038	MS.gene033008:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	17444792	17447985	17444792	ID=MS.gene033008
chr8.4	mRNA	17444792	17447985	17444792	ID=MS.gene033008.t1;Parent=MS.gene033008
chr8.4	exon	17444792	17444850	17444792	ID=MS.gene033008.t1.exon1;Parent=MS.gene033008.t1
chr8.4	CDS	17444792	17444850	17444792	ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4	exon	17444955	17445040	17444955	ID=MS.gene033008.t1.exon2;Parent=MS.gene033008.t1
chr8.4	CDS	17444955	17445040	17444955	ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4	exon	17446502	17446884	17446502	ID=MS.gene033008.t1.exon3;Parent=MS.gene033008.t1
chr8.4	CDS	17446502	17446884	17446502	ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4	exon	17447675	17447751	17447675	ID=MS.gene033008.t1.exon4;Parent=MS.gene033008.t1
chr8.4	CDS	17447675	17447751	17447675	ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1
chr8.4	exon	17447835	17447985	17447835	ID=MS.gene033008.t1.exon5;Parent=MS.gene033008.t1
chr8.4	CDS	17447835	17447985	17447835	ID=cds.MS.gene033008.t1;Parent=MS.gene033008.t1

Gene Sequence

>MS.gene033008

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGTACTCCTTCTTCCTCCTATATCCTTAATTCATTTATTCGCTTCAATTTTCAGTTTAATCACTAATTCAACTTCCATATTAATTAATGCTTTTGGATTCTGCAGGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTATCACCTATGTTTTATCTTCGAATTTATTTGACTATTGCTACTTGGTTCAGTAATCATTAAAATACTAGTAACATGAACAATTTCATTATATTGATCATATCATATGTATCCACATATTCACCTATCTATATTATTTAGTTTTCACAACAATAATAACAAAATGTCTTATCCCATTAGGTTTTATTCCGTTGAATCGTGGAAGTGTATCTAAAACATTGAATTTTGTTTAAAATGCACCGGCTTTTAGTTTTGCACTTGTTGTAAGCAAATAGTAAGGGTTTGTTTGGGAATTTAGGAGGGGAGGGTTTAAAAACTAGGGAAGGAGGAAGCTGAAGGAATATGGAAGCACTAGTTGATTAGCTATTGATGTACTAGAGCCAAGCACAGGTTGTTGAGCTAGTGCTGTTAGATAGTGGTCATCGTGGATTTGTGTCAGCCGCCATAGCAATTTGTGAAGCGCCATCTACCATTGCGGCACTATAGGTTGCAATCCCGCATTTATATGTGGAATTTTAGCCAATCCACCATAAACTGCCAGACACCACTGCAACATCAGTTCAAGCTGGATTTTCTAGTTCATATGCTCAAGCTTCTGAATTTTTTACTTATGTCAAGATTCCTTGCTCCCACCCTCCTTTTCCACCTTCAGGATGTAGCAATGATCCCTTAACCTTTGGCGTATAATATAGATTAGTGGACAGTTCTATTTTCAATGTTTAAGCTATCAAATATATTGAAATTACAATTGCCTAGAATTTATCGTTATTTTTAAGACATTCATCATCATTCCCTAAACATTTCATAATACATGCTGAGAAGCAAACAAGGCTTTGATAAGTATGCCTGTAGGTTATTTTTTGGGGAGGGGGTAGTGAGTACTTAAGTTGAAATAGCCCAAGCTAAGCAGGACGTCATTTCAGGAAACAAATAGAAGCAACATCAATTATAAGGATAGAGGGAAGGCATGCGGGGGCACTATAAAAGTTCCATACAACAGGGAGAGTGCTCCTGACCAGCCAAAAAATTAGGATTGCAATTTCAATCTCCGATTTTAGTTGGAGCCAACTGTCACTCTGTCGAAGAGGAACTTGATCTTTGATTTGATGGTCATAGTAATGAGTGGCAGAGCAGTCATGTTTTCATAGATTGACAGCATTTATATTCCTTTCTTGGTTGAGAATCTTTTATGTCCAATAAAAAACTTCAGATCTACTATTTGATCTCAAGCACAACATTACATTTACTAGTTTTATGTCCTCTTCTAGTAACTAGCTGGGTGGTTTGGAATTTCCTTAGCTTTAAGATGATTTTTGGATCATTGCATCATTATTATTCATATAAAATCAAAAATCATGAAGTCTGTGTTTCTGCTACTTAGTTACACTTCTCTGTCTTCTATTTTCCACCTTATGGAATAAATAAATTTATATGTGTGCATACGTGCATCCTTTTATACAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTTTGATTTGAATTTCTTTCATTATTTCTTTTTGTGCAGTGTATACTCTCAAATGCACAACTCTTGAAAACAAAATTGTATTTTATATATAAAAAAATAAAGAAATATAGGAAATTGCAACTATTCCACTTGAAAATTATTCCTCCAAAATTGTAGAAAAAAATGGTATATGTTCGCTTGGCAATTAATATTAATTTCTCAAACCGTGGGTGAATTACAGTTGTTCTCCATACTGAATGTTAAGTCATCTACAAAGGGTGAATATTCTTTCTTCCTAGGCTTTAGGATGCCTGATGTACTTGTCATTTGTCAAGTTGTCAATTGTCATACCTTGCTAATAAGACTTTAGTGACTGCTATCTTTGGTTATCAATAAAGGCTGTAAATGAATTTCAGAATAGCCACTGAGCTGGTCATGTCTTGTGGCTATCAGACTTTCGGTTATAGTTTTTAACACTTCAACAGTCAAACATAGTTTTGATCTTGATTTGCAACTTGATTGTGCACATTTTCAAGTCTTCCAGTCTTTTTGGATAAAGTTTTGATTTTACGATTACCTTTGTTTATACAAGTCTATATTCTTCCGTCTATTCACTATTATATCCTTCAAGGCATAATGGCATATTAAGGACAGGTGAATGTGTTTGGAGTTAGAACAATTTAATCTTAAGGTTCACCTATTCTTGGAGTCACGTCAGGGGACATTATGGAAAAGATAATTTGGCTTGCTCTCTCTCACTGCCATGTGCCTGAAAAAATTGCATATTGACAGTACTATTCTCTTGCTACAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTGAGTGGTATAACTTGGCTTCGACTTGTGTTTTTCCTTTAATTTTTGTTAACCATTTATTTTCCTTTACTGCACAATTATAGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>MS.gene033008.t1

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK