AlfalfaGEDB | MS.gene044507

M. sativa cultivar XinJiangDaYe / MS.gene044507

KEGG: -
GO: -
PFAM: PF11833.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044507.t1	XP_003609152.1	98	251	5	0	1	251	1	251	1.40E-132	482.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044507.t1	Q9FN50	69.1	256	73	3	2	251	3	258	8.5e-94	344.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044507.t1	G7JT27	98.0	251	5	0	1	251	1	251	1.0e-132	482.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012085	MS.gene044507	PPI
MS.gene017661	MS.gene044507	PPI
MS.gene76469	MS.gene044507	PPI
MS.gene89638	MS.gene044507	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044507.t1	MTR_4g112540	98.008	251	5	0	1	251	1	251	0.0	496
MS.gene044507.t1	MTR_8g076220	38.393	224	129	5	33	250	61	281	4.92e-45	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044507.t1	AT5G23040	76.233	223	50	2	32	251	36	258	6.62e-124	353
MS.gene044507.t1	AT5G23040	76.233	223	50	2	32	251	36	258	6.62e-124	353
MS.gene044507.t1	AT3G51140	33.473	239	145	4	17	251	50	278	5.17e-42	145
MS.gene044507.t1	AT3G51140	40.523	153	81	3	54	202	83	229	2.98e-34	123
MS.gene044507.t1	AT2G20920	27.500	200	123	5	38	216	52	250	2.45e-11	62.8

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Find 67 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAAAGACAAAGAGTT+TGG	0.389051	8.1:+15214210	MS.gene044507:CDS
AACAGTATGCTGGACATGAG+AGG	0.646098	8.1:+15213113	MS.gene044507:CDS
AAGAGTTCAAGGCTCCAAGT+TGG	0.565418	8.1:-15214408	None:intergenic
AAGCATCATGGCTAACACCA+AGG	0.688521	8.1:-15213051	None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG	0.688946	8.1:+15213236	MS.gene044507:CDS
AATGCTCCAGCCACCCATGA+AGG	0.539964	8.1:-15213329	None:intergenic
AATTCCCCAGAGTTAGTGTT+TGG	0.356525	8.1:+15213014	MS.gene044507:CDS
ACACTAACTCTGGGGAATTT+TGG	0.086811	8.1:-15213010	None:intergenic
ACTTAGTACGAAACGAAACT+TGG	0.478032	8.1:-15210675	None:intergenic
AGAGTTCAAGGCTCCAAGTT+GGG	0.476403	8.1:-15214407	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGTATATGTTCGCT+TGG	+	chr8.1:15213543-15213562	MS.gene044507:intron	30.0%
AAAAGATTCTCAACCAAGAA+AGG	-	chr8.1:15212710-15212729	None:intergenic	30.0%
AACCTATAATTGTGCAGTAA+AGG	-	chr8.1:15214318-15214337	None:intergenic	30.0%
ACAAAATGTCTTATCCCATT+AGG	+	chr8.1:15211699-15211718	MS.gene044507:intron	30.0%
AGATGACTTAACATTCAGTA+TGG	-	chr8.1:15213615-15213634	None:intergenic	30.0%
AGCAACATTGTTGGAATATT+GGG	-	chr8.1:15214384-15214403	None:intergenic	30.0%
ATATTATACGCCAAAGGTTA+AGG	-	chr8.1:15212211-15212230	None:intergenic	30.0%
ATCAGAAACATGAGAATAAG+AGG	+	chr8.1:15211467-15211486	MS.gene044507:intron	30.0%
ATTAATTGTGTTAACCGAGA+AGG	+	chr8.1:15211541-15211560	MS.gene044507:intron	30.0%
ATTATGAATTCTGCTGAAAC+TGG	+	chr8.1:15213349-15213368	MS.gene044507:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	15210471	15214485	15210471	ID=MS.gene044507
chr8.1	mRNA	15210471	15214485	15210471	ID=MS.gene044507.t1;Parent=MS.gene044507
chr8.1	exon	15210471	15210529	15210471	ID=MS.gene044507.t1.exon1;Parent=MS.gene044507.t1
chr8.1	CDS	15210471	15210529	15210471	ID=cds.MS.gene044507.t1;Parent=MS.gene044507.t1
chr8.1	exon	15210636	15210721	15210636	ID=MS.gene044507.t1.exon2;Parent=MS.gene044507.t1
chr8.1	CDS	15210636	15210721	15210636	ID=cds.MS.gene044507.t1;Parent=MS.gene044507.t1
chr8.1	exon	15213002	15213384	15213002	ID=MS.gene044507.t1.exon3;Parent=MS.gene044507.t1
chr8.1	CDS	15213002	15213384	15213002	ID=cds.MS.gene044507.t1;Parent=MS.gene044507.t1
chr8.1	exon	15214175	15214251	15214175	ID=MS.gene044507.t1.exon4;Parent=MS.gene044507.t1
chr8.1	CDS	15214175	15214251	15214175	ID=cds.MS.gene044507.t1;Parent=MS.gene044507.t1
chr8.1	exon	15214335	15214485	15214335	ID=MS.gene044507.t1.exon5;Parent=MS.gene044507.t1
chr8.1	CDS	15214335	15214485	15214335	ID=cds.MS.gene044507.t1;Parent=MS.gene044507.t1

Gene Sequence

>MS.gene044507

ATGGCTTCTCTTTCACTTTCATCTCCCAATTTCGCCACCGCTTTCCTCTCCAAAAAACTGTACTCCTTCTTCCTTAATTCATTTATTCGCTTCAATTTTCAGTTTAATCACTGATTCAACTTCCATATTAATTAATTAATTAATTAATGCTTTTGGATTCTGCAGGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTATAATCATTAAAATACTAGTAACATGAACAATTTCATTATATTGATCATATCATATGTATCCACATATTCACCTATCTATATTATTTAGTTTTGGGGAAATTACATTCACCTCCCCTGAGGTTATTCTAAATGTATCCAACACCCCCTCTATTTTCTTAATTAGCACTAACCTCCCTTGCCCTTGACACCGTTAAACTTCTGTCAAATTAATTTCCTGAAACATATAACACCGCCTAATTCTGAATTTTGTCATTGCCTTTTCATTTCCTCCATTCAATGAGCGGCCACATTTTCCATTTGGGTCGTTTGCTTGGGTTGATCTTGCAACATCTCTTTTGTTCTAGTTGGCTGGATTATTTTTCATTCTCCAAGTGAGACCGTTCGTCAATGGTTTTGAAGAAGAGGAAAACCTTGAAGTATTTTTTGGGAATCAATTGTTGGGGATATTCTAATTTTTCAACTTTTGGGATATGATTTATCTGCCAAATGTCATCGCCAAGTTGGAATCGCCGATTTTGATCATATTTGGGTTTGTTTTTGTTCATTGGTAGCGCCTTTGGATTCTATTTTATATGAAAAATTGTTATTGCCAATTTCAATTCCCAATTCATTTTCGTATTTACAAAGACATTGTATGCTACAAAACAAAAGAGATTTCACATTTCATACAGAAAGAACAAAGACCTTGTTGGCATAAATGCTCAAAAGGATAAAAGTATTCATTTTTTTATGCAGTATGTGTATCAGAAACATGAGAATAAGAGGTTTGTTTATTGAGAAGGATAAAGTAGCAGTTTAGTTTTAACAAACGGAGTAATTAATTGTGTTAACCGAGAAGGGATTTGTTTATCTATTTTAAGAGACCTTAAGGGAGGTTATTGTCTATTATAAAACTAGAGGGGGTGTTTGTGTTATTTAAAGAGATCTCAGGGGAGGTCACTATAATTTACCCTTTAGTTTTCACAACAATAATAACAAAATGTCTTATCCCATTAGGTTTTATTCCGTTGAATCGTGGAAGTGTATCTAAAACATTGAATTTTGTTTAAAATGCACCGGCTTTTAGTTTTGCACTTGTTGTAAGCAAATAGTAAGGGTTTGTTTGGGAATTTAGGAGGGGAGGGTTTAAAAACTAGGGAAGGAGGAAGCTGAAGGAATATGGAAGCACTAGTTGATTAGCTATTGATGTACTAGAGCCAAGCACAGGTTGTTGAGCTAGTGCTGTTAGATAGTGGTCATCGTGGATTTGTGTCAGCCGCCATAGCAATTTGTGAAGCGCCATCTACCATTGCGGCACTATAGGTTGCAATCCCGCATTTATATGTGGAATTTTAGCCAATCCACCATAAACTGCCAGACACCACTGCAACATCAGTTCAAGCTGGATTTTCTAGTTCATATGCTCAAGCTTCTGAATTTTTTACTTATGTCAAGATTCCTTGCTCCCACCCTCCTTTTCCACCTTCAGGATGTAGCAATGATCCCTTAACCTTTGGCGTATAATATAGATTAGTGGACAGTTCTATTTTCAATGTTTAAGCTATCAAATATATTGAAATTACAATTGCCTAGAATTTATCGTTATTTTTAAGACATTCATCATCATTCCCTAAACATTTCATAATACATGCTGAGAAGCAAACAAGGCTTTGATAAGTATGCCTGTAGGTTATTTTTTGGGGAGGGGGTAGTGAGTACTTAAGTTGAAATAGCCCAAGCTAAGCAGGACGTCATTTCAGGAAACAAATAGAAGCAACATCAATTATAAGGATAGAGGGAAGGCATGCGGGGGCACTATAAAAGTTCCATACAACAGGGAGAGTGCTCCTGACCAGCCAAAAAATTAGGATTGCAATTTCAATCTCCGATTTTAGTTGGAGCCAACTGTCACTCTGTCGAAGAGGAACTTGATCTTTGATTTGATGGTCATAGTAATGAGTGGCAGAGCAGTCATGTTTTCATAGATTGACAGCATTTATATTCCTTTCTTGGTTGAGAATCTTTTATGTCCAATAAAAAACTTCAGATCTACTATTTGATCTCAAGCACAACATTACATTTACTAGTTTTATGTCCTCTTCTGGTAACTAGCTGGGTGGTTTGGAATTTCCTTAGCTTTAAGATGATTTTTGGATCATTGCATCATTATTATTCATATAAAATCAAAAATCATGAAGTCTGTGTTTCTGCTACTTAGTTACACTTCTCTGTCTTCTATTTTCCACCTTATGGAATAAATAAATTTATATGTGTGCATACGTGCATCCTTTTATACAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTTTGATTTGAATTTCTTTCATTATTTCTTTTTGTGCAGTGTATACTCTCAAATGCACAACTCTTGAAAACAAAATTGTATTTTATATATAAAAAAATAAAGAAATATAGGAAATTGCAACTATTCCACTTGAAAATTATTCCTCCAAAATTGTAGAAAAAAATGGTATATGTTCGCTTGGCAATTAATATTAATTTCTCAAACCGTGGGTGAATTACAGTTGTTCTCCATACTGAATGTTAAGTCATCTACAAAGGGTGAATATTCTTTCTTCCTAGGCTTTAGGATGCCTGATGTACTTGTCATTTGTCAAGTTGTCAATTGTCATACCTTGCTAATAAGACTTTAGTGACTGCTATCTTTGGTTATCAATAAAGGCTGTAAATGAATTTCAGAATAGCCACTGAGCTGGTCATGTCTTGTGGCTATCAGACTTTCGGTTATAGTTTTTAACACTTCAACAGTCAAACATAGTTTTGATCTTGATTTGCAACTTGATTGTGCACATTTTCAAGTCTTCCAGTCTTTTTGGATAAAGTTTTGATTTTACGATTACCTTTGTTTATACAAGTCTATATTCTTCCGTCTATTCACTATTATATCCTTCAAGGCATAATGGCATATTAAGGACAGGTGAATGTGTTTGGAGTTAGAACAATTTAATCTTAAGGTTCACCTATTCTTGGAGTCACGTCAGGGGACATTATTGAAAAGATAATTTGGCTTGCTCTCTCTCACTGCCATGTGCCTGAAAAAATTGCATATTGACAGTACTATTCTCTTGCTACAGGTGGCAATCTCTTTGGCTGCTTGCATATACTTCCTAAATGAAAAGACAAAGAGTTTGGCTAGAGCGTTCGTTATTGGGTGAGTGGTATAACTTGGCTTCGACTTGTGTTTTTCCTTTAATTTTTGTTAACCATTTATTTTCCTTTACTGCACAATTATAGGTTTGGAGCTCTTGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCCAATATTCCAACAATGTTGCTGCGCCCAACTTGGAGCCTTGAACTCTTAACATCGTTGGTAGTTTACTTTTTCTTGTTCATTGGTTGTACCTTTTTCAAGTGA

Protein sequence

>MS.gene044507.t1

MASLSLSSPNFATAFLSKKLPLRENTRNPTTFRQVSFRTKCAVDTPYGGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFVIGFGALVAGWVSGSLLVPNIPTMLLRPTWSLELLTSLVVYFFLFIGCTFFK