Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012485.t1 | XP_013458571.1 | 98.7 | 479 | 6 | 0 | 1 | 479 | 22 | 500 | 8.90E-277 | 962.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012485.t1 | Q3V384 | 40.1 | 414 | 214 | 10 | 64 | 459 | 74 | 471 | 8.6e-71 | 269.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012485.t1 | A0A072USG5 | 98.7 | 479 | 6 | 0 | 1 | 479 | 22 | 500 | 6.4e-277 | 962.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57967 | MS.gene012485 | PPI |
| MS.gene012485 | MS.gene035633 | PPI |
| MS.gene012485 | MS.gene012487 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012485.t1 | MTR_4g129950 | 98.747 | 479 | 6 | 0 | 1 | 479 | 22 | 500 | 0.0 | 985 |
| MS.gene012485.t1 | MTR_4g129950 | 97.500 | 360 | 9 | 0 | 1 | 360 | 22 | 381 | 0.0 | 739 |
| MS.gene012485.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 129 | 407 | 83 | 417 | 8.83e-46 | 167 |
| MS.gene012485.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 129 | 407 | 60 | 394 | 1.06e-45 | 166 |
| MS.gene012485.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 129 | 407 | 184 | 518 | 3.19e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012485.t1 | AT4G30490 | 72.685 | 432 | 107 | 3 | 46 | 466 | 63 | 494 | 0.0 | 663 |
| MS.gene012485.t1 | AT4G28070 | 73.923 | 418 | 105 | 2 | 56 | 469 | 53 | 470 | 0.0 | 649 |
| MS.gene012485.t1 | AT4G28070 | 71.770 | 418 | 105 | 3 | 56 | 469 | 53 | 461 | 0.0 | 622 |
| MS.gene012485.t1 | AT2G25530 | 30.732 | 410 | 209 | 12 | 127 | 461 | 233 | 642 | 6.49e-46 | 169 |
| MS.gene012485.t1 | AT2G25530 | 31.229 | 301 | 151 | 9 | 127 | 371 | 233 | 533 | 8.17e-38 | 145 |
Find 89 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 8.2:-4304225 | MS.gene012485:CDS |
| CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8.2:-4302642 | MS.gene012485:CDS |
| CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8.2:+4302846 | None:intergenic |
| CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 8.2:-4304240 | MS.gene012485:CDS |
| CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8.2:+4302845 | None:intergenic |
| CCACCCTCATATAGATTATC+TGG | 0.285514 | 8.2:+4303244 | None:intergenic |
| AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8.2:+4302677 | None:intergenic |
| TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8.2:-4302369 | MS.gene012485:CDS |
| ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8.2:-4303557 | MS.gene012485:intron |
| TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8.2:+4301866 | None:intergenic |
| AAATATCCTACATACCTTAC+AGG | 0.341666 | 8.2:+4304404 | None:intergenic |
| TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8.2:-4303958 | MS.gene012485:intron |
| GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8.2:-4302938 | MS.gene012485:CDS |
| TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8.2:+4303888 | None:intergenic |
| AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 8.2:+4301475 | None:intergenic |
| TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 8.2:-4304281 | MS.gene012485:intron |
| TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8.2:-4302919 | MS.gene012485:CDS |
| AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 8.2:-4304717 | MS.gene012485:CDS |
| CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 8.2:+4304927 | None:intergenic |
| TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8.2:-4302313 | MS.gene012485:CDS |
| CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8.2:-4302705 | MS.gene012485:CDS |
| ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8.2:-4303200 | MS.gene012485:intron |
| GATCAACAGCAGAGAATACT+TGG | 0.418394 | 8.2:-4301544 | MS.gene012485:CDS |
| GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 8.2:-4303604 | MS.gene012485:CDS |
| CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8.2:-4301825 | MS.gene012485:CDS |
| ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8.2:+4301950 | None:intergenic |
| TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8.2:-4302714 | MS.gene012485:intron |
| TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8.2:+4303198 | None:intergenic |
| CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8.2:-4301797 | MS.gene012485:intron |
| GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8.2:-4302934 | MS.gene012485:CDS |
| GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8.2:-4302660 | MS.gene012485:CDS |
| ATATATATCATACCTACTAA+TGG | 0.455546 | 8.2:+4301785 | None:intergenic |
| TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8.2:-4303248 | MS.gene012485:CDS |
| CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8.2:-4302844 | MS.gene012485:CDS |
| CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8.2:-4302845 | MS.gene012485:CDS |
| TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8.2:+4304429 | None:intergenic |
| TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8.2:+4302932 | None:intergenic |
| CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8.2:-4303617 | MS.gene012485:CDS |
| GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 8.2:-4304710 | MS.gene012485:CDS |
| CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8.2:+4301867 | None:intergenic |
| TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8.2:+4302669 | None:intergenic |
| GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8.2:+4301887 | None:intergenic |
| CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8.2:+4302700 | None:intergenic |
| TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 8.2:-4304216 | MS.gene012485:CDS |
| AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8.2:-4301948 | MS.gene012485:CDS |
| TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 8.2:-4302949 | MS.gene012485:intron |
| GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 8.2:-4304696 | MS.gene012485:intron |
| AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8.2:-4303086 | MS.gene012485:CDS |
| GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8.2:-4304444 | MS.gene012485:CDS |
| ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8.2:+4302853 | None:intergenic |
| TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 8.2:-4304725 | MS.gene012485:CDS |
| TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8.2:-4302880 | MS.gene012485:CDS |
| ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8.2:+4302847 | None:intergenic |
| GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8.2:+4304439 | None:intergenic |
| GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 8.2:-4304891 | MS.gene012485:CDS |
| ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8.2:-4302310 | MS.gene012485:CDS |
| AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8.2:-4301892 | MS.gene012485:CDS |
| AATTTACCATGAATTCATCA+AGG | 0.550011 | 8.2:+4303551 | None:intergenic |
| ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8.2:+4303261 | None:intergenic |
| ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8.2:+4303199 | None:intergenic |
| CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 8.2:-4304193 | MS.gene012485:CDS |
| AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 8.2:-4304222 | MS.gene012485:CDS |
| GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 8.2:-4304761 | MS.gene012485:intron |
| TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 8.2:+4304917 | None:intergenic |
| TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8.2:-4303408 | MS.gene012485:CDS |
| CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 8.2:-4304210 | MS.gene012485:CDS |
| TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8.2:-4301824 | MS.gene012485:CDS |
| AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 8.2:-4301508 | MS.gene012485:CDS |
| CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 8.2:+4304737 | None:intergenic |
| CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8.2:-4302857 | MS.gene012485:CDS |
| ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 8.2:+4304911 | None:intergenic |
| ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8.2:-4303233 | MS.gene012485:CDS |
| GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8.2:-4302326 | MS.gene012485:CDS |
| GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8.2:+4303434 | None:intergenic |
| TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8.2:-4303635 | MS.gene012485:intron |
| CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8.2:+4303611 | None:intergenic |
| TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8.2:-4303054 | MS.gene012485:intron |
| TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 8.2:+4303601 | None:intergenic |
| GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8.2:-4303247 | MS.gene012485:CDS |
| AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8.2:+4302645 | None:intergenic |
| CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8.2:-4303244 | MS.gene012485:CDS |
| GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8.2:+4302699 | None:intergenic |
| CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8.2:-4301893 | MS.gene012485:CDS |
| TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8.2:-4303234 | MS.gene012485:CDS |
| TATCATACCTACTAATGGTG+CGG | 0.657100 | 8.2:+4301790 | None:intergenic |
| AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8.2:-4301884 | MS.gene012485:CDS |
| GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8.2:-4303634 | MS.gene012485:intron |
| TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 8.2:+4304931 | None:intergenic |
| GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 8.2:-4304888 | MS.gene012485:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTAATGTTCCAAAA+TGG | + | chr8.2:4303970-4303989 | None:intergenic | 15.0% |
| !!! | AAAAATTGTACAATTAGTTT+TGG | - | chr8.2:4304771-4304790 | MS.gene012485:intron | 15.0% |
| !!! | ATCTTTAAAATTAGAATTTC+AGG | + | chr8.2:4304420-4304439 | None:intergenic | 15.0% |
| !!! | CTTTGAACATTAATTAATTT+TGG | - | chr8.2:4302783-4302802 | MS.gene012485:intron | 15.0% |
| !!! | GCTTTAAATATTTTTATAGT+TGG | - | chr8.2:4303352-4303371 | MS.gene012485:intron | 15.0% |
| !!! | TATTTGTTTTTATGCTAATT+TGG | - | chr8.2:4303559-4303578 | MS.gene012485:CDS | 15.0% |
| !!! | TGGTTTTTATTCATAAAATA+GGG | - | chr8.2:4304873-4304892 | MS.gene012485:intron | 15.0% |
| !!! | TTGGTTTTTATTCATAAAAT+AGG | - | chr8.2:4304872-4304891 | MS.gene012485:intron | 15.0% |
| !! | AAAAAAAGGATACATCTAAA+AGG | + | chr8.2:4302676-4302695 | None:intergenic | 20.0% |
| !! | ACAAAATTAAGAAATCAAGA+CGG | + | chr8.2:4302400-4302419 | None:intergenic | 20.0% |
| !! | ATATATATCATACCTACTAA+TGG | + | chr8.2:4304744-4304763 | None:intergenic | 20.0% |
| !! | ATGAATAAAAACCAAACAAT+GGG | + | chr8.2:4304867-4304886 | None:intergenic | 20.0% |
| !! | CCAAAAGAATACATAATTAT+TGG | + | chr8.2:4302728-4302747 | None:intergenic | 20.0% |
| !! | GTAAAAGGTTTATATCTTTA+TGG | - | chr8.2:4302301-4302320 | MS.gene012485:intron | 20.0% |
| !! | TATGAATAAAAACCAAACAA+TGG | + | chr8.2:4304868-4304887 | None:intergenic | 20.0% |
| !! | TATGTAAACTTACTTGTAAT+AGG | + | chr8.2:4302641-4302660 | None:intergenic | 20.0% |
| !! | TTCTTTCATTGTGATAATTT+CGG | - | chr8.2:4304027-4304046 | MS.gene012485:intron | 20.0% |
| !!! | AATATTTTTATAGTTGGAAG+TGG | - | chr8.2:4303358-4303377 | MS.gene012485:intron | 20.0% |
| !!! | ATGGCATTAATTTTATATAG+AGG | + | chr8.2:4304517-4304536 | None:intergenic | 20.0% |
| !!! | CCAATAATTATGTATTCTTT+TGG | - | chr8.2:4302725-4302744 | MS.gene012485:intron | 20.0% |
| !!! | TAAAGATATAAACCTTTTAC+AGG | + | chr8.2:4302301-4302320 | None:intergenic | 20.0% |
| !!! | TATTAAAATATGAAGTGCTT+GGG | + | chr8.2:4304313-4304332 | None:intergenic | 20.0% |
| !!! | TGGCATTAATTTTATATAGA+GGG | + | chr8.2:4304516-4304535 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCTGATTTGTAT+TGG | - | chr8.2:4301728-4301747 | MS.gene012485:intron | 20.0% |
| ! | AAAAATAGTAACAATATCCG+AGG | - | chr8.2:4304622-4304641 | MS.gene012485:intron | 25.0% |
| ! | AAAGGTTTATATCTTTATGG+AGG | - | chr8.2:4302304-4302323 | MS.gene012485:intron | 25.0% |
| ! | AATTTACCATGAATTCATCA+AGG | + | chr8.2:4302978-4302997 | None:intergenic | 25.0% |
| ! | AGAAGACAAAGTTTAAATGT+GGG | + | chr8.2:4304266-4304285 | None:intergenic | 25.0% |
| ! | AGATAATGATTTCATTGTTG+TGG | - | chr8.2:4303994-4304013 | MS.gene012485:intron | 25.0% |
| ! | GGAAATCTGTAAAATTATGA+AGG | + | chr8.2:4304076-4304095 | None:intergenic | 25.0% |
| ! | TGAATAAAAACCAAACAATG+GGG | + | chr8.2:4304866-4304885 | None:intergenic | 25.0% |
| ! | TGATCAGTAATCATTAATCA+TGG | + | chr8.2:4304934-4304953 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTTGAACTTTA+TGG | - | chr8.2:4302168-4302187 | MS.gene012485:intron | 25.0% |
| ! | TTATTACTAAGCCCAAAAAT+CGG | + | chr8.2:4304187-4304206 | None:intergenic | 25.0% |
| ! | TTTATGATCAATTGTGAGTT+TGG | - | chr8.2:4302362-4302381 | MS.gene012485:CDS | 25.0% |
| ! | TTTATGGATCTCTCATATAA+TGG | + | chr8.2:4304097-4304116 | None:intergenic | 25.0% |
| !! | CTATTAAAATATGAAGTGCT+TGG | + | chr8.2:4304314-4304333 | None:intergenic | 25.0% |
| !! | TGAAATTATTTTCCCTACTT+TGG | - | chr8.2:4301889-4301908 | MS.gene012485:CDS | 25.0% |
| !! | TTTTGTATTACATGCTATTG+AGG | - | chr8.2:4302414-4302433 | MS.gene012485:intron | 25.0% |
| !!! | ATTTTTTGAAAGAGATCAAG+AGG | + | chr8.2:4304608-4304627 | None:intergenic | 25.0% |
| !!! | CATTGTGTAACATTGATTTA+TGG | + | chr8.2:4304113-4304132 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTTTACAGACA+CGG | - | chr8.2:4302235-4302254 | MS.gene012485:intron | 25.0% |
| !!! | CTTTTTTTTTTTACAGACAC+GGG | - | chr8.2:4302236-4302255 | MS.gene012485:intron | 25.0% |
| !!! | TTTTTTGAAAGAGATCAAGA+GGG | + | chr8.2:4304607-4304626 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTTCTTTTGTTG+AGG | - | chr8.2:4302009-4302028 | MS.gene012485:intron | 25.0% |
| AAAAAGTTTCAGCAGTTGAT+TGG | - | chr8.2:4303640-4303659 | MS.gene012485:intron | 30.0% | |
| AAATATCCTACATACCTTAC+AGG | + | chr8.2:4302125-4302144 | None:intergenic | 30.0% | |
| AAGAATTGCTAATGGTGAAT+TGG | - | chr8.2:4301809-4301828 | MS.gene012485:CDS | 30.0% | |
| AAGCTCTTCAAAAGGAAAAT+AGG | + | chr8.2:4303852-4303871 | None:intergenic | 30.0% | |
| AAGCTTATTCCACTTCAATA+AGG | - | chr8.2:4304454-4304473 | MS.gene012485:CDS | 30.0% | |
| ACATAATCTCATTCATAGCT+AGG | + | chr8.2:4304357-4304376 | None:intergenic | 30.0% | |
| ATTATGCCTTGATGAATTCA+TGG | - | chr8.2:4302969-4302988 | MS.gene012485:intron | 30.0% | |
| CAAGTAGGGAATAGAAAAAA+AGG | + | chr8.2:4302690-4302709 | None:intergenic | 30.0% | |
| CATAAAATCCTGTTGTATAG+AGG | + | chr8.2:4303174-4303193 | None:intergenic | 30.0% | |
| CCGTGTCTGTAAAAAAAAAA+AGG | + | chr8.2:4302238-4302257 | None:intergenic | 30.0% | |
| CTTCATTTCTTCAATGTGTT+TGG | - | chr8.2:4303220-4303239 | MS.gene012485:CDS | 30.0% | |
| GAGAAGACAAAGTTTAAATG+TGG | + | chr8.2:4304267-4304286 | None:intergenic | 30.0% | |
| TAATTGACAAACAGAGTATG+AGG | - | chr8.2:4302843-4302862 | MS.gene012485:CDS | 30.0% | |
| TACATCAGTATACACATACT+AGG | + | chr8.2:4303416-4303435 | None:intergenic | 30.0% | |
| TAGTATGTGTATACTGATGT+AGG | - | chr8.2:4303415-4303434 | MS.gene012485:CDS | 30.0% | |
| TATGAACGAAGAATTGCTAA+TGG | - | chr8.2:4301801-4301820 | MS.gene012485:CDS | 30.0% | |
| TATTACTAAGCCCAAAAATC+GGG | + | chr8.2:4304186-4304205 | None:intergenic | 30.0% | |
| TCATAAAATAGGGCGAAAAA+TGG | - | chr8.2:4304883-4304902 | MS.gene012485:intron | 30.0% | |
| TGTTACAAACAAACAAAGCA+TGG | + | chr8.2:4304536-4304555 | None:intergenic | 30.0% | |
| TTATATCTTTATGGAGGAGT+AGG | - | chr8.2:4302310-4302329 | MS.gene012485:CDS | 30.0% | |
| TTATGCTAATTTGGACTGTA+GGG | - | chr8.2:4303568-4303587 | MS.gene012485:CDS | 30.0% | |
| TTTAACCTCATAAGAACACA+TGG | + | chr8.2:4302508-4302527 | None:intergenic | 30.0% | |
| TTTATGCTAATTTGGACTGT+AGG | - | chr8.2:4303567-4303586 | MS.gene012485:CDS | 30.0% | |
| TTTCATACTTTAGCACTTGA+TGG | - | chr8.2:4304157-4304176 | MS.gene012485:intron | 30.0% | |
| ! | CAACACTTTTCAAAGTAACA+AGG | + | chr8.2:4301515-4301534 | None:intergenic | 30.0% |
| ! | CTCTATACAACAGGATTTTA+TGG | - | chr8.2:4303172-4303191 | MS.gene012485:intron | 30.0% |
| ! | CTCTTTTTCTTCCAATTTGA+GGG | + | chr8.2:4302582-4302601 | None:intergenic | 30.0% |
| ! | TGGATGTAAGTCCTTTTAAA+TGG | - | chr8.2:4304236-4304255 | MS.gene012485:CDS | 30.0% |
| ! | TTTGTGTTGACAATGAACTA+GGG | - | chr8.2:4304702-4304721 | MS.gene012485:CDS | 30.0% |
| !! | ATGCTTTGTTTGTTTGTAAC+AGG | - | chr8.2:4304535-4304554 | MS.gene012485:intron | 30.0% |
| !! | TTTTCCCTACTTTGGTTTAT+CGG | - | chr8.2:4301897-4301916 | MS.gene012485:CDS | 30.0% |
| !!! | ATTTTCAAGTCTCAGTGTAA+GGG | - | chr8.2:4302450-4302469 | MS.gene012485:intron | 30.0% |
| AATATCCGAGGCTAAACAAA+GGG | - | chr8.2:4304634-4304653 | MS.gene012485:intron | 35.0% | |
| AATCAAGCATACAATAGAGC+TGG | + | chr8.2:4302544-4302563 | None:intergenic | 35.0% | |
| AATTCTTCCCTAAGTCAAGT+AGG | + | chr8.2:4302705-4302724 | None:intergenic | 35.0% | |
| ACCTTCAATGTTGCAATGAA+GGG | + | chr8.2:4303330-4303349 | None:intergenic | 35.0% | |
| AGAGGGTAACTAAAATGCAT+AGG | + | chr8.2:4304499-4304518 | None:intergenic | 35.0% | |
| AGATCATGAACAAACTCTAG+AGG | - | chr8.2:4304811-4304830 | MS.gene012485:intron | 35.0% | |
| AGATTATTGTGTTCAGCTGA+TGG | - | chr8.2:4304578-4304597 | MS.gene012485:intron | 35.0% | |
| AGCAGAAAAGAAAGAAAGAG+AGG | - | chr8.2:4305018-4305037 | MS.gene012485:CDS | 35.0% | |
| ATCAGCTGAACACAATAATC+TGG | + | chr8.2:4304579-4304598 | None:intergenic | 35.0% | |
| ATCATGCATGCATTTGTTCA+TGG | - | chr8.2:4301944-4301963 | MS.gene012485:CDS | 35.0% | |
| ATGTAAATTGCCCCATTGTT+TGG | - | chr8.2:4304853-4304872 | MS.gene012485:intron | 35.0% | |
| ATGTGGGCAAACCATTTAAA+AGG | + | chr8.2:4304250-4304269 | None:intergenic | 35.0% | |
| ATTACTACTTCCACTTCTTG+GGG | + | chr8.2:4303682-4303701 | None:intergenic | 35.0% | |
| ATTCTTCCCTAAGTCAAGTA+GGG | + | chr8.2:4302704-4302723 | None:intergenic | 35.0% | |
| ATTTGAACAGACATATCAGC+AGG | + | chr8.2:4302157-4302176 | None:intergenic | 35.0% | |
| CAAGAAGTGGAAGTAGTAAT+GGG | - | chr8.2:4303682-4303701 | MS.gene012485:intron | 35.0% | |
| CATTACTACTTCCACTTCTT+GGG | + | chr8.2:4303683-4303702 | None:intergenic | 35.0% | |
| CCTCAAATTGGAAGAAAAAG+AGG | - | chr8.2:4302580-4302599 | MS.gene012485:intron | 35.0% | |
| CTTGTGGATGTGGTAATAAA+TGG | + | chr8.2:4301602-4301621 | None:intergenic | 35.0% | |
| GAAAAACCTGTAAGGTATGT+AGG | - | chr8.2:4302116-4302135 | MS.gene012485:intron | 35.0% | |
| GAGATCGAGAAAAAATGATG+AGG | - | chr8.2:4304673-4304692 | MS.gene012485:intron | 35.0% | |
| GCGATTAAGTATCAATGCAT+CGG | + | chr8.2:4303095-4303114 | None:intergenic | 35.0% | |
| GCTCCAGATAATCTATATGA+GGG | - | chr8.2:4303279-4303298 | MS.gene012485:intron | 35.0% | |
| GTTACAGTAACTAACAGAAG+TGG | - | chr8.2:4301765-4301784 | MS.gene012485:intron | 35.0% | |
| TACCTTCAATGTTGCAATGA+AGG | + | chr8.2:4303331-4303350 | None:intergenic | 35.0% | |
| TATCATACCTACTAATGGTG+CGG | + | chr8.2:4304739-4304758 | None:intergenic | 35.0% | |
| TCTATTCCCTACTTGACTTA+GGG | - | chr8.2:4302695-4302714 | MS.gene012485:CDS | 35.0% | |
| TGCTCCAGATAATCTATATG+AGG | - | chr8.2:4303278-4303297 | MS.gene012485:intron | 35.0% | |
| TGGATGTGGTAATAAATGGA+CGG | + | chr8.2:4301598-4301617 | None:intergenic | 35.0% | |
| TTATGCCATGTGTTCTTATG+AGG | - | chr8.2:4302500-4302519 | MS.gene012485:intron | 35.0% | |
| TTCAGACATCTATTCAGCAA+AGG | - | chr8.2:4303118-4303137 | MS.gene012485:intron | 35.0% | |
| TTCTATTCCCTACTTGACTT+AGG | - | chr8.2:4302694-4302713 | MS.gene012485:CDS | 35.0% | |
| TTGTCACAAAGCTCTTCAAA+AGG | + | chr8.2:4303860-4303879 | None:intergenic | 35.0% | |
| TTTCAGAATTGCGATCCAAT+TGG | + | chr8.2:4302100-4302119 | None:intergenic | 35.0% | |
| TTTCCCGATAAACCAAAGTA+GGG | + | chr8.2:4301904-4301923 | None:intergenic | 35.0% | |
| ! | AGTGTAAGGGGAATATTTTG+AGG | - | chr8.2:4302463-4302482 | MS.gene012485:intron | 35.0% |
| ! | CACTTCAATAAGGCATCATT+GGG | - | chr8.2:4304464-4304483 | MS.gene012485:CDS | 35.0% |
| ! | CCTCTTTTTCTTCCAATTTG+AGG | + | chr8.2:4302583-4302602 | None:intergenic | 35.0% |
| ! | CTTTGTGTTGACAATGAACT+AGG | - | chr8.2:4304701-4304720 | MS.gene012485:CDS | 35.0% |
| ! | GCAATTCTGAAAAACCTGTA+AGG | - | chr8.2:4302108-4302127 | MS.gene012485:intron | 35.0% |
| ! | TATTGCTCGTTTTCTTCATC+AGG | - | chr8.2:4303802-4303821 | MS.gene012485:intron | 35.0% |
| ! | TCTGTTTTCACATCATGTTG+AGG | - | chr8.2:4302193-4302212 | MS.gene012485:intron | 35.0% |
| ! | TGCTATTGAGGCAAATTTTG+AGG | - | chr8.2:4302426-4302445 | MS.gene012485:intron | 35.0% |
| ! | TTGCTTTCTTTTGTTGAGGT+AGG | - | chr8.2:4302013-4302032 | MS.gene012485:intron | 35.0% |
| ! | TTTCCCTACTTTGGTTTATC+GGG | - | chr8.2:4301898-4301917 | MS.gene012485:CDS | 35.0% |
| ! | TTTTCCCGATAAACCAAAGT+AGG | + | chr8.2:4301905-4301924 | None:intergenic | 35.0% |
| !!! | ATTTTTTCTCGATCTCGAAG+AGG | + | chr8.2:4304669-4304688 | None:intergenic | 35.0% |
| !!! | CATTTTCAAGTCTCAGTGTA+AGG | - | chr8.2:4302449-4302468 | MS.gene012485:intron | 35.0% |
| !!! | TTTTCAAGTCTCAGTGTAAG+GGG | - | chr8.2:4302451-4302470 | MS.gene012485:intron | 35.0% |
| !!! | TTTTTTTTTACAGACACGGG+TGG | - | chr8.2:4302239-4302258 | MS.gene012485:intron | 35.0% |
| AAATAATCTGCAGCTCCAAG+AGG | + | chr8.2:4303884-4303903 | None:intergenic | 40.0% | |
| ACCCTTCATTGCAACATTGA+AGG | - | chr8.2:4303326-4303345 | MS.gene012485:intron | 40.0% | |
| AGATGCATAGCTCATGAGAT+TGG | - | chr8.2:4303440-4303459 | MS.gene012485:CDS | 40.0% | |
| ATCAGCTGAGATAGATCTTG+TGG | + | chr8.2:4301618-4301637 | None:intergenic | 40.0% | |
| CAATATCCGAGGCTAAACAA+AGG | - | chr8.2:4304633-4304652 | MS.gene012485:intron | 40.0% | |
| CCAAGAAGTGGAAGTAGTAA+TGG | - | chr8.2:4303681-4303700 | MS.gene012485:intron | 40.0% | |
| CCACCCTCATATAGATTATC+TGG | + | chr8.2:4303285-4303304 | None:intergenic | 40.0% | |
| CCAGATAATCTATATGAGGG+TGG | - | chr8.2:4303282-4303301 | MS.gene012485:intron | 40.0% | |
| CCATTACTACTTCCACTTCT+TGG | + | chr8.2:4303684-4303703 | None:intergenic | 40.0% | |
| CTCATGCAAAATGCAAACGA+GGG | - | chr8.2:4303941-4303960 | MS.gene012485:CDS | 40.0% | |
| GATCAACAGCAGAGAATACT+TGG | - | chr8.2:4304982-4305001 | MS.gene012485:CDS | 40.0% | |
| GATGCTGTGAAGATCACAAA+TGG | - | chr8.2:4301635-4301654 | MS.gene012485:intron | 40.0% | |
| GCTAATGGTGAATTGGTAGA+TGG | - | chr8.2:4301816-4301835 | MS.gene012485:CDS | 40.0% | |
| GTAATAAAGCAGCTGCACAT+AGG | - | chr8.2:4304200-4304219 | MS.gene012485:CDS | 40.0% | |
| GTTTATCGGGAAAATGTTGC+TGG | - | chr8.2:4301911-4301930 | MS.gene012485:CDS | 40.0% | |
| TCTCATGCAAAATGCAAACG+AGG | - | chr8.2:4303940-4303959 | MS.gene012485:CDS | 40.0% | |
| TGACTACCGCAAAATGACTT+CGG | - | chr8.2:4303472-4303491 | MS.gene012485:intron | 40.0% | |
| TGAGATAGATCTTGTGGATG+TGG | + | chr8.2:4301612-4301631 | None:intergenic | 40.0% | |
| TGCCAACCAAATAGAATCCT+TGG | + | chr8.2:4303597-4303616 | None:intergenic | 40.0% | |
| TGTCACAGCTTGAGATTTGT+TGG | - | chr8.2:4303046-4303065 | MS.gene012485:intron | 40.0% | |
| TTTCAGCAGTTGATTGGAGA+AGG | - | chr8.2:4303646-4303665 | MS.gene012485:intron | 40.0% | |
| ! | CCAATGATGCCTTATTGAAG+TGG | + | chr8.2:4304466-4304485 | None:intergenic | 40.0% |
| ! | CCACTTCAATAAGGCATCAT+TGG | - | chr8.2:4304463-4304482 | MS.gene012485:CDS | 40.0% |
| ! | CTTGGAGCTGCAGATTATTT+TGG | - | chr8.2:4303884-4303903 | MS.gene012485:intron | 40.0% |
| ! | TCAATAAGGCATCATTGGGA+CGG | - | chr8.2:4304468-4304487 | MS.gene012485:CDS | 40.0% |
| ! | TGAACAAACTCTAGAGGTTG+AGG | - | chr8.2:4304817-4304836 | MS.gene012485:intron | 40.0% |
| ! | TGCACATAGGTTTGTCACTT+TGG | - | chr8.2:4304213-4304232 | MS.gene012485:CDS | 40.0% |
| !! | ACATAGGTTTGTCACTTTGG+TGG | - | chr8.2:4304216-4304235 | MS.gene012485:CDS | 40.0% |
| !! | GAGATTTGTTGGTCTTCTGT+AGG | - | chr8.2:4303057-4303076 | MS.gene012485:CDS | 40.0% |
| !! | GTCATACCGAAGTCATTTTG+CGG | + | chr8.2:4303481-4303500 | None:intergenic | 40.0% |
| !! | TTGATGGCATCCCGATTTTT+GGG | - | chr8.2:4304173-4304192 | MS.gene012485:intron | 40.0% |
| !!! | GCTTGATTTTTTTCATCCCC+AGG | - | chr8.2:4302556-4302575 | MS.gene012485:intron | 40.0% |
| CAAAAGACCGCACCATTAGT+AGG | - | chr8.2:4304729-4304748 | MS.gene012485:CDS | 45.0% | |
| CACTGGCAAAACTATGCTGA+TGG | - | chr8.2:4302333-4302352 | MS.gene012485:CDS | 45.0% | |
| CCTTCGCATTCACCTGTAAA+AGG | - | chr8.2:4302286-4302305 | MS.gene012485:intron | 45.0% | |
| CTTCGTTCATACTCGACAAG+AGG | + | chr8.2:4301792-4301811 | None:intergenic | 45.0% | |
| GCGATCCAATTGGCATTCAT+CGG | + | chr8.2:4302090-4302109 | None:intergenic | 45.0% | |
| GCTGTGAAGATCACAAATGG+AGG | - | chr8.2:4301638-4301657 | MS.gene012485:intron | 45.0% | |
| GGCCAAGGATTCTATTTGGT+TGG | - | chr8.2:4303592-4303611 | MS.gene012485:CDS | 45.0% | |
| GGTAGATGGTGATAGTTGTC+AGG | - | chr8.2:4301830-4301849 | MS.gene012485:CDS | 45.0% | |
| TGCTAATTTGGACTGTAGGG+TGG | - | chr8.2:4303571-4303590 | MS.gene012485:CDS | 45.0% | |
| TGTCTCAGCCTCTATACAAC+AGG | - | chr8.2:4303163-4303182 | MS.gene012485:intron | 45.0% | |
| TTCACATCATGTTGAGGCTC+TGG | - | chr8.2:4302199-4302218 | MS.gene012485:intron | 45.0% | |
| TTCTTCCAATTTGAGGGCCT+GGG | + | chr8.2:4302576-4302595 | None:intergenic | 45.0% | |
| TTGGTTGGCAGTGATTCATC+TGG | - | chr8.2:4303607-4303626 | MS.gene012485:CDS | 45.0% | |
| TTTCTTCATCAGGTCCCGTT+GGG | - | chr8.2:4303812-4303831 | MS.gene012485:intron | 45.0% | |
| TTTCTTCCAATTTGAGGGCC+TGG | + | chr8.2:4302577-4302596 | None:intergenic | 45.0% | |
| ! | ATCTGGAGCACGATTTGAAG+TGG | + | chr8.2:4303268-4303287 | None:intergenic | 45.0% |
| ! | CCTTTTACAGGTGAATGCGA+AGG | + | chr8.2:4302289-4302308 | None:intergenic | 45.0% |
| ! | GAGCTTTGTGACAAACCTCT+TGG | - | chr8.2:4303866-4303885 | MS.gene012485:intron | 45.0% |
| ! | GCAAACGAGGGTTTCCATTT+TGG | - | chr8.2:4303953-4303972 | MS.gene012485:intron | 45.0% |
| ! | GTGTCCTTGTAGAAGCACAA+GGG | - | chr8.2:4302892-4302911 | MS.gene012485:CDS | 45.0% |
| ! | TGTGTCCTTGTAGAAGCACA+AGG | - | chr8.2:4302891-4302910 | MS.gene012485:CDS | 45.0% |
| ! | TTTTCTTCATCAGGTCCCGT+TGG | - | chr8.2:4303811-4303830 | MS.gene012485:intron | 45.0% |
| !! | CTTGATGGCATCCCGATTTT+TGG | - | chr8.2:4304172-4304191 | MS.gene012485:intron | 45.0% |
| ACTTCCACTTCTTGGGGAGT+AGG | + | chr8.2:4303676-4303695 | None:intergenic | 50.0% | |
| CAACATCCAGTGGATCTGAC+AGG | + | chr8.2:4302918-4302937 | None:intergenic | 50.0% | |
| CACATCCATTAGCTCCCAAC+GGG | + | chr8.2:4303829-4303848 | None:intergenic | 50.0% | |
| CTTTATGGAGGAGTAGGCAC+TGG | - | chr8.2:4302316-4302335 | MS.gene012485:CDS | 50.0% | |
| GATCCACTGGATGTTGTTGC+AGG | - | chr8.2:4302922-4302941 | MS.gene012485:CDS | 50.0% | |
| GCACATCCATTAGCTCCCAA+CGG | + | chr8.2:4303830-4303849 | None:intergenic | 50.0% | |
| GCATGCCGATGAATGCCAAT+TGG | - | chr8.2:4302082-4302101 | MS.gene012485:intron | 50.0% | |
| GGGTGGCCAAGGATTCTATT+TGG | - | chr8.2:4303588-4303607 | MS.gene012485:CDS | 50.0% | |
| TCTCCTGCAACAACATCCAG+TGG | + | chr8.2:4302928-4302947 | None:intergenic | 50.0% | |
| TCTTCCAATTTGAGGGCCTG+GGG | + | chr8.2:4302575-4302594 | None:intergenic | 50.0% | |
| TTTACAGACACGGGTGGCTT+TGG | - | chr8.2:4302245-4302264 | MS.gene012485:intron | 50.0% | |
| !! | ATATGAGGGTGGACTGCAGA+GGG | - | chr8.2:4303293-4303312 | MS.gene012485:intron | 50.0% |
| !! | TATATGAGGGTGGACTGCAG+AGG | - | chr8.2:4303292-4303311 | MS.gene012485:intron | 50.0% |
| CACACCTACTCCCCAAGAAG+TGG | - | chr8.2:4303669-4303688 | MS.gene012485:intron | 55.0% | |
| CAGGCCCTTGTGCTTCTACA+AGG | + | chr8.2:4302899-4302918 | None:intergenic | 55.0% | |
| CTCGATCTCGAAGAGGTCCT+GGG | + | chr8.2:4304662-4304681 | None:intergenic | 55.0% | |
| TCATCCCCAGGCCCTCAAAT+TGG | - | chr8.2:4302568-4302587 | MS.gene012485:intron | 55.0% | |
| TCTCGATCTCGAAGAGGTCC+TGG | + | chr8.2:4304663-4304682 | None:intergenic | 55.0% | |
| TTTGGACTGTAGGGTGGCCA+AGG | - | chr8.2:4303577-4303596 | MS.gene012485:CDS | 55.0% | |
| ! | GGGTGCCCTTTGTTTAGCCT+CGG | + | chr8.2:4304642-4304661 | None:intergenic | 55.0% |
| !! | AGGCTAAACAAAGGGCACCC+AGG | - | chr8.2:4304642-4304661 | MS.gene012485:intron | 55.0% |
| CAAGGGCCTGTCAGATCCAC+TGG | - | chr8.2:4302909-4302928 | MS.gene012485:CDS | 60.0% | |
| CAGGTCCCGTTGGGAGCTAA+TGG | - | chr8.2:4303821-4303840 | MS.gene012485:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4301485 | 4305063 | 4301485 | ID=MS.gene012485 |
| chr8.2 | mRNA | 4301485 | 4305063 | 4301485 | ID=MS.gene012485.t1;Parent=MS.gene012485 |
| chr8.2 | exon | 4304889 | 4305063 | 4304889 | ID=MS.gene012485.t1.exon1;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4304889 | 4305063 | 4304889 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4304697 | 4304776 | 4304697 | ID=MS.gene012485.t1.exon2;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4304697 | 4304776 | 4304697 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4304419 | 4304513 | 4304419 | ID=MS.gene012485.t1.exon3;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4304419 | 4304513 | 4304419 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4304174 | 4304296 | 4304174 | ID=MS.gene012485.t1.exon4;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4304174 | 4304296 | 4304174 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4303901 | 4303970 | 4303901 | ID=MS.gene012485.t1.exon5;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4303901 | 4303970 | 4303901 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4303558 | 4303644 | 4303558 | ID=MS.gene012485.t1.exon6;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4303558 | 4303644 | 4303558 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4303404 | 4303469 | 4303404 | ID=MS.gene012485.t1.exon7;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4303404 | 4303469 | 4303404 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4303201 | 4303293 | 4303201 | ID=MS.gene012485.t1.exon8;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4303201 | 4303293 | 4303201 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4303055 | 4303111 | 4303055 | ID=MS.gene012485.t1.exon9;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4303055 | 4303111 | 4303055 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4302831 | 4302959 | 4302831 | ID=MS.gene012485.t1.exon10;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4302831 | 4302959 | 4302831 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4302634 | 4302724 | 4302634 | ID=MS.gene012485.t1.exon11;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4302634 | 4302724 | 4302634 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4302308 | 4302396 | 4302308 | ID=MS.gene012485.t1.exon12;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4302308 | 4302396 | 4302308 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4301798 | 4301991 | 4301798 | ID=MS.gene012485.t1.exon13;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4301798 | 4301991 | 4301798 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| chr8.2 | exon | 4301485 | 4301575 | 4301485 | ID=MS.gene012485.t1.exon14;Parent=MS.gene012485.t1 |
| chr8.2 | CDS | 4301485 | 4301575 | 4301485 | ID=cds.MS.gene012485.t1;Parent=MS.gene012485.t1 |
| Gene Sequence |
| Protein sequence |
