Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012487.t1 | XP_013458571.1 | 96.8 | 507 | 9 | 1 | 1 | 507 | 1 | 500 | 1.00E-283 | 985.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012487.t1 | Q3V384 | 40.1 | 406 | 209 | 10 | 85 | 472 | 74 | 463 | 1.5e-68 | 261.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012487.t1 | A0A072USG5 | 96.8 | 507 | 9 | 1 | 1 | 507 | 1 | 500 | 7.5e-284 | 985.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene035633 | MS.gene012487 | PPI |
MS.gene57967 | MS.gene012487 | PPI |
MS.gene012485 | MS.gene012487 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012487.t1 | MTR_4g129950 | 96.844 | 507 | 9 | 1 | 1 | 507 | 1 | 500 | 0.0 | 1013 |
MS.gene012487.t1 | MTR_4g129950 | 97.638 | 381 | 9 | 0 | 1 | 381 | 1 | 381 | 0.0 | 781 |
MS.gene012487.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 83 | 417 | 2.26e-45 | 166 |
MS.gene012487.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 60 | 394 | 2.97e-45 | 166 |
MS.gene012487.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 9.06e-45 | 166 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012487.t1 | AT4G30490 | 71.298 | 439 | 108 | 4 | 67 | 494 | 63 | 494 | 0.0 | 652 |
MS.gene012487.t1 | AT4G28070 | 72.471 | 425 | 106 | 3 | 77 | 497 | 53 | 470 | 0.0 | 638 |
MS.gene012487.t1 | AT4G28070 | 70.353 | 425 | 106 | 4 | 77 | 497 | 53 | 461 | 0.0 | 613 |
MS.gene012487.t1 | AT2G25530 | 32.047 | 337 | 173 | 9 | 148 | 428 | 233 | 569 | 4.34e-45 | 168 |
MS.gene012487.t1 | AT2G25530 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.71e-37 | 145 |
Find 90 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 8.2:-4205139 | MS.gene012487:CDS |
CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8.2:-4203556 | MS.gene012487:CDS |
CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8.2:+4203760 | None:intergenic |
CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 8.2:-4205154 | MS.gene012487:CDS |
CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8.2:+4203759 | None:intergenic |
CCACCCTCATATAGATTATC+TGG | 0.285514 | 8.2:+4204158 | None:intergenic |
AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8.2:+4203591 | None:intergenic |
TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8.2:-4203283 | MS.gene012487:CDS |
ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8.2:-4204471 | MS.gene012487:intron |
TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8.2:+4202780 | None:intergenic |
AAATATCCTACATACCTTAC+AGG | 0.341666 | 8.2:+4205318 | None:intergenic |
TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8.2:-4204872 | MS.gene012487:intron |
GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8.2:-4203852 | MS.gene012487:CDS |
TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8.2:+4204802 | None:intergenic |
TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 8.2:-4205195 | MS.gene012487:intron |
TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8.2:-4203833 | MS.gene012487:CDS |
AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 8.2:-4205631 | MS.gene012487:CDS |
CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 8.2:+4205841 | None:intergenic |
TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8.2:-4203227 | MS.gene012487:CDS |
CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8.2:-4203619 | MS.gene012487:CDS |
GAGCAACAGCAGAGAATACT+TGG | 0.405855 | 8.2:-4202459 | MS.gene012487:CDS |
ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8.2:-4204114 | MS.gene012487:intron |
GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 8.2:-4204518 | MS.gene012487:CDS |
CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8.2:-4202739 | MS.gene012487:CDS |
ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8.2:+4202864 | None:intergenic |
TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8.2:-4203628 | MS.gene012487:intron |
TCTGATAAACATGTCTCAAT+TGG | 0.445162 | 8.2:+4205992 | None:intergenic |
TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8.2:+4204112 | None:intergenic |
CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8.2:-4202711 | MS.gene012487:intron |
GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8.2:-4203848 | MS.gene012487:CDS |
GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8.2:-4203574 | MS.gene012487:CDS |
ATATATATCATACCTACTAA+TGG | 0.455546 | 8.2:+4202699 | None:intergenic |
TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8.2:-4204162 | MS.gene012487:CDS |
CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8.2:-4203758 | MS.gene012487:CDS |
CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8.2:-4203759 | MS.gene012487:CDS |
TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8.2:+4205343 | None:intergenic |
TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8.2:+4203846 | None:intergenic |
CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8.2:-4204531 | MS.gene012487:CDS |
GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 8.2:-4205624 | MS.gene012487:CDS |
CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8.2:+4202781 | None:intergenic |
TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8.2:+4203583 | None:intergenic |
GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8.2:+4202801 | None:intergenic |
CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8.2:+4203614 | None:intergenic |
TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 8.2:-4205130 | MS.gene012487:CDS |
AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8.2:-4202862 | MS.gene012487:CDS |
TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 8.2:-4203863 | MS.gene012487:intron |
GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 8.2:-4205610 | MS.gene012487:intron |
AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8.2:-4204000 | MS.gene012487:CDS |
GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8.2:-4205358 | MS.gene012487:CDS |
ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8.2:+4203767 | None:intergenic |
TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 8.2:-4205639 | MS.gene012487:CDS |
TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8.2:-4203794 | MS.gene012487:CDS |
ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8.2:+4203761 | None:intergenic |
GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8.2:+4205353 | None:intergenic |
GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 8.2:-4205805 | MS.gene012487:CDS |
TGAATCCTATTCAAGCTACA+AGG | 0.543016 | 8.2:+4202390 | None:intergenic |
ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8.2:-4203224 | MS.gene012487:CDS |
AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8.2:-4202806 | MS.gene012487:CDS |
AATTTACCATGAATTCATCA+AGG | 0.550011 | 8.2:+4204465 | None:intergenic |
ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8.2:+4204175 | None:intergenic |
ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8.2:+4204113 | None:intergenic |
CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 8.2:-4205107 | MS.gene012487:CDS |
AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 8.2:-4205136 | MS.gene012487:CDS |
GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 8.2:-4205675 | MS.gene012487:intron |
TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 8.2:+4205831 | None:intergenic |
TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8.2:-4204322 | MS.gene012487:CDS |
CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 8.2:-4205124 | MS.gene012487:CDS |
TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8.2:-4202738 | MS.gene012487:CDS |
AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 8.2:-4202423 | MS.gene012487:CDS |
CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 8.2:+4205651 | None:intergenic |
CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8.2:-4203771 | MS.gene012487:CDS |
ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 8.2:+4205825 | None:intergenic |
ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8.2:-4204147 | MS.gene012487:CDS |
GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8.2:-4203240 | MS.gene012487:CDS |
GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8.2:+4204348 | None:intergenic |
TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8.2:-4204549 | MS.gene012487:intron |
CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8.2:+4204525 | None:intergenic |
TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8.2:-4203968 | MS.gene012487:intron |
TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 8.2:+4204515 | None:intergenic |
GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8.2:-4204161 | MS.gene012487:CDS |
AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8.2:+4203559 | None:intergenic |
CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8.2:-4204158 | MS.gene012487:CDS |
GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8.2:+4203613 | None:intergenic |
CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8.2:-4202807 | MS.gene012487:CDS |
TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8.2:-4204148 | MS.gene012487:CDS |
TATCATACCTACTAATGGTG+CGG | 0.657100 | 8.2:+4202704 | None:intergenic |
AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8.2:-4202798 | MS.gene012487:CDS |
GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8.2:-4204548 | MS.gene012487:intron |
TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 8.2:+4205845 | None:intergenic |
GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 8.2:-4205802 | MS.gene012487:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTTAATGTTCCAAAA+TGG | + | chr8.2:4204948-4204967 | None:intergenic | 15.0% |
!!! | AAAAATTGTACAATTAGTTT+TGG | - | chr8.2:4205749-4205768 | MS.gene012487:intron | 15.0% |
!!! | ATCTTTAAAATTAGAATTTC+AGG | + | chr8.2:4205398-4205417 | None:intergenic | 15.0% |
!!! | CTTTGAACATTAATTAATTT+TGG | - | chr8.2:4203761-4203780 | MS.gene012487:CDS | 15.0% |
!!! | GCTTTAAATATTTTTATAGT+TGG | - | chr8.2:4204330-4204349 | MS.gene012487:CDS | 15.0% |
!!! | TATTTGTTTTTATGCTAATT+TGG | - | chr8.2:4204537-4204556 | MS.gene012487:CDS | 15.0% |
!!! | TGGTTTTTATTCATAAAATA+GGG | - | chr8.2:4205851-4205870 | MS.gene012487:CDS | 15.0% |
!!! | TTGGTTTTTATTCATAAAAT+AGG | - | chr8.2:4205850-4205869 | MS.gene012487:CDS | 15.0% |
!! | AAAAAAAGGATACATCTAAA+AGG | + | chr8.2:4203654-4203673 | None:intergenic | 20.0% |
!! | ACAAAATTAAGAAATCAAGA+CGG | + | chr8.2:4203378-4203397 | None:intergenic | 20.0% |
!! | ATATATATCATACCTACTAA+TGG | + | chr8.2:4205722-4205741 | None:intergenic | 20.0% |
!! | ATGAATAAAAACCAAACAAT+GGG | + | chr8.2:4205845-4205864 | None:intergenic | 20.0% |
!! | CCAAAAGAATACATAATTAT+TGG | + | chr8.2:4203706-4203725 | None:intergenic | 20.0% |
!! | GTAAAAGGTTTATATCTTTA+TGG | - | chr8.2:4203279-4203298 | MS.gene012487:CDS | 20.0% |
!! | TATGAATAAAAACCAAACAA+TGG | + | chr8.2:4205846-4205865 | None:intergenic | 20.0% |
!! | TATGTAAACTTACTTGTAAT+AGG | + | chr8.2:4203619-4203638 | None:intergenic | 20.0% |
!! | TTCTTTCATTGTGATAATTT+CGG | - | chr8.2:4205005-4205024 | MS.gene012487:intron | 20.0% |
!!! | AATATTTTTATAGTTGGAAG+TGG | - | chr8.2:4204336-4204355 | MS.gene012487:CDS | 20.0% |
!!! | ATGGCATTAATTTTATATAG+AGG | + | chr8.2:4205495-4205514 | None:intergenic | 20.0% |
!!! | CCAATAATTATGTATTCTTT+TGG | - | chr8.2:4203703-4203722 | MS.gene012487:intron | 20.0% |
!!! | TAAAGATATAAACCTTTTAC+AGG | + | chr8.2:4203279-4203298 | None:intergenic | 20.0% |
!!! | TATTAAAATATGAAGTGCTT+GGG | + | chr8.2:4205291-4205310 | None:intergenic | 20.0% |
!!! | TGGCATTAATTTTATATAGA+GGG | + | chr8.2:4205494-4205513 | None:intergenic | 20.0% |
!!! | TTTTCTTATCTGATTTGTAT+TGG | - | chr8.2:4202706-4202725 | MS.gene012487:intron | 20.0% |
! | AAAAATAGTAACAATATCCG+AGG | - | chr8.2:4205600-4205619 | MS.gene012487:intron | 25.0% |
! | AAAGGTTTATATCTTTATGG+AGG | - | chr8.2:4203282-4203301 | MS.gene012487:CDS | 25.0% |
! | AATTTACCATGAATTCATCA+AGG | + | chr8.2:4203956-4203975 | None:intergenic | 25.0% |
! | AGAAGACAAAGTTTAAATGT+GGG | + | chr8.2:4205244-4205263 | None:intergenic | 25.0% |
! | AGATAATGATTTCATTGTTG+TGG | - | chr8.2:4204972-4204991 | MS.gene012487:intron | 25.0% |
! | GGAAATCTGTAAAATTATGA+AGG | + | chr8.2:4205054-4205073 | None:intergenic | 25.0% |
! | TGAATAAAAACCAAACAATG+GGG | + | chr8.2:4205844-4205863 | None:intergenic | 25.0% |
! | TGATCAGTAATCATTAATCA+TGG | + | chr8.2:4205912-4205931 | None:intergenic | 25.0% |
! | TGTTCAAATCTTGAACTTTA+TGG | - | chr8.2:4203146-4203165 | MS.gene012487:intron | 25.0% |
! | TTATTACTAAGCCCAAAAAT+CGG | + | chr8.2:4205165-4205184 | None:intergenic | 25.0% |
! | TTTATGATCAATTGTGAGTT+TGG | - | chr8.2:4203340-4203359 | MS.gene012487:intron | 25.0% |
! | TTTATGGATCTCTCATATAA+TGG | + | chr8.2:4205075-4205094 | None:intergenic | 25.0% |
!! | CTATTAAAATATGAAGTGCT+TGG | + | chr8.2:4205292-4205311 | None:intergenic | 25.0% |
!! | TGAAATTATTTTCCCTACTT+TGG | - | chr8.2:4202867-4202886 | MS.gene012487:CDS | 25.0% |
!! | TTTTGTATTACATGCTATTG+AGG | - | chr8.2:4203392-4203411 | MS.gene012487:intron | 25.0% |
!!! | ATTTTTTGAAAGAGATCAAG+AGG | + | chr8.2:4205586-4205605 | None:intergenic | 25.0% |
!!! | CATTGTGTAACATTGATTTA+TGG | + | chr8.2:4205091-4205110 | None:intergenic | 25.0% |
!!! | CCTTTTTTTTTTTACAGACA+CGG | - | chr8.2:4203213-4203232 | MS.gene012487:intron | 25.0% |
!!! | CTTTTTTTTTTTACAGACAC+GGG | - | chr8.2:4203214-4203233 | MS.gene012487:intron | 25.0% |
!!! | TTTTTTGAAAGAGATCAAGA+GGG | + | chr8.2:4205585-4205604 | None:intergenic | 25.0% |
!!! | TTTTTTGCTTTCTTTTGTTG+AGG | - | chr8.2:4202987-4203006 | MS.gene012487:intron | 25.0% |
AAAAAGTTTCAGCAGTTGAT+TGG | - | chr8.2:4204618-4204637 | MS.gene012487:intron | 30.0% | |
AAATATCCTACATACCTTAC+AGG | + | chr8.2:4203103-4203122 | None:intergenic | 30.0% | |
AAGAATTGCTAATGGTGAAT+TGG | - | chr8.2:4202787-4202806 | MS.gene012487:CDS | 30.0% | |
AAGCTCTTCAAAAGGAAAAT+AGG | + | chr8.2:4204830-4204849 | None:intergenic | 30.0% | |
AAGCTTATTCCACTTCAATA+AGG | - | chr8.2:4205432-4205451 | MS.gene012487:intron | 30.0% | |
ACATAATCTCATTCATAGCT+AGG | + | chr8.2:4205335-4205354 | None:intergenic | 30.0% | |
ATTATGCCTTGATGAATTCA+TGG | - | chr8.2:4203947-4203966 | MS.gene012487:intron | 30.0% | |
CAAGTAGGGAATAGAAAAAA+AGG | + | chr8.2:4203668-4203687 | None:intergenic | 30.0% | |
CATAAAATCCTGTTGTATAG+AGG | + | chr8.2:4204152-4204171 | None:intergenic | 30.0% | |
CCGTGTCTGTAAAAAAAAAA+AGG | + | chr8.2:4203216-4203235 | None:intergenic | 30.0% | |
CTTCATTTCTTCAATGTGTT+TGG | - | chr8.2:4204198-4204217 | MS.gene012487:intron | 30.0% | |
GAGAAGACAAAGTTTAAATG+TGG | + | chr8.2:4205245-4205264 | None:intergenic | 30.0% | |
TAATTGACAAACAGAGTATG+AGG | - | chr8.2:4203821-4203840 | MS.gene012487:CDS | 30.0% | |
TACATCAGTATACACATACT+AGG | + | chr8.2:4204394-4204413 | None:intergenic | 30.0% | |
TAGTATGTGTATACTGATGT+AGG | - | chr8.2:4204393-4204412 | MS.gene012487:intron | 30.0% | |
TATGAACGAAGAATTGCTAA+TGG | - | chr8.2:4202779-4202798 | MS.gene012487:CDS | 30.0% | |
TATTACTAAGCCCAAAAATC+GGG | + | chr8.2:4205164-4205183 | None:intergenic | 30.0% | |
TCATAAAATAGGGCGAAAAA+TGG | - | chr8.2:4205861-4205880 | MS.gene012487:CDS | 30.0% | |
TCTGATAAACATGTCTCAAT+TGG | + | chr8.2:4202429-4202448 | None:intergenic | 30.0% | |
TGTTACAAACAAACAAAGCA+TGG | + | chr8.2:4205514-4205533 | None:intergenic | 30.0% | |
TTATATCTTTATGGAGGAGT+AGG | - | chr8.2:4203288-4203307 | MS.gene012487:CDS | 30.0% | |
TTATGCTAATTTGGACTGTA+GGG | - | chr8.2:4204546-4204565 | MS.gene012487:intron | 30.0% | |
TTTAACCTCATAAGAACACA+TGG | + | chr8.2:4203486-4203505 | None:intergenic | 30.0% | |
TTTATGCTAATTTGGACTGT+AGG | - | chr8.2:4204545-4204564 | MS.gene012487:intron | 30.0% | |
TTTCATACTTTAGCACTTGA+TGG | - | chr8.2:4205135-4205154 | MS.gene012487:CDS | 30.0% | |
! | CAACACTTTTCAAAGTAACA+AGG | + | chr8.2:4202493-4202512 | None:intergenic | 30.0% |
! | CTCTATACAACAGGATTTTA+TGG | - | chr8.2:4204150-4204169 | MS.gene012487:CDS | 30.0% |
! | CTCTTTTTCTTCCAATTTGA+GGG | + | chr8.2:4203560-4203579 | None:intergenic | 30.0% |
! | TGGATGTAAGTCCTTTTAAA+TGG | - | chr8.2:4205214-4205233 | MS.gene012487:intron | 30.0% |
! | TTTGTGTTGACAATGAACTA+GGG | - | chr8.2:4205680-4205699 | MS.gene012487:intron | 30.0% |
!! | ATGCTTTGTTTGTTTGTAAC+AGG | - | chr8.2:4205513-4205532 | MS.gene012487:intron | 30.0% |
!! | TTTTCCCTACTTTGGTTTAT+CGG | - | chr8.2:4202875-4202894 | MS.gene012487:CDS | 30.0% |
!!! | ATTTTCAAGTCTCAGTGTAA+GGG | - | chr8.2:4203428-4203447 | MS.gene012487:intron | 30.0% |
AATATCCGAGGCTAAACAAA+GGG | - | chr8.2:4205612-4205631 | MS.gene012487:CDS | 35.0% | |
AATCAAGCATACAATAGAGC+TGG | + | chr8.2:4203522-4203541 | None:intergenic | 35.0% | |
AATTCTTCCCTAAGTCAAGT+AGG | + | chr8.2:4203683-4203702 | None:intergenic | 35.0% | |
ACCTTCAATGTTGCAATGAA+GGG | + | chr8.2:4204308-4204327 | None:intergenic | 35.0% | |
AGAGGGTAACTAAAATGCAT+AGG | + | chr8.2:4205477-4205496 | None:intergenic | 35.0% | |
AGATCATGAACAAACTCTAG+AGG | - | chr8.2:4205789-4205808 | MS.gene012487:intron | 35.0% | |
AGATTATTGTGTTCAGCTGA+TGG | - | chr8.2:4205556-4205575 | MS.gene012487:intron | 35.0% | |
AGCAGAAAAGAAAGAAAGAG+AGG | - | chr8.2:4205995-4206014 | MS.gene012487:CDS | 35.0% | |
ATCAGCTGAACACAATAATC+TGG | + | chr8.2:4205557-4205576 | None:intergenic | 35.0% | |
ATCATGCATGCATTTGTTCA+TGG | - | chr8.2:4202922-4202941 | MS.gene012487:intron | 35.0% | |
ATGTAAATTGCCCCATTGTT+TGG | - | chr8.2:4205831-4205850 | MS.gene012487:CDS | 35.0% | |
ATGTGGGCAAACCATTTAAA+AGG | + | chr8.2:4205228-4205247 | None:intergenic | 35.0% | |
ATTACTACTTCCACTTCTTG+GGG | + | chr8.2:4204660-4204679 | None:intergenic | 35.0% | |
ATTCTTCCCTAAGTCAAGTA+GGG | + | chr8.2:4203682-4203701 | None:intergenic | 35.0% | |
ATTTGAACAGACATATCAGC+AGG | + | chr8.2:4203135-4203154 | None:intergenic | 35.0% | |
CAAGAAGTGGAAGTAGTAAT+GGG | - | chr8.2:4204660-4204679 | MS.gene012487:intron | 35.0% | |
CATTACTACTTCCACTTCTT+GGG | + | chr8.2:4204661-4204680 | None:intergenic | 35.0% | |
CCTCAAATTGGAAGAAAAAG+AGG | - | chr8.2:4203558-4203577 | MS.gene012487:CDS | 35.0% | |
CTTGTGGATGTGGTAATAAA+TGG | + | chr8.2:4202580-4202599 | None:intergenic | 35.0% | |
GAAAAACCTGTAAGGTATGT+AGG | - | chr8.2:4203094-4203113 | MS.gene012487:intron | 35.0% | |
GAGATCGAGAAAAAATGATG+AGG | - | chr8.2:4205651-4205670 | MS.gene012487:CDS | 35.0% | |
GCGATTAAGTATCAATGCAT+CGG | + | chr8.2:4204073-4204092 | None:intergenic | 35.0% | |
GCTCCAGATAATCTATATGA+GGG | - | chr8.2:4204257-4204276 | MS.gene012487:intron | 35.0% | |
GTTACAGTAACTAACAGAAG+TGG | - | chr8.2:4202743-4202762 | MS.gene012487:CDS | 35.0% | |
TACCTTCAATGTTGCAATGA+AGG | + | chr8.2:4204309-4204328 | None:intergenic | 35.0% | |
TATCATACCTACTAATGGTG+CGG | + | chr8.2:4205717-4205736 | None:intergenic | 35.0% | |
TCTATTCCCTACTTGACTTA+GGG | - | chr8.2:4203673-4203692 | MS.gene012487:intron | 35.0% | |
TGCTCCAGATAATCTATATG+AGG | - | chr8.2:4204256-4204275 | MS.gene012487:intron | 35.0% | |
TGGATGTGGTAATAAATGGA+CGG | + | chr8.2:4202576-4202595 | None:intergenic | 35.0% | |
TTATGCCATGTGTTCTTATG+AGG | - | chr8.2:4203478-4203497 | MS.gene012487:intron | 35.0% | |
TTCAGACATCTATTCAGCAA+AGG | - | chr8.2:4204096-4204115 | MS.gene012487:intron | 35.0% | |
TTCTATTCCCTACTTGACTT+AGG | - | chr8.2:4203672-4203691 | MS.gene012487:intron | 35.0% | |
TTGTCACAAAGCTCTTCAAA+AGG | + | chr8.2:4204838-4204857 | None:intergenic | 35.0% | |
TTTCAGAATTGCGATCCAAT+TGG | + | chr8.2:4203078-4203097 | None:intergenic | 35.0% | |
TTTCCCGATAAACCAAAGTA+GGG | + | chr8.2:4202882-4202901 | None:intergenic | 35.0% | |
! | AGTGTAAGGGGAATATTTTG+AGG | - | chr8.2:4203441-4203460 | MS.gene012487:intron | 35.0% |
! | CACTTCAATAAGGCATCATT+GGG | - | chr8.2:4205442-4205461 | MS.gene012487:intron | 35.0% |
! | CCTCTTTTTCTTCCAATTTG+AGG | + | chr8.2:4203561-4203580 | None:intergenic | 35.0% |
! | CTTTGTGTTGACAATGAACT+AGG | - | chr8.2:4205679-4205698 | MS.gene012487:intron | 35.0% |
! | GCAATTCTGAAAAACCTGTA+AGG | - | chr8.2:4203086-4203105 | MS.gene012487:intron | 35.0% |
! | TATTGCTCGTTTTCTTCATC+AGG | - | chr8.2:4204780-4204799 | MS.gene012487:intron | 35.0% |
! | TCTGTTTTCACATCATGTTG+AGG | - | chr8.2:4203171-4203190 | MS.gene012487:intron | 35.0% |
! | TGCTATTGAGGCAAATTTTG+AGG | - | chr8.2:4203404-4203423 | MS.gene012487:intron | 35.0% |
! | TTGCTTTCTTTTGTTGAGGT+AGG | - | chr8.2:4202991-4203010 | MS.gene012487:intron | 35.0% |
! | TTTCCCTACTTTGGTTTATC+GGG | - | chr8.2:4202876-4202895 | MS.gene012487:CDS | 35.0% |
! | TTTTCCCGATAAACCAAAGT+AGG | + | chr8.2:4202883-4202902 | None:intergenic | 35.0% |
!!! | ATTTTTTCTCGATCTCGAAG+AGG | + | chr8.2:4205647-4205666 | None:intergenic | 35.0% |
!!! | CATTTTCAAGTCTCAGTGTA+AGG | - | chr8.2:4203427-4203446 | MS.gene012487:intron | 35.0% |
!!! | TTTTCAAGTCTCAGTGTAAG+GGG | - | chr8.2:4203429-4203448 | MS.gene012487:intron | 35.0% |
!!! | TTTTTTTTTACAGACACGGG+TGG | - | chr8.2:4203217-4203236 | MS.gene012487:intron | 35.0% |
AAATAATCTGCAGCTCCAAG+AGG | + | chr8.2:4204862-4204881 | None:intergenic | 40.0% | |
ACCCTTCATTGCAACATTGA+AGG | - | chr8.2:4204304-4204323 | MS.gene012487:intron | 40.0% | |
AGATGCATAGCTCATGAGAT+TGG | - | chr8.2:4204418-4204437 | MS.gene012487:intron | 40.0% | |
ATCAGCTGAGATAGATCTTG+TGG | + | chr8.2:4202596-4202615 | None:intergenic | 40.0% | |
CAATATCCGAGGCTAAACAA+AGG | - | chr8.2:4205611-4205630 | MS.gene012487:CDS | 40.0% | |
CCAAGAAGTGGAAGTAGTAA+TGG | - | chr8.2:4204659-4204678 | MS.gene012487:intron | 40.0% | |
CCACCCTCATATAGATTATC+TGG | + | chr8.2:4204263-4204282 | None:intergenic | 40.0% | |
CCAGATAATCTATATGAGGG+TGG | - | chr8.2:4204260-4204279 | MS.gene012487:intron | 40.0% | |
CCATTACTACTTCCACTTCT+TGG | + | chr8.2:4204662-4204681 | None:intergenic | 40.0% | |
CTCATGCAAAATGCAAACGA+GGG | - | chr8.2:4204919-4204938 | MS.gene012487:intron | 40.0% | |
GATGCTGTGAAGATCACAAA+TGG | - | chr8.2:4202613-4202632 | MS.gene012487:intron | 40.0% | |
GCTAATGGTGAATTGGTAGA+TGG | - | chr8.2:4202794-4202813 | MS.gene012487:CDS | 40.0% | |
GTAATAAAGCAGCTGCACAT+AGG | - | chr8.2:4205178-4205197 | MS.gene012487:CDS | 40.0% | |
GTTTATCGGGAAAATGTTGC+TGG | - | chr8.2:4202889-4202908 | MS.gene012487:intron | 40.0% | |
TCTCATGCAAAATGCAAACG+AGG | - | chr8.2:4204918-4204937 | MS.gene012487:intron | 40.0% | |
TGACTACCGCAAAATGACTT+CGG | - | chr8.2:4204450-4204469 | MS.gene012487:intron | 40.0% | |
TGAGATAGATCTTGTGGATG+TGG | + | chr8.2:4202590-4202609 | None:intergenic | 40.0% | |
TGCCAACCAAATAGAATCCT+TGG | + | chr8.2:4204575-4204594 | None:intergenic | 40.0% | |
TGTCACAGCTTGAGATTTGT+TGG | - | chr8.2:4204024-4204043 | MS.gene012487:intron | 40.0% | |
TTTCAGCAGTTGATTGGAGA+AGG | - | chr8.2:4204624-4204643 | MS.gene012487:intron | 40.0% | |
! | CCAATGATGCCTTATTGAAG+TGG | + | chr8.2:4205444-4205463 | None:intergenic | 40.0% |
! | CCACTTCAATAAGGCATCAT+TGG | - | chr8.2:4205441-4205460 | MS.gene012487:intron | 40.0% |
! | CTTGGAGCTGCAGATTATTT+TGG | - | chr8.2:4204862-4204881 | MS.gene012487:CDS | 40.0% |
! | TCAATAAGGCATCATTGGGA+CGG | - | chr8.2:4205446-4205465 | MS.gene012487:intron | 40.0% |
! | TGAACAAACTCTAGAGGTTG+AGG | - | chr8.2:4205795-4205814 | MS.gene012487:intron | 40.0% |
! | TGCACATAGGTTTGTCACTT+TGG | - | chr8.2:4205191-4205210 | MS.gene012487:CDS | 40.0% |
!! | ACATAGGTTTGTCACTTTGG+TGG | - | chr8.2:4205194-4205213 | MS.gene012487:intron | 40.0% |
!! | GAGATTTGTTGGTCTTCTGT+AGG | - | chr8.2:4204035-4204054 | MS.gene012487:intron | 40.0% |
!! | GTCATACCGAAGTCATTTTG+CGG | + | chr8.2:4204459-4204478 | None:intergenic | 40.0% |
!! | TTGATGGCATCCCGATTTTT+GGG | - | chr8.2:4205151-4205170 | MS.gene012487:CDS | 40.0% |
!!! | GCTTGATTTTTTTCATCCCC+AGG | - | chr8.2:4203534-4203553 | MS.gene012487:intron | 40.0% |
CAAAAGACCGCACCATTAGT+AGG | - | chr8.2:4205707-4205726 | MS.gene012487:intron | 45.0% | |
CACTGGCAAAACTATGCTGA+TGG | - | chr8.2:4203311-4203330 | MS.gene012487:intron | 45.0% | |
CCTTCGCATTCACCTGTAAA+AGG | - | chr8.2:4203264-4203283 | MS.gene012487:CDS | 45.0% | |
CTTCGTTCATACTCGACAAG+AGG | + | chr8.2:4202770-4202789 | None:intergenic | 45.0% | |
GAGCAACAGCAGAGAATACT+TGG | - | chr8.2:4205959-4205978 | MS.gene012487:CDS | 45.0% | |
GCGATCCAATTGGCATTCAT+CGG | + | chr8.2:4203068-4203087 | None:intergenic | 45.0% | |
GCTGTGAAGATCACAAATGG+AGG | - | chr8.2:4202616-4202635 | MS.gene012487:intron | 45.0% | |
GGCCAAGGATTCTATTTGGT+TGG | - | chr8.2:4204570-4204589 | MS.gene012487:intron | 45.0% | |
GGTAGATGGTGATAGTTGTC+AGG | - | chr8.2:4202808-4202827 | MS.gene012487:CDS | 45.0% | |
TGCTAATTTGGACTGTAGGG+TGG | - | chr8.2:4204549-4204568 | MS.gene012487:intron | 45.0% | |
TGTCTCAGCCTCTATACAAC+AGG | - | chr8.2:4204141-4204160 | MS.gene012487:CDS | 45.0% | |
TTCACATCATGTTGAGGCTC+TGG | - | chr8.2:4203177-4203196 | MS.gene012487:intron | 45.0% | |
TTCTTCCAATTTGAGGGCCT+GGG | + | chr8.2:4203554-4203573 | None:intergenic | 45.0% | |
TTGGTTGGCAGTGATTCATC+TGG | - | chr8.2:4204585-4204604 | MS.gene012487:intron | 45.0% | |
TTTCTTCATCAGGTCCCGTT+GGG | - | chr8.2:4204790-4204809 | MS.gene012487:intron | 45.0% | |
TTTCTTCCAATTTGAGGGCC+TGG | + | chr8.2:4203555-4203574 | None:intergenic | 45.0% | |
! | ATCTGGAGCACGATTTGAAG+TGG | + | chr8.2:4204246-4204265 | None:intergenic | 45.0% |
! | CCTTTTACAGGTGAATGCGA+AGG | + | chr8.2:4203267-4203286 | None:intergenic | 45.0% |
! | GAGCTTTGTGACAAACCTCT+TGG | - | chr8.2:4204844-4204863 | MS.gene012487:CDS | 45.0% |
! | GCAAACGAGGGTTTCCATTT+TGG | - | chr8.2:4204931-4204950 | MS.gene012487:intron | 45.0% |
! | GTGTCCTTGTAGAAGCACAA+GGG | - | chr8.2:4203870-4203889 | MS.gene012487:intron | 45.0% |
! | TGTGTCCTTGTAGAAGCACA+AGG | - | chr8.2:4203869-4203888 | MS.gene012487:intron | 45.0% |
! | TTTTCTTCATCAGGTCCCGT+TGG | - | chr8.2:4204789-4204808 | MS.gene012487:intron | 45.0% |
!! | CTTGATGGCATCCCGATTTT+TGG | - | chr8.2:4205150-4205169 | MS.gene012487:CDS | 45.0% |
ACTTCCACTTCTTGGGGAGT+AGG | + | chr8.2:4204654-4204673 | None:intergenic | 50.0% | |
CAACATCCAGTGGATCTGAC+AGG | + | chr8.2:4203896-4203915 | None:intergenic | 50.0% | |
CACATCCATTAGCTCCCAAC+GGG | + | chr8.2:4204807-4204826 | None:intergenic | 50.0% | |
CTTTATGGAGGAGTAGGCAC+TGG | - | chr8.2:4203294-4203313 | MS.gene012487:intron | 50.0% | |
GATCCACTGGATGTTGTTGC+AGG | - | chr8.2:4203900-4203919 | MS.gene012487:intron | 50.0% | |
GCACATCCATTAGCTCCCAA+CGG | + | chr8.2:4204808-4204827 | None:intergenic | 50.0% | |
GCATGCCGATGAATGCCAAT+TGG | - | chr8.2:4203060-4203079 | MS.gene012487:intron | 50.0% | |
GGGTGGCCAAGGATTCTATT+TGG | - | chr8.2:4204566-4204585 | MS.gene012487:intron | 50.0% | |
TCTCCTGCAACAACATCCAG+TGG | + | chr8.2:4203906-4203925 | None:intergenic | 50.0% | |
TCTTCCAATTTGAGGGCCTG+GGG | + | chr8.2:4203553-4203572 | None:intergenic | 50.0% | |
TTTACAGACACGGGTGGCTT+TGG | - | chr8.2:4203223-4203242 | MS.gene012487:CDS | 50.0% | |
!! | ATATGAGGGTGGACTGCAGA+GGG | - | chr8.2:4204271-4204290 | MS.gene012487:intron | 50.0% |
!! | TATATGAGGGTGGACTGCAG+AGG | - | chr8.2:4204270-4204289 | MS.gene012487:intron | 50.0% |
CACACCTACTCCCCAAGAAG+TGG | - | chr8.2:4204647-4204666 | MS.gene012487:intron | 55.0% | |
CAGGCCCTTGTGCTTCTACA+AGG | + | chr8.2:4203877-4203896 | None:intergenic | 55.0% | |
CTCGATCTCGAAGAGGTCCT+GGG | + | chr8.2:4205640-4205659 | None:intergenic | 55.0% | |
TCATCCCCAGGCCCTCAAAT+TGG | - | chr8.2:4203546-4203565 | MS.gene012487:intron | 55.0% | |
TCTCGATCTCGAAGAGGTCC+TGG | + | chr8.2:4205641-4205660 | None:intergenic | 55.0% | |
TTTGGACTGTAGGGTGGCCA+AGG | - | chr8.2:4204555-4204574 | MS.gene012487:intron | 55.0% | |
! | GGGTGCCCTTTGTTTAGCCT+CGG | + | chr8.2:4205620-4205639 | None:intergenic | 55.0% |
!! | AGGCTAAACAAAGGGCACCC+AGG | - | chr8.2:4205620-4205639 | MS.gene012487:CDS | 55.0% |
CAAGGGCCTGTCAGATCCAC+TGG | - | chr8.2:4203887-4203906 | MS.gene012487:intron | 60.0% | |
CAGGTCCCGTTGGGAGCTAA+TGG | - | chr8.2:4204799-4204818 | MS.gene012487:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 4202400 | 4206040 | 4202400 | ID=MS.gene012487 |
chr8.2 | mRNA | 4202400 | 4206040 | 4202400 | ID=MS.gene012487.t1;Parent=MS.gene012487 |
chr8.2 | exon | 4205803 | 4206040 | 4205803 | ID=MS.gene012487.t1.exon1;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4205803 | 4206040 | 4205803 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4205611 | 4205690 | 4205611 | ID=MS.gene012487.t1.exon2;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4205611 | 4205690 | 4205611 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4205333 | 4205427 | 4205333 | ID=MS.gene012487.t1.exon3;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4205333 | 4205427 | 4205333 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4205088 | 4205210 | 4205088 | ID=MS.gene012487.t1.exon4;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4205088 | 4205210 | 4205088 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4204815 | 4204884 | 4204815 | ID=MS.gene012487.t1.exon5;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4204815 | 4204884 | 4204815 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4204472 | 4204558 | 4204472 | ID=MS.gene012487.t1.exon6;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4204472 | 4204558 | 4204472 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4204318 | 4204383 | 4204318 | ID=MS.gene012487.t1.exon7;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4204318 | 4204383 | 4204318 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4204115 | 4204207 | 4204115 | ID=MS.gene012487.t1.exon8;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4204115 | 4204207 | 4204115 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4203969 | 4204025 | 4203969 | ID=MS.gene012487.t1.exon9;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4203969 | 4204025 | 4203969 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4203745 | 4203873 | 4203745 | ID=MS.gene012487.t1.exon10;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4203745 | 4203873 | 4203745 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4203548 | 4203638 | 4203548 | ID=MS.gene012487.t1.exon11;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4203548 | 4203638 | 4203548 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4203222 | 4203310 | 4203222 | ID=MS.gene012487.t1.exon12;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4203222 | 4203310 | 4203222 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4202712 | 4202905 | 4202712 | ID=MS.gene012487.t1.exon13;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4202712 | 4202905 | 4202712 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4202608 | 4202629 | 4202608 | ID=MS.gene012487.t1.exon14;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4202608 | 4202629 | 4202608 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
chr8.2 | exon | 4202400 | 4202489 | 4202400 | ID=MS.gene012487.t1.exon15;Parent=MS.gene012487.t1 |
chr8.2 | CDS | 4202400 | 4202489 | 4202400 | ID=cds.MS.gene012487.t1;Parent=MS.gene012487.t1 |
Gene Sequence |
Protein sequence |