Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57967.t1 | XP_013458571.1 | 98.8 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 4.00E-288 | 1000 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57967.t1 | Q3V384 | 40.1 | 414 | 214 | 10 | 85 | 480 | 74 | 471 | 9.0e-71 | 269.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57967.t1 | A0A072USG5 | 98.8 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 2.9e-288 | 1000.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060850 | MS.gene57967 | 0.816136 | 6.46E-52 | -1.69E-46 |
MS.gene060851 | MS.gene57967 | 0.822454 | 2.35E-53 | -1.69E-46 |
MS.gene060852 | MS.gene57967 | 0.820814 | 5.62E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene57967 | MS.gene035633 | PPI |
MS.gene57967 | MS.gene012485 | PPI |
MS.gene57967 | MS.gene012487 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57967.t1 | MTR_4g129950 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
MS.gene57967.t1 | MTR_4g129950 | 97.638 | 381 | 9 | 0 | 1 | 381 | 1 | 381 | 0.0 | 783 |
MS.gene57967.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 83 | 417 | 1.65e-45 | 167 |
MS.gene57967.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 60 | 394 | 1.96e-45 | 166 |
MS.gene57967.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 4.55e-45 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57967.t1 | AT4G30490 | 72.685 | 432 | 107 | 3 | 67 | 487 | 63 | 494 | 0.0 | 663 |
MS.gene57967.t1 | AT4G28070 | 73.923 | 418 | 105 | 2 | 77 | 490 | 53 | 470 | 0.0 | 649 |
MS.gene57967.t1 | AT4G28070 | 71.770 | 418 | 105 | 3 | 77 | 490 | 53 | 461 | 0.0 | 623 |
MS.gene57967.t1 | AT2G25530 | 30.732 | 410 | 209 | 12 | 148 | 482 | 233 | 642 | 9.72e-46 | 169 |
MS.gene57967.t1 | AT2G25530 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.25e-37 | 145 |
Find 90 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 8.4:+5022870 | MS.gene57967:CDS |
CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8.4:+5024462 | MS.gene57967:CDS |
CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8.4:-5024249 | None:intergenic |
CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 8.4:+5022855 | MS.gene57967:CDS |
CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8.4:-5024250 | None:intergenic |
CCACCCTCATATAGATTATC+TGG | 0.285514 | 8.4:-5023851 | None:intergenic |
AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8.4:-5024427 | None:intergenic |
TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8.4:+5024735 | MS.gene57967:CDS |
ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8.4:+5023538 | MS.gene57967:CDS |
AAATATCCTATATACCTTAC+AGG | 0.319411 | 8.4:-5022690 | None:intergenic |
TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8.4:-5025238 | None:intergenic |
TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8.4:+5023137 | MS.gene57967:intron |
GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8.4:+5024157 | MS.gene57967:intron |
TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8.4:-5023207 | None:intergenic |
AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 8.4:-5025629 | None:intergenic |
TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 8.4:+5022814 | MS.gene57967:intron |
TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8.4:+5024176 | MS.gene57967:CDS |
AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 8.4:+5022377 | MS.gene57967:CDS |
CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 8.4:-5022167 | None:intergenic |
TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8.4:+5024791 | MS.gene57967:CDS |
CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8.4:+5024399 | MS.gene57967:intron |
ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8.4:+5023895 | MS.gene57967:CDS |
GATCAACAGCAGAGAATACT+TGG | 0.418394 | 8.4:+5025560 | MS.gene57967:CDS |
GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 8.4:+5023491 | MS.gene57967:CDS |
CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8.4:+5025279 | MS.gene57967:CDS |
ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8.4:-5025154 | None:intergenic |
TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8.4:+5024390 | MS.gene57967:intron |
TCTGATAAACATGTCTCAAT+TGG | 0.445162 | 8.4:-5022016 | None:intergenic |
TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8.4:-5023897 | None:intergenic |
CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8.4:+5025307 | MS.gene57967:CDS |
GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8.4:+5024161 | MS.gene57967:CDS |
GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8.4:+5024444 | MS.gene57967:CDS |
ATATATATCATACCTACTAA+TGG | 0.455546 | 8.4:-5025319 | None:intergenic |
TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8.4:+5023847 | MS.gene57967:CDS |
CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8.4:+5024251 | MS.gene57967:CDS |
CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8.4:+5024250 | MS.gene57967:CDS |
TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8.4:-5022665 | None:intergenic |
TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8.4:-5024163 | None:intergenic |
CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8.4:+5023478 | MS.gene57967:CDS |
GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 8.4:+5022384 | MS.gene57967:CDS |
CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8.4:-5025237 | None:intergenic |
TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8.4:-5024435 | None:intergenic |
GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8.4:-5025217 | None:intergenic |
CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8.4:-5024404 | None:intergenic |
TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 8.4:+5022879 | MS.gene57967:CDS |
AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8.4:+5025156 | MS.gene57967:CDS |
TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 8.4:+5024146 | MS.gene57967:intron |
GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 8.4:+5022398 | MS.gene57967:CDS |
AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8.4:+5024009 | MS.gene57967:CDS |
GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8.4:+5022650 | MS.gene57967:CDS |
ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8.4:-5024242 | None:intergenic |
TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 8.4:+5022369 | MS.gene57967:CDS |
TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8.4:+5024215 | MS.gene57967:CDS |
ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8.4:-5024248 | None:intergenic |
GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8.4:-5022655 | None:intergenic |
GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 8.4:+5022203 | MS.gene57967:CDS |
ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8.4:+5024794 | MS.gene57967:CDS |
AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8.4:+5025212 | MS.gene57967:CDS |
AATTTACCATGAATTCATCA+AGG | 0.550011 | 8.4:-5023544 | None:intergenic |
ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8.4:-5023834 | None:intergenic |
ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8.4:-5023896 | None:intergenic |
CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 8.4:+5022902 | MS.gene57967:CDS |
AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 8.4:+5022873 | MS.gene57967:CDS |
GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 8.4:+5022333 | MS.gene57967:intron |
TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 8.4:-5022177 | None:intergenic |
TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8.4:+5023687 | MS.gene57967:CDS |
CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 8.4:+5022885 | MS.gene57967:CDS |
TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8.4:+5025280 | MS.gene57967:CDS |
AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 8.4:+5025596 | MS.gene57967:CDS |
CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 8.4:-5022357 | None:intergenic |
CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8.4:+5024238 | MS.gene57967:CDS |
ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 8.4:-5022183 | None:intergenic |
ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8.4:+5023862 | MS.gene57967:CDS |
GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8.4:+5024778 | MS.gene57967:CDS |
GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8.4:-5023661 | None:intergenic |
TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8.4:+5023460 | MS.gene57967:intron |
CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8.4:-5023484 | None:intergenic |
TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8.4:+5024041 | MS.gene57967:CDS |
TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 8.4:-5023494 | None:intergenic |
GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8.4:+5023848 | MS.gene57967:CDS |
AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8.4:-5024459 | None:intergenic |
CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8.4:+5023851 | MS.gene57967:CDS |
GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8.4:-5024405 | None:intergenic |
CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8.4:+5025211 | MS.gene57967:CDS |
TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8.4:+5023861 | MS.gene57967:CDS |
TATCATACCTACTAATGGTG+CGG | 0.657100 | 8.4:-5025314 | None:intergenic |
AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8.4:+5025220 | MS.gene57967:CDS |
GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8.4:+5023461 | MS.gene57967:intron |
TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 8.4:-5022163 | None:intergenic |
GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 8.4:+5022206 | MS.gene57967:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTTAATGTTCCAAAA+TGG | - | chr8.4:5024548-5024567 | None:intergenic | 15.0% |
!!! | AAAAATTGTACAATTAGTTT+TGG | + | chr8.4:5025349-5025368 | MS.gene57967:intron | 15.0% |
!!! | ATCTTTAAAATTAGAATTTC+AGG | - | chr8.4:5024998-5025017 | None:intergenic | 15.0% |
!!! | CTTTGAACATTAATTAATTT+TGG | + | chr8.4:5023352-5023371 | MS.gene57967:intron | 15.0% |
!!! | GCTTTAAATATTTTTATAGT+TGG | + | chr8.4:5023921-5023940 | MS.gene57967:intron | 15.0% |
!!! | TATTTGTTTTTATGCTAATT+TGG | + | chr8.4:5024128-5024147 | MS.gene57967:intron | 15.0% |
!!! | TGGTTTTTATTCATAAAATA+GGG | + | chr8.4:5025451-5025470 | MS.gene57967:intron | 15.0% |
!!! | TTGGTTTTTATTCATAAAAT+AGG | + | chr8.4:5025450-5025469 | MS.gene57967:intron | 15.0% |
!! | AAAAAAAGGATACATCTAAA+AGG | - | chr8.4:5023245-5023264 | None:intergenic | 20.0% |
!! | ACAAAATTAAGAAATCAAGA+CGG | - | chr8.4:5022969-5022988 | None:intergenic | 20.0% |
!! | ATATATATCATACCTACTAA+TGG | - | chr8.4:5025322-5025341 | None:intergenic | 20.0% |
!! | ATGAATAAAAACCAAACAAT+GGG | - | chr8.4:5025445-5025464 | None:intergenic | 20.0% |
!! | CCAAAAGAATACATAATTAT+TGG | - | chr8.4:5023297-5023316 | None:intergenic | 20.0% |
!! | GTAAAAGGTTTATATCTTTA+TGG | + | chr8.4:5022870-5022889 | MS.gene57967:CDS | 20.0% |
!! | TATGAATAAAAACCAAACAA+TGG | - | chr8.4:5025446-5025465 | None:intergenic | 20.0% |
!! | TATGTAAACTTACTTGTAAT+AGG | - | chr8.4:5023210-5023229 | None:intergenic | 20.0% |
!! | TTCTTTCATTGTGATAATTT+CGG | + | chr8.4:5024605-5024624 | MS.gene57967:intron | 20.0% |
!!! | AATATTTTTATAGTTGGAAG+TGG | + | chr8.4:5023927-5023946 | MS.gene57967:intron | 20.0% |
!!! | ATGGCATTAATTTTATATAG+AGG | - | chr8.4:5025095-5025114 | None:intergenic | 20.0% |
!!! | CCAATAATTATGTATTCTTT+TGG | + | chr8.4:5023294-5023313 | MS.gene57967:intron | 20.0% |
!!! | CTTTTTTTTTTTTACAGACA+CGG | + | chr8.4:5022804-5022823 | MS.gene57967:intron | 20.0% |
!!! | TAAAGATATAAACCTTTTAC+AGG | - | chr8.4:5022870-5022889 | None:intergenic | 20.0% |
!!! | TATTAAAATATGAAGTGCTT+GGG | - | chr8.4:5024891-5024910 | None:intergenic | 20.0% |
!!! | TGGCATTAATTTTATATAGA+GGG | - | chr8.4:5025094-5025113 | None:intergenic | 20.0% |
!!! | TTTTCTTATCTGATTTGTAT+TGG | + | chr8.4:5022296-5022315 | MS.gene57967:intron | 20.0% |
!!! | TTTTTTTTTTTTACAGACAC+GGG | + | chr8.4:5022805-5022824 | MS.gene57967:intron | 20.0% |
! | AAAAATAGTAACAATATCCG+AGG | + | chr8.4:5025200-5025219 | MS.gene57967:CDS | 25.0% |
! | AAAGGTTTATATCTTTATGG+AGG | + | chr8.4:5022873-5022892 | MS.gene57967:CDS | 25.0% |
! | AAATATCCTATATACCTTAC+AGG | - | chr8.4:5022693-5022712 | None:intergenic | 25.0% |
! | AATTTACCATGAATTCATCA+AGG | - | chr8.4:5023547-5023566 | None:intergenic | 25.0% |
! | AGAAGACAAAGTTTAAATGT+GGG | - | chr8.4:5024844-5024863 | None:intergenic | 25.0% |
! | AGATAATGATTTCATTGTTG+TGG | + | chr8.4:5024572-5024591 | MS.gene57967:intron | 25.0% |
! | CATAAAATCATGTTGTATAG+AGG | - | chr8.4:5023743-5023762 | None:intergenic | 25.0% |
! | CGTGTCTGTAAAAAAAAAAA+AGG | - | chr8.4:5022806-5022825 | None:intergenic | 25.0% |
! | GGAAATCTGTAAAATTATGA+AGG | - | chr8.4:5024654-5024673 | None:intergenic | 25.0% |
! | TGAATAAAAACCAAACAATG+GGG | - | chr8.4:5025444-5025463 | None:intergenic | 25.0% |
! | TGATCAGTAATCATTAATCA+TGG | - | chr8.4:5025512-5025531 | None:intergenic | 25.0% |
! | TGTTCAAATCTTGAACTTTA+TGG | + | chr8.4:5022736-5022755 | MS.gene57967:intron | 25.0% |
! | TTATTACTAAGCCCAAAAAT+CGG | - | chr8.4:5024765-5024784 | None:intergenic | 25.0% |
! | TTTATGATCAATTGTGAGTT+TGG | + | chr8.4:5022931-5022950 | MS.gene57967:intron | 25.0% |
! | TTTATGGATCTCTCATATAA+TGG | - | chr8.4:5024675-5024694 | None:intergenic | 25.0% |
!! | CTATTAAAATATGAAGTGCT+TGG | - | chr8.4:5024892-5024911 | None:intergenic | 25.0% |
!! | CTCTATACAACATGATTTTA+TGG | + | chr8.4:5023741-5023760 | MS.gene57967:intron | 25.0% |
!! | TGAAATTATTTTCCCTACTT+TGG | + | chr8.4:5022457-5022476 | MS.gene57967:intron | 25.0% |
!! | TTTTGTATTACATGCTATTG+AGG | + | chr8.4:5022983-5023002 | MS.gene57967:intron | 25.0% |
!!! | ATTTTTTGAAAGAGATCAAG+AGG | - | chr8.4:5025186-5025205 | None:intergenic | 25.0% |
!!! | CATTGTGTAACATTGATTTA+TGG | - | chr8.4:5024691-5024710 | None:intergenic | 25.0% |
!!! | TCTGTTTTTACATAATGTTG+AGG | + | chr8.4:5022761-5022780 | MS.gene57967:intron | 25.0% |
!!! | TTTTTTGAAAGAGATCAAGA+GGG | - | chr8.4:5025185-5025204 | None:intergenic | 25.0% |
!!! | TTTTTTGCTTTCTTTTGTTG+AGG | + | chr8.4:5022577-5022596 | MS.gene57967:intron | 25.0% |
AAAAAGTTTCAGCAGTTGAT+TGG | + | chr8.4:5024209-5024228 | MS.gene57967:CDS | 30.0% | |
AAGAATTGCTAATGGTGAAT+TGG | + | chr8.4:5022377-5022396 | MS.gene57967:CDS | 30.0% | |
AAGCTCTTCAAAAGGAAAAT+AGG | - | chr8.4:5024430-5024449 | None:intergenic | 30.0% | |
AAGCTTATTCCACTTCAATA+AGG | + | chr8.4:5025032-5025051 | MS.gene57967:intron | 30.0% | |
ACATAATCTCATTCATAGCT+AGG | - | chr8.4:5024935-5024954 | None:intergenic | 30.0% | |
ATTATGCCTTGATGAATTCA+TGG | + | chr8.4:5023538-5023557 | MS.gene57967:CDS | 30.0% | |
CAAGTAGGGAATAGAAAAAA+AGG | - | chr8.4:5023259-5023278 | None:intergenic | 30.0% | |
CTTCATTTCTTCAATGTGTT+TGG | + | chr8.4:5023789-5023808 | MS.gene57967:intron | 30.0% | |
GAAAAACCTGTAAGGTATAT+AGG | + | chr8.4:5022684-5022703 | MS.gene57967:intron | 30.0% | |
GAGAAGACAAAGTTTAAATG+TGG | - | chr8.4:5024845-5024864 | None:intergenic | 30.0% | |
TAATTGACAAACAGAGTATG+AGG | + | chr8.4:5023412-5023431 | MS.gene57967:intron | 30.0% | |
TATGAACGAAGAATTGCTAA+TGG | + | chr8.4:5022369-5022388 | MS.gene57967:CDS | 30.0% | |
TATTACTAAGCCCAAAAATC+GGG | - | chr8.4:5024764-5024783 | None:intergenic | 30.0% | |
TCATAAAATAGGGCGAAAAA+TGG | + | chr8.4:5025461-5025480 | MS.gene57967:intron | 30.0% | |
TCTGATAAACATGTCTCAAT+TGG | - | chr8.4:5022019-5022038 | None:intergenic | 30.0% | |
TGTTACAAACAAACAAAGCA+TGG | - | chr8.4:5025114-5025133 | None:intergenic | 30.0% | |
TTATATCTTTATGGAGGAGT+AGG | + | chr8.4:5022879-5022898 | MS.gene57967:CDS | 30.0% | |
TTATGCTAATTTGGACTGTA+GGG | + | chr8.4:5024137-5024156 | MS.gene57967:intron | 30.0% | |
TTTAACCTCATAAGAACACA+TGG | - | chr8.4:5023077-5023096 | None:intergenic | 30.0% | |
TTTATGCTAATTTGGACTGT+AGG | + | chr8.4:5024136-5024155 | MS.gene57967:intron | 30.0% | |
TTTCATACTTTAGCACTTGA+TGG | + | chr8.4:5024735-5024754 | MS.gene57967:CDS | 30.0% | |
! | CAACACTTTTCAAAGTAACA+AGG | - | chr8.4:5022083-5022102 | None:intergenic | 30.0% |
! | CTCTTTTTCTTCCAATTTGA+GGG | - | chr8.4:5023151-5023170 | None:intergenic | 30.0% |
! | TGGATGTAAGTCCTTTTAAA+TGG | + | chr8.4:5024814-5024833 | MS.gene57967:intron | 30.0% |
! | TTTGTGTTGACAATGAACTA+GGG | + | chr8.4:5025280-5025299 | MS.gene57967:CDS | 30.0% |
!! | ATGCTTTGTTTGTTTGTAAC+AGG | + | chr8.4:5025113-5025132 | MS.gene57967:intron | 30.0% |
!! | TTTTCCCTACTTTGGTTTAT+CGG | + | chr8.4:5022465-5022484 | MS.gene57967:intron | 30.0% |
!!! | ATTTTCAAGTCTCAGTGTAA+GGG | + | chr8.4:5023019-5023038 | MS.gene57967:intron | 30.0% |
AATATCCGAGGCTAAACAAA+GGG | + | chr8.4:5025212-5025231 | MS.gene57967:CDS | 35.0% | |
AATCAAGCATACAATAGAGC+TGG | - | chr8.4:5023113-5023132 | None:intergenic | 35.0% | |
AATTCTTCCCTAAGTCAAGT+AGG | - | chr8.4:5023274-5023293 | None:intergenic | 35.0% | |
ACCTTCAATGTTGCAATGAA+GGG | - | chr8.4:5023899-5023918 | None:intergenic | 35.0% | |
AGAGGGTAACTAAAATGCAT+AGG | - | chr8.4:5025077-5025096 | None:intergenic | 35.0% | |
AGATCATGAACAAACTCTAG+AGG | + | chr8.4:5025389-5025408 | MS.gene57967:intron | 35.0% | |
AGATTATTGTGTTCAGCTGA+TGG | + | chr8.4:5025156-5025175 | MS.gene57967:CDS | 35.0% | |
AGCAGAAAAGAAAGAAAGAG+AGG | + | chr8.4:5025596-5025615 | MS.gene57967:CDS | 35.0% | |
ATCAGCTGAACACAATAATC+TGG | - | chr8.4:5025157-5025176 | None:intergenic | 35.0% | |
ATCATGCATGCATTTGTTCA+TGG | + | chr8.4:5022512-5022531 | MS.gene57967:intron | 35.0% | |
ATGTAAATTGCCCCATTGTT+TGG | + | chr8.4:5025431-5025450 | MS.gene57967:intron | 35.0% | |
ATGTGGGCAAACCATTTAAA+AGG | - | chr8.4:5024828-5024847 | None:intergenic | 35.0% | |
ATTACTACTTCCACTTCTTG+GGG | - | chr8.4:5024251-5024270 | None:intergenic | 35.0% | |
ATTCTTCCCTAAGTCAAGTA+GGG | - | chr8.4:5023273-5023292 | None:intergenic | 35.0% | |
ATTTGAACAGACATATCAGC+AGG | - | chr8.4:5022725-5022744 | None:intergenic | 35.0% | |
CAAGAAGTGGAAGTAGTAAT+GGG | + | chr8.4:5024251-5024270 | MS.gene57967:CDS | 35.0% | |
CATTACTACTTCCACTTCTT+GGG | - | chr8.4:5024252-5024271 | None:intergenic | 35.0% | |
CCTCAAATTGGAAGAAAAAG+AGG | + | chr8.4:5023149-5023168 | MS.gene57967:CDS | 35.0% | |
CTTGTGGATGTGGTAATAAA+TGG | - | chr8.4:5022170-5022189 | None:intergenic | 35.0% | |
GAGATCGAGAAAAAATGATG+AGG | + | chr8.4:5025251-5025270 | MS.gene57967:CDS | 35.0% | |
GCGATTAAGTATCAATGCAT+CGG | - | chr8.4:5023664-5023683 | None:intergenic | 35.0% | |
GCTCCAGATAATCTATATGA+GGG | + | chr8.4:5023848-5023867 | MS.gene57967:CDS | 35.0% | |
GTTACAGTAACTAACAGAAG+TGG | + | chr8.4:5022333-5022352 | MS.gene57967:intron | 35.0% | |
TACATCAGTATACGCATACT+AGG | - | chr8.4:5023985-5024004 | None:intergenic | 35.0% | |
TACCTTCAATGTTGCAATGA+AGG | - | chr8.4:5023900-5023919 | None:intergenic | 35.0% | |
TAGTATGCGTATACTGATGT+AGG | + | chr8.4:5023984-5024003 | MS.gene57967:intron | 35.0% | |
TATCATACCTACTAATGGTG+CGG | - | chr8.4:5025317-5025336 | None:intergenic | 35.0% | |
TCTATTCCCTACTTGACTTA+GGG | + | chr8.4:5023264-5023283 | MS.gene57967:intron | 35.0% | |
TGCTCCAGATAATCTATATG+AGG | + | chr8.4:5023847-5023866 | MS.gene57967:CDS | 35.0% | |
TGGATGTGGTAATAAATGGA+CGG | - | chr8.4:5022166-5022185 | None:intergenic | 35.0% | |
TTATGCCATGTGTTCTTATG+AGG | + | chr8.4:5023069-5023088 | MS.gene57967:intron | 35.0% | |
TTCAGACATCTATTCAGCAA+AGG | + | chr8.4:5023687-5023706 | MS.gene57967:CDS | 35.0% | |
TTCTATTCCCTACTTGACTT+AGG | + | chr8.4:5023263-5023282 | MS.gene57967:intron | 35.0% | |
TTGTCACAAAGCTCTTCAAA+AGG | - | chr8.4:5024438-5024457 | None:intergenic | 35.0% | |
TTTACATAATGTTGAGGCTC+TGG | + | chr8.4:5022767-5022786 | MS.gene57967:intron | 35.0% | |
TTTCAGAATTGCGATCCAAT+TGG | - | chr8.4:5022668-5022687 | None:intergenic | 35.0% | |
TTTCCCGATAAACCAAAGTA+GGG | - | chr8.4:5022472-5022491 | None:intergenic | 35.0% | |
! | AGTGTAAGGGGAATATTTTG+AGG | + | chr8.4:5023032-5023051 | MS.gene57967:intron | 35.0% |
! | CACTTCAATAAGGCATCATT+GGG | + | chr8.4:5025042-5025061 | MS.gene57967:intron | 35.0% |
! | CCTCTTTTTCTTCCAATTTG+AGG | - | chr8.4:5023152-5023171 | None:intergenic | 35.0% |
! | CTTTGTGTTGACAATGAACT+AGG | + | chr8.4:5025279-5025298 | MS.gene57967:CDS | 35.0% |
! | GCAATTCTGAAAAACCTGTA+AGG | + | chr8.4:5022676-5022695 | MS.gene57967:CDS | 35.0% |
! | TATTGCTCGTTTTCTTCATC+AGG | + | chr8.4:5024380-5024399 | MS.gene57967:intron | 35.0% |
! | TGCTATTGAGGCAAATTTTG+AGG | + | chr8.4:5022995-5023014 | MS.gene57967:intron | 35.0% |
! | TTGCTTTCTTTTGTTGAGGT+AGG | + | chr8.4:5022581-5022600 | MS.gene57967:intron | 35.0% |
! | TTTCCCTACTTTGGTTTATC+GGG | + | chr8.4:5022466-5022485 | MS.gene57967:intron | 35.0% |
! | TTTTCCCGATAAACCAAAGT+AGG | - | chr8.4:5022473-5022492 | None:intergenic | 35.0% |
!!! | ATTTTTTCTCGATCTCGAAG+AGG | - | chr8.4:5025247-5025266 | None:intergenic | 35.0% |
!!! | CATTTTCAAGTCTCAGTGTA+AGG | + | chr8.4:5023018-5023037 | MS.gene57967:intron | 35.0% |
!!! | TTTTCAAGTCTCAGTGTAAG+GGG | + | chr8.4:5023020-5023039 | MS.gene57967:intron | 35.0% |
!!! | TTTTTTTTTACAGACACGGG+TGG | + | chr8.4:5022808-5022827 | MS.gene57967:intron | 35.0% |
AAATAATCTGCAGCTCCAAG+AGG | - | chr8.4:5024462-5024481 | None:intergenic | 40.0% | |
ACCCTTCATTGCAACATTGA+AGG | + | chr8.4:5023895-5023914 | MS.gene57967:CDS | 40.0% | |
AGATGCATAGCTCATGAGAT+TGG | + | chr8.4:5024009-5024028 | MS.gene57967:CDS | 40.0% | |
ATCAGCTGAGATAGATCTTG+TGG | - | chr8.4:5022186-5022205 | None:intergenic | 40.0% | |
CAATATCCGAGGCTAAACAA+AGG | + | chr8.4:5025211-5025230 | MS.gene57967:CDS | 40.0% | |
CCAAGAAGTGGAAGTAGTAA+TGG | + | chr8.4:5024250-5024269 | MS.gene57967:CDS | 40.0% | |
CCACCCTCATATAGATTATC+TGG | - | chr8.4:5023854-5023873 | None:intergenic | 40.0% | |
CCAGATAATCTATATGAGGG+TGG | + | chr8.4:5023851-5023870 | MS.gene57967:CDS | 40.0% | |
CCATTACTACTTCCACTTCT+TGG | - | chr8.4:5024253-5024272 | None:intergenic | 40.0% | |
CTCATGCAAAATGCAAACGA+GGG | + | chr8.4:5024519-5024538 | MS.gene57967:intron | 40.0% | |
GATCAACAGCAGAGAATACT+TGG | + | chr8.4:5025560-5025579 | MS.gene57967:CDS | 40.0% | |
GATGCTGTGAAGATCACAAA+TGG | + | chr8.4:5022203-5022222 | MS.gene57967:CDS | 40.0% | |
GCTAATGGTGAATTGGTAGA+TGG | + | chr8.4:5022384-5022403 | MS.gene57967:CDS | 40.0% | |
GTAATAAAGCAGCTGCACAT+AGG | + | chr8.4:5024778-5024797 | MS.gene57967:CDS | 40.0% | |
GTTTATCGGGAAAATGTTGC+TGG | + | chr8.4:5022479-5022498 | MS.gene57967:intron | 40.0% | |
TCTCATGCAAAATGCAAACG+AGG | + | chr8.4:5024518-5024537 | MS.gene57967:intron | 40.0% | |
TGACTACCGCAAAATGACTT+CGG | + | chr8.4:5024041-5024060 | MS.gene57967:CDS | 40.0% | |
TGAGATAGATCTTGTGGATG+TGG | - | chr8.4:5022180-5022199 | None:intergenic | 40.0% | |
TGCCAACCAAATAGAATCCT+TGG | - | chr8.4:5024166-5024185 | None:intergenic | 40.0% | |
TGTCACAGCTTGAGATTTGT+TGG | + | chr8.4:5023615-5023634 | MS.gene57967:intron | 40.0% | |
TTTCAGCAGTTGATTGGAGA+AGG | + | chr8.4:5024215-5024234 | MS.gene57967:CDS | 40.0% | |
! | CCAATGATGCCTTATTGAAG+TGG | - | chr8.4:5025044-5025063 | None:intergenic | 40.0% |
! | CCACTTCAATAAGGCATCAT+TGG | + | chr8.4:5025041-5025060 | MS.gene57967:intron | 40.0% |
! | CTTGGAGCTGCAGATTATTT+TGG | + | chr8.4:5024462-5024481 | MS.gene57967:CDS | 40.0% |
! | TCAATAAGGCATCATTGGGA+CGG | + | chr8.4:5025046-5025065 | MS.gene57967:intron | 40.0% |
! | TGAACAAACTCTAGAGGTTG+AGG | + | chr8.4:5025395-5025414 | MS.gene57967:intron | 40.0% |
! | TGCACATAGGTTTGTCACTT+TGG | + | chr8.4:5024791-5024810 | MS.gene57967:CDS | 40.0% |
!! | ACATAGGTTTGTCACTTTGG+TGG | + | chr8.4:5024794-5024813 | MS.gene57967:CDS | 40.0% |
!! | GAGATTTGTTGGTCTTCTGT+AGG | + | chr8.4:5023626-5023645 | MS.gene57967:intron | 40.0% |
!! | GTCATACCGAAGTCATTTTG+CGG | - | chr8.4:5024050-5024069 | None:intergenic | 40.0% |
!! | TTGATGGCATCCCGATTTTT+GGG | + | chr8.4:5024751-5024770 | MS.gene57967:CDS | 40.0% |
!!! | GCTTGATTTTTTTCATCCCC+AGG | + | chr8.4:5023125-5023144 | MS.gene57967:intron | 40.0% |
CAAAAGACCGCACCATTAGT+AGG | + | chr8.4:5025307-5025326 | MS.gene57967:CDS | 45.0% | |
CACTGGCAAAACTATGCTGA+TGG | + | chr8.4:5022902-5022921 | MS.gene57967:CDS | 45.0% | |
CCTTCGCATTCACCTGTAAA+AGG | + | chr8.4:5022855-5022874 | MS.gene57967:CDS | 45.0% | |
CTTCGTTCATACTCGACAAG+AGG | - | chr8.4:5022360-5022379 | None:intergenic | 45.0% | |
GCGATCCAATTGGCATTCAT+CGG | - | chr8.4:5022658-5022677 | None:intergenic | 45.0% | |
GCTGTGAAGATCACAAATGG+AGG | + | chr8.4:5022206-5022225 | MS.gene57967:CDS | 45.0% | |
GGCCAAGGATTCTATTTGGT+TGG | + | chr8.4:5024161-5024180 | MS.gene57967:CDS | 45.0% | |
GGTAGATGGTGATAGTTGTC+AGG | + | chr8.4:5022398-5022417 | MS.gene57967:CDS | 45.0% | |
TGCTAATTTGGACTGTAGGG+TGG | + | chr8.4:5024140-5024159 | MS.gene57967:intron | 45.0% | |
TTCTTCCAATTTGAGGGCCT+GGG | - | chr8.4:5023145-5023164 | None:intergenic | 45.0% | |
TTGGTTGGCAGTGATTCATC+TGG | + | chr8.4:5024176-5024195 | MS.gene57967:CDS | 45.0% | |
TTTCTTCATCAGGTCCCGTT+GGG | + | chr8.4:5024390-5024409 | MS.gene57967:intron | 45.0% | |
TTTCTTCCAATTTGAGGGCC+TGG | - | chr8.4:5023146-5023165 | None:intergenic | 45.0% | |
! | ATCTGGAGCACGATTTGAAG+TGG | - | chr8.4:5023837-5023856 | None:intergenic | 45.0% |
! | CCTTTTACAGGTGAATGCGA+AGG | - | chr8.4:5022858-5022877 | None:intergenic | 45.0% |
! | GAGCTTTGTGACAAACCTCT+TGG | + | chr8.4:5024444-5024463 | MS.gene57967:CDS | 45.0% |
! | GCAAACGAGGGTTTCCATTT+TGG | + | chr8.4:5024531-5024550 | MS.gene57967:intron | 45.0% |
! | GTGTCCTTGTAGAAGCACAA+GGG | + | chr8.4:5023461-5023480 | MS.gene57967:intron | 45.0% |
! | TGTGTCCTTGTAGAAGCACA+AGG | + | chr8.4:5023460-5023479 | MS.gene57967:intron | 45.0% |
! | TTTTCTTCATCAGGTCCCGT+TGG | + | chr8.4:5024389-5024408 | MS.gene57967:intron | 45.0% |
!! | CTTGATGGCATCCCGATTTT+TGG | + | chr8.4:5024750-5024769 | MS.gene57967:CDS | 45.0% |
ACTTCCACTTCTTGGGGAGT+AGG | - | chr8.4:5024245-5024264 | None:intergenic | 50.0% | |
CAACATCCAGTGGATCTGAC+AGG | - | chr8.4:5023487-5023506 | None:intergenic | 50.0% | |
CACATCCATTAGCTCCCAAC+GGG | - | chr8.4:5024407-5024426 | None:intergenic | 50.0% | |
CTTTATGGAGGAGTAGGCAC+TGG | + | chr8.4:5022885-5022904 | MS.gene57967:CDS | 50.0% | |
GATCCACTGGATGTTGTTGC+AGG | + | chr8.4:5023491-5023510 | MS.gene57967:CDS | 50.0% | |
GCACATCCATTAGCTCCCAA+CGG | - | chr8.4:5024408-5024427 | None:intergenic | 50.0% | |
GCATGCCGATGAATGCCAAT+TGG | + | chr8.4:5022650-5022669 | MS.gene57967:CDS | 50.0% | |
GGGTGGCCAAGGATTCTATT+TGG | + | chr8.4:5024157-5024176 | MS.gene57967:intron | 50.0% | |
TCTCCTGCAACAACATCCAG+TGG | - | chr8.4:5023497-5023516 | None:intergenic | 50.0% | |
TCTTCCAATTTGAGGGCCTG+GGG | - | chr8.4:5023144-5023163 | None:intergenic | 50.0% | |
TTTACAGACACGGGTGGCTT+TGG | + | chr8.4:5022814-5022833 | MS.gene57967:intron | 50.0% | |
!! | ATATGAGGGTGGACTGCAGA+GGG | + | chr8.4:5023862-5023881 | MS.gene57967:CDS | 50.0% |
!! | TATATGAGGGTGGACTGCAG+AGG | + | chr8.4:5023861-5023880 | MS.gene57967:CDS | 50.0% |
CACACCTACTCCCCAAGAAG+TGG | + | chr8.4:5024238-5024257 | MS.gene57967:CDS | 55.0% | |
CAGGCCCTTGTGCTTCTACA+AGG | - | chr8.4:5023468-5023487 | None:intergenic | 55.0% | |
CTCGATCTCGAAGAGGTCCT+GGG | - | chr8.4:5025240-5025259 | None:intergenic | 55.0% | |
TCATCCCCAGGCCCTCAAAT+TGG | + | chr8.4:5023137-5023156 | MS.gene57967:intron | 55.0% | |
TCTCGATCTCGAAGAGGTCC+TGG | - | chr8.4:5025241-5025260 | None:intergenic | 55.0% | |
TTTGGACTGTAGGGTGGCCA+AGG | + | chr8.4:5024146-5024165 | MS.gene57967:intron | 55.0% | |
! | GGGTGCCCTTTGTTTAGCCT+CGG | - | chr8.4:5025220-5025239 | None:intergenic | 55.0% |
!! | AGGCTAAACAAAGGGCACCC+AGG | + | chr8.4:5025220-5025239 | MS.gene57967:CDS | 55.0% |
CAAGGGCCTGTCAGATCCAC+TGG | + | chr8.4:5023478-5023497 | MS.gene57967:CDS | 60.0% | |
CAGGTCCCGTTGGGAGCTAA+TGG | + | chr8.4:5024399-5024418 | MS.gene57967:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 5021990 | 5025641 | 5021990 | ID=MS.gene57967 |
chr8.4 | mRNA | 5021990 | 5025641 | 5021990 | ID=MS.gene57967.t1;Parent=MS.gene57967 |
chr8.4 | exon | 5021990 | 5022227 | 5021990 | ID=MS.gene57967.t1.exon1;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5021990 | 5022227 | 5021990 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5022340 | 5022419 | 5022340 | ID=MS.gene57967.t1.exon2;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5022340 | 5022419 | 5022340 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5022603 | 5022697 | 5022603 | ID=MS.gene57967.t1.exon3;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5022603 | 5022697 | 5022603 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5022821 | 5022943 | 5022821 | ID=MS.gene57967.t1.exon4;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5022821 | 5022943 | 5022821 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5023147 | 5023216 | 5023147 | ID=MS.gene57967.t1.exon5;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5023147 | 5023216 | 5023147 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5023473 | 5023559 | 5023473 | ID=MS.gene57967.t1.exon6;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5023473 | 5023559 | 5023473 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5023648 | 5023713 | 5023648 | ID=MS.gene57967.t1.exon7;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5023648 | 5023713 | 5023648 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5023824 | 5023916 | 5023824 | ID=MS.gene57967.t1.exon8;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5023824 | 5023916 | 5023824 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5024006 | 5024062 | 5024006 | ID=MS.gene57967.t1.exon9;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5024006 | 5024062 | 5024006 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5024158 | 5024286 | 5024158 | ID=MS.gene57967.t1.exon10;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5024158 | 5024286 | 5024158 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5024402 | 5024492 | 5024402 | ID=MS.gene57967.t1.exon11;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5024402 | 5024492 | 5024402 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5024730 | 5024818 | 5024730 | ID=MS.gene57967.t1.exon12;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5024730 | 5024818 | 5024730 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5025135 | 5025328 | 5025135 | ID=MS.gene57967.t1.exon13;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5025135 | 5025328 | 5025135 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
chr8.4 | exon | 5025551 | 5025641 | 5025551 | ID=MS.gene57967.t1.exon14;Parent=MS.gene57967.t1 |
chr8.4 | CDS | 5025551 | 5025641 | 5025551 | ID=cds.MS.gene57967.t1;Parent=MS.gene57967.t1 |
Gene Sequence |
Protein sequence |