Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035633.t1 | XP_013458571.1 | 98.6 | 500 | 7 | 0 | 1 | 500 | 1 | 500 | 5.80E-287 | 996.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035633.t1 | Q3V384 | 40.1 | 414 | 214 | 10 | 85 | 480 | 74 | 471 | 9.0e-71 | 269.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035633.t1 | A0A072USG5 | 98.6 | 500 | 7 | 0 | 1 | 500 | 1 | 500 | 4.2e-287 | 996.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene57967 | MS.gene035633 | PPI |
MS.gene035633 | MS.gene012487 | PPI |
MS.gene012485 | MS.gene035633 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035633.t1 | MTR_4g129950 | 98.600 | 500 | 7 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1026 |
MS.gene035633.t1 | MTR_4g129950 | 97.375 | 381 | 10 | 0 | 1 | 381 | 1 | 381 | 0.0 | 780 |
MS.gene035633.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 83 | 417 | 1.48e-45 | 167 |
MS.gene035633.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 60 | 394 | 1.85e-45 | 166 |
MS.gene035633.t1 | MTR_1g012370 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 4.55e-45 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035633.t1 | AT4G30490 | 72.685 | 432 | 107 | 3 | 67 | 487 | 63 | 494 | 0.0 | 663 |
MS.gene035633.t1 | AT4G28070 | 73.923 | 418 | 105 | 2 | 77 | 490 | 53 | 470 | 0.0 | 649 |
MS.gene035633.t1 | AT4G28070 | 71.770 | 418 | 105 | 3 | 77 | 490 | 53 | 461 | 0.0 | 623 |
MS.gene035633.t1 | AT2G25530 | 30.732 | 410 | 209 | 12 | 148 | 482 | 233 | 642 | 9.44e-46 | 169 |
MS.gene035633.t1 | AT2G25530 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.25e-37 | 145 |
Find 90 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 8.1:+3184487 | MS.gene035633:CDS |
CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8.1:+3186175 | MS.gene035633:CDS |
CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8.1:-3185962 | None:intergenic |
CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 8.1:+3184472 | MS.gene035633:CDS |
CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8.1:-3185963 | None:intergenic |
CCACCCTCATATAGATTATC+TGG | 0.285514 | 8.1:-3185564 | None:intergenic |
AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8.1:-3186140 | None:intergenic |
TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8.1:+3186448 | MS.gene035633:CDS |
ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8.1:+3185251 | MS.gene035633:CDS |
AAATATCCTATATACCTTAC+AGG | 0.319411 | 8.1:-3184306 | None:intergenic |
TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8.1:-3186973 | None:intergenic |
TTTACAGACATGGGTGGCTT+TGG | 0.327091 | 8.1:+3184431 | MS.gene035633:intron |
TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8.1:+3184754 | MS.gene035633:intron |
GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8.1:+3185870 | MS.gene035633:intron |
TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8.1:-3184824 | None:intergenic |
AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 8.1:-3187364 | None:intergenic |
TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8.1:+3185889 | MS.gene035633:CDS |
AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 8.1:+3183993 | MS.gene035633:CDS |
CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 8.1:-3183783 | None:intergenic |
TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8.1:+3186504 | MS.gene035633:CDS |
CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8.1:+3186112 | MS.gene035633:intron |
ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8.1:+3185608 | MS.gene035633:CDS |
GATCAACAGCAGAGAATACT+TGG | 0.418394 | 8.1:+3187295 | MS.gene035633:CDS |
GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 8.1:+3185204 | MS.gene035633:CDS |
CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8.1:+3187014 | MS.gene035633:CDS |
ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8.1:-3186889 | None:intergenic |
TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8.1:+3186103 | MS.gene035633:intron |
TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8.1:-3185610 | None:intergenic |
CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8.1:+3187042 | MS.gene035633:CDS |
GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8.1:+3185874 | MS.gene035633:CDS |
GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8.1:+3186157 | MS.gene035633:CDS |
ATATATATCATACCTACTAA+TGG | 0.455546 | 8.1:-3187054 | None:intergenic |
TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8.1:+3185560 | MS.gene035633:CDS |
TCTGATAAACACGTCTCAAT+TGG | 0.461827 | 8.1:-3183632 | None:intergenic |
CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8.1:+3185964 | MS.gene035633:CDS |
CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8.1:+3185963 | MS.gene035633:CDS |
TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8.1:-3184281 | None:intergenic |
TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8.1:-3185876 | None:intergenic |
CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8.1:+3185191 | MS.gene035633:CDS |
GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 8.1:+3184000 | MS.gene035633:CDS |
CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8.1:-3186972 | None:intergenic |
TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8.1:-3186148 | None:intergenic |
GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8.1:-3186952 | None:intergenic |
CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8.1:-3186117 | None:intergenic |
TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 8.1:+3184496 | MS.gene035633:CDS |
AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8.1:+3186891 | MS.gene035633:CDS |
TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 8.1:+3185859 | MS.gene035633:intron |
GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 8.1:+3184014 | MS.gene035633:CDS |
AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8.1:+3185722 | MS.gene035633:CDS |
GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8.1:+3184266 | MS.gene035633:CDS |
ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8.1:-3185955 | None:intergenic |
TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 8.1:+3183985 | MS.gene035633:CDS |
TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8.1:+3185928 | MS.gene035633:CDS |
ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8.1:-3185961 | None:intergenic |
GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8.1:-3184271 | None:intergenic |
GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 8.1:+3183819 | MS.gene035633:CDS |
ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8.1:+3186507 | MS.gene035633:CDS |
AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8.1:+3186947 | MS.gene035633:CDS |
AATTTACCATGAATTCATCA+AGG | 0.550011 | 8.1:-3185257 | None:intergenic |
ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8.1:-3185547 | None:intergenic |
ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8.1:-3185609 | None:intergenic |
CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 8.1:+3184519 | MS.gene035633:CDS |
AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 8.1:+3184490 | MS.gene035633:CDS |
GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 8.1:+3183949 | MS.gene035633:intron |
TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 8.1:-3183793 | None:intergenic |
TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8.1:+3185400 | MS.gene035633:CDS |
CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 8.1:+3184502 | MS.gene035633:CDS |
TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8.1:+3187015 | MS.gene035633:CDS |
AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 8.1:+3187331 | MS.gene035633:CDS |
CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 8.1:-3183973 | None:intergenic |
CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8.1:+3185951 | MS.gene035633:CDS |
ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 8.1:-3183799 | None:intergenic |
ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8.1:+3185575 | MS.gene035633:CDS |
GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8.1:+3186491 | MS.gene035633:CDS |
GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8.1:-3185374 | None:intergenic |
TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8.1:+3185173 | MS.gene035633:intron |
CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8.1:-3185197 | None:intergenic |
TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8.1:+3185754 | MS.gene035633:CDS |
TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 8.1:-3185207 | None:intergenic |
GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8.1:+3185561 | MS.gene035633:CDS |
AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8.1:-3186172 | None:intergenic |
CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8.1:+3185564 | MS.gene035633:CDS |
GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8.1:-3186118 | None:intergenic |
CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8.1:+3186946 | MS.gene035633:CDS |
TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8.1:+3185574 | MS.gene035633:CDS |
TATCATACCTACTAATGGTG+CGG | 0.657100 | 8.1:-3187049 | None:intergenic |
AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8.1:+3186955 | MS.gene035633:CDS |
GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8.1:+3185174 | MS.gene035633:intron |
TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 8.1:-3183779 | None:intergenic |
GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 8.1:+3183822 | MS.gene035633:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTCTGTAAAAAAAAAAAA+AGG | - | chr8.1:3184422-3184441 | None:intergenic | 15.0% |
!! | ATTAATTTAATGTTCCAAAA+TGG | - | chr8.1:3186261-3186280 | None:intergenic | 15.0% |
!!! | AAAAATTGTATCATTAGTTT+TGG | + | chr8.1:3187084-3187103 | MS.gene035633:intron | 15.0% |
!!! | ATCTTTAAAATTAGAATTTC+AGG | - | chr8.1:3186711-3186730 | None:intergenic | 15.0% |
!!! | CTTTGAACATTAATTAATTT+TGG | + | chr8.1:3185065-3185084 | MS.gene035633:intron | 15.0% |
!!! | GCTTTAAATATTTTTATAGT+TGG | + | chr8.1:3185634-3185653 | MS.gene035633:intron | 15.0% |
!!! | TATTTGTTTTTATGCTAATT+TGG | + | chr8.1:3185841-3185860 | MS.gene035633:intron | 15.0% |
!!! | TGGTTTTTATTCATAAAATA+GGG | + | chr8.1:3187186-3187205 | MS.gene035633:intron | 15.0% |
!!! | TTGGTTTTTATTCATAAAAT+AGG | + | chr8.1:3187185-3187204 | MS.gene035633:intron | 15.0% |
!!! | TTTTTTTTTTTTACAGACAT+GGG | + | chr8.1:3184422-3184441 | MS.gene035633:intron | 15.0% |
!!! | TTTTTTTTTTTTTACAGACA+TGG | + | chr8.1:3184421-3184440 | MS.gene035633:intron | 15.0% |
!! | AAAAAAAGGATACATCTAAA+AGG | - | chr8.1:3184862-3184881 | None:intergenic | 20.0% |
!! | ACAAAATTAAGAAATCAAGA+CGG | - | chr8.1:3184586-3184605 | None:intergenic | 20.0% |
!! | ATATATATCATACCTACTAA+TGG | - | chr8.1:3187057-3187076 | None:intergenic | 20.0% |
!! | ATGAATAAAAACCAAACAAT+GGG | - | chr8.1:3187180-3187199 | None:intergenic | 20.0% |
!! | CCAAAAGAATACATAATTAT+TGG | - | chr8.1:3184914-3184933 | None:intergenic | 20.0% |
!! | GTAAAAGGTTTATATCTTTA+TGG | + | chr8.1:3184487-3184506 | MS.gene035633:CDS | 20.0% |
!! | TATGAATAAAAACCAAACAA+TGG | - | chr8.1:3187181-3187200 | None:intergenic | 20.0% |
!! | TATGTAAACTTACTTGTAAT+AGG | - | chr8.1:3184827-3184846 | None:intergenic | 20.0% |
!! | TTCTTTCATTGTGATAATTT+CGG | + | chr8.1:3186318-3186337 | MS.gene035633:intron | 20.0% |
!!! | AATATTTTTATAGTTGGAAG+TGG | + | chr8.1:3185640-3185659 | MS.gene035633:intron | 20.0% |
!!! | CCAATAATTATGTATTCTTT+TGG | + | chr8.1:3184911-3184930 | MS.gene035633:intron | 20.0% |
!!! | TAAAATTATTTTCCCTACTT+TGG | + | chr8.1:3184073-3184092 | MS.gene035633:intron | 20.0% |
!!! | TAAAGATATAAACCTTTTAC+AGG | - | chr8.1:3184487-3184506 | None:intergenic | 20.0% |
!!! | TATTAAAATATGAAGTGCTT+GGG | - | chr8.1:3186604-3186623 | None:intergenic | 20.0% |
!!! | TTTTCTTATCTGATTTGTAT+TGG | + | chr8.1:3183912-3183931 | MS.gene035633:intron | 20.0% |
! | AAAAATAGTAACAATATCCG+AGG | + | chr8.1:3186935-3186954 | MS.gene035633:CDS | 25.0% |
! | AAAGGTTTATATCTTTATGG+AGG | + | chr8.1:3184490-3184509 | MS.gene035633:CDS | 25.0% |
! | AAATATCCTATATACCTTAC+AGG | - | chr8.1:3184309-3184328 | None:intergenic | 25.0% |
! | AATTTACCATGAATTCATCA+AGG | - | chr8.1:3185260-3185279 | None:intergenic | 25.0% |
! | AGAAGACAAAGTTTAAATGT+GGG | - | chr8.1:3186557-3186576 | None:intergenic | 25.0% |
! | AGATAATGATTTCATTGTTG+TGG | + | chr8.1:3186285-3186304 | MS.gene035633:intron | 25.0% |
! | CATAAAATCATGTTGTATAG+AGG | - | chr8.1:3185456-3185475 | None:intergenic | 25.0% |
! | GGAAATCTGTAAAATTATGA+AGG | - | chr8.1:3186367-3186386 | None:intergenic | 25.0% |
! | TGAATAAAAACCAAACAATG+GGG | - | chr8.1:3187179-3187198 | None:intergenic | 25.0% |
! | TGATCAGTAATCATTAATCA+TGG | - | chr8.1:3187247-3187266 | None:intergenic | 25.0% |
! | TGTTCAAATCTTGAACTTTA+TGG | + | chr8.1:3184352-3184371 | MS.gene035633:intron | 25.0% |
! | TTATTACTAAGCCCAAAAAT+CGG | - | chr8.1:3186478-3186497 | None:intergenic | 25.0% |
! | TTTATGATCAATTGTGAGTT+TGG | + | chr8.1:3184548-3184567 | MS.gene035633:intron | 25.0% |
! | TTTATGGATCTCTCATATAA+TGG | - | chr8.1:3186388-3186407 | None:intergenic | 25.0% |
!! | CTATTAAAATATGAAGTGCT+TGG | - | chr8.1:3186605-3186624 | None:intergenic | 25.0% |
!! | CTCTATACAACATGATTTTA+TGG | + | chr8.1:3185454-3185473 | MS.gene035633:intron | 25.0% |
!! | TTTTGTATTACATGCTATTG+AGG | + | chr8.1:3184600-3184619 | MS.gene035633:intron | 25.0% |
!!! | ATTTTTTGAAAGAGATCAAG+AGG | - | chr8.1:3186921-3186940 | None:intergenic | 25.0% |
!!! | CATTGTGTAACATTGATTTA+TGG | - | chr8.1:3186404-3186423 | None:intergenic | 25.0% |
!!! | TTTTTTGAAAGAGATCAAGA+GGG | - | chr8.1:3186920-3186939 | None:intergenic | 25.0% |
!!! | TTTTTTGCTTTCTTTTGTTG+AGG | + | chr8.1:3184193-3184212 | MS.gene035633:intron | 25.0% |
AAAAAGTTTCAGCAGTTGAT+TGG | + | chr8.1:3185922-3185941 | MS.gene035633:CDS | 30.0% | |
AAGAATTGCTAATGGTGAAT+TGG | + | chr8.1:3183993-3184012 | MS.gene035633:CDS | 30.0% | |
AAGCTCTTCAAAAGGAAAAT+AGG | - | chr8.1:3186143-3186162 | None:intergenic | 30.0% | |
AAGCTTATTCCACTTCAATA+AGG | + | chr8.1:3186745-3186764 | MS.gene035633:intron | 30.0% | |
ACATAATCTCATTCATAGCT+AGG | - | chr8.1:3186648-3186667 | None:intergenic | 30.0% | |
ATTATGCCTTGATGAATTCA+TGG | + | chr8.1:3185251-3185270 | MS.gene035633:CDS | 30.0% | |
CAAGTAGGGAATAGAAAAAA+AGG | - | chr8.1:3184876-3184895 | None:intergenic | 30.0% | |
CTTCATTTCTTCAATGTGTT+TGG | + | chr8.1:3185502-3185521 | MS.gene035633:intron | 30.0% | |
GAAAAACCTGTAAGGTATAT+AGG | + | chr8.1:3184300-3184319 | MS.gene035633:intron | 30.0% | |
GAGAAGACAAAGTTTAAATG+TGG | - | chr8.1:3186558-3186577 | None:intergenic | 30.0% | |
GCAGGAAATAGAAATATAGA+GGG | - | chr8.1:3186807-3186826 | None:intergenic | 30.0% | |
TAATTGACAAACAGAGTATG+AGG | + | chr8.1:3185125-3185144 | MS.gene035633:intron | 30.0% | |
TACATCAGTATACACATACT+AGG | - | chr8.1:3185698-3185717 | None:intergenic | 30.0% | |
TAGTATGTGTATACTGATGT+AGG | + | chr8.1:3185697-3185716 | MS.gene035633:intron | 30.0% | |
TATGAACGAAGAATTGCTAA+TGG | + | chr8.1:3183985-3184004 | MS.gene035633:CDS | 30.0% | |
TATTACTAAGCCCAAAAATC+GGG | - | chr8.1:3186477-3186496 | None:intergenic | 30.0% | |
TCATAAAATAGGGCGAAAAA+TGG | + | chr8.1:3187196-3187215 | MS.gene035633:intron | 30.0% | |
TGTTACAAACAAACAAAGCA+TGG | - | chr8.1:3186849-3186868 | None:intergenic | 30.0% | |
TTATATCTTTATGGAGGAGT+AGG | + | chr8.1:3184496-3184515 | MS.gene035633:CDS | 30.0% | |
TTATGCTAATTTGGACTGTA+GGG | + | chr8.1:3185850-3185869 | MS.gene035633:intron | 30.0% | |
TTTAACCTCATAAGAACACA+TGG | - | chr8.1:3184694-3184713 | None:intergenic | 30.0% | |
TTTATGCTAATTTGGACTGT+AGG | + | chr8.1:3185849-3185868 | MS.gene035633:intron | 30.0% | |
TTTCATACTTTAGCACTTGA+TGG | + | chr8.1:3186448-3186467 | MS.gene035633:CDS | 30.0% | |
! | CAACACTTTTCAAAGTAACA+AGG | - | chr8.1:3183699-3183718 | None:intergenic | 30.0% |
! | CTCTATATTTCTATTTCCTG+CGG | + | chr8.1:3186806-3186825 | MS.gene035633:intron | 30.0% |
! | CTCTTTTTCTTCCAATTTGA+GGG | - | chr8.1:3184768-3184787 | None:intergenic | 30.0% |
! | TGGATGTAAGTCCTTTTAAA+TGG | + | chr8.1:3186527-3186546 | MS.gene035633:intron | 30.0% |
! | TTTGTGTTGACAATGAACTA+GGG | + | chr8.1:3187015-3187034 | MS.gene035633:CDS | 30.0% |
!! | ATGCTTTGTTTGTTTGTAAC+AGG | + | chr8.1:3186848-3186867 | MS.gene035633:intron | 30.0% |
!! | TTTTCCCTACTTTGGTTTAT+CGG | + | chr8.1:3184081-3184100 | MS.gene035633:intron | 30.0% |
!!! | ATTTTCAAGTCTCAGTGTAA+GGG | + | chr8.1:3184636-3184655 | MS.gene035633:intron | 30.0% |
!!! | TTTTTTTTTACAGACATGGG+TGG | + | chr8.1:3184425-3184444 | MS.gene035633:intron | 30.0% |
AATATCCGAGGCTAAACAAA+GGG | + | chr8.1:3186947-3186966 | MS.gene035633:CDS | 35.0% | |
AATTCTTCCCTAAGTCAAGT+AGG | - | chr8.1:3184891-3184910 | None:intergenic | 35.0% | |
ACCTTCAATGTTGCAATGAA+GGG | - | chr8.1:3185612-3185631 | None:intergenic | 35.0% | |
AGAGGGTAACTAAAATGCAT+AGG | - | chr8.1:3186790-3186809 | None:intergenic | 35.0% | |
AGATCATGAACAAACTCTAG+AGG | + | chr8.1:3187124-3187143 | MS.gene035633:intron | 35.0% | |
AGATTATTGTGTTCAGCTGA+TGG | + | chr8.1:3186891-3186910 | MS.gene035633:CDS | 35.0% | |
AGCAGAAAAGAAAGAAAGAG+AGG | + | chr8.1:3187331-3187350 | MS.gene035633:CDS | 35.0% | |
ATCAGCTGAACACAATAATC+TGG | - | chr8.1:3186892-3186911 | None:intergenic | 35.0% | |
ATCATGCATGCATTTGTTCA+TGG | + | chr8.1:3184128-3184147 | MS.gene035633:intron | 35.0% | |
ATGTAAATTGCCCCATTGTT+TGG | + | chr8.1:3187166-3187185 | MS.gene035633:intron | 35.0% | |
ATGTGGGCAAACCATTTAAA+AGG | - | chr8.1:3186541-3186560 | None:intergenic | 35.0% | |
ATTACTACTTCCACTTCTTG+GGG | - | chr8.1:3185964-3185983 | None:intergenic | 35.0% | |
ATTCTTCCCTAAGTCAAGTA+GGG | - | chr8.1:3184890-3184909 | None:intergenic | 35.0% | |
ATTTGAACAGACATATCAGC+AGG | - | chr8.1:3184341-3184360 | None:intergenic | 35.0% | |
CAAGAAGTGGAAGTAGTAAT+GGG | + | chr8.1:3185964-3185983 | MS.gene035633:CDS | 35.0% | |
CATTACTACTTCCACTTCTT+GGG | - | chr8.1:3185965-3185984 | None:intergenic | 35.0% | |
CCTCAAATTGGAAGAAAAAG+AGG | + | chr8.1:3184766-3184785 | MS.gene035633:CDS | 35.0% | |
CGCAGGAAATAGAAATATAG+AGG | - | chr8.1:3186808-3186827 | None:intergenic | 35.0% | |
CTTGTGGATGTGGTAATAAA+TGG | - | chr8.1:3183786-3183805 | None:intergenic | 35.0% | |
GAGATCGAGAAAAAATGATG+AGG | + | chr8.1:3186986-3187005 | MS.gene035633:CDS | 35.0% | |
GCGATTAAGTATCAATGCAT+CGG | - | chr8.1:3185377-3185396 | None:intergenic | 35.0% | |
GCTCCAGATAATCTATATGA+GGG | + | chr8.1:3185561-3185580 | MS.gene035633:CDS | 35.0% | |
GTTACAGTAACTAACAGAAG+TGG | + | chr8.1:3183949-3183968 | MS.gene035633:intron | 35.0% | |
TACCTTCAATGTTGCAATGA+AGG | - | chr8.1:3185613-3185632 | None:intergenic | 35.0% | |
TATCATACCTACTAATGGTG+CGG | - | chr8.1:3187052-3187071 | None:intergenic | 35.0% | |
TCTATTCCCTACTTGACTTA+GGG | + | chr8.1:3184881-3184900 | MS.gene035633:intron | 35.0% | |
TCTGATAAACACGTCTCAAT+TGG | - | chr8.1:3183635-3183654 | None:intergenic | 35.0% | |
TGCTCCAGATAATCTATATG+AGG | + | chr8.1:3185560-3185579 | MS.gene035633:CDS | 35.0% | |
TGGATGTGGTAATAAATGGA+CGG | - | chr8.1:3183782-3183801 | None:intergenic | 35.0% | |
TTATGCCATGTGTTCTTATG+AGG | + | chr8.1:3184686-3184705 | MS.gene035633:intron | 35.0% | |
TTCAGACATCTATTCAGCAA+AGG | + | chr8.1:3185400-3185419 | MS.gene035633:CDS | 35.0% | |
TTCTATTCCCTACTTGACTT+AGG | + | chr8.1:3184880-3184899 | MS.gene035633:intron | 35.0% | |
TTGTCACAAAGCTCTTCAAA+AGG | - | chr8.1:3186151-3186170 | None:intergenic | 35.0% | |
TTTCAGAATTGCGATCCAAT+TGG | - | chr8.1:3184284-3184303 | None:intergenic | 35.0% | |
TTTCCCGATAAACCAAAGTA+GGG | - | chr8.1:3184088-3184107 | None:intergenic | 35.0% | |
! | AGTGTAAGGGGAATATTTTG+AGG | + | chr8.1:3184649-3184668 | MS.gene035633:intron | 35.0% |
! | ATTAATTTTACTCTCACCGC+AGG | - | chr8.1:3186825-3186844 | None:intergenic | 35.0% |
! | CACTTCAATAAGGCATCATT+GGG | + | chr8.1:3186755-3186774 | MS.gene035633:intron | 35.0% |
! | CCTCTTTTTCTTCCAATTTG+AGG | - | chr8.1:3184769-3184788 | None:intergenic | 35.0% |
! | CTTTGTGTTGACAATGAACT+AGG | + | chr8.1:3187014-3187033 | MS.gene035633:CDS | 35.0% |
! | GCAATTCTGAAAAACCTGTA+AGG | + | chr8.1:3184292-3184311 | MS.gene035633:CDS | 35.0% |
! | TATTGCTCGTTTTCTTCATC+AGG | + | chr8.1:3186093-3186112 | MS.gene035633:intron | 35.0% |
! | TCTGTTTTCACATCATGTTG+AGG | + | chr8.1:3184377-3184396 | MS.gene035633:intron | 35.0% |
! | TGCTATTGAGGCAAATTTTG+AGG | + | chr8.1:3184612-3184631 | MS.gene035633:intron | 35.0% |
! | TTGCTTTCTTTTGTTGAGGT+AGG | + | chr8.1:3184197-3184216 | MS.gene035633:intron | 35.0% |
! | TTTCCCTACTTTGGTTTATC+GGG | + | chr8.1:3184082-3184101 | MS.gene035633:intron | 35.0% |
! | TTTTCCCGATAAACCAAAGT+AGG | - | chr8.1:3184089-3184108 | None:intergenic | 35.0% |
!!! | ATTTTTTCTCGATCTCGAAG+AGG | - | chr8.1:3186982-3187001 | None:intergenic | 35.0% |
!!! | CATTTTCAAGTCTCAGTGTA+AGG | + | chr8.1:3184635-3184654 | MS.gene035633:intron | 35.0% |
!!! | TTTTCAAGTCTCAGTGTAAG+GGG | + | chr8.1:3184637-3184656 | MS.gene035633:intron | 35.0% |
AAATAATCTGCAGCTCCAAG+AGG | - | chr8.1:3186175-3186194 | None:intergenic | 40.0% | |
AATCAAGCATGCAATAGAGC+TGG | - | chr8.1:3184730-3184749 | None:intergenic | 40.0% | |
ACCCTTCATTGCAACATTGA+AGG | + | chr8.1:3185608-3185627 | MS.gene035633:CDS | 40.0% | |
AGATGCATAGCTCATGAGAT+TGG | + | chr8.1:3185722-3185741 | MS.gene035633:CDS | 40.0% | |
ATCAGCTGAGATAGATCTTG+TGG | - | chr8.1:3183802-3183821 | None:intergenic | 40.0% | |
CAATATCCGAGGCTAAACAA+AGG | + | chr8.1:3186946-3186965 | MS.gene035633:CDS | 40.0% | |
CCAAGAAGTGGAAGTAGTAA+TGG | + | chr8.1:3185963-3185982 | MS.gene035633:CDS | 40.0% | |
CCACCCTCATATAGATTATC+TGG | - | chr8.1:3185567-3185586 | None:intergenic | 40.0% | |
CCAGATAATCTATATGAGGG+TGG | + | chr8.1:3185564-3185583 | MS.gene035633:CDS | 40.0% | |
CCATTACTACTTCCACTTCT+TGG | - | chr8.1:3185966-3185985 | None:intergenic | 40.0% | |
CTCATGCAAAATGCAAACGA+GGG | + | chr8.1:3186232-3186251 | MS.gene035633:intron | 40.0% | |
GATCAACAGCAGAGAATACT+TGG | + | chr8.1:3187295-3187314 | MS.gene035633:CDS | 40.0% | |
GATGCTGTGAAGATCACAAA+TGG | + | chr8.1:3183819-3183838 | MS.gene035633:CDS | 40.0% | |
GCTAATGGTGAATTGGTAGA+TGG | + | chr8.1:3184000-3184019 | MS.gene035633:CDS | 40.0% | |
GTAATAAAGCAGCTGCACAT+AGG | + | chr8.1:3186491-3186510 | MS.gene035633:CDS | 40.0% | |
GTTTATCGGGAAAATGTTGC+TGG | + | chr8.1:3184095-3184114 | MS.gene035633:intron | 40.0% | |
TCTCATGCAAAATGCAAACG+AGG | + | chr8.1:3186231-3186250 | MS.gene035633:intron | 40.0% | |
TGACTACCGCAAAATGACTT+CGG | + | chr8.1:3185754-3185773 | MS.gene035633:CDS | 40.0% | |
TGAGATAGATCTTGTGGATG+TGG | - | chr8.1:3183796-3183815 | None:intergenic | 40.0% | |
TGCCAACCAAATAGAATCCT+TGG | - | chr8.1:3185879-3185898 | None:intergenic | 40.0% | |
TGTCACAGCTTGAGATTTGT+TGG | + | chr8.1:3185328-3185347 | MS.gene035633:intron | 40.0% | |
TTTCAGCAGTTGATTGGAGA+AGG | + | chr8.1:3185928-3185947 | MS.gene035633:CDS | 40.0% | |
! | CCAATGATGCCTTATTGAAG+TGG | - | chr8.1:3186757-3186776 | None:intergenic | 40.0% |
! | CCACTTCAATAAGGCATCAT+TGG | + | chr8.1:3186754-3186773 | MS.gene035633:intron | 40.0% |
! | CTTGGAGCTGCAGATTATTT+TGG | + | chr8.1:3186175-3186194 | MS.gene035633:CDS | 40.0% |
! | TCAATAAGGCATCATTGGGA+CGG | + | chr8.1:3186759-3186778 | MS.gene035633:intron | 40.0% |
! | TGAACAAACTCTAGAGGTTG+AGG | + | chr8.1:3187130-3187149 | MS.gene035633:intron | 40.0% |
! | TGCACATAGGTTTGTCACTT+TGG | + | chr8.1:3186504-3186523 | MS.gene035633:CDS | 40.0% |
!! | ACATAGGTTTGTCACTTTGG+TGG | + | chr8.1:3186507-3186526 | MS.gene035633:CDS | 40.0% |
!! | GAGATTTGTTGGTCTTCTGT+AGG | + | chr8.1:3185339-3185358 | MS.gene035633:intron | 40.0% |
!! | GTCATACCGAAGTCATTTTG+CGG | - | chr8.1:3185763-3185782 | None:intergenic | 40.0% |
!! | TTGATGGCATCCCGATTTTT+GGG | + | chr8.1:3186464-3186483 | MS.gene035633:CDS | 40.0% |
!!! | GCTTGATTTTTTTCATCCCC+AGG | + | chr8.1:3184742-3184761 | MS.gene035633:intron | 40.0% |
CAAAAGACCGCACCATTAGT+AGG | + | chr8.1:3187042-3187061 | MS.gene035633:CDS | 45.0% | |
CACTGGCAAAACTATGCTGA+TGG | + | chr8.1:3184519-3184538 | MS.gene035633:CDS | 45.0% | |
CCTTCGCATTCACCTGTAAA+AGG | + | chr8.1:3184472-3184491 | MS.gene035633:CDS | 45.0% | |
CTTCGTTCATACTCGACAAG+AGG | - | chr8.1:3183976-3183995 | None:intergenic | 45.0% | |
GCGATCCAATTGGCATTCAT+CGG | - | chr8.1:3184274-3184293 | None:intergenic | 45.0% | |
GCTGTGAAGATCACAAATGG+AGG | + | chr8.1:3183822-3183841 | MS.gene035633:CDS | 45.0% | |
GGCCAAGGATTCTATTTGGT+TGG | + | chr8.1:3185874-3185893 | MS.gene035633:CDS | 45.0% | |
GGTAGATGGTGATAGTTGTC+AGG | + | chr8.1:3184014-3184033 | MS.gene035633:CDS | 45.0% | |
TGCTAATTTGGACTGTAGGG+TGG | + | chr8.1:3185853-3185872 | MS.gene035633:intron | 45.0% | |
TTCACATCATGTTGAGGCTC+TGG | + | chr8.1:3184383-3184402 | MS.gene035633:intron | 45.0% | |
TTCTTCCAATTTGAGGGCCT+GGG | - | chr8.1:3184762-3184781 | None:intergenic | 45.0% | |
TTGGTTGGCAGTGATTCATC+TGG | + | chr8.1:3185889-3185908 | MS.gene035633:CDS | 45.0% | |
TTTACAGACATGGGTGGCTT+TGG | + | chr8.1:3184431-3184450 | MS.gene035633:intron | 45.0% | |
TTTCTTCATCAGGTCCCGTT+GGG | + | chr8.1:3186103-3186122 | MS.gene035633:intron | 45.0% | |
TTTCTTCCAATTTGAGGGCC+TGG | - | chr8.1:3184763-3184782 | None:intergenic | 45.0% | |
! | ATCTGGAGCACGATTTGAAG+TGG | - | chr8.1:3185550-3185569 | None:intergenic | 45.0% |
! | CCTTTTACAGGTGAATGCGA+AGG | - | chr8.1:3184475-3184494 | None:intergenic | 45.0% |
! | GAGCTTTGTGACAAACCTCT+TGG | + | chr8.1:3186157-3186176 | MS.gene035633:CDS | 45.0% |
! | GCAAACGAGGGTTTCCATTT+TGG | + | chr8.1:3186244-3186263 | MS.gene035633:intron | 45.0% |
! | GTGTCCTTGTAGAAGCACAA+GGG | + | chr8.1:3185174-3185193 | MS.gene035633:intron | 45.0% |
! | TGTGTCCTTGTAGAAGCACA+AGG | + | chr8.1:3185173-3185192 | MS.gene035633:intron | 45.0% |
! | TTTTCTTCATCAGGTCCCGT+TGG | + | chr8.1:3186102-3186121 | MS.gene035633:intron | 45.0% |
!! | CTTGATGGCATCCCGATTTT+TGG | + | chr8.1:3186463-3186482 | MS.gene035633:CDS | 45.0% |
ACTTCCACTTCTTGGGGAGT+AGG | - | chr8.1:3185958-3185977 | None:intergenic | 50.0% | |
CAACATCCAGTGGATCTGAC+AGG | - | chr8.1:3185200-3185219 | None:intergenic | 50.0% | |
CACATCCATTAGCTCCCAAC+GGG | - | chr8.1:3186120-3186139 | None:intergenic | 50.0% | |
CTTTATGGAGGAGTAGGCAC+TGG | + | chr8.1:3184502-3184521 | MS.gene035633:CDS | 50.0% | |
GATCCACTGGATGTTGTTGC+AGG | + | chr8.1:3185204-3185223 | MS.gene035633:CDS | 50.0% | |
GCACATCCATTAGCTCCCAA+CGG | - | chr8.1:3186121-3186140 | None:intergenic | 50.0% | |
GCATGCCGATGAATGCCAAT+TGG | + | chr8.1:3184266-3184285 | MS.gene035633:CDS | 50.0% | |
GGGTGGCCAAGGATTCTATT+TGG | + | chr8.1:3185870-3185889 | MS.gene035633:intron | 50.0% | |
TCTCCTGCAACAACATCCAG+TGG | - | chr8.1:3185210-3185229 | None:intergenic | 50.0% | |
TCTTCCAATTTGAGGGCCTG+GGG | - | chr8.1:3184761-3184780 | None:intergenic | 50.0% | |
!! | ATATGAGGGTGGACTGCAGA+GGG | + | chr8.1:3185575-3185594 | MS.gene035633:CDS | 50.0% |
!! | TATATGAGGGTGGACTGCAG+AGG | + | chr8.1:3185574-3185593 | MS.gene035633:CDS | 50.0% |
CACACCTACTCCCCAAGAAG+TGG | + | chr8.1:3185951-3185970 | MS.gene035633:CDS | 55.0% | |
CAGGCCCTTGTGCTTCTACA+AGG | - | chr8.1:3185181-3185200 | None:intergenic | 55.0% | |
CTCGATCTCGAAGAGGTCCT+GGG | - | chr8.1:3186975-3186994 | None:intergenic | 55.0% | |
TCATCCCCAGGCCCTCAAAT+TGG | + | chr8.1:3184754-3184773 | MS.gene035633:intron | 55.0% | |
TCTCGATCTCGAAGAGGTCC+TGG | - | chr8.1:3186976-3186995 | None:intergenic | 55.0% | |
TTTGGACTGTAGGGTGGCCA+AGG | + | chr8.1:3185859-3185878 | MS.gene035633:intron | 55.0% | |
! | GGGTGCCCTTTGTTTAGCCT+CGG | - | chr8.1:3186955-3186974 | None:intergenic | 55.0% |
!! | AGGCTAAACAAAGGGCACCC+AGG | + | chr8.1:3186955-3186974 | MS.gene035633:CDS | 55.0% |
CAAGGGCCTGTCAGATCCAC+TGG | + | chr8.1:3185191-3185210 | MS.gene035633:CDS | 60.0% | |
CAGGTCCCGTTGGGAGCTAA+TGG | + | chr8.1:3186112-3186131 | MS.gene035633:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 3183606 | 3187376 | 3183606 | ID=MS.gene035633 |
chr8.1 | mRNA | 3183606 | 3187376 | 3183606 | ID=MS.gene035633.t1;Parent=MS.gene035633 |
chr8.1 | exon | 3183606 | 3183843 | 3183606 | ID=MS.gene035633.t1.exon1;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3183606 | 3183843 | 3183606 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3183956 | 3184035 | 3183956 | ID=MS.gene035633.t1.exon2;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3183956 | 3184035 | 3183956 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3184219 | 3184313 | 3184219 | ID=MS.gene035633.t1.exon3;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3184219 | 3184313 | 3184219 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3184438 | 3184560 | 3184438 | ID=MS.gene035633.t1.exon4;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3184438 | 3184560 | 3184438 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3184764 | 3184833 | 3184764 | ID=MS.gene035633.t1.exon5;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3184764 | 3184833 | 3184764 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3185186 | 3185272 | 3185186 | ID=MS.gene035633.t1.exon6;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3185186 | 3185272 | 3185186 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3185361 | 3185426 | 3185361 | ID=MS.gene035633.t1.exon7;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3185361 | 3185426 | 3185361 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3185537 | 3185629 | 3185537 | ID=MS.gene035633.t1.exon8;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3185537 | 3185629 | 3185537 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3185719 | 3185775 | 3185719 | ID=MS.gene035633.t1.exon9;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3185719 | 3185775 | 3185719 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3185871 | 3185999 | 3185871 | ID=MS.gene035633.t1.exon10;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3185871 | 3185999 | 3185871 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3186115 | 3186205 | 3186115 | ID=MS.gene035633.t1.exon11;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3186115 | 3186205 | 3186115 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3186443 | 3186531 | 3186443 | ID=MS.gene035633.t1.exon12;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3186443 | 3186531 | 3186443 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3186870 | 3187063 | 3186870 | ID=MS.gene035633.t1.exon13;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3186870 | 3187063 | 3186870 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
chr8.1 | exon | 3187286 | 3187376 | 3187286 | ID=MS.gene035633.t1.exon14;Parent=MS.gene035633.t1 |
chr8.1 | CDS | 3187286 | 3187376 | 3187286 | ID=cds.MS.gene035633.t1;Parent=MS.gene035633.t1 |
Gene Sequence |
Protein sequence |