Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012584.t1 | XP_003610360.1 | 96.4 | 531 | 18 | 1 | 1 | 531 | 1 | 530 | 9.20E-291 | 1008.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012584.t1 | Q6CC39 | 33.0 | 436 | 235 | 10 | 49 | 480 | 79 | 461 | 3.5e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012584.t1 | G7JGU0 | 96.4 | 531 | 18 | 1 | 1 | 531 | 1 | 530 | 6.6e-291 | 1008.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005792 | MS.gene012584 | PPI |
| MS.gene68085 | MS.gene012584 | PPI |
| MS.gene012584 | MS.gene09988 | PPI |
| MS.gene60517 | MS.gene012584 | PPI |
| MS.gene59369 | MS.gene012584 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012584.t1 | MTR_4g131270 | 96.422 | 531 | 18 | 1 | 1 | 531 | 1 | 530 | 0.0 | 1053 |
| MS.gene012584.t1 | MTR_4g131220 | 96.234 | 531 | 19 | 1 | 1 | 531 | 1 | 530 | 0.0 | 1052 |
| MS.gene012584.t1 | MTR_4g131200 | 96.221 | 344 | 13 | 0 | 188 | 531 | 18 | 361 | 0.0 | 679 |
| MS.gene012584.t1 | MTR_4g131205 | 97.727 | 132 | 3 | 0 | 32 | 163 | 1 | 132 | 5.81e-89 | 269 |
| MS.gene012584.t1 | MTR_5g074640 | 23.414 | 457 | 260 | 13 | 52 | 477 | 54 | 451 | 7.23e-22 | 99.4 |
| MS.gene012584.t1 | MTR_5g074620 | 30.968 | 155 | 94 | 3 | 33 | 175 | 36 | 189 | 5.11e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012584.t1 | AT1G20370 | 57.030 | 505 | 174 | 8 | 16 | 502 | 12 | 491 | 0.0 | 557 |
| MS.gene012584.t1 | AT1G76120 | 58.898 | 472 | 157 | 8 | 32 | 501 | 1 | 437 | 0.0 | 542 |
| MS.gene012584.t1 | AT1G76120 | 56.266 | 391 | 134 | 8 | 32 | 420 | 1 | 356 | 9.74e-141 | 410 |
| MS.gene012584.t1 | AT2G30320 | 35.000 | 140 | 79 | 2 | 52 | 179 | 60 | 199 | 1.50e-18 | 89.0 |
Find 117 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGCTTTGTATGTTTC+TGG | 0.086550 | 8.1:+2448731 | MS.gene012584:CDS |
| CTTACCTTCGTTGTCATTAA+TGG | 0.120392 | 8.1:-2449275 | None:intergenic |
| CATGGGTATCTTTCCACTTC+TGG | 0.173591 | 8.1:-2449919 | None:intergenic |
| TGCTGTTGGTCAGGTTGTTT+CGG | 0.216572 | 8.1:+2448832 | MS.gene012584:CDS |
| GCTGTTGGTCAGGTTGTTTC+GGG | 0.226417 | 8.1:+2448833 | MS.gene012584:CDS |
| TTACTGCGGTGTTGGTTATC+AGG | 0.256135 | 8.1:+2448664 | MS.gene012584:CDS |
| GTGAGGGAAGGTTTGAATTA+AGG | 0.305638 | 8.1:-2448892 | None:intergenic |
| GGTAGACATCTTCACCTTCT+TGG | 0.311420 | 8.1:-2448558 | None:intergenic |
| CCCTCACAGATACGAATCTT+TGG | 0.317752 | 8.1:+2448908 | MS.gene012584:CDS |
| TATTGCTTCCACAGAATATA+AGG | 0.337574 | 8.1:+2450009 | MS.gene012584:CDS |
| CTTTCATTGACACCTCTTCA+TGG | 0.363909 | 8.1:-2449937 | None:intergenic |
| GAGACTGTATTGGCTAGTTT+AGG | 0.366065 | 8.1:+2449040 | MS.gene012584:CDS |
| GAAAGTCCACGATCCTGTTC+AGG | 0.366757 | 8.1:-2448761 | None:intergenic |
| GCAGATCTGGATAGTTTCTA+TGG | 0.367344 | 8.1:-2450066 | None:intergenic |
| TAAAACTGTGGTTTCTGATC+AGG | 0.376101 | 8.1:+2449321 | MS.gene012584:CDS |
| GGTGGATCTGAGAATAATTT+AGG | 0.393164 | 8.1:+2449364 | MS.gene012584:CDS |
| CCGTCAAGGATGCGCAGATC+TGG | 0.394239 | 8.1:-2450079 | None:intergenic |
| TTAGAATTTACTTCTTCAAC+TGG | 0.399023 | 8.1:-2449301 | None:intergenic |
| TTCTTTGCTTACTGCGGTGT+TGG | 0.404138 | 8.1:+2448656 | MS.gene012584:CDS |
| AGGAAGGAACTGTTGGTCTA+TGG | 0.410886 | 8.1:+2450029 | MS.gene012584:CDS |
| AGGAGTTAGTGCTGTTGGTC+AGG | 0.420318 | 8.1:+2448823 | MS.gene012584:CDS |
| CGGTCAGCTAGAACTGATAA+AGG | 0.424782 | 8.1:+2448803 | MS.gene012584:CDS |
| CCAGATCTGCGCATCCTTGA+CGG | 0.424998 | 8.1:+2450079 | MS.gene012584:CDS |
| TTCTGGAGCTGTACCTGAAC+AGG | 0.432347 | 8.1:+2448748 | MS.gene012584:CDS |
| GACTTTCTAAACGCTATGAC+TGG | 0.432785 | 8.1:+2448777 | MS.gene012584:CDS |
| TTATTCTGGTCGTGAAGTTA+TGG | 0.445236 | 8.1:-2449513 | None:intergenic |
| CAGATCTGCGCATCCTTGAC+GGG | 0.449223 | 8.1:+2450080 | MS.gene012584:CDS |
| CCTTCAATAGTCTTTGCACC+AGG | 0.460741 | 8.1:-2448701 | None:intergenic |
| TTACTTCATATAACCAGAAG+TGG | 0.464262 | 8.1:+2449906 | MS.gene012584:CDS |
| TACAACTGCTGAAGGAAGTA+AGG | 0.470835 | 8.1:+2448604 | MS.gene012584:CDS |
| CCTGGTGCAAAGACTATTGA+AGG | 0.472541 | 8.1:+2448701 | MS.gene012584:CDS |
| TTCAGTAGCCGCGGAAGAGC+CGG | 0.474647 | 8.1:+2448532 | MS.gene012584:CDS |
| GATACGGCTGCCAATGGAAG+TGG | 0.482571 | 8.1:+2449418 | MS.gene012584:CDS |
| GTGCCTACTGCACCCGAGGT+TGG | 0.486292 | 8.1:+2449860 | MS.gene012584:CDS |
| AATGAAAGCATATGAGAAAG+AGG | 0.488811 | 8.1:+2449952 | MS.gene012584:CDS |
| TACTGCGGTGTTGGTTATCA+GGG | 0.489262 | 8.1:+2448665 | MS.gene012584:CDS |
| TCATCAGATACGGAAGATGA+TGG | 0.493754 | 8.1:+2449651 | MS.gene012584:CDS |
| CGATTCTATATTGATGCACC+TGG | 0.495087 | 8.1:+2448857 | MS.gene012584:CDS |
| GGCCCGAAGAAAATTTCATT+CGG | 0.495388 | 8.1:-2450173 | None:intergenic |
| CAAAGAAAATCGCTACCTTA+CGG | 0.496906 | 8.1:-2448640 | None:intergenic |
| ATTTGTGAAGTGTGAGATTG+TGG | 0.497348 | 8.1:+2449612 | MS.gene012584:CDS |
| GAGAGGAAGAAAAGTGGAAG+GGG | 0.504504 | 8.1:+2449102 | MS.gene012584:CDS |
| CATCAGATACGGAAGATGAT+GGG | 0.507228 | 8.1:+2449652 | MS.gene012584:CDS |
| AGAAAAGTGGAAGGGGTGGT+TGG | 0.512312 | 8.1:+2449109 | MS.gene012584:CDS |
| CACTGTTGTAGTTGAGGGCA+TGG | 0.514451 | 8.1:+2449588 | MS.gene012584:CDS |
| GGAAGAGCCGGTGGCCAAGA+AGG | 0.516556 | 8.1:+2448544 | MS.gene012584:CDS |
| AAAAGTGAACGGAGAGGATA+CGG | 0.517227 | 8.1:+2449402 | MS.gene012584:CDS |
| CTAAACGCTATGACTGGGCT+CGG | 0.517397 | 8.1:+2448783 | MS.gene012584:CDS |
| AGCACCACTGTTGTAGTTGA+GGG | 0.518752 | 8.1:+2449583 | MS.gene012584:CDS |
| ATCTAAATATAATCCAACCT+CGG | 0.518807 | 8.1:-2449873 | None:intergenic |
| AGGAAGAAAAGTGGAAGGGG+TGG | 0.523374 | 8.1:+2449105 | MS.gene012584:CDS |
| TCTAAATATAATCCAACCTC+GGG | 0.523459 | 8.1:-2449872 | None:intergenic |
| GAGAGAGGAAGAAAAGTGGA+AGG | 0.524603 | 8.1:+2449100 | MS.gene012584:CDS |
| TTCTGAGAGAGGAAGAAAAG+TGG | 0.528778 | 8.1:+2449096 | MS.gene012584:CDS |
| GTTGAGGTTTCTTTAAGCAA+AGG | 0.530209 | 8.1:+2449226 | MS.gene012584:CDS |
| CATTAATGACAACGAAGGTA+AGG | 0.533286 | 8.1:+2449276 | MS.gene012584:CDS |
| TATTCTGTGGAAGCAATATG+AGG | 0.533607 | 8.1:-2450004 | None:intergenic |
| AGCATATGAGAAAGAGGCTG+AGG | 0.533806 | 8.1:+2449958 | MS.gene012584:CDS |
| AGAGAGGAAGAAAAGTGGAA+GGG | 0.535330 | 8.1:+2449101 | MS.gene012584:CDS |
| CACTGTGCCTACTGCACCCG+AGG | 0.538197 | 8.1:+2449856 | MS.gene012584:CDS |
| TTTCATTGACACCTCTTCAT+GGG | 0.538326 | 8.1:-2449936 | None:intergenic |
| ATCTTCACCTTCTTGGCCAC+CGG | 0.541488 | 8.1:-2448551 | None:intergenic |
| AGAAGTAAATTCTAAAACTG+TGG | 0.542353 | 8.1:+2449309 | MS.gene012584:CDS |
| CAGGTGCATCAATATAGAAT+CGG | 0.544533 | 8.1:-2448856 | None:intergenic |
| GATAAAGGAGTTAGTGCTGT+TGG | 0.545304 | 8.1:+2448818 | MS.gene012584:CDS |
| AGTTCCTTCCTTATATTCTG+TGG | 0.546489 | 8.1:-2450017 | None:intergenic |
| GCTTCATGCTTCATCAGATA+CGG | 0.547048 | 8.1:+2449641 | MS.gene012584:CDS |
| CCAAAGATTCGTATCTGTGA+GGG | 0.547978 | 8.1:-2448908 | None:intergenic |
| TTAAGGCGATCAACGAAGCC+AGG | 0.552578 | 8.1:-2448875 | None:intergenic |
| ATAACAAAACCCACTTCCAT+TGG | 0.552929 | 8.1:-2449428 | None:intergenic |
| GAATATAAGGAAGGAACTGT+TGG | 0.554434 | 8.1:+2450022 | MS.gene012584:CDS |
| TTGTTATGGTGAGAAGGAGA+GGG | 0.555405 | 8.1:+2449444 | MS.gene012584:CDS |
| AAGCACCACTGTTGTAGTTG+AGG | 0.555686 | 8.1:+2449582 | MS.gene012584:CDS |
| TGGAGTTACAAAGGATGTTG+AGG | 0.558784 | 8.1:+2449210 | MS.gene012584:CDS |
| GCTACTGAAAGTAACGGCGC+TGG | 0.559828 | 8.1:-2448518 | None:intergenic |
| TTTCTTCCTCTCTCAGAACA+TGG | 0.560829 | 8.1:-2449091 | None:intergenic |
| AATCCAACCTCGGGTGCAGT+AGG | 0.564016 | 8.1:-2449863 | None:intergenic |
| CTGCGCATCCTTGACGGGGA+AGG | 0.565379 | 8.1:+2450085 | MS.gene012584:CDS |
| ACCACTACTTCTGATGATGA+AGG | 0.569745 | 8.1:+2448578 | MS.gene012584:CDS |
| GATGAGGTTGCTGCTACAAA+TGG | 0.573318 | 8.1:+2449343 | MS.gene012584:CDS |
| TCCTTCATCATCAGAAGTAG+TGG | 0.575739 | 8.1:-2448579 | None:intergenic |
| GGAGAGGATACGGCTGCCAA+TGG | 0.576386 | 8.1:+2449412 | MS.gene012584:CDS |
| TCGCGATAGAGAGACTGTAT+TGG | 0.594900 | 8.1:+2449030 | MS.gene012584:CDS |
| TTTGTTATGGTGAGAAGGAG+AGG | 0.595584 | 8.1:+2449443 | MS.gene012584:CDS |
| GCTGGAGATGATGAAGTTGA+CGG | 0.600440 | 8.1:-2448500 | None:intergenic |
| GCTTTCTCGATAAGTGACTC+AGG | 0.601494 | 8.1:-2449706 | None:intergenic |
| GAAGCTGATGATGTTGAGAA+TGG | 0.601511 | 8.1:+2449157 | MS.gene012584:CDS |
| ATCAGATACGGAAGATGATG+GGG | 0.604058 | 8.1:+2449653 | MS.gene012584:CDS |
| TCGTGACACCTTCCCCGTCA+AGG | 0.607550 | 8.1:-2450093 | None:intergenic |
| CTTCAATAGTCTTTGCACCA+GGG | 0.608022 | 8.1:-2448700 | None:intergenic |
| GGTAAGATACAAGCGCCGTA+AGG | 0.609527 | 8.1:+2448625 | MS.gene012584:CDS |
| TCTCTATCGCGATGACAACA+TGG | 0.610304 | 8.1:-2449019 | None:intergenic |
| CTTGGCCACCGGCTCTTCCG+CGG | 0.611177 | 8.1:-2448540 | None:intergenic |
| GAAGATGATGGGGCTTGCCG+TGG | 0.611519 | 8.1:+2449663 | MS.gene012584:CDS |
| GCCGTTACTTTCAGTAGCCG+CGG | 0.614182 | 8.1:+2448523 | MS.gene012584:CDS |
| TTTGTGAAGTGTGAGATTGT+GGG | 0.614643 | 8.1:+2449613 | MS.gene012584:CDS |
| GAGGTTGCTGCTACAAATGG+TGG | 0.614830 | 8.1:+2449346 | MS.gene012584:CDS |
| ACTTTCTAAACGCTATGACT+GGG | 0.615231 | 8.1:+2448778 | MS.gene012584:CDS |
| AGTAGCCGCGGAAGAGCCGG+TGG | 0.619790 | 8.1:+2448535 | MS.gene012584:CDS |
| ACAATTTCTCATAATTGCCA+CGG | 0.619993 | 8.1:-2449680 | None:intergenic |
| GTGGAAAGATACCCATGAAG+AGG | 0.624853 | 8.1:+2449925 | MS.gene012584:CDS |
| TGTTTGCCATGTTCTGAGAG+AGG | 0.628824 | 8.1:+2449085 | MS.gene012584:CDS |
| TGTGGTTTCTGATCAGGATG+AGG | 0.630641 | 8.1:+2449327 | MS.gene012584:CDS |
| GCTTCCACAGAATATAAGGA+AGG | 0.637022 | 8.1:+2450013 | MS.gene012584:CDS |
| CATGCCCTCAACTACAACAG+TGG | 0.639893 | 8.1:-2449587 | None:intergenic |
| GAAGGATGTACAACTGCTGA+AGG | 0.641304 | 8.1:+2448596 | MS.gene012584:CDS |
| GCTGTACCTGAACAGGATCG+TGG | 0.643569 | 8.1:+2448755 | MS.gene012584:CDS |
| ACCAAAGATTCGTATCTGTG+AGG | 0.646180 | 8.1:-2448909 | None:intergenic |
| AGATCTGCGCATCCTTGACG+GGG | 0.657312 | 8.1:+2450081 | MS.gene012584:CDS |
| ATACGGCTGCCAATGGAAGT+GGG | 0.658422 | 8.1:+2449419 | MS.gene012584:CDS |
| AGATTCGTATCTGTGAGGGA+AGG | 0.664361 | 8.1:-2448904 | None:intergenic |
| GAATAATTTAGGCATTCTCG+AGG | 0.670398 | 8.1:+2449375 | MS.gene012584:CDS |
| GAATCCATTAATGACAACGA+AGG | 0.693322 | 8.1:+2449271 | MS.gene012584:CDS |
| TCCGCGGCTACTGAAAGTAA+CGG | 0.694317 | 8.1:-2448524 | None:intergenic |
| GGTTGACTCTGGAGTTACAA+AGG | 0.706513 | 8.1:+2449201 | MS.gene012584:CDS |
| CACGACCAGAATAAAACCCG+AGG | 0.709736 | 8.1:+2449522 | MS.gene012584:CDS |
| CATGGATCAAGAGCAAACAC+AGG | 0.714774 | 8.1:-2449001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTTCAAATATAAAGT+TGG | - | chr8.1:2449772-2449791 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAGTGTTATGT+TGG | + | chr8.1:2449478-2449497 | MS.gene012584:CDS | 20.0% |
| !!! | ATATTTTGAAGTGTTATGTT+GGG | + | chr8.1:2449479-2449498 | MS.gene012584:CDS | 20.0% |
| ! | ATCTAAATATAATCCAACCT+CGG | - | chr8.1:2449876-2449895 | None:intergenic | 25.0% |
| ! | TTAGAATTTACTTCTTCAAC+TGG | - | chr8.1:2449304-2449323 | None:intergenic | 25.0% |
| ! | TTCATCAAACAAAAATGATG+TGG | + | chr8.1:2449180-2449199 | MS.gene012584:CDS | 25.0% |
| !!! | AGAAGTAAATTCTAAAACTG+TGG | + | chr8.1:2449309-2449328 | MS.gene012584:CDS | 25.0% |
| ACAATTTCTCATAATTGCCA+CGG | - | chr8.1:2449683-2449702 | None:intergenic | 30.0% | |
| TATTGCTTCCACAGAATATA+AGG | + | chr8.1:2450009-2450028 | MS.gene012584:CDS | 30.0% | |
| TCTAAATATAATCCAACCTC+GGG | - | chr8.1:2449875-2449894 | None:intergenic | 30.0% | |
| TTACTTCATATAACCAGAAG+TGG | + | chr8.1:2449906-2449925 | MS.gene012584:CDS | 30.0% | |
| ! | AATGAAAGCATATGAGAAAG+AGG | + | chr8.1:2449952-2449971 | MS.gene012584:CDS | 30.0% |
| ! | ATAATGAAACGTTTTGCAGA+AGG | - | chr8.1:2449550-2449569 | None:intergenic | 30.0% |
| ACTTTCTAAACGCTATGACT+GGG | + | chr8.1:2448778-2448797 | MS.gene012584:CDS | 35.0% | |
| AGTTCCTTCCTTATATTCTG+TGG | - | chr8.1:2450020-2450039 | None:intergenic | 35.0% | |
| ATAACAAAACCCACTTCCAT+TGG | - | chr8.1:2449431-2449450 | None:intergenic | 35.0% | |
| ATTGTTTCGTCCAAAATGCA+GGG | + | chr8.1:2449823-2449842 | MS.gene012584:intron | 35.0% | |
| ATTTGTGAAGTGTGAGATTG+TGG | + | chr8.1:2449612-2449631 | MS.gene012584:CDS | 35.0% | |
| CAAAGAAAATCGCTACCTTA+CGG | - | chr8.1:2448643-2448662 | None:intergenic | 35.0% | |
| CAGGTGCATCAATATAGAAT+CGG | - | chr8.1:2448859-2448878 | None:intergenic | 35.0% | |
| CATTAATGACAACGAAGGTA+AGG | + | chr8.1:2449276-2449295 | MS.gene012584:CDS | 35.0% | |
| CTTACCTTCGTTGTCATTAA+TGG | - | chr8.1:2449278-2449297 | None:intergenic | 35.0% | |
| GAATAATTTAGGCATTCTCG+AGG | + | chr8.1:2449375-2449394 | MS.gene012584:CDS | 35.0% | |
| GAATATAAGGAAGGAACTGT+TGG | + | chr8.1:2450022-2450041 | MS.gene012584:CDS | 35.0% | |
| GAATCCATTAATGACAACGA+AGG | + | chr8.1:2449271-2449290 | MS.gene012584:CDS | 35.0% | |
| GGTGGATCTGAGAATAATTT+AGG | + | chr8.1:2449364-2449383 | MS.gene012584:CDS | 35.0% | |
| GTTGAGGTTTCTTTAAGCAA+AGG | + | chr8.1:2449226-2449245 | MS.gene012584:CDS | 35.0% | |
| TAAAACTGTGGTTTCTGATC+AGG | + | chr8.1:2449321-2449340 | MS.gene012584:CDS | 35.0% | |
| TATTCTGTGGAAGCAATATG+AGG | - | chr8.1:2450007-2450026 | None:intergenic | 35.0% | |
| TTATTCTGGTCGTGAAGTTA+TGG | - | chr8.1:2449516-2449535 | None:intergenic | 35.0% | |
| TTTCATTGACACCTCTTCAT+GGG | - | chr8.1:2449939-2449958 | None:intergenic | 35.0% | |
| TTTGTGAAGTGTGAGATTGT+GGG | + | chr8.1:2449613-2449632 | MS.gene012584:CDS | 35.0% | |
| ! | AAAAATGATGTGGTTGACTC+TGG | + | chr8.1:2449190-2449209 | MS.gene012584:CDS | 35.0% |
| ! | GAAGAAGCTTTGTATGTTTC+TGG | + | chr8.1:2448731-2448750 | MS.gene012584:CDS | 35.0% |
| !! | CTAAGAAGTTTTGTGATCGT+AGG | + | chr8.1:2448960-2448979 | MS.gene012584:CDS | 35.0% |
| !!! | AATGGAAGTGGGTTTTGTTA+TGG | + | chr8.1:2449430-2449449 | MS.gene012584:CDS | 35.0% |
| AAAAGTGAACGGAGAGGATA+CGG | + | chr8.1:2449402-2449421 | MS.gene012584:CDS | 40.0% | |
| ACCAAAGATTCGTATCTGTG+AGG | - | chr8.1:2448912-2448931 | None:intergenic | 40.0% | |
| AGAGAGGAAGAAAAGTGGAA+GGG | + | chr8.1:2449101-2449120 | MS.gene012584:CDS | 40.0% | |
| ATCAGATACGGAAGATGATG+GGG | + | chr8.1:2449653-2449672 | MS.gene012584:CDS | 40.0% | |
| CATCAGATACGGAAGATGAT+GGG | + | chr8.1:2449652-2449671 | MS.gene012584:CDS | 40.0% | |
| CCAAAGATTCGTATCTGTGA+GGG | - | chr8.1:2448911-2448930 | None:intergenic | 40.0% | |
| CGATTCTATATTGATGCACC+TGG | + | chr8.1:2448857-2448876 | MS.gene012584:CDS | 40.0% | |
| CTCGAGGAAGAAAAAGTGAA+CGG | + | chr8.1:2449391-2449410 | MS.gene012584:CDS | 40.0% | |
| CTTCAATAGTCTTTGCACCA+GGG | - | chr8.1:2448703-2448722 | None:intergenic | 40.0% | |
| CTTTCATTGACACCTCTTCA+TGG | - | chr8.1:2449940-2449959 | None:intergenic | 40.0% | |
| GACTTTCTAAACGCTATGAC+TGG | + | chr8.1:2448777-2448796 | MS.gene012584:CDS | 40.0% | |
| GATAAAGGAGTTAGTGCTGT+TGG | + | chr8.1:2448818-2448837 | MS.gene012584:CDS | 40.0% | |
| GATTGTTTCGTCCAAAATGC+AGG | + | chr8.1:2449822-2449841 | MS.gene012584:intron | 40.0% | |
| GCAGATCTGGATAGTTTCTA+TGG | - | chr8.1:2450069-2450088 | None:intergenic | 40.0% | |
| GCTTCATGCTTCATCAGATA+CGG | + | chr8.1:2449641-2449660 | MS.gene012584:CDS | 40.0% | |
| GCTTCCACAGAATATAAGGA+AGG | + | chr8.1:2450013-2450032 | MS.gene012584:CDS | 40.0% | |
| GTGAGGGAAGGTTTGAATTA+AGG | - | chr8.1:2448895-2448914 | None:intergenic | 40.0% | |
| TACAACTGCTGAAGGAAGTA+AGG | + | chr8.1:2448604-2448623 | MS.gene012584:CDS | 40.0% | |
| TCATCAGATACGGAAGATGA+TGG | + | chr8.1:2449651-2449670 | MS.gene012584:CDS | 40.0% | |
| TCCTTCATCATCAGAAGTAG+TGG | - | chr8.1:2448582-2448601 | None:intergenic | 40.0% | |
| TGGAGTTACAAAGGATGTTG+AGG | + | chr8.1:2449210-2449229 | MS.gene012584:CDS | 40.0% | |
| TTGTTATGGTGAGAAGGAGA+GGG | + | chr8.1:2449444-2449463 | MS.gene012584:CDS | 40.0% | |
| TTTCTTCCTCTCTCAGAACA+TGG | - | chr8.1:2449094-2449113 | None:intergenic | 40.0% | |
| ! | ACCACTACTTCTGATGATGA+AGG | + | chr8.1:2448578-2448597 | MS.gene012584:CDS | 40.0% |
| ! | ATGCTAACATCCCTGCATTT+TGG | - | chr8.1:2449836-2449855 | None:intergenic | 40.0% |
| ! | GAAGCTGATGATGTTGAGAA+TGG | + | chr8.1:2449157-2449176 | MS.gene012584:CDS | 40.0% |
| ! | GCGATTTTCTTTGCTTACTG+CGG | + | chr8.1:2448650-2448669 | MS.gene012584:CDS | 40.0% |
| ! | TTCTGAGAGAGGAAGAAAAG+TGG | + | chr8.1:2449096-2449115 | MS.gene012584:CDS | 40.0% |
| ! | TTTGTTATGGTGAGAAGGAG+AGG | + | chr8.1:2449443-2449462 | MS.gene012584:CDS | 40.0% |
| !! | AGAAGTTTTGTGATCGTAGG+AGG | + | chr8.1:2448963-2448982 | MS.gene012584:CDS | 40.0% |
| !! | GAGACTGTATTGGCTAGTTT+AGG | + | chr8.1:2449040-2449059 | MS.gene012584:CDS | 40.0% |
| !!! | TGGGTTTTGTTATGGTGAGA+AGG | + | chr8.1:2449438-2449457 | MS.gene012584:CDS | 40.0% |
| AAGCACCACTGTTGTAGTTG+AGG | + | chr8.1:2449582-2449601 | MS.gene012584:CDS | 45.0% | |
| AGATTCGTATCTGTGAGGGA+AGG | - | chr8.1:2448907-2448926 | None:intergenic | 45.0% | |
| AGCACCACTGTTGTAGTTGA+GGG | + | chr8.1:2449583-2449602 | MS.gene012584:CDS | 45.0% | |
| AGCATATGAGAAAGAGGCTG+AGG | + | chr8.1:2449958-2449977 | MS.gene012584:CDS | 45.0% | |
| CATGGATCAAGAGCAAACAC+AGG | - | chr8.1:2449004-2449023 | None:intergenic | 45.0% | |
| CATGGGTATCTTTCCACTTC+TGG | - | chr8.1:2449922-2449941 | None:intergenic | 45.0% | |
| CCCTCACAGATACGAATCTT+TGG | + | chr8.1:2448908-2448927 | MS.gene012584:CDS | 45.0% | |
| CCTGGTGCAAAGACTATTGA+AGG | + | chr8.1:2448701-2448720 | MS.gene012584:CDS | 45.0% | |
| CCTTCAATAGTCTTTGCACC+AGG | - | chr8.1:2448704-2448723 | None:intergenic | 45.0% | |
| CGGTCAGCTAGAACTGATAA+AGG | + | chr8.1:2448803-2448822 | MS.gene012584:CDS | 45.0% | |
| GAAGGATGTACAACTGCTGA+AGG | + | chr8.1:2448596-2448615 | MS.gene012584:CDS | 45.0% | |
| GAGAGAGGAAGAAAAGTGGA+AGG | + | chr8.1:2449100-2449119 | MS.gene012584:CDS | 45.0% | |
| GAGAGGAAGAAAAGTGGAAG+GGG | + | chr8.1:2449102-2449121 | MS.gene012584:CDS | 45.0% | |
| GATGAGGTTGCTGCTACAAA+TGG | + | chr8.1:2449343-2449362 | MS.gene012584:CDS | 45.0% | |
| GCTGGAGATGATGAAGTTGA+CGG | - | chr8.1:2448503-2448522 | None:intergenic | 45.0% | |
| GCTTTCTCGATAAGTGACTC+AGG | - | chr8.1:2449709-2449728 | None:intergenic | 45.0% | |
| GGAAGAAAAAGTGAACGGAG+AGG | + | chr8.1:2449396-2449415 | MS.gene012584:CDS | 45.0% | |
| GGTAGACATCTTCACCTTCT+TGG | - | chr8.1:2448561-2448580 | None:intergenic | 45.0% | |
| GTGGAAAGATACCCATGAAG+AGG | + | chr8.1:2449925-2449944 | MS.gene012584:CDS | 45.0% | |
| TCGCGATAGAGAGACTGTAT+TGG | + | chr8.1:2449030-2449049 | MS.gene012584:CDS | 45.0% | |
| TCTCTATCGCGATGACAACA+TGG | - | chr8.1:2449022-2449041 | None:intergenic | 45.0% | |
| TGTGGTTTCTGATCAGGATG+AGG | + | chr8.1:2449327-2449346 | MS.gene012584:CDS | 45.0% | |
| TTCTTTGCTTACTGCGGTGT+TGG | + | chr8.1:2448656-2448675 | MS.gene012584:CDS | 45.0% | |
| ! | ACGTTTTGCAGAAGGATCCT+CGG | - | chr8.1:2449542-2449561 | None:intergenic | 45.0% |
| ! | AGGAAGGAACTGTTGGTCTA+TGG | + | chr8.1:2450029-2450048 | MS.gene012584:CDS | 45.0% |
| ! | TGCTGTTGGTCAGGTTGTTT+CGG | + | chr8.1:2448832-2448851 | MS.gene012584:CDS | 45.0% |
| !! | GGTTGACTCTGGAGTTACAA+AGG | + | chr8.1:2449201-2449220 | MS.gene012584:CDS | 45.0% |
| !! | TACTGCGGTGTTGGTTATCA+GGG | + | chr8.1:2448665-2448684 | MS.gene012584:CDS | 45.0% |
| !! | TGTTTGCCATGTTCTGAGAG+AGG | + | chr8.1:2449085-2449104 | MS.gene012584:CDS | 45.0% |
| !! | TTACTGCGGTGTTGGTTATC+AGG | + | chr8.1:2448664-2448683 | MS.gene012584:CDS | 45.0% |
| !!! | AGGATCCTCGGGTTTTATTC+TGG | - | chr8.1:2449530-2449549 | None:intergenic | 45.0% |
| AGAAAAGTGGAAGGGGTGGT+TGG | + | chr8.1:2449109-2449128 | MS.gene012584:CDS | 50.0% | |
| AGGAAGAAAAGTGGAAGGGG+TGG | + | chr8.1:2449105-2449124 | MS.gene012584:CDS | 50.0% | |
| ATACGGCTGCCAATGGAAGT+GGG | + | chr8.1:2449419-2449438 | MS.gene012584:CDS | 50.0% | |
| ATCTTCACCTTCTTGGCCAC+CGG | - | chr8.1:2448554-2448573 | None:intergenic | 50.0% | |
| CACGACCAGAATAAAACCCG+AGG | + | chr8.1:2449522-2449541 | MS.gene012584:CDS | 50.0% | |
| CACTGTTGTAGTTGAGGGCA+TGG | + | chr8.1:2449588-2449607 | MS.gene012584:CDS | 50.0% | |
| CAGGGTATGCAGAAAAACCC+TGG | + | chr8.1:2448683-2448702 | MS.gene012584:CDS | 50.0% | |
| CATGCCCTCAACTACAACAG+TGG | - | chr8.1:2449590-2449609 | None:intergenic | 50.0% | |
| CTAAACGCTATGACTGGGCT+CGG | + | chr8.1:2448783-2448802 | MS.gene012584:CDS | 50.0% | |
| GAAAGTCCACGATCCTGTTC+AGG | - | chr8.1:2448764-2448783 | None:intergenic | 50.0% | |
| GAGGTTGCTGCTACAAATGG+TGG | + | chr8.1:2449346-2449365 | MS.gene012584:CDS | 50.0% | |
| TCCGCGGCTACTGAAAGTAA+CGG | - | chr8.1:2448527-2448546 | None:intergenic | 50.0% | |
| TTAAGGCGATCAACGAAGCC+AGG | - | chr8.1:2448878-2448897 | None:intergenic | 50.0% | |
| ! | AGGAGTTAGTGCTGTTGGTC+AGG | + | chr8.1:2448823-2448842 | MS.gene012584:CDS | 50.0% |
| ! | CGTTTTGCAGAAGGATCCTC+GGG | - | chr8.1:2449541-2449560 | None:intergenic | 50.0% |
| ! | GCTGTTGGTCAGGTTGTTTC+GGG | + | chr8.1:2448833-2448852 | MS.gene012584:CDS | 50.0% |
| ! | GGTAAGATACAAGCGCCGTA+AGG | + | chr8.1:2448625-2448644 | MS.gene012584:CDS | 50.0% |
| !! | TTCTGGAGCTGTACCTGAAC+AGG | + | chr8.1:2448748-2448767 | MS.gene012584:CDS | 50.0% |
| AATCCAACCTCGGGTGCAGT+AGG | - | chr8.1:2449866-2449885 | None:intergenic | 55.0% | |
| AGATCTGCGCATCCTTGACG+GGG | + | chr8.1:2450081-2450100 | MS.gene012584:CDS | 55.0% | |
| CAGATCTGCGCATCCTTGAC+GGG | + | chr8.1:2450080-2450099 | MS.gene012584:CDS | 55.0% | |
| CCAGATCTGCGCATCCTTGA+CGG | + | chr8.1:2450079-2450098 | MS.gene012584:CDS | 55.0% | |
| GATACGGCTGCCAATGGAAG+TGG | + | chr8.1:2449418-2449437 | MS.gene012584:CDS | 55.0% | |
| GCTACTGAAAGTAACGGCGC+TGG | - | chr8.1:2448521-2448540 | None:intergenic | 55.0% | |
| GCTGTACCTGAACAGGATCG+TGG | + | chr8.1:2448755-2448774 | MS.gene012584:CDS | 55.0% | |
| ! | GCCGTTACTTTCAGTAGCCG+CGG | + | chr8.1:2448523-2448542 | MS.gene012584:CDS | 55.0% |
| CCGTCAAGGATGCGCAGATC+TGG | - | chr8.1:2450082-2450101 | None:intergenic | 60.0% | |
| GGAGAGGATACGGCTGCCAA+TGG | + | chr8.1:2449412-2449431 | MS.gene012584:CDS | 60.0% | |
| TCGTGACACCTTCCCCGTCA+AGG | - | chr8.1:2450096-2450115 | None:intergenic | 60.0% | |
| TTCAGTAGCCGCGGAAGAGC+CGG | + | chr8.1:2448532-2448551 | MS.gene012584:CDS | 60.0% | |
| !! | GAAGATGATGGGGCTTGCCG+TGG | + | chr8.1:2449663-2449682 | MS.gene012584:CDS | 60.0% |
| CACTGTGCCTACTGCACCCG+AGG | + | chr8.1:2449856-2449875 | MS.gene012584:CDS | 65.0% | |
| CTGCGCATCCTTGACGGGGA+AGG | + | chr8.1:2450085-2450104 | MS.gene012584:CDS | 65.0% | |
| GGAAGAGCCGGTGGCCAAGA+AGG | + | chr8.1:2448544-2448563 | MS.gene012584:CDS | 65.0% | |
| GTGCCTACTGCACCCGAGGT+TGG | + | chr8.1:2449860-2449879 | MS.gene012584:CDS | 65.0% | |
| AGTAGCCGCGGAAGAGCCGG+TGG | + | chr8.1:2448535-2448554 | MS.gene012584:CDS | 70.0% | |
| !! | CTTGGCCACCGGCTCTTCCG+CGG | - | chr8.1:2448543-2448562 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 2448479 | 2450180 | 2448479 | ID=MS.gene012584 |
| chr8.1 | mRNA | 2448479 | 2450180 | 2448479 | ID=MS.gene012584.t1;Parent=MS.gene012584 |
| chr8.1 | exon | 2448479 | 2449737 | 2448479 | ID=MS.gene012584.t1.exon1;Parent=MS.gene012584.t1 |
| chr8.1 | CDS | 2448479 | 2449737 | 2448479 | ID=cds.MS.gene012584.t1;Parent=MS.gene012584.t1 |
| chr8.1 | exon | 2449844 | 2450180 | 2449844 | ID=MS.gene012584.t1.exon2;Parent=MS.gene012584.t1 |
| chr8.1 | CDS | 2449844 | 2450180 | 2449844 | ID=cds.MS.gene012584.t1;Parent=MS.gene012584.t1 |
| Gene Sequence |
| Protein sequence |
