Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59369.t1 | XP_003612000.1 | 98.3 | 1048 | 16 | 2 | 1 | 1046 | 1 | 1048 | 0.00E+00 | 2070.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59369.t1 | Q6NRY2 | 28.1 | 1047 | 657 | 20 | 7 | 1000 | 87 | 1090 | 1.2e-117 | 426.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59369.t1 | G7KDK7 | 98.3 | 1048 | 16 | 2 | 1 | 1046 | 1 | 1048 | 0.0e+00 | 2070.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene59369 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene049207 | MS.gene59369 | 0.824098 | 9.70E-54 | -1.69E-46 |
| MS.gene049271 | MS.gene59369 | 0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene59369 | 0.811838 | 5.73E-51 | -1.69E-46 |
| MS.gene049666 | MS.gene59369 | 0.831251 | 1.86E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene59369 | 0.881413 | 2.45E-70 | -1.69E-46 |
| MS.gene049825 | MS.gene59369 | 0.850857 | 1.29E-60 | -1.69E-46 |
| MS.gene049850 | MS.gene59369 | 0.819996 | 8.66E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene59369 | 0.859309 | 4.52E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene59369 | 0.80029 | 1.54E-48 | -1.69E-46 |
| MS.gene050427 | MS.gene59369 | 0.819511 | 1.12E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene59369 | 0.823688 | 1.21E-53 | -1.69E-46 |
| MS.gene051574 | MS.gene59369 | 0.810187 | 1.31E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene59369 | 0.821993 | 3.00E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene59369 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene59369 | 0.811429 | 7.03E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene59369 | 0.842139 | 3.10E-58 | -1.69E-46 |
| MS.gene052519 | MS.gene59369 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene59369 | 0.825312 | 5.02E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene59369 | 0.841981 | 3.42E-58 | -1.69E-46 |
| MS.gene052879 | MS.gene59369 | 0.811727 | 6.06E-51 | -1.69E-46 |
| MS.gene053080 | MS.gene59369 | 0.817748 | 2.81E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene59369 | 0.859722 | 3.40E-63 | -1.69E-46 |
| MS.gene053226 | MS.gene59369 | 0.878883 | 1.96E-69 | -1.69E-46 |
| MS.gene053883 | MS.gene59369 | 0.8206 | 6.30E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene59369 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene59369 | 0.825248 | 5.20E-54 | -1.69E-46 |
| MS.gene054967 | MS.gene59369 | 0.815689 | 8.13E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene59369 | 0.812729 | 3.66E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene59369 | 0.81565 | 8.29E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene59369 | -0.840729 | 7.30E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene59369 | 0.825292 | 5.08E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene59369 | 0.859709 | 3.43E-63 | -1.69E-46 |
| MS.gene056043 | MS.gene59369 | -0.817241 | 3.65E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene59369 | 0.821344 | 4.24E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene59369 | 0.843665 | 1.22E-58 | -1.69E-46 |
| MS.gene056173 | MS.gene59369 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene056215 | MS.gene59369 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene59369 | 0.833995 | 3.87E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene59369 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene59369 | 0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene056642 | MS.gene59369 | 0.801301 | 9.61E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene59369 | 0.829257 | 5.70E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene59369 | 0.814816 | 1.27E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene59369 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene59369 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene59369 | 0.821862 | 3.22E-53 | -1.69E-46 |
| MS.gene058668 | MS.gene59369 | 0.809472 | 1.86E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene59369 | 0.80563 | 1.22E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene59369 | 0.854022 | 1.62E-61 | -1.69E-46 |
| MS.gene059625 | MS.gene59369 | 0.816608 | 5.07E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene59369 | 0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene59369 | 0.820997 | 5.10E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene59369 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene59369 | 0.875208 | 3.69E-68 | -1.69E-46 |
| MS.gene060521 | MS.gene59369 | 0.809533 | 1.81E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene59369 | 0.831614 | 1.51E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene59369 | 0.808341 | 3.25E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59369.t1 | MTR_5g020190 | 98.282 | 1048 | 16 | 2 | 1 | 1046 | 1 | 1048 | 0.0 | 2117 |
| MS.gene59369.t1 | MTR_1g110810 | 66.026 | 156 | 39 | 2 | 819 | 974 | 6 | 147 | 2.47e-58 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59369.t1 | AT1G63810 | 61.201 | 1049 | 399 | 7 | 2 | 1045 | 8 | 1053 | 0.0 | 1345 |
| MS.gene59369.t1 | AT1G63810 | 61.201 | 1049 | 399 | 7 | 2 | 1045 | 8 | 1053 | 0.0 | 1345 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTACAGAATAAACTTTA+AGG | 0.136067 | 5.4:-12331492 | MS.gene59369:intron |
| CTCTTGAATTTCGGAAGTTT+TGG | 0.182977 | 5.4:-12331003 | MS.gene59369:CDS |
| TGCTAGGCCTGAATTAAATT+TGG | 0.185499 | 5.4:-12335372 | MS.gene59369:CDS |
| CTAAAGAATCATGCCATAAT+TGG | 0.204880 | 5.4:+12327426 | None:intergenic |
| ATTGCATCATAGTTATTTAA+AGG | 0.206584 | 5.4:+12328123 | None:intergenic |
| AAAGTATAATTCTAGTATTT+TGG | 0.215152 | 5.4:-12333210 | MS.gene59369:CDS |
| TTTCCACCAAATTCCAATTA+TGG | 0.217606 | 5.4:-12327439 | MS.gene59369:CDS |
| GTTGATGAAACTCACATTTC+AGG | 0.219849 | 5.4:-12328291 | MS.gene59369:CDS |
| AGAGGAGGCCATTGAGCTTT+TGG | 0.235529 | 5.4:-12329431 | MS.gene59369:CDS |
| CTATAATGTTACTGCTGATT+TGG | 0.240150 | 5.4:-12335495 | MS.gene59369:CDS |
| ATCATGCCATAATTGGAATT+TGG | 0.241537 | 5.4:+12327433 | None:intergenic |
| CTCTTTACAGCTGGAAGGTT+CGG | 0.248790 | 5.4:-12330068 | MS.gene59369:intron |
| GCAGTAACATTATAGTTATC+AGG | 0.253077 | 5.4:+12335503 | None:intergenic |
| CTAACTATTGGTCCATATAT+TGG | 0.253210 | 5.4:+12329584 | None:intergenic |
| CAAATCTTTAGGCAACAAAA+AGG | 0.253875 | 5.4:+12327651 | None:intergenic |
| CAATTATGGCATGATTCTTT+AGG | 0.254065 | 5.4:-12327425 | MS.gene59369:CDS |
| CAAAATTTATTCGAGTAATA+TGG | 0.257083 | 5.4:-12331364 | MS.gene59369:CDS |
| TCTAGTTACCTTATTCAAAT+AGG | 0.261971 | 5.4:-12330004 | MS.gene59369:CDS |
| GGATCAACTTGATTTCTCTT+TGG | 0.264364 | 5.4:-12330699 | MS.gene59369:CDS |
| CAGGACAGAATGCAACTTAA+AGG | 0.272055 | 5.4:-12332132 | MS.gene59369:CDS |
| ATCATTAACAGGAACTTAAA+AGG | 0.273761 | 5.4:-12328346 | MS.gene59369:intron |
| ACCTTATTCAAATAGGAAAA+AGG | 0.279233 | 5.4:-12329997 | MS.gene59369:intron |
| ACCACTAGAAATTATGATTC+AGG | 0.279774 | 5.4:-12330165 | MS.gene59369:intron |
| TCTTTACAGCTGGAAGGTTC+GGG | 0.294108 | 5.4:-12330067 | MS.gene59369:intron |
| GTGATTTGGAGAAAGCATTT+AGG | 0.296603 | 5.4:-12331163 | MS.gene59369:CDS |
| CGCATTACCTTGAACTTCAT+TGG | 0.302825 | 5.4:-12332875 | MS.gene59369:intron |
| AGCTGGAAGGTTCGGGGCAC+TGG | 0.306980 | 5.4:-12330060 | MS.gene59369:CDS |
| CAACATGCTAGCATGATTAA+TGG | 0.310323 | 5.4:-12329623 | MS.gene59369:CDS |
| CGCGAGCAGGGAGCATTAAA+TGG | 0.312494 | 5.4:+12329382 | None:intergenic |
| GATTACCATTTACAGCATTC+AGG | 0.313847 | 5.4:-12330280 | MS.gene59369:intron |
| AGGAATTTCAGTCAGTGATT+TGG | 0.322508 | 5.4:-12331177 | MS.gene59369:CDS |
| GTGCTTTATCAAAGATTTAG+AGG | 0.327391 | 5.4:-12327569 | MS.gene59369:intron |
| CTCACATTTCAGGAGGAAAT+TGG | 0.329536 | 5.4:-12328281 | MS.gene59369:CDS |
| CAAAGTTGTTACCCAATATA+TGG | 0.332233 | 5.4:-12329596 | MS.gene59369:CDS |
| ATAAGATCCAAATTTAATTC+AGG | 0.334252 | 5.4:+12335365 | None:intergenic |
| TGATTGGACTTATTCTCCTT+TGG | 0.337140 | 5.4:-12329044 | MS.gene59369:CDS |
| AGAGGCTTTAATCCTACTTA+AGG | 0.343039 | 5.4:-12333123 | MS.gene59369:intron |
| TTAAACGCTCACCTAACTAT+TGG | 0.344725 | 5.4:+12329572 | None:intergenic |
| TCAAGCAGGCTCTTGAATTT+CGG | 0.348380 | 5.4:-12331012 | MS.gene59369:intron |
| GAAACCATTGGTTATTCAAA+AGG | 0.349722 | 5.4:-12335420 | MS.gene59369:CDS |
| GATAAAGAGCCCTTGTTCAT+AGG | 0.350370 | 5.4:-12331197 | MS.gene59369:CDS |
| ACTTTATTCAATGGATTCAA+TGG | 0.350859 | 5.4:-12335633 | None:intergenic |
| CTTGATTTCTCTTTGGCTCA+TGG | 0.352968 | 5.4:-12330692 | MS.gene59369:CDS |
| TATTGAAGGCCTCCCTTTGA+AGG | 0.354251 | 5.4:-12330511 | MS.gene59369:CDS |
| TACTGGCACACCTTGCTTCT+AGG | 0.357704 | 5.4:-12332937 | MS.gene59369:CDS |
| GCAAAGCTTGTTGATGTTGA+TGG | 0.365371 | 5.4:-12333437 | MS.gene59369:CDS |
| TCTTACAGAATAAACTTTAA+GGG | 0.366114 | 5.4:-12331491 | MS.gene59369:intron |
| TCTTTGATAAAGCACCTTGA+TGG | 0.369158 | 5.4:+12327577 | None:intergenic |
| AACATTCATAATTCAAAGAA+TGG | 0.374061 | 5.4:-12333344 | MS.gene59369:intron |
| TTAGCTAGAAGATGAGGTTC+AGG | 0.374662 | 5.4:+12330239 | None:intergenic |
| AATGGATTCAATGGATTTCA+AGG | 0.376460 | 5.4:-12335624 | MS.gene59369:CDS |
| CTTTAATTTGCGAGCCTTGG+TGG | 0.377383 | 5.4:+12327109 | None:intergenic |
| GCTTTCGAGCTTCGTTCTGC+AGG | 0.383049 | 5.4:+12334227 | None:intergenic |
| TAGTATGGGAATGTCAGAAA+TGG | 0.383085 | 5.4:-12330808 | MS.gene59369:CDS |
| TAACTATTGGTCCATATATT+GGG | 0.384799 | 5.4:+12329585 | None:intergenic |
| ATATTTCCTTCGCCTTCCTT+TGG | 0.385238 | 5.4:+12332550 | None:intergenic |
| GTGTAGAGGTGGTGGATTTG+AGG | 0.391006 | 5.4:-12331893 | MS.gene59369:CDS |
| CTTCTAGGCAACAAATTAGT+AGG | 0.395356 | 5.4:-12332922 | MS.gene59369:CDS |
| TTAGAGAAATCTCCATCTAT+TGG | 0.398476 | 5.4:-12334268 | MS.gene59369:CDS |
| TATGTTCATGATTGCCTGAA+TGG | 0.401910 | 5.4:-12332977 | MS.gene59369:CDS |
| CATCTATTGGTAGGGTTGAA+TGG | 0.402374 | 5.4:-12334255 | MS.gene59369:CDS |
| TACTTTCTTTGAGTAAACTA+AGG | 0.402820 | 5.4:+12329788 | None:intergenic |
| AAGCGTTTGCGTCTTATTGA+AGG | 0.404458 | 5.4:-12330525 | MS.gene59369:CDS |
| GTCTTTAAATCTTCTAAGCT+CGG | 0.409788 | 5.4:+12330970 | None:intergenic |
| TTTAACAGCATAGTCAATCT+TGG | 0.412420 | 5.4:+12331858 | None:intergenic |
| GCTCCCTGCTCGCGGATCAC+CGG | 0.412876 | 5.4:-12329373 | MS.gene59369:CDS |
| TTAAATATGATTATTGTATG+AGG | 0.416890 | 5.4:-12331840 | MS.gene59369:intron |
| TCTTCTTTACTTTCAGCATT+CGG | 0.417000 | 5.4:+12331125 | None:intergenic |
| GCATTTAGGATGGTTGATAT+TGG | 0.417330 | 5.4:-12331149 | MS.gene59369:CDS |
| TCAATTGCAATTTCATCCAT+TGG | 0.417715 | 5.4:+12330037 | None:intergenic |
| CGACTTTAATTTGCGAGCCT+TGG | 0.420314 | 5.4:+12327106 | None:intergenic |
| AACTACTACAATATCTTCCT+TGG | 0.420798 | 5.4:+12330724 | None:intergenic |
| GGATTTCGTCGATGGAAGAT+TGG | 0.421013 | 5.4:+12335525 | None:intergenic |
| AACAAGGAGCTATATGCATC+AGG | 0.422250 | 5.4:-12331467 | MS.gene59369:CDS |
| GACGGATGACACATGACAAC+TGG | 0.422957 | 5.4:+12332102 | None:intergenic |
| CGCGGATCACCGGGTTTATG+AGG | 0.428082 | 5.4:-12329363 | MS.gene59369:intron |
| CTCCCTGCTCGCGGATCACC+GGG | 0.429436 | 5.4:-12329372 | MS.gene59369:CDS |
| CAATATATGGACCAATAGTT+AGG | 0.435471 | 5.4:-12329583 | MS.gene59369:intron |
| TTTGTTGCCTAAAGATTTGA+AGG | 0.436842 | 5.4:-12327647 | MS.gene59369:CDS |
| CATTCAACCCTACCAATAGA+TGG | 0.437290 | 5.4:+12334256 | None:intergenic |
| CGCCTACCCTTCAAATCTTT+AGG | 0.441459 | 5.4:+12327640 | None:intergenic |
| CAATTTACCTCCCATCTGTA+TGG | 0.442153 | 5.4:+12328257 | None:intergenic |
| AAACCATTGGTTATTCAAAA+GGG | 0.446923 | 5.4:-12335419 | MS.gene59369:CDS |
| TCAAATATCAAACCTTAAGT+AGG | 0.448165 | 5.4:+12333111 | None:intergenic |
| AGTATGGGAATGTCAGAAAT+GGG | 0.450581 | 5.4:-12330807 | MS.gene59369:CDS |
| TGTAGGGCCAGTGATGTTCT+TGG | 0.450632 | 5.4:-12328762 | MS.gene59369:CDS |
| AGGTTCGGGGCACTGGCCAA+TGG | 0.459859 | 5.4:-12330053 | MS.gene59369:CDS |
| TTCTGCTTGTTTGGTAGAGG+AGG | 0.459986 | 5.4:-12329446 | MS.gene59369:CDS |
| AAAATACTAGAATTATACTT+TGG | 0.461888 | 5.4:+12333212 | None:intergenic |
| CTAAAAGCTGTAGGTGAAGT+TGG | 0.466714 | 5.4:-12327166 | MS.gene59369:CDS |
| TCTTTGGCTCATGGTGCTGT+AGG | 0.468769 | 5.4:-12330683 | MS.gene59369:intron |
| CTTCTCTTCTCATCAGAAGT+TGG | 0.471435 | 5.4:-12328060 | MS.gene59369:CDS |
| AGTTGTCATGTGTCATCCGT+CGG | 0.471772 | 5.4:-12332100 | MS.gene59369:CDS |
| AGAAGGATTATTTGAACTAC+AGG | 0.474516 | 5.4:-12334336 | MS.gene59369:CDS |
| AAAGCATCTGAGGCCTGGAC+TGG | 0.476348 | 5.4:-12328725 | MS.gene59369:CDS |
| ATGATAAAGCATCTGAGGCC+TGG | 0.480277 | 5.4:-12328730 | MS.gene59369:CDS |
| GTTGTCATGTGTCATCCGTC+GGG | 0.487095 | 5.4:-12332099 | MS.gene59369:CDS |
| AGTTGCTCTCAAACTATGAT+TGG | 0.487450 | 5.4:-12329060 | MS.gene59369:CDS |
| GCGGCAATGGCGTCATCCAC+AGG | 0.489625 | 5.4:+12335551 | None:intergenic |
| ATACATACCAATGAAGTTCA+AGG | 0.491806 | 5.4:+12332868 | None:intergenic |
| ATGCCATAATTGGAATTTGG+TGG | 0.493716 | 5.4:+12327436 | None:intergenic |
| GTCTAGACTAGCAAAACGTT+GGG | 0.494019 | 5.4:-12329485 | MS.gene59369:intron |
| CTGTAGGTGAAGTTGGAAAA+GGG | 0.494994 | 5.4:-12327159 | MS.gene59369:CDS |
| GCTGTAGGTGAAGTTGGAAA+AGG | 0.496760 | 5.4:-12327160 | MS.gene59369:CDS |
| AGAAATCTCCATCTATTGGT+AGG | 0.497491 | 5.4:-12334264 | MS.gene59369:CDS |
| TATTTAAAGGAGTTCGCAAA+AGG | 0.498991 | 5.4:+12328136 | None:intergenic |
| GTTCTCTCTTTACAGCTGGA+AGG | 0.500279 | 5.4:-12330073 | MS.gene59369:intron |
| CGGTATGCTAAAGATATCCT+TGG | 0.500426 | 5.4:+12333388 | None:intergenic |
| GAGGTGTCTTTATCTCTGCT+TGG | 0.501019 | 5.4:-12334302 | MS.gene59369:CDS |
| GGATATTGGTGCTGATAAAG+TGG | 0.501474 | 5.4:-12335456 | MS.gene59369:CDS |
| AGGACAGAATGCAACTTAAA+GGG | 0.502070 | 5.4:-12332131 | MS.gene59369:CDS |
| ACAAATTAGTAGGTCAATGA+AGG | 0.503786 | 5.4:-12332912 | MS.gene59369:CDS |
| ATCTCTTAGACTGAATAAGT+TGG | 0.504008 | 5.4:-12330204 | MS.gene59369:CDS |
| AGGAAATTGGTCCATACAGA+TGG | 0.506007 | 5.4:-12328268 | MS.gene59369:CDS |
| CGAAGGAAATATTACTAAAG+AGG | 0.509950 | 5.4:-12332539 | MS.gene59369:intron |
| GTTATCAGGGATTTCGTCGA+TGG | 0.510390 | 5.4:+12335517 | None:intergenic |
| CACAAATTGTATACCTTGGA+AGG | 0.511785 | 5.4:+12327365 | None:intergenic |
| TTTGTATGGATGATGAATGC+TGG | 0.512757 | 5.4:-12331442 | MS.gene59369:CDS |
| AAACCCGGTGATCCGCGAGC+AGG | 0.518854 | 5.4:+12329369 | None:intergenic |
| GTTCAAGTTTAAGAAACCAT+TGG | 0.520112 | 5.4:-12335432 | MS.gene59369:CDS |
| TGTCTAGACTAGCAAAACGT+TGG | 0.520908 | 5.4:-12329486 | MS.gene59369:intron |
| CCTGTACTGATTGTGTATCC+AGG | 0.522683 | 5.4:-12334205 | MS.gene59369:intron |
| GGAAGATATTGTAGTAGTTG+TGG | 0.524024 | 5.4:-12330720 | MS.gene59369:CDS |
| GAGAATTATTCCATCGGCCA+AGG | 0.526428 | 5.4:-12333405 | MS.gene59369:CDS |
| CAAGAGGAAGTGGTCGAGAA+AGG | 0.526715 | 5.4:-12327208 | MS.gene59369:CDS |
| GATACGATTTCTCCCACGTC+AGG | 0.528007 | 5.4:+12327387 | None:intergenic |
| CAGTAACATTATAGTTATCA+GGG | 0.529146 | 5.4:+12335504 | None:intergenic |
| GGAGAGAATGAGCAAGCTGT+AGG | 0.533273 | 5.4:-12328779 | MS.gene59369:CDS |
| TTATGGCATGATTCTTTAGG+AGG | 0.535241 | 5.4:-12327422 | MS.gene59369:CDS |
| TGGTAGACTTTGATCCATCA+AGG | 0.538711 | 5.4:-12327591 | MS.gene59369:CDS |
| GCGATGCCATCGGCCTGACG+TGG | 0.540608 | 5.4:-12327400 | MS.gene59369:CDS |
| ATACTTTGGTGTAGCTTGAA+CGG | 0.541725 | 5.4:+12333226 | None:intergenic |
| ATACATCATTCACGCTCCAC+TGG | 0.543736 | 5.4:+12331327 | None:intergenic |
| TCTTTAGGAGGCGATGCCAT+CGG | 0.547798 | 5.4:-12327410 | MS.gene59369:CDS |
| GGAAGATTGGATAGCGGCAA+TGG | 0.548829 | 5.4:+12335538 | None:intergenic |
| ACTTTCTTTGAGTAAACTAA+GGG | 0.549714 | 5.4:+12329789 | None:intergenic |
| ATAAGCAACCAAAAGCTCAA+TGG | 0.551656 | 5.4:+12329423 | None:intergenic |
| CTTTCGAGCTTCGTTCTGCA+GGG | 0.552691 | 5.4:+12334228 | None:intergenic |
| GGTAAATTACCAGAGTCTAA+AGG | 0.553990 | 5.4:+12330474 | None:intergenic |
| AAATTTCCAGAGTGTGCTAT+CGG | 0.555755 | 5.4:+12330573 | None:intergenic |
| TGCTTTGACACTTAAATGCA+TGG | 0.556334 | 5.4:-12331920 | MS.gene59369:CDS |
| CCTGGATACACAATCAGTAC+AGG | 0.557006 | 5.4:+12334205 | None:intergenic |
| GAAATCTCCATCTATTGGTA+GGG | 0.557704 | 5.4:-12334263 | MS.gene59369:CDS |
| TCGACTCCATGTCTCTGAAG+TGG | 0.557728 | 5.4:+12332585 | None:intergenic |
| GTACACTAGACACCTTCAAA+GGG | 0.559345 | 5.4:+12330499 | None:intergenic |
| TAGCCGAGCATGTGCTTAGT+CGG | 0.562064 | 5.4:-12330760 | MS.gene59369:CDS |
| CATTTAATGCTCCCTGCTCG+CGG | 0.563307 | 5.4:-12329381 | MS.gene59369:CDS |
| TTTGGAGAAAGCATTTAGGA+TGG | 0.563350 | 5.4:-12331159 | MS.gene59369:CDS |
| AGTTCAAATAATCCTTCTCA+TGG | 0.563782 | 5.4:+12334341 | None:intergenic |
| AACCCGGTGATCCGCGAGCA+GGG | 0.564009 | 5.4:+12329370 | None:intergenic |
| GAATAACTAACCAGTGCACT+AGG | 0.565091 | 5.4:+12328695 | None:intergenic |
| GAAGCGGAAACAAGAGGAAG+TGG | 0.565503 | 5.4:-12327218 | MS.gene59369:CDS |
| TTGCAGCCACTTCAGAGACA+TGG | 0.566145 | 5.4:-12332591 | MS.gene59369:intron |
| AGTAGAATTGCAGAAAGCAC+AGG | 0.566781 | 5.4:-12330947 | MS.gene59369:intron |
| GAGAGAATGAGCAAGCTGTA+GGG | 0.567509 | 5.4:-12328778 | MS.gene59369:CDS |
| AATGACTTGAGCCCGAGTGA+TGG | 0.568788 | 5.4:-12329007 | MS.gene59369:CDS |
| TAATTTGTTGCCTAGAAGCA+AGG | 0.570477 | 5.4:+12332927 | None:intergenic |
| TGTACACTAGACACCTTCAA+AGG | 0.570796 | 5.4:+12330498 | None:intergenic |
| AGTGTACAGCCTTTAGACTC+TGG | 0.571017 | 5.4:-12330483 | MS.gene59369:intron |
| GATGTGGATGTGCTAATGTC+AGG | 0.572289 | 5.4:-12329847 | MS.gene59369:CDS |
| CACTGCAACTGAGGATGATG+TGG | 0.572895 | 5.4:-12329863 | MS.gene59369:CDS |
| CCAATATCCCTAACAAAACT+CGG | 0.573218 | 5.4:+12335470 | None:intergenic |
| GACTGAAATTCCTATGAACA+AGG | 0.573630 | 5.4:+12331187 | None:intergenic |
| CTCACAGATTTCTAAACCTG+TGG | 0.575257 | 5.4:-12335567 | MS.gene59369:CDS |
| GTGGCAGCCTTCAAAAGAAG+TGG | 0.576581 | 5.4:-12329897 | MS.gene59369:intron |
| ACAGGAACACAAGTTGCTAA+AGG | 0.577130 | 5.4:-12327697 | MS.gene59369:intron |
| ACTACAGGTACCATGCTAAG+AGG | 0.577228 | 5.4:-12334321 | MS.gene59369:CDS |
| ACCTGAATCATAATTTCTAG+TGG | 0.579487 | 5.4:+12330164 | None:intergenic |
| GCTAGAAGATGAGGTTCAGG+AGG | 0.581102 | 5.4:+12330242 | None:intergenic |
| AGCAAGGTGTGCCAGTATGA+CGG | 0.581622 | 5.4:+12332943 | None:intergenic |
| ACAGGAGTGCTTCCATGAGA+AGG | 0.582021 | 5.4:-12334353 | MS.gene59369:intron |
| TTCTCATCAGAAGTTGGTCA+TGG | 0.582565 | 5.4:-12328054 | MS.gene59369:intron |
| TGGATTATCACCTAGTGCAC+TGG | 0.583426 | 5.4:-12328705 | MS.gene59369:intron |
| CGGAAGGCGCTAAAAGCTGT+AGG | 0.584387 | 5.4:-12327175 | MS.gene59369:CDS |
| TTGTCATGTGTCATCCGTCG+GGG | 0.584524 | 5.4:-12332098 | MS.gene59369:CDS |
| TGGCAGCCTTCAAAAGAAGT+GGG | 0.584917 | 5.4:-12329896 | MS.gene59369:intron |
| TTTGGAAGACATGTATATGG+AGG | 0.585148 | 5.4:-12333192 | MS.gene59369:CDS |
| GATGACATGCACTGCAACTG+AGG | 0.585163 | 5.4:-12329872 | MS.gene59369:CDS |
| GGTCTCTACTTTCCAAAGGA+AGG | 0.587102 | 5.4:-12332562 | MS.gene59369:CDS |
| ATGGAGAAGTGTAGAGGTGG+TGG | 0.588673 | 5.4:-12331901 | MS.gene59369:CDS |
| CATAGTTTGAGAGCAACTGC+AGG | 0.592540 | 5.4:+12329065 | None:intergenic |
| TTCAAAGAAGCGGAAACAAG+AGG | 0.592916 | 5.4:-12327224 | MS.gene59369:intron |
| ACTGTAGCCAAGAACATCAC+TGG | 0.595004 | 5.4:+12328755 | None:intergenic |
| TGCCTAAAGATTTGAAGGGT+AGG | 0.596613 | 5.4:-12327642 | MS.gene59369:CDS |
| TACTTTCCAAAGGAAGGCGA+AGG | 0.597554 | 5.4:-12332556 | MS.gene59369:CDS |
| GAATGCTGAAAGTAAAGAAG+AGG | 0.598397 | 5.4:-12331123 | MS.gene59369:intron |
| TTACGCGTCATGTTTAACTT+CGG | 0.598990 | 5.4:+12333368 | None:intergenic |
| CAAGTTGCTAAAGGACATGC+TGG | 0.599455 | 5.4:-12327688 | MS.gene59369:CDS |
| ACTAGGTGATAATCCAGTCC+AGG | 0.600816 | 5.4:+12328712 | None:intergenic |
| CAGGGAGCATTAAATGGCAA+AGG | 0.602397 | 5.4:+12329388 | None:intergenic |
| TGGATGGAAGCAACTAAGAG+AGG | 0.602931 | 5.4:-12333141 | MS.gene59369:CDS |
| CTAAAGATATCCTTGGCCGA+TGG | 0.603987 | 5.4:+12333395 | None:intergenic |
| AGTTTATGATAAAGCATCTG+AGG | 0.608023 | 5.4:-12328735 | MS.gene59369:CDS |
| ATGCCGACTAAGCACATGCT+CGG | 0.610610 | 5.4:+12330757 | None:intergenic |
| GGAGAAATCGTATCCTTCCA+AGG | 0.611605 | 5.4:-12327378 | MS.gene59369:intron |
| GGAAATTGGTCCATACAGAT+GGG | 0.612106 | 5.4:-12328267 | MS.gene59369:CDS |
| TTATTTATGTCAACAACCAA+AGG | 0.612446 | 5.4:+12329028 | None:intergenic |
| CTTTACAGCTGGAAGGTTCG+GGG | 0.614274 | 5.4:-12330066 | MS.gene59369:intron |
| TCTTATTATAAGATTACCCA+AGG | 0.614920 | 5.4:-12335348 | MS.gene59369:intron |
| ACAAGGAGCTATATGCATCA+GGG | 0.615593 | 5.4:-12331466 | MS.gene59369:CDS |
| GATAAAGACACCTCTTAGCA+TGG | 0.616995 | 5.4:+12334311 | None:intergenic |
| TTTCTCCCACGTCAGGCCGA+TGG | 0.623755 | 5.4:+12327394 | None:intergenic |
| GATGAAACTCACATTTCAGG+AGG | 0.625753 | 5.4:-12328288 | MS.gene59369:CDS |
| TCGAGGTCTCTACTTTCCAA+AGG | 0.627437 | 5.4:-12332566 | MS.gene59369:CDS |
| TCGGCATCTATCTCTATCCA+AGG | 0.632177 | 5.4:-12330741 | MS.gene59369:CDS |
| GAAAGGATACGACCCTCGGA+AGG | 0.632458 | 5.4:-12327191 | MS.gene59369:CDS |
| CCATTGGTTATTCAAAAGGG+TGG | 0.632569 | 5.4:-12335416 | MS.gene59369:CDS |
| GGAGAAATGCACAATGCCAG+TGG | 0.633444 | 5.4:-12331343 | MS.gene59369:CDS |
| ACAGATCCGATAGCACACTC+TGG | 0.634529 | 5.4:-12330579 | MS.gene59369:intron |
| GATATGCAAGTTTGTCCTTG+TGG | 0.635292 | 5.4:+12328091 | None:intergenic |
| TTTGAAGGGTAGGCGGCCAG+AGG | 0.639215 | 5.4:-12327632 | MS.gene59369:CDS |
| AATAAACTTTAAGGGAAACA+AGG | 0.639781 | 5.4:-12331483 | MS.gene59369:CDS |
| CGATGCCATCGGCCTGACGT+GGG | 0.641131 | 5.4:-12327399 | MS.gene59369:CDS |
| ACTCCACAGAGAGTCTTGCT+AGG | 0.642957 | 5.4:-12335388 | MS.gene59369:CDS |
| TCTAGTGGTTGAATGCATGA+CGG | 0.644961 | 5.4:+12330179 | None:intergenic |
| TATACTTTCTCAAGCCACCA+AGG | 0.646983 | 5.4:-12327123 | MS.gene59369:CDS |
| GGCAGCCTTCAAAAGAAGTG+GGG | 0.648272 | 5.4:-12329895 | MS.gene59369:intron |
| GATGAGAAGAGAAGCCTCTG+AGG | 0.648387 | 5.4:+12328069 | None:intergenic |
| GCAGCCTTCAAAAGAAGTGG+GGG | 0.648878 | 5.4:-12329894 | MS.gene59369:intron |
| AAATGCATGGAGAAGTGTAG+AGG | 0.649090 | 5.4:-12331907 | MS.gene59369:CDS |
| TGTCATGTGTCATCCGTCGG+GGG | 0.650474 | 5.4:-12332097 | MS.gene59369:CDS |
| CTAAAGATTTGAAGGGTAGG+CGG | 0.651617 | 5.4:-12327639 | MS.gene59369:CDS |
| GGGAATGTCAGAAATGGGAA+AGG | 0.651657 | 5.4:-12330802 | MS.gene59369:CDS |
| AGAAACACACCTCATAAACC+CGG | 0.656425 | 5.4:+12329354 | None:intergenic |
| CACTAGACACCTTCAAAGGG+AGG | 0.656957 | 5.4:+12330502 | None:intergenic |
| TGCAATCATTCTTCTCCACA+AGG | 0.658037 | 5.4:-12328106 | MS.gene59369:CDS |
| GTATATTCAGCTTCAAGACG+AGG | 0.658593 | 5.4:-12331944 | MS.gene59369:intron |
| AGGCCTAGCAAGACTCTCTG+TGG | 0.667739 | 5.4:+12335385 | None:intergenic |
| TGCATGGAGAAGTGTAGAGG+TGG | 0.668356 | 5.4:-12331904 | MS.gene59369:CDS |
| TCGAGAAAGGATACGACCCT+CGG | 0.670581 | 5.4:-12327195 | MS.gene59369:CDS |
| TTGTTGCCTAAAGATTTGAA+GGG | 0.674324 | 5.4:-12327646 | MS.gene59369:CDS |
| ACTTCAGAGACATGGAGTCG+AGG | 0.679494 | 5.4:-12332583 | MS.gene59369:CDS |
| CTAGAAGATGAGGTTCAGGA+GGG | 0.689021 | 5.4:+12330243 | None:intergenic |
| GTCGATGGAAGATTGGATAG+CGG | 0.692877 | 5.4:+12335532 | None:intergenic |
| ACACTCTGGAAATTTGCTCG+AGG | 0.697918 | 5.4:-12330565 | MS.gene59369:CDS |
| ACTGAAATTCCTATGAACAA+GGG | 0.701369 | 5.4:+12331188 | None:intergenic |
| AATTGGTCCATACAGATGGG+AGG | 0.702380 | 5.4:-12328264 | MS.gene59369:intron |
| ACAAACTTGCATATCCTCAG+AGG | 0.716900 | 5.4:-12328083 | MS.gene59369:CDS |
| TGAATGCTGGAGATTGTACG+AGG | 0.795043 | 5.4:-12331429 | MS.gene59369:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12327111 | 12335645 | 12327111 | ID=MS.gene59369 |
| chr5.4 | mRNA | 12327111 | 12335645 | 12327111 | ID=MS.gene59369.t1;Parent=MS.gene59369 |
| chr5.4 | exon | 12335349 | 12335645 | 12335349 | ID=MS.gene59369.t1.exon1;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12335349 | 12335645 | 12335349 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12334206 | 12334371 | 12334206 | ID=MS.gene59369.t1.exon2;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12334206 | 12334371 | 12334206 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12333345 | 12333461 | 12333345 | ID=MS.gene59369.t1.exon3;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12333345 | 12333461 | 12333345 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12333124 | 12333254 | 12333124 | ID=MS.gene59369.t1.exon4;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12333124 | 12333254 | 12333124 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12332876 | 12333026 | 12332876 | ID=MS.gene59369.t1.exon5;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12332876 | 12333026 | 12332876 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12332540 | 12332607 | 12332540 | ID=MS.gene59369.t1.exon6;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12332540 | 12332607 | 12332540 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12332053 | 12332151 | 12332053 | ID=MS.gene59369.t1.exon7;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12332053 | 12332151 | 12332053 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12331841 | 12331956 | 12331841 | ID=MS.gene59369.t1.exon8;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12331841 | 12331956 | 12331841 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12331331 | 12331505 | 12331331 | ID=MS.gene59369.t1.exon9;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12331331 | 12331505 | 12331331 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12331124 | 12331234 | 12331124 | ID=MS.gene59369.t1.exon10;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12331124 | 12331234 | 12331124 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12330948 | 12331026 | 12330948 | ID=MS.gene59369.t1.exon11;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12330948 | 12331026 | 12330948 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12330684 | 12330827 | 12330684 | ID=MS.gene59369.t1.exon12;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12330684 | 12330827 | 12330684 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12330484 | 12330597 | 12330484 | ID=MS.gene59369.t1.exon13;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12330484 | 12330597 | 12330484 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12330166 | 12330287 | 12330166 | ID=MS.gene59369.t1.exon14;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12330166 | 12330287 | 12330166 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12329998 | 12330080 | 12329998 | ID=MS.gene59369.t1.exon15;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12329998 | 12330080 | 12329998 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12329791 | 12329912 | 12329791 | ID=MS.gene59369.t1.exon16;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12329791 | 12329912 | 12329791 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12329584 | 12329704 | 12329584 | ID=MS.gene59369.t1.exon17;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12329584 | 12329704 | 12329584 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12329364 | 12329501 | 12329364 | ID=MS.gene59369.t1.exon18;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12329364 | 12329501 | 12329364 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12328994 | 12329090 | 12328994 | ID=MS.gene59369.t1.exon19;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12328994 | 12329090 | 12328994 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12328706 | 12328831 | 12328706 | ID=MS.gene59369.t1.exon20;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12328706 | 12328831 | 12328706 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12328265 | 12328357 | 12328265 | ID=MS.gene59369.t1.exon21;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12328265 | 12328357 | 12328265 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12328055 | 12328160 | 12328055 | ID=MS.gene59369.t1.exon22;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12328055 | 12328160 | 12328055 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12327570 | 12327715 | 12327570 | ID=MS.gene59369.t1.exon23;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12327570 | 12327715 | 12327570 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12327379 | 12327468 | 12327379 | ID=MS.gene59369.t1.exon24;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12327379 | 12327468 | 12327379 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| chr5.4 | exon | 12327111 | 12327239 | 12327111 | ID=MS.gene59369.t1.exon25;Parent=MS.gene59369.t1 |
| chr5.4 | CDS | 12327111 | 12327239 | 12327111 | ID=cds.MS.gene59369.t1;Parent=MS.gene59369.t1 |
| Gene Sequence |
| Protein sequence |
